RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16338
(298 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 70.4 bits (173), Expect = 2e-15
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 34 MLSSFCVRGSLYPLTLIKTRLQLQ--KHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV 91
+++ YPL ++KTRLQ + YKG+LD KIYK EG+ GLY+G + +
Sbjct: 17 AIAATVT----YPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLL 72
Query: 92 QIFSGVM-YIATYEGVRHVITKNN 114
++ Y TYE ++ ++ K
Sbjct: 73 RVAPAAAIYFGTYETLKKLLLKKL 96
Score = 63.4 bits (155), Expect = 5e-13
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 24/115 (20%)
Query: 120 AKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFR 179
SL+AG A + T+ P DV+ L K++
Sbjct: 6 LASLLAGGIAGAIAATVTYPLDVVKTRLQSSA--------------------AGGSRKYK 45
Query: 180 TTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDDF 234
++ + IYK++G +G Y+G L +L P +A ++ Y E L ++
Sbjct: 46 GILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTY----ETLKKLLLKKL 96
Score = 47.2 bits (113), Expect = 3e-07
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 235 SHLLIQCISGTLGGFTTTLITNPLDTIRARLQVQ------RTNSMLQTCKLLWIEEGFWM 288
L ++G + G +T PLD ++ RLQ + +L K ++ EEG
Sbjct: 3 LSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRG 62
Query: 289 FSKGLSARLV 298
KGL L+
Sbjct: 63 LYKGLLPNLL 72
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 65.6 bits (160), Expect = 3e-12
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 25 DKTQFFPLSMLSSFCVRGS----LYPLTLIKTRLQL---QKHDQLYKGLLDAGAKIYKSE 77
D +FF +++LS S +YPL +TRL + D+ + GL D KI K
Sbjct: 108 DFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQT 167
Query: 78 GLGGLYRGFWVSSVQIFSGVMYIATYEGV----RHVITKNNIHNNQA-KSLIAGAAASLV 132
G LY+GF VS I +Y Y G+ + ++ N+ + N K +A L
Sbjct: 168 GFLSLYQGFGVSVQGII---VYRGAYFGLYDSAKALLFGNDKNTNILYKWAVAQTVTILA 224
Query: 133 GQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQD 192
G I PFD + + +M++ +K S+ ++ T++ + I K +
Sbjct: 225 G-LISYPFDTVRRRMMMMS------GRKA-----------KSEIQYTGTLDCWKKILKNE 266
Query: 193 GFKGFYRGYLASL 205
G GF++G A++
Sbjct: 267 GLGGFFKGAWANV 279
Score = 39.4 bits (92), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 45 YPLTLIKTRLQL-----QKHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSGVMY 99
YP ++ R+ + K + Y G LD KI K+EGLGG ++G W + ++ G +
Sbjct: 229 YPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGGALV 288
Query: 100 IATYE 104
+ Y+
Sbjct: 289 LVFYD 293
Score = 39.0 bits (91), Expect = 0.002
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 190 KQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFP-----DDFSHLL-IQCIS 243
K+ G +RG A++ Y P AF + F ++ +FP DF + +S
Sbjct: 64 KEQGVLSLWRGNTANVIRYFPTQAFNFAF----KDYFKNMFPKYNQKTDFWKFFGVNILS 119
Query: 244 GTLGGFTTTLITNPLDTIRARL 265
G L G ++ LI PLD R RL
Sbjct: 120 GGLAGASSLLIVYPLDFARTRL 141
Score = 30.1 bits (68), Expect = 1.1
Identities = 51/249 (20%), Positives = 92/249 (36%), Gaps = 45/249 (18%)
Query: 63 YKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSGVMY-IATYEGVRHVITKNNIHN---- 117
Y G+++ ++ K +G+ L+RG + ++ F + A + +++ K N
Sbjct: 52 YSGIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWK 111
Query: 118 ----NQAKSLIAGAAASLVGQTIIVPFDVISQHLMVLGLATANQSKKKIVLEPLGITIDT 173
N +AGA++ L I+ P D L A+ K
Sbjct: 112 FFGVNILSGGLAGASSLL----IVYPLDFARTRL-------ASDIGKG------------ 148
Query: 174 SQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNSAFWWTFYHIYQEKLNRVFPDD 233
+F + I KQ GF Y+G+ S+ + ++ Y + L D
Sbjct: 149 GDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFG--NDK 206
Query: 234 FSHLLIQCISGTLGGFTTTLITNPLDTIRARL----------QVQRTNSMLQTCKLLWIE 283
+++L + LI+ P DT+R R+ ++Q T + L K +
Sbjct: 207 NTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGT-LDCWKKILKN 265
Query: 284 EGFWMFSKG 292
EG F KG
Sbjct: 266 EGLGGFFKG 274
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 47.6 bits (113), Expect = 3e-06
Identities = 55/267 (20%), Positives = 102/267 (38%), Gaps = 47/267 (17%)
Query: 35 LSSFCVRGSLYPLTLIKTRLQLQKHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSV-QI 93
LS V LYP+ IKT +Q +K + LY G + V +
Sbjct: 12 LSGVIVDAVLYPIDSIKTNIQAKKSFSFSD--------------IKKLYSGILPTLVGTV 57
Query: 94 FSGVMYIATYEGVRHVITKNNIHNNQAK-SLIAGAAASLVGQTIIVPFDVISQHLMVLGL 152
+ + YE + ++T+ + ++ LI+ + A + + +PF+++ Q++ V G
Sbjct: 58 PASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLPFEIVKQNMQVSG- 116
Query: 153 ATANQSKKKIVLEPLGITIDTSQTKFRTTMNIAQFIYKQDGFKGFYRGYLASLCAYVPNS 212
+ + +T I Q ++ + Y + +P
Sbjct: 117 ---------------------NISVLKTIYEITQ---REGLPSFLGKSYFVMIVREIPFD 152
Query: 213 AFWWTFYHIYQEKLNRVFPDDFSHL---LIQCISGTLGGFTTTLITNPLDTIRARLQVQR 269
+ + +EK + F FS + I G L G +T P+D I++R Q+
Sbjct: 153 CIQYFLWETLKEKAKKDF-GKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSR-QIIY 210
Query: 270 TNSMLQTCKLLWIEEGFWMFSKGLSAR 296
S ++T + EEG+ F KG R
Sbjct: 211 GKSYIETVTEI-AEEGYLTFYKGCCFR 236
>gnl|CDD|225056 COG2145, ThiM, Hydroxyethylthiazole kinase, sugar kinase family
[Coenzyme metabolism].
Length = 265
Score = 28.8 bits (65), Expect = 3.4
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 147 LMVLGLATANQSKKKIVLEPLGITIDTSQTKFRT 180
M + AN+S K +VL+P+G+ TKFRT
Sbjct: 73 AMRAAIKAANESGKPVVLDPVGV----GATKFRT 102
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type.
This model describes a glycyl-tRNA synthetase distinct
from the two alpha and two beta chains of the tetrameric
E. coli glycyl-tRNA synthetase. This enzyme is a
homodimeric class II tRNA synthetase and is recognized
by pfam model tRNA-synt_2b, which recognizes His, Ser,
Pro, and this set of glycyl-tRNA synthetases [Protein
synthesis, tRNA aminoacylation].
Length = 551
Score = 27.9 bits (62), Expect = 7.6
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 84 RGFWVSSVQIFSGVMYIATYEGVRHVITKNNIHNNQAKSLIAGAAASLVGQTIIVPFDVI 143
RGF S +I+ G+ Y G + KNNI N K I + II P +V+
Sbjct: 13 RGFVFQSFEIYGGLAGFWDY-GPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVL 71
Query: 144 --SQHL 147
S H+
Sbjct: 72 KASGHV 77
>gnl|CDD|201239 pfam00455, DeoRC, DeoR C terminal sensor domain. The sensor
domains of the DeoR are catalytically inactive versions
of the ISOCOT fold, but retain the substrate binding
site. DeorC senses diverse sugar derivatives such as
deoxyribose nucleoside (DeoR), tagatose phosphate
(LacR), galactosamine (AgaR), myo-inositol (Bacillus
IolR) and L-ascorbate (UlaR).
Length = 162
Score = 27.1 bits (61), Expect = 8.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 117 NNQAKSLIAGAAASLV--GQTIIV 138
N + K IA AAASL+ G TI +
Sbjct: 3 NAEEKRRIARAAASLIEDGDTIFL 26
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 27.7 bits (62), Expect = 8.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 58 KHDQLYKGLLDAGAKIYKSEG 78
K D+L GL +AG +++ S G
Sbjct: 294 KRDRLAAGLAEAGFEVHDSAG 314
>gnl|CDD|183349 PRK11869, PRK11869, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 280
Score = 27.4 bits (61), Expect = 8.8
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 96 GVMYIATYEGVRHVITKNN-----IHNNQAKSLIAGAAA--SLVG-QTIIVPFDVISQHL 147
G MY + H I +N +HNNQ L G A+ +L G +T P+ V +
Sbjct: 88 GDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPF 147
Query: 148 MVLGLATA 155
+ LA A
Sbjct: 148 NPIALAIA 155
>gnl|CDD|128420 smart00110, C1Q, Complement component C1q domain. Globular domain
found in many collagens and eponymously in complement
C1q. When part of full length proteins these domains
form a 'bouquet' due to the multimerization of
heterotrimers. The C1q fold is similar to that of tumour
necrosis factor.
Length = 135
Score = 26.5 bits (59), Expect = 9.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 54 LQLQKHDQLYKGLLDAGAKIYKSEGLGGLYRGFWVSSVQIFSG 96
LQL++ DQ++ L D GLY G +V S FSG
Sbjct: 98 LQLRQGDQVWLELPDEK---------NGLYAGEYVDST--FSG 129
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.418
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,827,536
Number of extensions: 1380855
Number of successful extensions: 1574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1565
Number of HSP's successfully gapped: 29
Length of query: 298
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 202
Effective length of database: 6,679,618
Effective search space: 1349282836
Effective search space used: 1349282836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)