Query psy16337
Match_columns 104
No_of_seqs 110 out of 202
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 18:49:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16337.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16337hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 17.5 73 0.0053 17.4 3.4 17 72-88 30-46 (56)
2 d2isya2 a.76.1.1 (A:65-140) Ir 17.5 22 0.0016 20.2 1.1 22 39-60 41-62 (76)
3 d1iv3a_ d.79.5.1 (A:) 2C-methy 13.1 40 0.0029 21.8 1.6 20 45-64 38-61 (150)
4 d1z8ga2 d.170.1.2 (A:50-159) H 12.6 42 0.0031 19.6 1.5 19 42-60 32-50 (110)
5 d1t0aa_ d.79.5.1 (A:) 2C-methy 12.3 44 0.0032 21.8 1.6 20 45-64 40-63 (158)
6 d1w55a2 d.79.5.1 (A:208-370) I 10.9 51 0.0038 21.5 1.6 20 45-64 41-64 (163)
7 d1jb0f_ f.23.16.1 (F:) Subunit 9.4 85 0.0062 20.3 2.2 35 50-85 42-80 (141)
8 d2axti1 f.23.37.1 (I:1-35) Pho 9.2 1.3E+02 0.0092 14.9 2.8 20 13-32 7-26 (35)
9 d1gx1a_ d.79.5.1 (A:) 2C-methy 8.2 75 0.0055 20.5 1.6 20 45-64 40-63 (157)
10 d1vola2 a.74.1.2 (A:208-316) T 7.6 41 0.003 19.7 0.0 12 49-60 10-21 (109)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=17.55 E-value=73 Score=17.43 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy16337 72 AVLCVCVVGLIGWAFLL 88 (104)
Q Consensus 72 ~~~~~y~~Gi~~f~~~L 88 (104)
.-....+.|++||...+
T Consensus 30 ~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 30 TALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34568889999997653
No 2
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.48 E-value=22 Score=20.21 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=19.1
Q ss_pred CchHHHHHHHHhhhccCCCChH
Q psy16337 39 GHFVAPFLAHAFCNHMGFPDFE 60 (104)
Q Consensus 39 g~l~a~i~~HafCN~mG~P~~~ 60 (104)
-|.+++-....+|+++|.|..+
T Consensus 41 EH~is~e~~~~L~~~l~~p~~~ 62 (76)
T d2isya2 41 EHVMSEDVERRLVKVLNNPTTS 62 (76)
T ss_dssp TTTCCHHHHHHHHHHTTSCCBC
T ss_pred hccCCHHHHHHHHHHhCCCCCC
Confidence 4788888999999999999864
No 3
>d1iv3a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Thermus thermophilus [TaxId: 274]}
Probab=13.13 E-value=40 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=16.1
Q ss_pred HHHHHhhhc----cCCCChHHHhh
Q psy16337 45 FLAHAFCNH----MGFPDFEEIYA 64 (104)
Q Consensus 45 i~~HafCN~----mG~P~~~~~~~ 64 (104)
+++||.|+. +|++|+...+.
T Consensus 38 v~~HAl~DAilGA~~~gDIG~~Fp 61 (150)
T d1iv3a_ 38 AAMHALTDALLSAYGLGDIGLLFP 61 (150)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCchhhhcc
Confidence 689999995 49999987653
No 4
>d1z8ga2 d.170.1.2 (A:50-159) Hepsin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.57 E-value=42 Score=19.62 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhccCCCChH
Q psy16337 42 VAPFLAHAFCNHMGFPDFE 60 (104)
Q Consensus 42 ~a~i~~HafCN~mG~P~~~ 60 (104)
|..-.+|..|..||++.-.
T Consensus 32 W~~~~A~VvCrqLGy~~a~ 50 (110)
T d1z8ga2 32 SNARVAGLSCEEMGFLRAL 50 (110)
T ss_dssp THHHHHHHHHHHHTCSCEE
T ss_pred CCHHHHHHHHHHcCCCchh
Confidence 5666799999999999743
No 5
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Probab=12.28 E-value=44 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=15.7
Q ss_pred HHHHHhhhcc----CCCChHHHhh
Q psy16337 45 FLAHAFCNHM----GFPDFEEIYA 64 (104)
Q Consensus 45 i~~HafCN~m----G~P~~~~~~~ 64 (104)
+++||.|+.+ |+.|+...+.
T Consensus 40 v~~HAi~DAilGA~~~gDIG~~Fp 63 (158)
T d1t0aa_ 40 VVLHAISDAILGAMALGDIGKHFP 63 (158)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHSC
T ss_pred HHHHHHHHHHhhhhhcCcchhhcc
Confidence 6899999954 8888886543
No 6
>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=10.87 E-value=51 Score=21.52 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=16.0
Q ss_pred HHHHHhhhc----cCCCChHHHhh
Q psy16337 45 FLAHAFCNH----MGFPDFEEIYA 64 (104)
Q Consensus 45 i~~HafCN~----mG~P~~~~~~~ 64 (104)
+++||.|+. .|++|+...+.
T Consensus 41 v~~HAi~DAilGA~~lgDIG~~Fp 64 (163)
T d1w55a2 41 VLAHSLTDAILGAAGLGDIGELYP 64 (163)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHSC
T ss_pred hhHHHHHHHHHHhccCCchhhhhc
Confidence 689999995 59999987543
No 7
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=9.38 E-value=85 Score=20.27 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=22.3
Q ss_pred hhhccCCCChHH--HhhcCCCc-hH-HHHHHHHHHHHHHH
Q psy16337 50 FCNHMGFPDFEE--IYAFGEPR-RS-AVLCVCVVGLIGWA 85 (104)
Q Consensus 50 fCN~mG~P~~~~--~~~~~~~~-r~-~~~~~y~~Gi~~f~ 85 (104)
.|--=|+|.+-. -.+|- .. -+ -++.+|++|.++|.
T Consensus 42 LCG~DGLPHLIvdG~~~Ha-Gef~iPg~lFLYIAGwIGWa 80 (141)
T d1jb0f_ 42 LCGEDGLPHLVVDGRLSRA-GDFLIPSVLFLYIAGWIGWV 80 (141)
T ss_dssp EECTTSSBCBCCSSCGGGT-TTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceeecCCCcccc-hhhhHHHHHHHHHhhhhhhh
Confidence 788789998853 11121 11 11 35789999999994
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.22 E-value=1.3e+02 Score=14.90 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16337 13 ALLISCFQFSYTSLFGGYSA 32 (104)
Q Consensus 13 a~~~~~fQ~~YTtlFG~ya~ 32 (104)
.+-+++.-|.--.+||.+++
T Consensus 7 ~Vy~vV~fFv~lFiFGFLSn 26 (35)
T d2axti1 7 TVYIVVTFFVLLFVFGFLSG 26 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred ehhhHHHHHHHHHHHhhccC
Confidence 33344444444556666543
No 9
>d1gx1a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Escherichia coli [TaxId: 562]}
Probab=8.21 E-value=75 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=15.8
Q ss_pred HHHHHhhhc----cCCCChHHHhh
Q psy16337 45 FLAHAFCNH----MGFPDFEEIYA 64 (104)
Q Consensus 45 i~~HafCN~----mG~P~~~~~~~ 64 (104)
+++||.|+. .|++|+...+.
T Consensus 40 v~~HAi~DAilGa~~lgDIG~~Fp 63 (157)
T d1gx1a_ 40 VALHALTDALLGAAALGDIGKLFP 63 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHSC
T ss_pred HHHHHHHHHHHHhhcCCCchhccc
Confidence 689999995 48999987543
No 10
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.64 E-value=41 Score=19.73 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.7
Q ss_pred HhhhccCCCChH
Q psy16337 49 AFCNHMGFPDFE 60 (104)
Q Consensus 49 afCN~mG~P~~~ 60 (104)
=|||.+|+|+--
T Consensus 10 Rf~s~L~L~~~i 21 (109)
T d1vola2 10 RFCSNLCLPKQV 21 (109)
T ss_dssp HHHHHHTCCHHH
T ss_pred HHHHHcCcCHHH
Confidence 489999999753
Done!