BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1634
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OMX|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMX|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMZ|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1OMZ|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1ON6|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON6|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON8|A Chain A, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
pdb|1ON8|B Chain B, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
Length = 293
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 1 MLFLGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNFLVAHITAK-APIKVTPRK 59
M+ +GA+F++ + ++ PA + +D NC+DIAMNFLV T K + I V P
Sbjct: 174 MVLIGASFFNSKYLELFQKQ-PAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPIN 232
Query: 60 KFKCPQCKNS-ELLSSDTKHMIERSKCVSLFAEIYGEGGIKGSPLR 104
+ N + +H ++RS C++ IY G PL+
Sbjct: 233 MVNLEKETNGYSGMWHRAEHFLQRSYCINKLVNIY-----DGMPLK 273
>pdb|3EU3|A Chain A, Crystal Structure Of Bdbd From Bacillus Subtilis (Reduced)
pdb|3EU4|A Chain A, Crystal Structure Of Bdbd From Bacillus Subtilis
(Oxidised)
pdb|3GH9|A Chain A, Crystal Structure Of Edta-Treated Bdbd (Oxidised)
pdb|3GHA|A Chain A, Crystal Structure Of Etda-Treated Bdbd (Reduced)
Length = 202
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 51 APIKVTPRKKFKCPQCK--NSELLSSDTKHMIERSKCVSLFAEIYGEG-GIKGSPLRSVE 107
AP+ V +KCP CK NS++ K I++ F + G G + + L S E
Sbjct: 29 APVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEE 88
Query: 108 -FRADPVLFRD 117
++ DP F D
Sbjct: 89 VWKEDPDSFWD 99
>pdb|4HTR|A Chain A, N149w Variant Of Sirhp Bound To Sulfite
Length = 507
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 73 SSDTKHMIERSKCVSLFAEIYGEGGIKGSPLRSVEF 108
++ TK+ +ER + AE+ GIK P+R EF
Sbjct: 241 NAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEF 276
>pdb|4G39|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 73 SSDTKHMIERSKCVSLFAEIYGEGGIKGSPLRSVEF 108
++ TK+ +ER + AE+ GIK P+R EF
Sbjct: 304 NAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEF 339
>pdb|4G38|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 73 SSDTKHMIERSKCVSLFAEIYGEGGIKGSPLRSVEF 108
++ TK+ +ER + AE+ GIK P+R EF
Sbjct: 304 NAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEF 339
>pdb|1AOP|A Chain A, Sulfite Reductase Structure At 1.6 Angstrom Resolution
pdb|2AOP|A Chain A, Sulfite Reductase: Reduced With Crii Edta, Siroheme Feii,
[4fe-4s] +1, Phosphate Bound
pdb|2GEP|A Chain A, Sulfite Reductase Hemoprotein, Oxidized, Siroheme Feiii
[4fe-4s] +2, Sulfite Complex
pdb|3AOP|A Chain A, Sulfite Reductase Hemoprotein Photoreduced With Proflavine
Edta, Siroheme Feii,[4fe-4s] +1, Phosphate Bound
pdb|3GEO|A Chain A, Sulfite Reductase Hemoprotein Nitrite Complex
pdb|4AOP|A Chain A, Sulfite Reductase Hemoprotein Partially Photoreduced With
Proflavine Edta, Phosphate Partially Bound
pdb|4GEP|A Chain A, Sulfite Reductase Hemoprotein Cyanide Complex Reduced With
Crii Edta
pdb|5AOP|A Chain A, Sulfite Reductase Structure Reduced With Crii Edta,
5-Coordinate Siroheme, Siroheme Feii, [4fe-4s] +1
pdb|5GEP|A Chain A, Sulfite Reductase Hemoprotein Carbon Monoxide Complex
Reduced With Crii Edta
pdb|6GEP|A Chain A, Sulfite Reductase Hemoprotein Nitric Oxide Complex Reduced
With Proflavine Edta
pdb|7GEP|A Chain A, Sulfite Reductase Hemoprotein In Complex With A Partially
Oxidized Sulfide Species
pdb|8GEP|A Chain A, Sulfite Reductase Hemoprotein Nitrate Complex
Length = 497
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 73 SSDTKHMIERSKCVSLFAEIYGEGGIKGSPLRSVEF 108
++ TK+ +ER + AE+ GIK P+R EF
Sbjct: 231 NAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEF 266
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 36 EDIAMNF--LVAHITAKAPIKVTPRKKFKCPQCKNSELLSSDTKHMIERSKCVS 87
EDI F I + P+K +++ + + ELL D K ++ R KC S
Sbjct: 143 EDILRVFKEFTGRIYQRPPLKAAVKRRLRIRKIHELELLDKDGKDVLFRVKCQS 196
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 57 PRKKFKCPQCKNSELLSSD 75
P++KF CP KN E+L D
Sbjct: 68 PKEKFICPNKKNDEVLDKD 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,932,009
Number of Sequences: 62578
Number of extensions: 141039
Number of successful extensions: 351
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 12
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)