RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16337
         (104 letters)



>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 551

 Score = 25.3 bits (55), Expect = 1.7
 Identities = 7/50 (14%), Positives = 10/50 (20%), Gaps = 3/50 (6%)

Query: 19  FQFSYTSLFGGYSAFLFVRTGHFVAPFLAHAFCNHMGFPDFEEIYAFGEP 68
           F       F    A+              +         DF  I+  G  
Sbjct: 55  FLEDKKIDFEASLAWGLA---ELALKNSLNILAPWKTLDDFNRIFWCGRS 101


>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 323

 Score = 25.1 bits (55), Expect = 2.1
 Identities = 3/23 (13%), Positives = 7/23 (30%)

Query: 81  LIGWAFLLGPMTSPALYSNNLWW 103
           +I +         P  +    +W
Sbjct: 68  IILFNMAAEVHFDPLQFFRQFFW 90


>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
           chain {Clostridium pasteurianum [TaxId: 1501]}
          Length = 525

 Score = 24.3 bits (52), Expect = 4.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)

Query: 60  EEIYAFGEPRRSAVLCVCVVGLIG 83
            E Y    P    V   C VGLIG
Sbjct: 127 HEAYEMFHPAAIGVYATCPVGLIG 150


>d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa
           (Cellvibrio japonicus) [TaxId: 155077]}
          Length = 381

 Score = 23.9 bits (51), Expect = 5.7
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 37  RTGHFVAPFLAHAFCNHMGFPDFEEIYA 64
           +  H+  P       N+    DF+  YA
Sbjct: 333 QVPHYWVPANRPENINNGTLEDFQAFYA 360


>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 188

 Score = 23.5 bits (50), Expect = 7.2
 Identities = 5/29 (17%), Positives = 8/29 (27%)

Query: 55 GFPDFEEIYAFGEPRRSAVLCVCVVGLIG 83
           F D+E        R    + +      G
Sbjct: 11 DFADWEPALLAAAARSYLGVEIVHATPDG 39


>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
           [TaxId: 1050]}
          Length = 318

 Score = 23.1 bits (50), Expect = 7.6
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 81  LIGWAFLLGPMTSPALYSNNLWW 103
           +IG+  L         +  + +W
Sbjct: 69  IIGFNMLASVHWDVFQFLKHFFW 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.143    0.508 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 429,554
Number of extensions: 17436
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 10
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.4 bits)