Query psy16337
Match_columns 104
No_of_seqs 110 out of 202
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:49:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rh5_B Preprotein translocase 26.5 73 0.0025 19.7 3.4 18 70-87 39-56 (74)
2 3mp7_B Preprotein translocase 23.9 72 0.0025 19.0 2.9 19 70-88 35-53 (61)
3 2wwb_B SEC61gamma, protein tra 21.6 61 0.0021 19.8 2.3 22 72-93 40-63 (68)
4 2ww9_B Protein transport prote 21.4 1E+02 0.0035 19.4 3.4 19 70-88 52-70 (80)
5 2kxa_A Haemagglutinin HA2 chai 18.2 60 0.0021 17.0 1.5 9 26-34 2-10 (30)
6 1vzm_A Osteocalcin; calcium-bi 11.6 1.5E+02 0.0051 16.8 2.1 21 8-28 21-41 (45)
7 2lep_A Rhomboid protease GLPG 15.1 51 0.0018 19.6 0.0 19 37-55 3-21 (69)
8 2k1e_A Water soluble analogue 8.4 2E+02 0.0068 17.7 2.0 9 96-104 40-48 (103)
9 1wyp_A Calponin 1; CH domain, 8.4 4.7E+02 0.016 17.1 4.4 45 50-95 82-131 (136)
10 3arc_E Cytochrome B559 subunit 7.8 1.9E+02 0.0064 18.4 1.6 31 22-63 25-55 (83)
No 1
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=26.51 E-value=73 Score=19.75 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy16337 70 RSAVLCVCVVGLIGWAFL 87 (104)
Q Consensus 70 r~~~~~~y~~Gi~~f~~~ 87 (104)
|.......++|++||..-
T Consensus 39 k~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 39 KVTALGISLLGIIGYIIH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445567888999998654
No 2
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=23.94 E-value=72 Score=18.99 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy16337 70 RSAVLCVCVVGLIGWAFLL 88 (104)
Q Consensus 70 r~~~~~~y~~Gi~~f~~~L 88 (104)
|.......++|+++|..-+
T Consensus 35 k~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 35 KITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455678888999987654
No 3
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=21.58 E-value=61 Score=19.79 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhh--ccCCC
Q psy16337 72 AVLCVCVVGLIGWAFLL--GPMTS 93 (104)
Q Consensus 72 ~~~~~y~~Gi~~f~~~L--~~lT~ 93 (104)
......++|++||..-| .|.++
T Consensus 40 ~~iG~~i~G~IGf~IklI~ipinn 63 (68)
T 2wwb_B 40 TAIGFAIMGFIGFFVKLIHIPINN 63 (68)
T ss_dssp SSHHHHHHHHHHHHHHHHHGGGTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999997543 25543
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=21.45 E-value=1e+02 Score=19.42 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy16337 70 RSAVLCVCVVGLIGWAFLL 88 (104)
Q Consensus 70 r~~~~~~y~~Gi~~f~~~L 88 (104)
+.......++|++||..-|
T Consensus 52 k~t~iG~~imG~IGfiIkL 70 (80)
T 2ww9_B 52 KAVGIGFIAVGIIGYAIKL 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445678889999997543
No 5
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=18.16 E-value=60 Score=16.97 Aligned_cols=9 Identities=44% Similarity=1.065 Sum_probs=6.7
Q ss_pred HHHHHHHHH
Q psy16337 26 LFGGYSAFL 34 (104)
Q Consensus 26 lFG~ya~fl 34 (104)
+||+.|.|+
T Consensus 2 lFGAIAGfi 10 (30)
T 2kxa_A 2 LFGAIAGFI 10 (30)
T ss_dssp HHHHHHHHH
T ss_pred cchhhhhhh
Confidence 678887775
No 6
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=11.57 E-value=1.5e+02 Score=16.78 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q psy16337 8 MSWRHALLISCFQFSYTSLFG 28 (104)
Q Consensus 8 ~~~~~a~~~~~fQ~~YTtlFG 28 (104)
.+...=..+.++|-+|+--||
T Consensus 21 ~~C~~~A~~~G~~~AY~ryfG 41 (45)
T 1vzm_A 21 MACDEMADAQGIVAAYQAFYG 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHcC
Confidence 344455667899999999988
No 7
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=15.09 E-value=51 Score=19.63 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=14.2
Q ss_pred HhCchHHHHHHHHhhhccC
Q psy16337 37 RTGHFVAPFLAHAFCNHMG 55 (104)
Q Consensus 37 rTg~l~a~i~~HafCN~mG 55 (104)
|-+++--|..+|+|+|+|.
T Consensus 3 ~l~~~~N~~~Aq~f~dyL~ 21 (69)
T 2lep_A 3 MITSFANPRVAQAFVDYMA 21 (69)
Confidence 3455566788999999984
No 8
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=8.45 E-value=2e+02 Score=17.68 Aligned_cols=9 Identities=33% Similarity=1.442 Sum_probs=5.8
Q ss_pred CccCcccCC
Q psy16337 96 LYSNNLWWR 104 (104)
Q Consensus 96 ~y~~~~~~~ 104 (104)
-|.+.+||.
T Consensus 40 ~~~~a~y~~ 48 (103)
T 2k1e_A 40 SYPDAIWWS 48 (103)
T ss_dssp CGGGTTTTT
T ss_pred cHHHHHHHH
Confidence 466677774
No 9
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=8.35 E-value=4.7e+02 Score=17.10 Aligned_cols=45 Identities=2% Similarity=-0.054 Sum_probs=28.1
Q ss_pred hhhccCCCChH-----HHhhcCCCchHHHHHHHHHHHHHHHHhhccCCCCc
Q psy16337 50 FCNHMGFPDFE-----EIYAFGEPRRSAVLCVCVVGLIGWAFLLGPMTSPA 95 (104)
Q Consensus 50 fCN~mG~P~~~-----~~~~~~~~~r~~~~~~y~~Gi~~f~~~L~~lT~p~ 95 (104)
.|.-+|+|+.. ++.+.+.. +.++.+++.++-.+......|.-.|+
T Consensus 82 a~~~~Gv~~~~lF~~~DL~e~kn~-~~V~~cL~aL~~~a~~~g~~p~~g~k 131 (136)
T 1wyp_A 82 AITKYGVKPHDIFEANDLFENTNH-TQVQSTLLALASMAKTKGNKVNVGVS 131 (136)
T ss_dssp HHHHHTCCGGGCCCHHHHHSCSCS-HHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred HHHHcCCCcccccCchHHhcCCCH-HHHHHHHHHHHHHHHHCCCCCcCccc
Confidence 57889999654 45555433 34557788888766666544555554
No 10
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=7.76 E-value=1.9e+02 Score=18.41 Aligned_cols=31 Identities=32% Similarity=0.600 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHhhhccCCCChHHHh
Q psy16337 22 SYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFPDFEEIY 63 (104)
Q Consensus 22 ~YTtlFG~ya~flflrTg~l~a~i~~HafCN~mG~P~~~~~~ 63 (104)
+--++| .|++||+.||= --+.+|-|+..+..
T Consensus 25 TIPslF--iaGwLFVstGL---------aYdvFGtPrpneYf 55 (83)
T 3arc_E 25 TIPALF--IAGWLFVSTGL---------AYDVFGTPRPDSYY 55 (83)
T ss_dssp HHHHHH--HHHHHHHHTSH---------HHHHHTCCCTTSSS
T ss_pred ccchHH--HhhhhhhccCc---------ceeccCCCCccccc
Confidence 344555 57899999993 24677999988643
Done!