RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16332
         (359 letters)



>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
           (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 277

 Score = 96.3 bits (239), Expect = 2e-23
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 22/182 (12%)

Query: 109 TTKTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTS 168
           + K S  ++D           H  V    F S+  I    P   F L         R+ +
Sbjct: 78  SGKQSIAIDDCTF--------HQCVRLSKFDSERSISFIPPDGEFEL--------MRYRT 121

Query: 169 TDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEK-ELNQVTISIPLPLHCT-PNVTECD 226
           T +  LP  +     + G    +V +  +   +      ++ + IP PL+ +   V    
Sbjct: 122 TKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMK 181

Query: 227 GDYNYDARKNTLTWSLALID---SSNKSGALEF-SAPSASQSDFFPLQVSFSCNQSYANI 282
           G   Y A +N + W +  +     S  S  +E        +    P+ ++F    + + +
Sbjct: 182 GKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGL 241

Query: 283 KI 284
           K+
Sbjct: 242 KV 243



 Score = 35.0 bits (80), Expect = 0.008
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 296 PNVTECDGDYNYDARKNTLTWSLALID---SSNKSGALEF-SAPSASQSDFFPLQVSFSC 351
             V    G   Y A +N + W +  +     S  S  +E        +    P+ ++F  
Sbjct: 175 VQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEV 234

Query: 352 NQSYANIK 359
             + + +K
Sbjct: 235 PFAPSGLK 242


>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
           protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 142

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 55  IVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKT 112
            +++ +++      + L+     +++    K   FVE  + + +Y+    LY  +     
Sbjct: 15  RLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVN 74

Query: 113 SNILEDLETLRLF 125
            N L  LE +  F
Sbjct: 75  DNNLAYLEAIHNF 87



 Score = 33.3 bits (76), Expect = 0.015
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 4   LDGLF--MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ 41
           L+  F  + E ++  N + +    DE+   G     +  +
Sbjct: 91  LNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTK 130


>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly
           protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 141

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 55  IVSRQFV-EMTRARIEGLLAAFPKLMSSGKQHT---FVETDSVRYVYQPLEKLYMLLITT 110
           ++SR +  ++ R  ++    AF   +   +Q             + +     +++  +T 
Sbjct: 15  LISRVYRDDIGRNAVD----AFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTK 70

Query: 111 KTSNILEDLETLRLFSRVTHPNVDKELFKSKTEIGLKN 148
           +  N     E L     V         F   +E  +KN
Sbjct: 71  QNVNAAMVFEFLYKMCDVM-----AAYFGKISEENIKN 103



 Score = 35.6 bits (82), Expect = 0.002
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 9   MDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIK 52
           + E  + +N   +    DEI+  GY ++       T I  + IK
Sbjct: 96  ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIK 139


>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia
          oleracea) [TaxId: 3562]}
          Length = 155

 Score = 26.9 bits (59), Expect = 2.5
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 42 EATKIKLKNIKIAIV-SRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVY 97
          E    K ++ + AIV +R    +TR  +EG L  F K   +          +     
Sbjct: 5  EGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGV 61


>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 243

 Score = 26.9 bits (59), Expect = 3.4
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 15/79 (18%)

Query: 1   MSLLDGLFMDENEVTDNAFSLIFAFDEIVALGYRESVNLAQEATKIKLKNIKIAIVSRQ- 59
              L+  + DE   TD         D  + L  +       E  +   KNI++A++ R  
Sbjct: 168 REFLEKNYTDEAIETD---------DLTIKLVIKA----LLEVVQSGGKNIELAVMRRDQ 214

Query: 60  -FVEMTRARIEGLLAAFPK 77
               +    IE  +A   K
Sbjct: 215 SLKILNPEEIEKYVAEIEK 233


>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 241

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 35  ESVNLA----QEATKIKLKNIKIAIVSR--QFVEMTRARIEGLLAAFPK 77
           E V L      E  +   KNI+I +V      V ++   I   +    +
Sbjct: 188 ECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ 236


>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 25.5 bits (56), Expect = 6.9
 Identities = 9/33 (27%), Positives = 11/33 (33%)

Query: 140 SKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDES 172
              +  L +     PL  D     WR    DES
Sbjct: 20  QAAQATLDDFETLPPLGQDAASKAWRKNKMDES 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,264,854
Number of extensions: 57453
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 10
Length of query: 359
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,226,816
Effective search space: 334920768
Effective search space used: 334920768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)