RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16337
(104 letters)
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 26.7 bits (60), Expect = 1.3
Identities = 6/18 (33%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 49 AFCNHMGFPDFEEIYAFG 66
H G EE +FG
Sbjct: 194 EIIRHFGI-KLEETMSFG 210
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 1.3
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 87 LLGPMTSPAL 96
L ++PAL
Sbjct: 31 LYADDSAPAL 40
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 26.4 bits (59), Expect = 1.7
Identities = 4/18 (22%), Positives = 6/18 (33%), Gaps = 1/18 (5%)
Query: 49 AFCNHMGFPDFEEIYAFG 66
+G +E FG
Sbjct: 207 RLQERLGV-TQKETICFG 223
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 26.3 bits (59), Expect = 2.0
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 49 AFCNHMGFPDFEEIYAFG 66
+G D +++YAFG
Sbjct: 190 MMIEKLGI-DKKDVYAFG 206
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 25.6 bits (57), Expect = 3.0
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 49 AFCNHMGFPDFEEIYAFG 66
F ++ EI A G
Sbjct: 201 LFADYYRV-KVSEIMACG 217
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 25.6 bits (57), Expect = 3.3
Identities = 3/19 (15%), Positives = 7/19 (36%), Gaps = 1/19 (5%)
Query: 48 HAFCNHMGFPDFEEIYAFG 66
+ +++EI G
Sbjct: 159 NKLKEMYSL-EYDEILVIG 176
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 25.7 bits (57), Expect = 3.5
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 4 LQSGMSWRHALLISCFQFSY--TSLFGGY 30
L S +S L+ S + LF +
Sbjct: 244 LTSALSELSGLISSAKLDKFTDGGLFTLF 272
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center
for structural genomics of I diseases, csgid,
oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Length = 223
Score = 25.4 bits (55), Expect = 4.0
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 11 RHALLISCFQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFPDFEEIYAFG 66
R L+I G Y+ + + +L F N +G D++ + A G
Sbjct: 142 RRMLVIQASG-------GIYTNDDWYTDVEYSHKYLKAMF-NFLGIEDYQIVRAQG 189
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein
structure initiative, southeast collaboratory for S
genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Length = 208
Score = 24.9 bits (54), Expect = 5.2
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 9 SWRHALLISCFQFSYT-----SLFGGYSAFLFVRTGH------FVAPFLAHAFCNHMGFP 57
+W + ++ F YT L G A G F + ++ N +G
Sbjct: 115 AWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAIL-NFIGVD 173
Query: 58 DFEEIYAFG 66
+ ++ G
Sbjct: 174 QVDGLFIEG 182
>1eys_M Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: f.26.1.1
Length = 324
Score = 24.7 bits (53), Expect = 7.2
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 81 LIGWAFLLGPMTSPALYSNNLWW 103
+IG+ L + + +W
Sbjct: 69 IIGFNMLASVHWDVFQFLKHFFW 91
>2wjn_M Reaction center protein M chain; bacteriochlorophyll,
lipidic-sponge phase, photosynthesis, R center, electron
transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7
NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M*
2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M*
1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M*
6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Length = 324
Score = 24.3 bits (52), Expect = 9.1
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 79 VGLIGWAFLLGPMTSPALYSNNLWW 103
+ +I + P + +W
Sbjct: 67 ILIILFNMAAEVHFDPLQFFRQFFW 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.333 0.143 0.508
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,703,805
Number of extensions: 87174
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 26
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.9 bits)