Query psy16338
Match_columns 298
No_of_seqs 157 out of 1764
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 18:50:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 9.1E-54 3.1E-58 370.0 16.5 254 24-298 5-278 (297)
2 2lck_A Mitochondrial uncouplin 100.0 7.4E-54 2.5E-58 371.4 15.8 251 28-298 3-266 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1.5E-35 5.3E-40 256.4 7.8 182 24-228 102-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 3.7E-35 1.3E-39 253.4 8.4 180 26-225 112-296 (297)
5 2l5r_A Antimicrobial peptide a 27.0 15 0.0005 17.4 0.1 17 278-295 3-19 (26)
6 3tgu_G UQCRQ, mitochondrial ub 18.4 72 0.0025 20.8 2.2 40 192-231 32-71 (81)
7 2acm_A Mucin-1; auto-catalytic 16.3 18 0.00061 21.9 -1.0 20 271-290 40-59 (66)
8 2bnk_A Early protein GP16.7; D 14.5 1.2E+02 0.0042 18.1 2.3 39 254-293 21-65 (67)
9 1y9i_A Low temperature require 14.2 1.7E+02 0.0057 22.2 3.6 44 210-253 111-158 (178)
10 2dae_A KIAA0733 protein; mitog 13.2 2.2E+02 0.0075 17.9 3.3 34 256-291 24-57 (75)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=9.1e-54 Score=369.99 Aligned_cols=254 Identities=20% Similarity=0.312 Sum_probs=222.3
Q ss_pred CCccchhhhHhHhhhhhcccccchhhhhhhhccccc------ccccccHHHHHHHHHHhhcccccccccccccc-chhhh
Q psy16338 24 MDKTQFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKH------DQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV-QIFSG 96 (298)
Q Consensus 24 ~~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~Q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~-~~~~~ 96 (298)
.+.+.++++|+++++++.++++|+|++|+|+|++.. ...|+++++++++++++||++|||||+.++++ .++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 345678999999999999999999999999999853 24689999999999999999999999999999 68889
Q ss_pred hHHHHHHHHHHHHHhhc-CCC----chhHHHHHHHhHHhhhhhhccccHHHHHHHHHHhcccccccccchhccccccccc
Q psy16338 97 VMYIATYEGVRHVITKN-NIH----NNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITI 171 (298)
Q Consensus 97 ~~~f~~~~~~~~~~~~~-~~~----~~~~~~~~ag~~ag~~~~~i~~P~e~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~ 171 (298)
+++|.+||.+++.+... +.. ......+++|++||+++.++++|+|+||+|+|.+....
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~----------------- 147 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG----------------- 147 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-----------------
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-----------------
Confidence 99999999999854332 221 23467899999999999999999999999999975321
Q ss_pred ccCccccccHHHHHHHHHhhhchhHhhhhhhhhhccccccchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhH
Q psy16338 172 DTSQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCISGTLGGFTT 251 (298)
Q Consensus 172 ~~~~~~y~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 251 (298)
....+|+++++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+.+.. ..+....+++|+++++++
T Consensus 148 -~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~---~~~~~~~~~~g~~ag~~a 223 (297)
T 1okc_A 148 -AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK---NVHIIVSWMIAQTVTAVA 223 (297)
T ss_dssp -TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---CSCHHHHHHHHHHHHHHH
T ss_pred -CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---CccHHHHHHHHHHHHHHH
Confidence 2345788999999999999999999999999999999999999999999999765431 234677889999999999
Q ss_pred hhhcccHHHHHHHHhccC--------CccHHHHHHHHHHhhchhhhhcccccccC
Q psy16338 252 TLITNPLDTIRARLQVQR--------TNSMLQTCKLLWIEEGFWMFSKGLSARLV 298 (298)
Q Consensus 252 ~~it~Pld~vk~r~q~~~--------~~~~~~~~~~i~~~eG~~~ly~G~~~~ll 298 (298)
+++++|+|+||+|+|.+. |.++.+|+++|+++||++|||||+.|+++
T Consensus 224 ~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~ 278 (297)
T 1okc_A 224 GLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL 278 (297)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHH
T ss_pred HHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHH
Confidence 999999999999999863 78999999999999999999999999864
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.4e-54 Score=371.42 Aligned_cols=251 Identities=21% Similarity=0.313 Sum_probs=225.5
Q ss_pred chhhhHhHhhhhhcccccchhhhhhhhccccc---------ccccccHHHHHHHHHHhhcccccccccccccc-chhhhh
Q psy16338 28 QFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKH---------DQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV-QIFSGV 97 (298)
Q Consensus 28 ~~~~~g~~a~~~~~~~~~Pld~vk~~~Q~~~~---------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~-~~~~~~ 97 (298)
.++++|+++++++.++++|||++|+|+|++.. ...|+++++++++++++||++|||||+.++++ .++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999864 24689999999999999999999999999999 688999
Q ss_pred HHHHHHHHHHHHHhhcCCCchhHHHHHHHhHHhhhhhhccccHHHHHHHHHHhcccccccccchhcccccccccccCccc
Q psy16338 98 MYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTK 177 (298)
Q Consensus 98 ~~f~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~e~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (298)
++|.+||.+++.+.+.....+....+++|++||+++.++++|+|+||+|+|.+... ....+
T Consensus 83 i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-------------------~~~~~ 143 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-------------------GGGRR 143 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-------------------CCSSS
T ss_pred HHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-------------------CCCCC
Confidence 99999999999886552346678899999999999999999999999999997542 23447
Q ss_pred cccHHHHHHHHHhhhchhHhhhhhhhhhccccccchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhHhhhccc
Q psy16338 178 FRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDFSHLLIQCISGTLGGFTTTLITNP 257 (298)
Q Consensus 178 y~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~it~P 257 (298)
|++.++++++|+++||++|||||+.+++++.++..+++|.+||.+|+.+.+... ...+....+++|++++++++++++|
T Consensus 144 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P 222 (303)
T 2lck_A 144 YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASP 222 (303)
T ss_dssp CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCH
Confidence 889999999999999999999999999999999999999999999998865432 2345677899999999999999999
Q ss_pred HHHHHHHHhccC---CccHHHHHHHHHHhhchhhhhcccccccC
Q psy16338 258 LDTIRARLQVQR---TNSMLQTCKLLWIEEGFWMFSKGLSARLV 298 (298)
Q Consensus 258 ld~vk~r~q~~~---~~~~~~~~~~i~~~eG~~~ly~G~~~~ll 298 (298)
+|+||+|+|.+. |.++.+|+++|+++||++|||||+.|+++
T Consensus 223 ~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~ 266 (303)
T 2lck_A 223 VDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFL 266 (303)
T ss_dssp HHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHH
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHH
Confidence 999999999975 89999999999999999999999999864
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-35 Score=256.39 Aligned_cols=182 Identities=18% Similarity=0.304 Sum_probs=163.3
Q ss_pred CCccchhhhHhHhhhhhcccccchhhhhhhhccccc---ccccccHHHHHHHHHHhhcccccccccccccc-chhhhhHH
Q psy16338 24 MDKTQFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKH---DQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV-QIFSGVMY 99 (298)
Q Consensus 24 ~~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~Q~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~-~~~~~~~~ 99 (298)
.+...++++|+++++++.++++|+|++|+|+|++.. ...|++.++++++|+++||++|||||+.|+++ .++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 455678999999999999999999999999999863 34789999999999999999999999999999 68899999
Q ss_pred HHHHHHHHHHHhhcC-CCchhHHHHHHHhHHhhhhhhccccHHHHHHHHHHhcccccccccchhcccccccccccCcccc
Q psy16338 100 IATYEGVRHVITKNN-IHNNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKF 178 (298)
Q Consensus 100 f~~~~~~~~~~~~~~-~~~~~~~~~~ag~~ag~~~~~i~~P~e~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 178 (298)
|.+||.+++.+.+.. .+.+....+++|++||+++.++++|+|+||+|+|.+.. .+|
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-----------------------~~y 238 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-----------------------GQY 238 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-----------------------SSC
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-----------------------ccc
Confidence 999999999876543 24556788999999999999999999999999998632 258
Q ss_pred ccHHHHHHHHHhhhchhHhhhhhhhhhccccccchHHHHHHHHHHHHhhc
Q psy16338 179 RTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNR 228 (298)
Q Consensus 179 ~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 228 (298)
+++++|+++|+++||++|||||+.+++++.++..+++|.+||.+|+.+.+
T Consensus 239 ~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999987643
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.7e-35 Score=253.42 Aligned_cols=180 Identities=22% Similarity=0.341 Sum_probs=155.6
Q ss_pred ccchhhhHhHhhhhhcccccchhhhhhhhccccc----ccccccHHHHHHHHHHhhcccccccccccccc-chhhhhHHH
Q psy16338 26 KTQFFPLSMLSSFCVRGSLYPLTLIKTRLQLQKH----DQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV-QIFSGVMYI 100 (298)
Q Consensus 26 ~~~~~~~g~~a~~~~~~~~~Pld~vk~~~Q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~-~~~~~~~~f 100 (298)
...++++|+++++++.++++|+|++|+|+|++.. ...|+++++++++++++||++|||||+.|+++ .++..+++|
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 191 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 191 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999853 34689999999999999999999999999999 578899999
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHhHHhhhhhhccccHHHHHHHHHHhcccccccccchhcccccccccccCcccccc
Q psy16338 101 ATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRT 180 (298)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~e~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 180 (298)
.+||.+++.+.+.. +.+....+++|++||+++.++++|+|+||+|+|.+.... ....+|++
T Consensus 192 ~~ye~~k~~~~~~~-~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~------------------~~~~~y~~ 252 (297)
T 1okc_A 192 GVYDTAKGMLPDPK-NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK------------------GADIMYTG 252 (297)
T ss_dssp HHHHHHHHSSCGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC------------------GGGCSCSS
T ss_pred HHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC------------------CCCCCCCC
Confidence 99999998765432 345677889999999999999999999999999875321 23347899
Q ss_pred HHHHHHHHHhhhchhHhhhhhhhhhccccccchHHHHHHHHHHHH
Q psy16338 181 TMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEK 225 (298)
Q Consensus 181 ~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 225 (298)
+++|+++|+++||++|||||+.+++++. +..+++|.+||.+|+.
T Consensus 253 ~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 253 TVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999999999999999999999995 5789999999988864
No 5
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=26.96 E-value=15 Score=17.44 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=11.3
Q ss_pred HHHHHhhchhhhhccccc
Q psy16338 278 KLLWIEEGFWMFSKGLSA 295 (298)
Q Consensus 278 ~~i~~~eG~~~ly~G~~~ 295 (298)
++|++. |+..|.+|+.+
T Consensus 3 keifka-glgslvkgiaa 19 (26)
T 2l5r_A 3 KEIFKA-GLGSLVKGIAA 19 (26)
T ss_dssp HHHHHH-HHHHHHHHHHH
T ss_pred HHHHHH-hHHHHHHHHHH
Confidence 556555 77778777654
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=18.41 E-value=72 Score=20.77 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.2
Q ss_pred hchhHhhhhhhhhhccccccchHHHHHHHHHHHHhhccCC
Q psy16338 192 DGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFP 231 (298)
Q Consensus 192 ~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 231 (298)
.|+...+|-+...++..+|...+.+.+|+..++..+....
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666666777778889999999999998887655433
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=16.33 E-value=18 Score=21.91 Aligned_cols=20 Identities=15% Similarity=0.286 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHhhchhhhh
Q psy16338 271 NSMLQTCKLLWIEEGFWMFS 290 (298)
Q Consensus 271 ~~~~~~~~~i~~~eG~~~ly 290 (298)
+++.+.+.+||+++|+-||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788888999999888775
No 8
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=14.45 E-value=1.2e+02 Score=18.13 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=28.0
Q ss_pred hcccHHHHHHHHhccC------CccHHHHHHHHHHhhchhhhhccc
Q psy16338 254 ITNPLDTIRARLQVQR------TNSMLQTCKLLWIEEGFWMFSKGL 293 (298)
Q Consensus 254 it~Pld~vk~r~q~~~------~~~~~~~~~~i~~~eG~~~ly~G~ 293 (298)
|--|+|+|..-. .+. -..+.+.-|.-|+-|.-+-+|||.
T Consensus 21 IrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp CCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 456899887654 222 345566668889999999999995
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=14.22 E-value=1.7e+02 Score=22.22 Aligned_cols=44 Identities=5% Similarity=0.031 Sum_probs=28.0
Q ss_pred ccchHHHHHHHHHHHHhhccCCC----CchhHHHHHHHHHHHHHhHhh
Q psy16338 210 PNSAFWWTFYHIYQEKLNRVFPD----DFSHLLIQCISGTLGGFTTTL 253 (298)
Q Consensus 210 ~~~~~~~~~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~ 253 (298)
.-..+.|..||..|....++.+. .-....-.+++|.+|++++.+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 35677888889888655443332 223466677888877776543
No 10
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.17 E-value=2.2e+02 Score=17.93 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=23.2
Q ss_pred ccHHHHHHHHhccCCccHHHHHHHHHHhhchhhhhc
Q psy16338 256 NPLDTIRARLQVQRTNSMLQTCKLLWIEEGFWMFSK 291 (298)
Q Consensus 256 ~Pld~vk~r~q~~~~~~~~~~~~~i~~~eG~~~ly~ 291 (298)
-|-+||...|..+. .+.-.|+. ++++|-.+.||-
T Consensus 24 vPd~VVsqc~~qN~-~Nl~aC~~-~L~qES~kYLY~ 57 (75)
T 2dae_A 24 VPEVVVSRCMLQNN-NNLDACCA-VLSQESTRYLYG 57 (75)
T ss_dssp SCHHHHHHHHTTTT-SCSHHHHH-HHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHhc-cCHHHHHH-HHHHhcccceec
Confidence 47777776665554 55555555 678888888885
Done!