RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16332
(359 letters)
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding
site, protein-peptide complex, clathrin adaptor; 2.50A
{Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A
3h85_A 1bxx_A 1hes_A 1h6e_A
Length = 314
Score = 76.1 bits (186), Expect = 8e-16
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 130 HPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGG 189
H V F S+ I P F L R+ +T + LP + + G
Sbjct: 128 HQCVRLSKFDSERSISFIPPDGEFEL--------MRYRTTKDIILPFRVIPLVREVGRTK 179
Query: 190 CDVNIEYELE-HEEKELNQVTISIPLPLHCT-PNVTECDGDYNYDARKNTLTWSLALIDS 247
+V + + ++ + IP PL+ + V G Y A +N + W + +
Sbjct: 180 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 239
Query: 248 SNK---SGALEFSAPSASQSD-FFPLQVSFSCNQSYANIKI 284
+ S +E + + P+ ++F + + +K+
Sbjct: 240 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKV 280
Score = 34.1 bits (77), Expect = 0.060
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 269 LQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNK-- 326
++ +F + I++ I L V G Y A +N + W + + +
Sbjct: 186 IKSNFKPSLLAQKIEVRIP-TPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 244
Query: 327 -SGALEFSAPSASQSD-FFPLQVSFSCNQSYANIK 359
S +E + + P+ ++F + + +K
Sbjct: 245 ISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLK 279
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich,
coated PIT, golgi apparat membrane, phosphoprotein,
protein transport, transport; 1.60A {Homo sapiens}
Length = 301
Score = 74.2 bits (181), Expect = 4e-15
Identities = 31/181 (17%), Positives = 63/181 (34%), Gaps = 27/181 (14%)
Query: 123 RLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWP 182
R+ H +V+ + F+S + L+ P + R+ +D+ PL +P
Sbjct: 97 RVDEVSFHSSVNLDEFESHRILRLQPPQGELTV--------MRYQLSDDLPSPLPFRLFP 148
Query: 183 S-DNGSGGCDVNIEYELEHEEK---ELNQVTISIPLPLHCT-PNVTECDGDYNYDARKNT 237
S G + + +L + + V + +PLP + + + +
Sbjct: 149 SVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAELAEGA 208
Query: 238 LTWSLALI-DSSNKSGALEFSAPS------------ASQSDFFPLQVSFSCNQ-SYANIK 283
L W L + S SG + P AS P +SF + + + ++
Sbjct: 209 LRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPRHTCSGLQ 268
Query: 284 I 284
+
Sbjct: 269 V 269
Score = 34.9 bits (79), Expect = 0.035
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 14/98 (14%)
Query: 269 LQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALI-DSSNKS 327
L+ N+++ + L + + + + + L W L + S S
Sbjct: 165 LRCDLLSKSQALNVRLHLP-LPRGVVSLSQELSSPEQKAELAEGALRWDLPRVQGGSQLS 223
Query: 328 GALEFSAPS------------ASQSDFFPLQVSFSCNQ 353
G + P AS P +SF +
Sbjct: 224 GLFQMDVPGPPGPPSHGLSTSASPLGLGPASLSFELPR 261
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 423
Score = 73.1 bits (178), Expect = 2e-14
Identities = 38/307 (12%), Positives = 90/307 (29%), Gaps = 43/307 (14%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARI 68
++E + DN + DE++ GY ++ + I + K+ + + +
Sbjct: 98 LEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAV 157
Query: 69 EGLLAAFPKLMSSGKQHTFVE-TDSVRYVYQP------------------LEKLYMLLIT 109
+ + K F++ ++V + L + L +
Sbjct: 158 SWR----SEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLG 213
Query: 110 -----TKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKW 164
+ +++ L H V F++ I P F L
Sbjct: 214 LNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFEL--------M 265
Query: 165 RFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEK-ELNQVTISIPLPLHCT-PNV 222
+ + I + + ++ + + + + N V I IP+P P
Sbjct: 266 SYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKF 325
Query: 223 TECDGDYNYDARKNTLTWSLALIDSSNK---SGALEFSAPSASQSDFFP-LQVSFSCNQ- 277
G + + + WS+ + + A + P + V F
Sbjct: 326 KTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYF 385
Query: 278 SYANIKI 284
+ + I++
Sbjct: 386 TTSGIQV 392
Score = 55.0 bits (131), Expect = 1e-08
Identities = 33/369 (8%), Positives = 89/369 (24%), Gaps = 70/369 (18%)
Query: 55 IVSRQFV-EMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTS 113
++ R + ++ + +E + + G + VR+++ LY++ + K +
Sbjct: 16 LICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNA 75
Query: 114 NILEDLETLRLFSRV--------------THPNVDKELFKSKTEIG---------LKNPS 150
+ L +V + + EL + G L+
Sbjct: 76 CVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFI 135
Query: 151 KPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELN---- 206
+ G + T T+ + + + + L
Sbjct: 136 TQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIV 195
Query: 207 ---------------QVTISIPLPLHCTPNVTECD---GDYNYDARKNTLTWS----LAL 244
++ ++ + T D + + ++
Sbjct: 196 GSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFENDRTISF 255
Query: 245 IDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFLLHCT--------- 295
I + + + + + + V + S + + F T
Sbjct: 256 IPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIP 315
Query: 296 -------PNVTECDGDYNYDARKNTLTWSLALIDSSNK---SGALEFSAPSASQSDFFP- 344
P G + + + WS+ + + A + P
Sbjct: 316 VPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPP 375
Query: 345 LQVSFSCNQ 353
+ V F
Sbjct: 376 ISVKFEIPY 384
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 70.4 bits (171), Expect = 1e-13
Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 130 HPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGG 189
H V F S+ I P F L R+ +T + LP + + G
Sbjct: 199 HQCVRLSKFDSERSISFIPPDGEFEL--------MRYRTTKDIILPFRVIPLVREVGRTK 250
Query: 190 CDVNIEYELE-HEEKELNQVTISIPLPLHCT-PNVTECDGDYNYDARKNTLTWSLALIDS 247
+V + + ++ + IP PL+ + V G Y A +N + W + +
Sbjct: 251 LEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG 310
Query: 248 SNK---SGALEFSAPSASQSD-FFPLQVSFSCNQSYANIKI 284
+ S +E + + P+ ++F + + +K+
Sbjct: 311 MKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKV 351
Score = 30.3 bits (67), Expect = 0.96
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 269 LQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNK-- 326
++ +F + I++ I L V G Y A +N + W + + +
Sbjct: 257 IKSNFKPSLLAQKIEVRIP-TPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQ 315
Query: 327 -SGALEFSAPSASQSD-FFPLQVSFSCNQSYANIK 359
S +E + + P+ ++F + + +K
Sbjct: 316 ISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLK 350
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV,
NEF, antigen presentation, HOST defense, adaptor protein
complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Length = 266
Score = 67.2 bits (163), Expect = 6e-13
Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 15/163 (9%)
Query: 129 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSG 188
H V F++ I P F L + + I +
Sbjct: 81 FHQCVRLSRFENDRTISFIPPDGEFEL--------MSYRLNTHVKPLIWIESVIEKHSHS 132
Query: 189 GCDVNIEYELEHEEK-ELNQVTISIPLPLHCT-PNVTECDGDYNYDARKNTLTWSLALID 246
+ ++ + + + + N V I IP+P P G + + + WS+
Sbjct: 133 RIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFP 192
Query: 247 SSN-KSGALEFSAPSASQSD---FFPLQVSFS-CNQSYANIKI 284
F PS D P+ V F + + I++
Sbjct: 193 GGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQV 235
Score = 31.0 bits (69), Expect = 0.58
Identities = 18/197 (9%), Positives = 48/197 (24%), Gaps = 29/197 (14%)
Query: 177 SINCWPSDNG---SGGCDVNIEYELEHEEKELNQVTISIPLPLHCTPNVTECD---GDYN 230
++N S NG +I+ + ++ ++ + T D
Sbjct: 21 AVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVK 80
Query: 231 YDARKNTLTWS----LALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFI 286
+ + ++ I + + + + + + V + S +
Sbjct: 81 FHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKA 140
Query: 287 EKLFLLHCT----------------PNVTECDGDYNYDARKNTLTWSLALIDSSNK---S 327
+ F T P G + + + WS+ +
Sbjct: 141 KSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMR 200
Query: 328 GALEFSAPSASQSDFFP 344
+ A + P
Sbjct: 201 AHFGLPSVEAEDKEGKP 217
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Rattus
norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Length = 435
Score = 63.5 bits (153), Expect = 2e-11
Identities = 47/314 (14%), Positives = 101/314 (32%), Gaps = 46/314 (14%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRARI 68
+ E + +N + DEI+ GY ++ T I + IK +++ +++
Sbjct: 96 ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQV 155
Query: 69 EGLLAAFPKLMSSGKQHTFVET-DSVRYVYQP------------------LEKLYMLLIT 109
G + + + + F++ +SV + P L +
Sbjct: 156 TGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG 215
Query: 110 TKTSNILEDLETLRLFSRVT-------------HPNVDKELFKSKTEIGLKNPSKPFPLN 156
++E H V F S+ I P F L
Sbjct: 216 MNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL- 274
Query: 157 NDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH-EEKELNQVTISIPLP 215
R+ +T + LP + + G +V + + ++ + IP P
Sbjct: 275 -------MRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTP 327
Query: 216 LHCT-PNVTECDGDYNYDARKNTLTWSLALIDSSNK---SGALEFSAPSASQSDFFP-LQ 270
L+ + V G Y A +N + W + + + S +E + + P +
Sbjct: 328 LNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPIS 387
Query: 271 VSFSCNQSYANIKI 284
++F + + +K+
Sbjct: 388 MNFEVPFAPSGLKV 401
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Mus
musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Length = 142
Score = 59.6 bits (144), Expect = 4e-11
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 55 IVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKT 112
+++ +++ + L+ +++ K FVE + + +Y+ LY +
Sbjct: 15 RLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVN 74
Query: 113 SNILEDLETLRLFSRV 128
N L LE + F V
Sbjct: 75 DNNLAYLEAIHNFVEV 90
Score = 42.2 bits (99), Expect = 4e-05
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 9 MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
+ E ++ N + + DE+ G + +
Sbjct: 98 VCELDLVFNFYKVYTVVDEMFLAGEIRETSQTK 130
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 158
Score = 36.6 bits (84), Expect = 0.004
Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 55 IVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKT 112
+ + ++ + + ++ +++ + K +F+E ++ VY+ LY
Sbjct: 15 RLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQ 74
Query: 113 SNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKN 148
N L LE + + + + F S E+ +
Sbjct: 75 DNELITLELIHRYVELL-----DKYFGSVCELDIIF 105
Score = 30.1 bits (67), Expect = 0.67
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 2 SLLDGLF--MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
LLD F + E ++ N F DE + G + +
Sbjct: 89 ELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKS 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.005
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 28 IVALGYRESVNLAQEATK-IKLKNIKIAIVSRQFVEMTRARIEGLL 72
VA G +++ IKL+ I I + ++ +EG L
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQ---KSLSLEEVEGHL 1895
Score = 35.8 bits (82), Expect = 0.025
Identities = 58/363 (15%), Positives = 99/363 (27%), Gaps = 143/363 (39%)
Query: 3 LLDGLFMDENEVTDNAFSLIFAFD-------EIVA--LGYRESVNLAQEATKIKLKNIKI 53
L + E T+ FA D E+V LGY S+ +
Sbjct: 33 LQEQFNKILPEPTEG-----FAADDEPTTPAELVGKFLGYVSSLVEPSKVG--------- 78
Query: 54 AIVSRQFVEMTRARIEGLLAAFPKLMSSGKQ-HTFVETDSVRYVYQPLEKLYMLLITTKT 112
QF ++ L F G H L+
Sbjct: 79 -----QFDQVLNL----CLTEFENCYLEGNDIHALAAK----------------LLQEND 113
Query: 113 SNILEDLETLRLF-------SRVTHPNVDKELFKS----KTEI-------GLKNPSKPF- 153
+ +++ E ++ + R + LF++ ++ G N F
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG--NTDDYFE 171
Query: 154 ----------PLNNDIGVLKWRFTSTDESCLPLSINCWPSDNG---SGGCDVNIEYELEH 200
L D+ + E+ L D + G ++ +E+ LE+
Sbjct: 172 ELRDLYQTYHVLVGDL------IKFSAETLSELIRT--TLDAEKVFTQGLNI-LEW-LEN 221
Query: 201 EEKE-----LNQVTISIPL--------------PLHCTPNVTECDGDYNYDARKNTLTWS 241
L + IS PL L TP G+ K S
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP------GEL-RSYLKGATGHS 274
Query: 242 LALIDSSNKSGALEFSAPSASQSDFFPLQVSFSCNQSYANIKIFIEKLFL--LHC---TP 296
L+ A+ A + + S SF + +++ I LF + C P
Sbjct: 275 QGLV------TAV---AIAETDSW-----ESF-----FVSVRKAITVLFFIGVRCYEAYP 315
Query: 297 NVT 299
N +
Sbjct: 316 NTS 318
Score = 33.5 bits (76), Expect = 0.12
Identities = 20/170 (11%), Positives = 44/170 (25%), Gaps = 66/170 (38%)
Query: 135 KELFK------------SKTEIGLKNPSKPFPLNNDIGVLKWR---FTSTDESCLPLSIN 179
++++ S +I + NP + R E+ + +
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 180 CWPSDNGSGGCDVNIE---YELEHEEKELNQVTISIPLPLHCTPNVTECDGDYNYDARKN 236
++N Y E+ L+ T+
Sbjct: 1703 TEKIFK-----EINEHSTSYTFRSEKGLLSA---------------TQ-----------F 1731
Query: 237 T----LTWSLAL--------IDSSNKSGA---L-EFSAPSASQSDFFPLQ 270
T A + ++ + A L E++A AS +D ++
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA-LASLADVMSIE 1780
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.017
Identities = 59/363 (16%), Positives = 105/363 (28%), Gaps = 73/363 (20%)
Query: 9 MDENEVTDNAFSLIFA--FDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQFVEMTRA 66
D +V D S++ D I+ S + + K ++ ++FVE
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVS-GTLRLFWTLLSKQEEMV---QKFVE---- 84
Query: 67 RIEGLLAAFPKLMSS-GKQHTFVETDSVRYVYQPLEKLY--MLLITTKTSNILEDLETLR 123
E L + LMS + + Y+ Q ++LY + + L+ LR
Sbjct: 85 --EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 124 --LFSRVTHPNVDKELF------KS--------KTEIGLKNPSKPFPLNNDIGVLKWRFT 167
L NV + K+ ++ K K F LN +
Sbjct: 142 QALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LK----NCN 193
Query: 168 STDESCLPLSINCWPSD-NGSGGCD--VNIEYELEHEEKELNQVTISIPLP--------- 215
S + L + D N + D NI+ + + EL ++ S P
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 216 ----------LHCTPNVTECDGDYNYDARKNTLTWSLALIDSS---NKSGALEFSAPSAS 262
L C +T D T ++L S
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 263 QSDF-FPLQVSFSCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARKNTLTWSLALI 321
P +V + + I E + T + + N D + SL ++
Sbjct: 313 CRPQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVL 366
Query: 322 DSS 324
+ +
Sbjct: 367 EPA 369
Score = 35.2 bits (80), Expect = 0.038
Identities = 40/283 (14%), Positives = 73/283 (25%), Gaps = 121/283 (42%)
Query: 106 LLITTKTSNILEDL--------------------ETLRLFSRVTHPNVDKELFKSKTEIG 145
+L+TT+ + + L E L + +D E+
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVL 323
Query: 146 LKNP---------SKPFPLNND--IGVLKWRFTSTDESCL----P---------LSINCW 181
NP + D V + T+ ES L P LS+ +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--F 381
Query: 182 PSDNGSGGCDVNI-------------EYELEHEEKEL----------NQVTISIP---LP 215
P +I + ++ +L + TISIP L
Sbjct: 382 PP-------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 216 LHCTPNVTECDGDYNYDARKNTLTWSLALIDSSNKSGALEFSAPSASQSD--FFPLQVSF 273
L + + +Y ++D N + D F+ S
Sbjct: 435 LKV-----KLENEYALHRS---------IVDHYNIPKTFDSDDLIPPYLDQYFY----SH 476
Query: 274 -----SCNQSYANIKIFIEKLFLLHCTPNVTECDGDYNYDARK 311
+ + +F +FL D+ + +K
Sbjct: 477 IGHHLKNIEHPERMTLF-RMVFL------------DFRFLEQK 506
Score = 30.2 bits (67), Expect = 1.2
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 27/114 (23%)
Query: 18 AFSLIFAF--DEIVALGYRESVNLAQEATKIK--LKNIKIAIVSRQFVEMTRARIEGLLA 73
S+I D + + VN + T I+ L ++ A + F L+
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---------LS 379
Query: 74 AFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSR 127
FP S L ++ +I + ++ L L +
Sbjct: 380 VFP--------------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 29.5 bits (67), Expect = 1.5
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 25 FDEIVALGYRESVNLA----QEATKIKLKNIKIAIVSR--QFVEMTRARIEGLLAAFPK 77
+ + ++ L E + KNI++A++ R + IE +A K
Sbjct: 176 YTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEK 234
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 27.9 bits (63), Expect = 4.3
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 25 FDEIVALGYRESVNLAQEA------TKIKLKNIKIAIVSR---QFVEMTRARIEGLLAAF 75
+ + ++V A K I++ +V+ +F +T A I+ L A
Sbjct: 183 VKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242
Query: 76 PK 77
+
Sbjct: 243 AE 244
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 28.0 bits (63), Expect = 5.1
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 10/61 (16%)
Query: 25 FDEIVALGYRESVNLA--------QEATKIKLKNIKIAIVSR--QFVEMTRARIEGLLAA 74
E + E V + KN+ I IV + +F + L
Sbjct: 176 MSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEG 235
Query: 75 F 75
Sbjct: 236 L 236
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 27.6 bits (62), Expect = 5.2
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 34 RESVNLA----QEATKIKLKNIKIAIVSRQ--FVEMTRARIEGLLAAFPK 77
E V L E + KNI+I +V V ++ I + +
Sbjct: 187 EECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ 236
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 26.8 bits (60), Expect = 9.6
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 31 LGYRESVNLAQEA------TKIKLKNIKIAIVSR-QFVEMTRARIEGLLAA 74
+ + V A T+ ++++ + ++ +F ++ IE L A
Sbjct: 188 ESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVA 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,143,566
Number of extensions: 292729
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 28
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)