BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16337
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9U1H8|FACE2_DROME CAAX prenyl protease 2 OS=Drosophila melanogaster GN=Sras PE=2 SV=3
Length = 302
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 67/103 (65%)
Query: 2 ERLQSGMSWRHALLISCFQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFPDFEE 61
ERL G+ ALLI FQF YT+LFG YSAFLF RTGH +AP L HAFCNHMG PD ++
Sbjct: 199 ERLSLGVELSTALLIGLFQFIYTTLFGFYSAFLFARTGHVMAPILVHAFCNHMGLPDLQD 258
Query: 62 IYAFGEPRRSAVLCVCVVGLIGWAFLLGPMTSPALYSNNLWWR 104
++ RR + + + G +GW FL+ T P++Y N L+W
Sbjct: 259 LWQQDLWRRVVAIILYLAGFVGWMFLVPLATDPSIYDNTLYWN 301
>sp|Q8GW19|FACE2_ARATH CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2
Length = 311
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 4 LQSGMSWRHALLISCFQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFPDFEEIY 63
++ S+ A LI Q YT +FG Y++FLF+RTGH AP AH FCN+MG P +Y
Sbjct: 207 IRHNRSYLRASLIVGLQLGYTVIFGAYASFLFIRTGHLAAPLFAHIFCNYMGLP---VLY 263
Query: 64 AFGEPRRSAVLCVCVVGLIGWAFLLGPMTSPALYSNN 100
A G+ SA + G++G+ LL P+T P +Y+++
Sbjct: 264 ANGKGLVSAAF---LGGVVGFVLLLFPLTKPLMYNDS 297
>sp|Q9Y256|FACE2_HUMAN CAAX prenyl protease 2 OS=Homo sapiens GN=RCE1 PE=1 SV=1
Length = 329
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 15 LISCFQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFPDFEEIYAFGEPRRSAVL 74
L + FQFSYT++FG Y+AFLF+RTGH + P L H+FCN+MGFP A P+R +L
Sbjct: 228 LSAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAV--CAALEHPQRRPLL 285
>sp|P57791|FACE2_MOUSE CAAX prenyl protease 2 OS=Mus musculus GN=Rce1 PE=2 SV=1
Length = 329
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 1 MERLQSGMSWRHALLISC-FQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFP 57
+E+L+ S ++ +S FQFSYT++FG Y+AFLF+RTGH + P L H+FCN+MGFP
Sbjct: 213 IEQLRFRQSSVGSIFVSAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFP 270
>sp|Q03530|RCE1_YEAST CAAX prenyl protease 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RCE1 PE=1 SV=1
Length = 315
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 ERLQSG-MSWRHALLISCFQFSYTSLFGGYSAFLFVRT-GHFVAPFLAHAFCNHMGFP 57
E+LQ G M+ LL +CFQ YT+LFGG + F+FVRT G+ + HA CN MGFP
Sbjct: 200 EQLQEGSMTTVSILLTTCFQILYTTLFGGLTKFVFVRTGGNLWCCIILHALCNIMGFP 257
>sp|O94448|RCE1_SCHPO Probable CAAX prenyl protease 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1687.02 PE=3 SV=1
Length = 271
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 13 ALLISCFQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFPDF 59
A L + QFSYT++FG Y+ LF+ T FL HAFCN MG P
Sbjct: 178 AALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSFLVHAFCNSMGLPTL 224
>sp|A6H7A0|FACE2_BOVIN CAAX prenyl protease 2 OS=Bos taurus GN=RCE1 PE=2 SV=1
Length = 308
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 34 LFVRTGHFVAPFLAHAFCNHMGFPDFEEIYAFGEPRRSAVL 74
+F+ GH + P L H+FCN+MGFP A P+R +L
Sbjct: 226 IFLSAGHLIGPVLCHSFCNYMGFPAV--CAALEHPQRRPLL 264
>sp|B0BMW8|FACE2_RAT CAAX prenyl protease 2 OS=Rattus norvegicus GN=Rce1 PE=2 SV=1
Length = 308
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 34 LFVRTGHFVAPFLAHAFCNHMGFP 57
+F+ GH + P L H+FCN+MGFP
Sbjct: 226 IFLSAGHLIGPVLCHSFCNYMGFP 249
>sp|P12383|PDR1_YEAST Transcription factor PDR1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PDR1 PE=1 SV=2
Length = 1068
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 59 FEEIYAFGEPRRSAVLCVCVVGLIGWAFLLGPMTSPALYSNNLWWR 104
EIY F + AV V VGL W F +G + A NLWW+
Sbjct: 484 LSEIYGFEKVLNVAVHFVSRVGLSRWEFYVGLDENFAERRRNLWWK 529
>sp|Q96R30|OR2V2_HUMAN Olfactory receptor 2V2 OS=Homo sapiens GN=OR2V2 PE=2 SV=3
Length = 315
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 3 RLQSGMSWRHALLISCFQFSYTSLFGGYSAFLFVRTGHFVAP 44
++ S +W+ AL + +LF G + F+++R H+ AP
Sbjct: 228 QMHSAQAWKKALATCSSHLTAVTLFYGAAMFIYLRPRHYRAP 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.143 0.508
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,400,953
Number of Sequences: 539616
Number of extensions: 1618442
Number of successful extensions: 3095
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3078
Number of HSP's gapped (non-prelim): 12
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)