BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16338
         (298 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 43/258 (16%)

Query: 32  LSMLSSFCVRG--------SLYPLTLIKTRLQLQ------KHDQLYKGLLDAGAKIYKSE 77
           LS L  F   G        ++ P+  +K  LQ+Q        ++ YKG++D   +I K +
Sbjct: 5   LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64

Query: 78  GLGGLYRGFWVSSVQIF-SGVMYIATYEGVRHVITKNNIHNNQ-----AKSLIAGAAASL 131
           G    +RG   + ++ F +  +  A  +  + +       + Q     A +L +G AA  
Sbjct: 65  GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124

Query: 132 VGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQ 191
                + P D     L       A+  K              +Q +F    N    I+K 
Sbjct: 125 TSLCFVYPLDFARTRL------AADVGK------------GAAQREFTGLGNCITKIFKS 166

Query: 192 DGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFS-HLLIQCISXXXXXXX 250
           DG +G Y+G+  S+   +   A ++  Y   +  L    PD  + H+++  +        
Sbjct: 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML----PDPKNVHIIVSWMIAQTVTAV 222

Query: 251 XXXXXNPLDTIRARLQVQ 268
                 P DT+R R+ +Q
Sbjct: 223 AGLVSYPFDTVRRRMMMQ 240



 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 35/174 (20%)

Query: 36  SSFCVRGSLYPLTLIKTRLQLQ----KHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV 91
           +S C    +YPL   +TRL          + + GL +   KI+KS+GL GLY+GF VS  
Sbjct: 125 TSLCF---VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQ 181

Query: 92  QIFSGVMYIATYEGVRHVIT-----KNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQH 146
            I   ++Y A Y GV            N+H     S +     + V   +  PFD + + 
Sbjct: 182 GI---IIYRAAYFGVYDTAKGMLPDPKNVH--IIVSWMIAQTVTAVAGLVSYPFDTVRRR 236

Query: 147 LMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRG 200
           +M+       QS +K            +   +  T++  + I K +G K F++G
Sbjct: 237 MMM-------QSGRK-----------GADIMYTGTVDCWRKIAKDEGPKAFFKG 272



 Score = 36.6 bits (83), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 45  YPLTLIKTRLQLQK----HDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSGVMYI 100
           YP   ++ R+ +Q      D +Y G +D   KI K EG    ++G W + ++   G   +
Sbjct: 228 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVL 287

Query: 101 ATYEGVRHVI 110
             Y+ ++  +
Sbjct: 288 VLYDEIKKFV 297


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 29/166 (17%)

Query: 45  YPLTLIKTRLQLQKHDQ---------LYKGLLDAGAKIYKSEGLGGLYRGFWVS-SVQIF 94
           +PL   K RLQ+Q   Q          Y+G+L     + ++EG   LY G       Q+ 
Sbjct: 20  FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMS 79

Query: 95  SGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLAT 154
              + I  Y+ V+   TK + H      L+AG+    +   +  P DV+         A 
Sbjct: 80  FASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG 139

Query: 155 ANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRG 200
             +                   ++++T+   + I +++G +G ++G
Sbjct: 140 GGR-------------------RYQSTVEAYKTIAREEGIRGLWKG 166



 Score = 32.7 bits (73), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/165 (18%), Positives = 65/165 (39%), Gaps = 28/165 (16%)

Query: 46  PLTLIKTRLQLQKH---DQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSVQ-IFSGVMYIA 101
           P  ++K R Q Q      + Y+  ++A   I + EG+ GL++G   +  +        + 
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183

Query: 102 TYEGVRHVITKNNIHNNQAKSLIAGA-AASLVGQTIIVPFDVISQHLMVLGLATANQSKK 160
           TY+ ++  + K N+  +        A  A      I  P DV+    M            
Sbjct: 184 TYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM------------ 231

Query: 161 KIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGYLASL 205
                      +++  ++ +  + A  + +++G + FY+G++ S 
Sbjct: 232 -----------NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSF 265


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,932,910
Number of Sequences: 62578
Number of extensions: 292881
Number of successful extensions: 721
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 10
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)