Query psy16337
Match_columns 104
No_of_seqs 110 out of 202
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:48:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4130|consensus 100.0 5.8E-35 1.3E-39 227.2 9.1 103 1-103 181-288 (291)
2 PF02517 Abi: CAAX protease se 98.3 1.9E-06 4.1E-11 55.5 4.8 36 19-54 56-91 (91)
3 TIGR03008 pepcterm_CAAX CAAX p 97.1 0.00072 1.6E-08 52.0 4.3 36 19-54 173-208 (222)
4 COG1266 Predicted metal-depend 96.3 0.0082 1.8E-07 43.1 4.6 36 18-53 177-212 (226)
5 PHA02758 hypothetical protein; 74.8 7.2 0.00016 31.1 4.9 49 37-89 270-318 (321)
6 PF04884 DUF647: Vitamin B6 ph 38.8 85 0.0018 24.7 5.1 54 8-61 166-228 (250)
7 COG2443 Sss1 Preprotein transl 36.5 64 0.0014 20.6 3.4 19 70-88 38-56 (65)
8 PF11177 DUF2964: Protein of u 36.1 50 0.0011 20.9 2.8 21 73-93 40-60 (62)
9 cd02639 R3H_RRM R3H domain of 35.8 22 0.00048 22.1 1.2 17 45-61 32-48 (60)
10 PF12056 DUF3537: Protein of u 31.9 44 0.00096 28.3 2.7 23 31-54 165-188 (398)
11 PRK09400 secE preprotein trans 29.1 1E+02 0.0022 19.2 3.4 19 70-88 37-55 (61)
12 PF12911 OppC_N: N-terminal TM 27.5 78 0.0017 18.3 2.6 34 62-95 8-41 (56)
13 COG4449 Predicted protease of 27.4 74 0.0016 28.4 3.4 28 21-48 779-806 (827)
14 PF14028 SpaB_C: SpaB C-termin 26.2 40 0.00088 25.4 1.4 20 42-61 258-277 (283)
15 PTZ00101 rhomboid-1 protease; 26.1 68 0.0015 25.5 2.7 39 46-84 115-153 (278)
16 KOG2065|consensus 24.2 35 0.00076 30.1 0.8 28 27-54 578-610 (679)
17 TIGR00327 secE_euk_arch protei 23.3 1.5E+02 0.0033 18.5 3.4 19 70-88 33-51 (61)
18 PF13367 PrsW-protease: Protea 22.0 3.1E+02 0.0066 19.6 5.7 45 11-56 119-173 (191)
19 PF15141 DUF4574: Domain of un 20.7 58 0.0013 21.8 1.2 26 70-95 5-30 (84)
20 PF15061 DUF4538: Domain of un 20.2 59 0.0013 20.4 1.1 21 78-98 17-37 (58)
21 PRK13622 psbV cytochrome c-550 20.0 65 0.0014 24.4 1.4 22 69-90 16-37 (180)
22 KOG3500|consensus 20.0 1.4E+02 0.003 20.0 2.9 27 75-101 44-70 (84)
No 1
>KOG4130|consensus
Probab=100.00 E-value=5.8e-35 Score=227.17 Aligned_cols=103 Identities=49% Similarity=0.858 Sum_probs=98.0
Q ss_pred CcchhcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhhhccCCCChHHHhhcCCCchHHHHHHHHH
Q psy16337 1 MERLQSG-MSWRHALLISCFQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFPDFEEIYAFGEPRRSAVLCVCVV 79 (104)
Q Consensus 1 ~e~~~~g-~~~~~a~~~~~fQ~~YTtlFG~ya~flflrTg~l~a~i~~HafCN~mG~P~~~~~~~~~~~~r~~~~~~y~~ 79 (104)
+|+++.| ++...|+++++|||+|||+||+|++|+|+||||+|+||++|||||+||+|++.+..+++.++|+.....|..
T Consensus 181 yEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaflF~rTghl~~~iLvHAfCN~MGfP~l~~~~~~~~~rri~a~v~~ll 260 (291)
T KOG4130|consen 181 YEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAFLFVRTGHLWCPILVHAFCNIMGFPNLHFTVVDKKARRISALVSYLL 260 (291)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHhhcCChhHHHHHcCcccchHHHHHHHHH
Confidence 5999999 999999999999999999999999999999999999999999999999999999999888889887788999
Q ss_pred HHHHHHHhhccCCCCcCccCc----ccC
Q psy16337 80 GLIGWAFLLGPMTSPALYSNN----LWW 103 (104)
Q Consensus 80 Gi~~f~~~L~~lT~p~~y~~~----~~~ 103 (104)
|+.+|..++.++|||+.|++. +||
T Consensus 261 gv~~fllllgl~t~~~~~d~lp~~~ly~ 288 (291)
T KOG4130|consen 261 GVYFFLLLLGLITDPDTYDTLPGTPLYR 288 (291)
T ss_pred HHHHHHHHhccccCchhhccCCCCccee
Confidence 999999999999999999887 566
No 2
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=98.26 E-value=1.9e-06 Score=55.47 Aligned_cols=36 Identities=42% Similarity=0.661 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhhhcc
Q psy16337 19 FQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHM 54 (104)
Q Consensus 19 fQ~~YTtlFG~ya~flflrTg~l~a~i~~HafCN~m 54 (104)
.|+.++.++|...+++|.||||+++++++|+.+|.+
T Consensus 56 ~~~~~~~~~g~~~~~~~~~t~sl~~~i~~H~~~n~~ 91 (91)
T PF02517_consen 56 PQFIYAFLFGLLFGYLYLRTGSLWAAIIAHALWNLV 91 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcC
Confidence 458999999999999999999999999999999975
No 3
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=97.10 E-value=0.00072 Score=52.03 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhhhcc
Q psy16337 19 FQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHM 54 (104)
Q Consensus 19 fQ~~YTtlFG~ya~flflrTg~l~a~i~~HafCN~m 54 (104)
.|.....+.|..-+++|.||||++.||++|+..|.+
T Consensus 173 ~~~~~~~l~Gli~~~l~~~tgsL~~~I~~H~~~N~l 208 (222)
T TIGR03008 173 HLIVAGLIAGLAYNLLLLRTGSIMACILAHAVTNGL 208 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 366778888999999999999999999999999974
No 4
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=96.26 E-value=0.0082 Score=43.06 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhhhc
Q psy16337 18 CFQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNH 53 (104)
Q Consensus 18 ~fQ~~YTtlFG~ya~flflrTg~l~a~i~~HafCN~ 53 (104)
...+.+..++|..-+++|.||||++.++..|+..|.
T Consensus 177 ~~~~~~~~~~gli~~~~~~~t~~l~~~i~~H~~~N~ 212 (226)
T COG1266 177 LLYFLLYFIAGLILGLLYLRTGSLWVPILLHALINL 212 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 366778889999999999999999999999999997
No 5
>PHA02758 hypothetical protein; Provisional
Probab=74.78 E-value=7.2 Score=31.15 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=35.3
Q ss_pred HhCchHHHHHHHHhhhccCCCChHHHhhcCCCchHHHHHHHHHHHHHHHHhhc
Q psy16337 37 RTGHFVAPFLAHAFCNHMGFPDFEEIYAFGEPRRSAVLCVCVVGLIGWAFLLG 89 (104)
Q Consensus 37 rTg~l~a~i~~HafCN~mG~P~~~~~~~~~~~~r~~~~~~y~~Gi~~f~~~L~ 89 (104)
+-|.+++.|+-|+|-|.| ...|.+..+ +...+...+..+|+++|...+.
T Consensus 270 ke~giiasiighafynag-vsaf~d~ik---gnpl~aiiliflglvgflyal~ 318 (321)
T PHA02758 270 KEGGIIASIIGHAFYNAG-VSAFADGIK---GNPLLAIILIFLGLVGFLYALF 318 (321)
T ss_pred hcCCchhhhhhHHHHHhH-HHHHHHHhc---cChHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999976 223333222 3455567788999999987654
No 6
>PF04884 DUF647: Vitamin B6 photo-protection and homoeostasis; InterPro: IPR006968 This is a family of proteins of unknown function, restricted to eukaryotes.
Probab=38.77 E-value=85 Score=24.71 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---------hHHHHHHHHhhhccCCCChHH
Q psy16337 8 MSWRHALLISCFQFSYTSLFGGYSAFLFVRTGH---------FVAPFLAHAFCNHMGFPDFEE 61 (104)
Q Consensus 8 ~~~~~a~~~~~fQ~~YTtlFG~ya~flflrTg~---------l~a~i~~HafCN~mG~P~~~~ 61 (104)
.++.+.-..-.-|=+-..+.|...+-...+.=+ ......+|.+|||.+.-.+..
T Consensus 166 ~NlaDv~AK~~sQet~~~LlG~~~Gi~l~~~~~~~~~~~~~~f~~l~~~Hl~~ny~avr~v~l 228 (250)
T PF04884_consen 166 NNLADVTAKDGSQETAANLLGMLLGIFLSSLVSGSPSAVWIAFIILSALHLYCNYKAVRAVQL 228 (250)
T ss_pred CcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 455566666666777777777777766655522 245567899999998877653
No 7
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=36.47 E-value=64 Score=20.62 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy16337 70 RSAVLCVCVVGLIGWAFLL 88 (104)
Q Consensus 70 r~~~~~~y~~Gi~~f~~~L 88 (104)
|+.-....++|++||..-+
T Consensus 38 Ki~~~Gi~liG~IGfiI~l 56 (65)
T COG2443 38 KITGLGILLIGIIGFIIYL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455778999999997654
No 8
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=36.06 E-value=50 Score=20.94 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q psy16337 73 VLCVCVVGLIGWAFLLGPMTS 93 (104)
Q Consensus 73 ~~~~y~~Gi~~f~~~L~~lT~ 93 (104)
-....+.|+++|...|.|..+
T Consensus 40 g~~al~~Gv~~fV~~Lnp~~~ 60 (62)
T PF11177_consen 40 GVIALVVGVAGFVVMLNPAPT 60 (62)
T ss_pred HHHHHHHHHHHHHHhCCCCCC
Confidence 357899999999999999865
No 9
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=35.84 E-value=22 Score=22.08 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=14.2
Q ss_pred HHHHHhhhccCCCChHH
Q psy16337 45 FLAHAFCNHMGFPDFEE 61 (104)
Q Consensus 45 i~~HafCN~mG~P~~~~ 61 (104)
-++|..|..||+-..+.
T Consensus 32 riih~la~~lGL~~~s~ 48 (60)
T cd02639 32 RIVHLLASRLGLNHVSD 48 (60)
T ss_pred HHHHHHHHHcCCceEEe
Confidence 36899999999987754
No 10
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.
Probab=31.86 E-value=44 Score=28.25 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred HHHHHHHhC-chHHHHHHHHhhhcc
Q psy16337 31 SAFLFVRTG-HFVAPFLAHAFCNHM 54 (104)
Q Consensus 31 a~flflrTg-~l~a~i~~HafCN~m 54 (104)
++++| ||+ -+.+|++-|-.||.-
T Consensus 165 ~SW~Y-rT~ifl~~CvLFrLiC~LQ 188 (398)
T PF12056_consen 165 ASWLY-RTTIFLLVCVLFRLICNLQ 188 (398)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 77888 888 999999999999964
No 11
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=29.13 E-value=1e+02 Score=19.17 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy16337 70 RSAVLCVCVVGLIGWAFLL 88 (104)
Q Consensus 70 r~~~~~~y~~Gi~~f~~~L 88 (104)
|.......++|++||..-+
T Consensus 37 ~~~~iG~~i~G~iGf~Ikl 55 (61)
T PRK09400 37 KVTGLGILLIGLIGFIIYL 55 (61)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455678889999987654
No 12
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=27.46 E-value=78 Score=18.26 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=18.5
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHhhccCCCCc
Q psy16337 62 IYAFGEPRRSAVLCVCVVGLIGWAFLLGPMTSPA 95 (104)
Q Consensus 62 ~~~~~~~~r~~~~~~y~~Gi~~f~~~L~~lT~p~ 95 (104)
+.++..++|..+.++.++.++.-...+.|+..|-
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333333455556666666555556666666553
No 13
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=27.42 E-value=74 Score=28.39 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHH
Q psy16337 21 FSYTSLFGGYSAFLFVRTGHFVAPFLAH 48 (104)
Q Consensus 21 ~~YTtlFG~ya~flflrTg~l~a~i~~H 48 (104)
+..|.+.|.=++--|--|||+|+.++.|
T Consensus 779 L~ltglLGL~Ctvty~vT~SlW~iV~lH 806 (827)
T COG4449 779 LLLTGLLGLGCTVTYRVTGSLWPIVLLH 806 (827)
T ss_pred HHHHHHHhhhhhhhHHhccchHHHHHHH
Confidence 4567888888899999999999999999
No 14
>PF14028 SpaB_C: SpaB C-terminal domain
Probab=26.25 E-value=40 Score=25.40 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhccCCCChHH
Q psy16337 42 VAPFLAHAFCNHMGFPDFEE 61 (104)
Q Consensus 42 ~a~i~~HafCN~mG~P~~~~ 61 (104)
+..-.+|+.||=+|+..-.+
T Consensus 258 il~S~iHm~~NRlG~~~~~E 277 (283)
T PF14028_consen 258 ILGSLIHMHCNRLGVDRAEE 277 (283)
T ss_pred HHHHHHHHHhhcCCCCHHHH
Confidence 33445899999999988776
No 15
>PTZ00101 rhomboid-1 protease; Provisional
Probab=26.10 E-value=68 Score=25.52 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=22.1
Q ss_pred HHHHhhhccCCCChHHHhhcCCCchHHHHHHHHHHHHHH
Q psy16337 46 LAHAFCNHMGFPDFEEIYAFGEPRRSAVLCVCVVGLIGW 84 (104)
Q Consensus 46 ~~HafCN~mG~P~~~~~~~~~~~~r~~~~~~y~~Gi~~f 84 (104)
+.|.+.|.+.+=.+....|+...++.....-++.|+.+-
T Consensus 115 ~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~ 153 (278)
T PTZ00101 115 IFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGN 153 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 457899988766666555543223333334455555553
No 16
>KOG2065|consensus
Probab=24.23 E-value=35 Score=30.12 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCchHHHH-----HHHHhhhcc
Q psy16337 27 FGGYSAFLFVRTGHFVAPF-----LAHAFCNHM 54 (104)
Q Consensus 27 FG~ya~flflrTg~l~a~i-----~~HafCN~m 54 (104)
-..+.+-.|+--+.+..+. +||.|||.|
T Consensus 578 LsnllsqsFll~~pV~~~L~~i~~lC~~Fcn~~ 610 (679)
T KOG2065|consen 578 LSNLLSQSFLLNEPVYGTLLKIFGLCEKFCNHM 610 (679)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3344444566556555554 699999999
No 17
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=23.34 E-value=1.5e+02 Score=18.49 Aligned_cols=19 Identities=21% Similarity=0.585 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy16337 70 RSAVLCVCVVGLIGWAFLL 88 (104)
Q Consensus 70 r~~~~~~y~~Gi~~f~~~L 88 (104)
+.......++|++||..-|
T Consensus 33 k~t~iG~~i~G~IGf~Ikl 51 (61)
T TIGR00327 33 KVTGIGIIIVGIIGYIIKI 51 (61)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445678889999987654
No 18
>PF13367 PrsW-protease: Protease prsW family
Probab=21.95 E-value=3.1e+02 Score=19.62 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CchHHHHHHHHhhhccCC
Q psy16337 11 RHALLISCFQFSYTSLFGGYSAFLFVRT----------GHFVAPFLAHAFCNHMGF 56 (104)
Q Consensus 11 ~~a~~~~~fQ~~YTtlFG~ya~flflrT----------g~l~a~i~~HafCN~mG~ 56 (104)
.+.+........+|.+.|...+..- |. +-+..+++.|..=|..-.
T Consensus 119 ~R~~~~~~~H~~~t~i~g~~l~~~~-~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~ 173 (191)
T PF13367_consen 119 LRGITSVPGHALFTAIFGYGLGLAK-RRRKRGFRLALLLGFLLAVLLHGLWNFPLS 173 (191)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344445666777777775555444 21 235667777777776533
No 19
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=20.66 E-value=58 Score=21.84 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCc
Q psy16337 70 RSAVLCVCVVGLIGWAFLLGPMTSPA 95 (104)
Q Consensus 70 r~~~~~~y~~Gi~~f~~~L~~lT~p~ 95 (104)
|.+..+++++|..+-...|+-||+|.
T Consensus 5 r~~~~~~~llG~GGvG~~L~~LvtPg 30 (84)
T PF15141_consen 5 RKALSVVALLGFGGVGYALFVLVTPG 30 (84)
T ss_pred HHHHHHHHHHHccchhheeeeEeCCc
Confidence 44556778888889999999999996
No 20
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=20.23 E-value=59 Score=20.38 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhccCCCCcCcc
Q psy16337 78 VVGLIGWAFLLGPMTSPALYS 98 (104)
Q Consensus 78 ~~Gi~~f~~~L~~lT~p~~y~ 98 (104)
++|+.++-..+.|+.+|+.|.
T Consensus 17 ~iG~a~Ypi~~~Pmm~~eeYk 37 (58)
T PF15061_consen 17 LIGAALYPIYFRPMMNPEEYK 37 (58)
T ss_pred HHHHHHhhhhcccccChHHHH
Confidence 344455556688999999884
No 21
>PRK13622 psbV cytochrome c-550; Provisional
Probab=20.05 E-value=65 Score=24.36 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHhhcc
Q psy16337 69 RRSAVLCVCVVGLIGWAFLLGP 90 (104)
Q Consensus 69 ~r~~~~~~y~~Gi~~f~~~L~~ 90 (104)
||.+++..+..|..+|.+.|.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~ 37 (180)
T PRK13622 16 RRRLLILILAAGMAGFAWGLAP 37 (180)
T ss_pred HHHHHHHHHHhhhhhhhccCCc
Confidence 4555677889999999998876
No 22
>KOG3500|consensus
Probab=20.00 E-value=1.4e+02 Score=20.04 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhccCCCCcCccCcc
Q psy16337 75 CVCVVGLIGWAFLLGPMTSPALYSNNL 101 (104)
Q Consensus 75 ~~y~~Gi~~f~~~L~~lT~p~~y~~~~ 101 (104)
+++..=++.|...+.||+.|.+-++..
T Consensus 44 CCwlfWli~ylaQlNPLigP~lk~~~I 70 (84)
T KOG3500|consen 44 CCWLFWLIVYLAQLNPLIGPQLKEKTI 70 (84)
T ss_pred HHHHHHHHHHHHHhCccccccccccee
Confidence 466666777888999999999877664
Done!