RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16333
(192 letters)
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 53.0 bits (126), Expect = 1e-08
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 10/147 (6%)
Query: 41 IATPPLTLYVDYFSGLLSANIRINSAPLYLTHVTVLGAPSFDRCGGGCHAFLKIYEGLVC 100
+ P YV Y+S LL ++ L + P F GG C+ + + V
Sbjct: 160 VTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFS--GGTCNPQFVVCQLKVK 217
Query: 101 VYTSGVHGVGSEARQFTVNVAGERQRRGLQLRGDILLKCYH-RGNKDRIGVVVSAYMHYS 159
+Y+S E + + L + GDI ++ +H + + + +++
Sbjct: 218 IYSSNSGPTRREDKFMYFEF-----PQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTF 272
Query: 160 NICGTADQALDRFAMKRFLDDKIGDLD 186
I G + D+ + L DLD
Sbjct: 273 FIPGPEEVDNDKEYLVLTLTKN--DLD 297
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 52.3 bits (124), Expect = 1e-08
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 39 FPIATPPLTLYVDYFSGLLSAN-IRINSAPLYLTHVTVLGAPSFDRCGGGCHAFLKIYEG 97
+P Y+ Y LL+ R + PL + +TV P F++ GC + + G
Sbjct: 159 GIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIG 218
Query: 98 LVCVYTSGVHGVGSEARQFTVNVAGERQRRGLQLRGDILLKCYHRGN 144
+YT+ +++ V + ++GD+++ YH +
Sbjct: 219 ETKIYTTCAD--FERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRS 263
Score = 38.8 bits (89), Expect = 5e-04
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 142 RGNKDRIGVVVSAYMHYSNICGTADQALDRFAMKR 176
+ ++V A + N+ T A+ KR
Sbjct: 123 LDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKR 157
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 36.6 bits (83), Expect = 0.003
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 142 RGNKDRIGVVVSAYMHYSNICGTADQALDRFAMKRF---LDDKIGDLDFPS 189
+G K R G +VS+++ TA +AL+ F +R + D ++ S
Sbjct: 127 KGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETAS 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.017
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 48/142 (33%)
Query: 45 PLTLYVDYFSGLLSANIRINSAPLYLTHVTVLGAPSFDRCGGGCHAFLKIYEGLVCVYTS 104
P+ L + +F G IR N Y + F+ G KI++ + +++
Sbjct: 1669 PVNLTI-HFGGEKGKRIREN----YSAMI-------FETIVDGKLKTEKIFKEIN-EHST 1715
Query: 105 GVHGVGSEAR-------Q---FTVNVAGERQRRGLQLRGDILLKCYHRGNKDRIGVVVSA 154
+ Q + A LK +G A
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKA--------AFE---DLK--SKGLIPA-----DA 1757
Query: 155 YM--H----YSNICGTADQALD 170
H Y+ + AD +
Sbjct: 1758 TFAGHSLGEYAALASLAD-VMS 1778
Score = 32.7 bits (74), Expect = 0.075
Identities = 27/212 (12%), Positives = 59/212 (27%), Gaps = 56/212 (26%)
Query: 1 MVLELLRSQSDLKKCHP-------------SLPYTGVMVSSPMNRPFIDNIFPIATPPLT 47
+ EL+R+ D +K + P ++S P++ P I +
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG---------VI 244
Query: 48 LYVDYF-----SGLLSANIRINSAPLYLTHVT-VLGA---------PSFDRCGGGCHAFL 92
Y G +R H ++ A SF +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETDSWESFFVSV---RKAI 300
Query: 93 KI--YEGLVCVYTSGVHGVGSEARQFTVNVAGERQR------RGL---QLRGDILLKCYH 141
+ + G+ C + + ++ E L Q++ + H
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 142 RGNKDRIGV-VVSAYMHYSNICGTADQALDRF 172
++ + +V+ + + G Q+L
Sbjct: 360 LPAGKQVEISLVNGAKNL-VVSGPP-QSLYGL 389
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 31.2 bits (70), Expect = 0.13
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 133 GDILLKCYHRGNKDRIGVVVSAYMHYSNICGTADQALDRFAMKR 176
L+ G R +V + + Y + + +QA+D R
Sbjct: 134 RKTLIHS--YGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLR 175
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.75
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 19/41 (46%)
Query: 9 QSDLKKCHPSL-PYTGVMVSSPMNRPFIDNIFPIATPPLTL 48
Q+ LKK SL Y + D + P L +
Sbjct: 20 QA-LKKLQASLKLY------AD------D-----SAPALAI 42
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 4.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 104 SGVHGVGSEARQFTVNVAGE 123
G +A +F VAG+
Sbjct: 970 KGATLYIPKALRFDRLVAGQ 989
>2qck_A Flavin reductase domain protein; YP_831077.1, flavin reducta
domain, structural genomics, joint center for structural
GE JCSG; 1.90A {Arthrobacter SP}
Length = 167
Score = 26.4 bits (59), Expect = 4.2
Identities = 3/30 (10%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 98 LVCV-YTSGVHGVGSEARQFTVNVAGERQR 126
+ +S + V++ G +
Sbjct: 54 TFNMARSSSSWPAIANTTHIGVHMLGLDNQ 83
>2ecu_A Flavin reductase (HPAC) of 4-hydroxyphenylacetate monooxygnease;
flavin diffusible, two-component monooxyge
oxidoreductase; HET: 1PG 12P; 1.30A {Thermus
thermophilus} PDB: 2ecr_A* 2ed4_A*
Length = 149
Score = 26.3 bits (59), Expect = 5.0
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 98 LVCV-YTSGVHGVGSEARQFTVNVAGERQR 126
+ V + + V A FTV++ E Q
Sbjct: 46 ALAVSERAKLLPVLEGAGAFTVSLLREGQE 75
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A
{Mycobacterium goodii}
Length = 157
Score = 25.6 bits (57), Expect = 7.9
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 98 LVCV-YTSGVHGVGSEARQFTVNVAGERQR 126
V +S + ++V GE
Sbjct: 48 AFAVQNSSTTWPKLKDLPSLGISVLGEAHD 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 8.5
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 34/117 (29%)
Query: 102 YTSGVHGVGSEARQFTVNVAGERQRRGLQLRGDILLKCYHRGNKDRIGVVVSAYMHYSNI 161
T + + + V + E + + K + + D I + Y YS+I
Sbjct: 424 STISIPSI---YLELKVKLENEYALHRSIVDHYNIPKTFD--SDDLIPPYLDQYF-YSHI 477
Query: 162 CG----TADQALDRFAMK-------RFLDDKI----------GDL-----DFPSYKR 192
G + +R + RFL+ KI G + YK
Sbjct: 478 -GHHLKNIEHP-ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.142 0.438
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,036,000
Number of extensions: 174091
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 16
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)