RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16333
(192 letters)
>gnl|CDD|220736 pfam10409, PTEN_C2, C2 domain of PTEN tumour-suppressor protein.
This is the C2 domain-like domain, in greek key form, of
the PTEN protein, phosphatidyl-inositol triphosphate
phosphatase, and it is the C-terminus. This domain may
well include a CBR3 loop which means it plays a central
role in membrane binding. This domain associates across
an extensive interface with the N-terminal phosphatase
domain DSPc (pfam00782) suggesting that the C2 domain
productively positions the catalytic part of the protein
onto the membrane.
Length = 129
Score = 54.6 bits (132), Expect = 5e-10
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 63 INSAPLYLTHVTVLGAPSFDRCGGGCHAFLKIYEGLVCVYTSGV--HGVGSEARQFTVNV 120
PL+L + + G P+F GGGC +++IY V TS + + +
Sbjct: 1 PPPKPLFLKSIILHGIPNFKS-GGGCRPYIRIYNNDKKVSTSKKYEILKKYQQKDCIILF 59
Query: 121 AGERQRRGLQLRGDILLKCYHRGNKDR 147
GL ++GD+L++ YH+G K
Sbjct: 60 PK-----GLPVQGDVLIEFYHKGLKLS 81
>gnl|CDD|219852 pfam08457, Sfi1, Sfi1 spindle body protein. This is a family of
fungal spindle pole body proteins that play a role in
spindle body duplication. They contain binding sites for
calmodulin-like proteins called centrins which are
present in microtubule-organising centres.
Length = 537
Score = 30.1 bits (68), Expect = 0.69
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 151 VVSAYMHYSNICGTADQALDRFAMKRFLD 179
S H + AD+A F K L
Sbjct: 375 WRSKLQHVVKLNAWADKARFYFLSKSALK 403
>gnl|CDD|224037 COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase
subunits [DNA replication, recombination, and repair].
Length = 767
Score = 28.4 bits (63), Expect = 2.4
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 98 LVCVYTSGVHGVGSEARQFT-VNVAGERQRRGLQLRGDILLKCYHRGNKDRI 148
L V ++ G +NVA R +R L + G K I
Sbjct: 690 LSLVRSNDDKGEIGFLGDPRRLNVALTRAKRKLIVVGSSSTLESDPLYKRLI 741
>gnl|CDD|117685 pfam09129, Chol_subst-bind, Cholesterol oxidase, substrate-binding.
The substrate-binding domain found in Cholesterol
oxidase is composed of an eight-stranded mixed
beta-pleated sheet and six alpha-helices. This domain is
positioned over the isoalloxazine ring system of the FAD
cofactor bound by FAD_binding_4 (PF:PF01565) and forms
the roof of the active site cavity, allowing for
catalysis of oxidation and isomerisation of cholesterol
to cholest-4-en-3-one.
Length = 321
Score = 27.6 bits (61), Expect = 4.4
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 17 PSLPYTGVMVSSPMNRPFIDNIFPIATPPLTLYVDYFSGLLSANIRINSAPLY---LTHV 73
P+ P VS P N PF DNI P++ D + + N + APL+ +
Sbjct: 56 PTKPDGAREVSGPYNYPFSDNI----PEPIS---DLIGAINAGNPGL--APLFGKAQYEI 106
Query: 74 TVLG 77
T LG
Sbjct: 107 TKLG 110
>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c,
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate
dehydrogenase (DHB DH)-like, classical (c) SDR. DHB DH
(aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate
dehydrogenase) catalyzes the NAD-dependent conversion of
1,2-dihydroxycyclohexa-3,4-diene carboxylate to a
catechol. This subgroup also contains Pseudomonas putida
F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate
dehydrogenase, the second enzyme in the pathway for
catabolism of p-cumate catabolism. This subgroup shares
the glycine-rich NAD-binding motif of the classical SDRs
and shares the same catalytic triad; however, the
upstream Asn implicated in cofactor binding or catalysis
in other SDRs is generally substituted by a Ser. SDRs
are a functionally diverse family of oxidoreductases
that have a single domain with a structurally conserved
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 256
Score = 27.1 bits (60), Expect = 5.2
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 95 YEGLVCVYTSGVHGVGSEARQFTVNVAGERQRRGLQLRGDIL--LKCYHRGNKDRIGVVV 152
+EG V V T G+G R +AGE R L R +++ + D V
Sbjct: 2 FEGKVVVVTGAAQGIG---RGVAERLAGEGARVLLVDRSELVHEVLAEILAAGDAAHVHT 58
Query: 153 SAYMHYSNICGTADQALDRF 172
+ Y+ G A++RF
Sbjct: 59 ADLETYAGAQGVVRAAVERF 78
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 27.1 bits (60), Expect = 7.4
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 101 VYTSGVHGVGSEARQFTVNVAGERQRRGLQL------RGD 134
V G G GS +F N+ G QR GL L RGD
Sbjct: 922 VREGGQFGTGSRVLRF--NLPGALQRSGLTLGQFIAIRGD 959
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 26.6 bits (59), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 151 VVSAYMHYSNICGTADQAL 169
+ A++HYS + TAD AL
Sbjct: 287 TLHAFLHYSRMMDTADDAL 305
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 26.6 bits (59), Expect = 9.7
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 90 AFLKIYEGLVCVYTSGVHGVGSEARQFTVNVAGER 124
+K Y G C Y +G G +T N GER
Sbjct: 244 PLIKDYNGPACAYVTGPLG------GYTANAKGER 272
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.142 0.438
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,914,703
Number of extensions: 912817
Number of successful extensions: 799
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 12
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)