Query psy1634
Match_columns 132
No_of_seqs 106 out of 239
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 18:52:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09258 Glyco_transf_64: Glyc 100.0 5.9E-48 1.3E-52 310.0 6.8 110 1-115 136-247 (247)
2 KOG2264|consensus 100.0 4.2E-47 9.1E-52 333.0 7.8 122 1-129 785-907 (907)
3 KOG1022|consensus 100.0 1.2E-43 2.5E-48 309.1 9.1 112 1-117 580-691 (691)
4 PF02583 Trns_repr_metal: Meta 47.7 20 0.00044 24.3 2.6 24 23-46 19-42 (85)
5 PRK15039 transcriptional repre 46.8 26 0.00055 24.5 3.0 24 23-46 23-46 (90)
6 PF08078 PsaX: PsaX family; I 40.5 21 0.00046 21.1 1.5 10 38-47 23-32 (37)
7 PRK11352 regulator protein Frm 29.4 77 0.0017 22.0 3.2 21 23-43 23-43 (91)
8 KOG0655|consensus 29.0 43 0.00093 29.3 2.2 52 2-57 191-248 (408)
9 PF13262 DUF4054: Protein of u 25.2 1E+02 0.0022 21.3 3.3 25 24-48 22-48 (106)
10 PF13124 DUF3963: Protein of u 24.8 97 0.0021 18.5 2.6 36 1-45 1-36 (40)
11 PF08633 Rox3: Rox3 mediator c 24.7 5.2 0.00011 31.8 -3.8 40 81-127 4-43 (192)
12 KOG3303|consensus 21.7 60 0.0013 25.8 1.6 25 69-93 164-188 (192)
13 PF02448 L71: L71 family; Int 20.6 54 0.0012 22.2 1.0 11 30-40 60-70 (74)
14 PF12662 cEGF: Complement Clr- 20.3 29 0.00062 18.6 -0.3 9 30-38 14-22 (24)
No 1
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=100.00 E-value=5.9e-48 Score=309.99 Aligned_cols=110 Identities=61% Similarity=1.040 Sum_probs=88.8
Q ss_pred CcccchhhhhhhhHHhhhccCcHhHHHHhccCCChHHHHHHHHHHHHhCCCCeeecCCccccCCCCC--CCCCCCCCCcc
Q psy1634 1 MLFLGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNFLVAHITAKAPIKVTPRKKFKCPQCK--NSELLSSDTKH 78 (132)
Q Consensus 1 mVLT~aAF~Hr~Yl~~Yt~~lp~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~~~~~~~~~~~--~~~giS~~~~H 78 (132)
||||||||+|++||++|++.+|+++|++||+++||||||||||||++||+|||+|++++.+++..+. +..|||++++|
T Consensus 136 mvLt~aaf~h~~yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs~~T~~pPi~v~~~~~~~~~~~~~~~~~gls~~~~H 215 (247)
T PF09258_consen 136 MVLTGAAFYHRYYLELYTHWLPASIREYVDEHFNCEDIAMNFLVSNLTGKPPIKVTSRKKFKCSKCSGGGSSGLSSRPGH 215 (247)
T ss_dssp EE-TTEEEEETHHHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHHHHHSS-SE--SSEEE-TTSSSS------CCCSTCH
T ss_pred hhhhhhHhhcchHHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCcccccceeeccccccccccCCCCCchh
Confidence 8999999999999999999999999999999999999999999999999999999999999876643 36799999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCccceeeeeCCccc
Q psy1634 79 MIERSKCVSLFAEIYGEGGIKGSPLRSVEFRADPVLF 115 (132)
Q Consensus 79 ~~~R~~Cln~f~~~fG~~~~~~mPL~~s~~r~dp~l~ 115 (132)
+.+|++|||+|+++|| +|||++|++|+|||||
T Consensus 216 ~~~R~~Cln~f~~~fG-----~mPL~~s~~r~d~~l~ 247 (247)
T PF09258_consen 216 FKQRSKCLNRFAEIFG-----YMPLVYSQFRADPVLF 247 (247)
T ss_dssp HHHHHHHHHHHHHHTT-----S-----B-EEEEETTC
T ss_pred HHHHHHHHHHHHHHHC-----CCCceeEeEEecCCcC
Confidence 9999999999999999 9999999999999998
No 2
>KOG2264|consensus
Probab=100.00 E-value=4.2e-47 Score=332.98 Aligned_cols=122 Identities=54% Similarity=0.951 Sum_probs=117.9
Q ss_pred CcccchhhhhhhhHHhhhccCcHhHHHHhccCCChHHHHHHHHHHHHhCCCCeeecCCccccCCCCCCCCCCCCCCcchH
Q psy1634 1 MLFLGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNFLVAHITAKAPIKVTPRKKFKCPQCKNSELLSSDTKHMI 80 (132)
Q Consensus 1 mVLT~aAF~Hr~Yl~~Yt~~lp~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~~~~~~~~~~~~~~giS~~~~H~~ 80 (132)
||||||||+|+||+++||..||++||++||+.+|||||||||||||+|+||||||++||.|+||.| ..++|.+..||.
T Consensus 785 MvLTGAAF~HKyYlylYtY~mPqaIRd~Vdey~NCEDIAMNfLVSHiTRKPPiKvTSRWTfrCPgC--p~sLs~ddtHF~ 862 (907)
T KOG2264|consen 785 MVLTGAAFIHKYYLYLYTYEMPQAIRDHVDEYKNCEDIAMNFLVSHITRKPPIKVTSRWTFRCPGC--PESLSKDDTHFE 862 (907)
T ss_pred eeehhhHHHHHHHHHhhhhhchHHHHHHHHhhcCHHHHHHHHHHHHhccCCCceeeceeEEeCCCC--chhhccCCchHH
Confidence 899999999999999999999999999999999999999999999999999999999999999988 578999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCccceeeeeCCcccCCCCCC-ccccCCcC
Q psy1634 81 ERSKCVSLFAEIYGEGGIKGSPLRSVEFRADPVLFRDNFPP-KLKRYNDI 129 (132)
Q Consensus 81 ~R~~Cln~f~~~fG~~~~~~mPL~~s~~r~dp~l~k~~~~~-~~k~~~~~ 129 (132)
+|.+|||.|++.|| ||||.++|+|+|++|||+++|+ +.|||+-|
T Consensus 863 eRHkCinfF~kvyG-----Y~PLl~tQfRaDSiLFKTRlPhdkqKCFKyi 907 (907)
T KOG2264|consen 863 ERHKCINFFTKVYG-----YNPLLFTQFRADSILFKTRLPHDKQKCFKYI 907 (907)
T ss_pred HHHHHHHHHHHHhc-----cChhhhhhhhhhheeeeccCCcchhhhhccC
Confidence 99999999999999 9999999999999999999999 78888654
No 3
>KOG1022|consensus
Probab=100.00 E-value=1.2e-43 Score=309.12 Aligned_cols=112 Identities=62% Similarity=1.061 Sum_probs=110.2
Q ss_pred CcccchhhhhhhhHHhhhccCcHhHHHHhccCCChHHHHHHHHHHHHhCCCCeeecCCccccCCCCCCCCCCCCCCcchH
Q psy1634 1 MLFLGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNFLVAHITAKAPIKVTPRKKFKCPQCKNSELLSSDTKHMI 80 (132)
Q Consensus 1 mVLT~aAF~Hr~Yl~~Yt~~lp~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~~~~~~~~~~~~~~giS~~~~H~~ 80 (132)
||||||||+|++|+++||+.||+.+|++||+++|||||||||||||+||+|+|+|++++.++|+.|.+..|+|.+.+|+.
T Consensus 580 MVLtGAAFfhk~y~~lYt~~mPa~ir~~vDe~~NCEDIAMNFLiANatg~~aI~Vkp~~~~~~~~~sg~~gls~~~~H~~ 659 (691)
T KOG1022|consen 580 MVLTGAAFFHKKYLDLYTSDMPADIRVFVDEHMNCEDIAMNFLIANATGKPAIKVKPRKKFKCPECSGVAGLSNDNQHMR 659 (691)
T ss_pred EEEechhHHHHHHHHHhhhcccchHHHhhhcccCHHHHHHHHHhhhccCCCceEEeCcccccCcccccceeeccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCccceeeeeCCcccCC
Q psy1634 81 ERSKCVSLFAEIYGEGGIKGSPLRSVEFRADPVLFRD 117 (132)
Q Consensus 81 ~R~~Cln~f~~~fG~~~~~~mPL~~s~~r~dp~l~k~ 117 (132)
+|+.|||+|+++|| .|||+++++|+||++|++
T Consensus 660 kRS~CInrFv~iyG-----sMPLr~~e~~a~~~~~~~ 691 (691)
T KOG1022|consen 660 KRSKCINRFVDIYG-----SMPLRYVEFRADPVGFDD 691 (691)
T ss_pred HHHHHHHHHHHHhc-----CCceeEEEeeeccccCCC
Confidence 99999999999999 999999999999999975
No 4
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=47.70 E-value=20 Score=24.31 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.6
Q ss_pred HhHHHHhccCCChHHHHHHHHHHH
Q psy1634 23 APIRTYVDSHMNCEDIAMNFLVAH 46 (132)
Q Consensus 23 ~~ir~~VD~~~NCEDIaMNFlVa~ 46 (132)
..+...|++...|+||+..+-.+.
T Consensus 19 ~gI~~Miee~~~C~dIl~Qi~Av~ 42 (85)
T PF02583_consen 19 RGIERMIEEDRDCEDILQQIAAVR 42 (85)
T ss_dssp HHHHHHHHTTE-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888999999999998766543
No 5
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=46.83 E-value=26 Score=24.47 Aligned_cols=24 Identities=8% Similarity=0.328 Sum_probs=19.4
Q ss_pred HhHHHHhccCCChHHHHHHHHHHH
Q psy1634 23 APIRTYVDSHMNCEDIAMNFLVAH 46 (132)
Q Consensus 23 ~~ir~~VD~~~NCEDIaMNFlVa~ 46 (132)
..+...|++...|+||+..+-.+.
T Consensus 23 ~gI~~Miee~~~C~dIl~Ql~Avr 46 (90)
T PRK15039 23 VALKKMLDEPHECAAVLQQIAAIR 46 (90)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH
Confidence 567888999999999997765543
No 6
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=40.51 E-value=21 Score=21.06 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=8.1
Q ss_pred HHHHHHHHHH
Q psy1634 38 IAMNFLVAHI 47 (132)
Q Consensus 38 IaMNFlVa~~ 47 (132)
+++|||||..
T Consensus 23 LaINflVAay 32 (37)
T PF08078_consen 23 LAINFLVAAY 32 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5789999864
No 7
>PRK11352 regulator protein FrmR; Provisional
Probab=29.45 E-value=77 Score=21.98 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=17.4
Q ss_pred HhHHHHhccCCChHHHHHHHH
Q psy1634 23 APIRTYVDSHMNCEDIAMNFL 43 (132)
Q Consensus 23 ~~ir~~VD~~~NCEDIaMNFl 43 (132)
..+...|++...|.||+...-
T Consensus 23 ~gi~~Mie~~~~C~dil~Ql~ 43 (91)
T PRK11352 23 DALERSLEGDAECRAILQQIA 43 (91)
T ss_pred HHHHHHHHCCCCHHHHHHHHH
Confidence 567888999999999996543
No 8
>KOG0655|consensus
Probab=28.98 E-value=43 Score=29.27 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=39.3
Q ss_pred cccchhhhhhhhHHhhhccCcHhHHHH---hccCCChHHHH-HHHHHHHHhC--CCCeeecC
Q psy1634 2 LFLGAAFYHKYWNYMYTAHMPAPIRTY---VDSHMNCEDIA-MNFLVAHITA--KAPIKVTP 57 (132)
Q Consensus 2 VLT~aAF~Hr~Yl~~Yt~~lp~~ir~~---VD~~~NCEDIa-MNFlVa~~T~--~pPi~V~~ 57 (132)
|-+.+-|+-..|=+.| |+++.++ -|....|+||+ |--++-.+.+ ..||.+.+
T Consensus 191 IGitsLFIAAK~EEIY----pPKl~eFAyvTDgAcs~ddIltmE~iilkal~W~l~PiTii~ 248 (408)
T KOG0655|consen 191 IGITSLFIAAKLEEIY----PPKLIEFAYVTDGACSEDDILTMELIILKALKWELSPITIIS 248 (408)
T ss_pred hhHHHHHHHHHHhhcc----CccccceeeeccCccchHHHHHHHHHHHHHhcccccceehHH
Confidence 3455678888888888 8888887 57789999998 7777777664 66776433
No 9
>PF13262 DUF4054: Protein of unknown function (DUF4054)
Probab=25.22 E-value=1e+02 Score=21.31 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=19.2
Q ss_pred hHHHHhccCCCh--HHHHHHHHHHHHh
Q psy1634 24 PIRTYVDSHMNC--EDIAMNFLVAHIT 48 (132)
Q Consensus 24 ~ir~~VD~~~NC--EDIaMNFlVa~~T 48 (132)
.+..+|++..+| -|.+|++++||+.
T Consensus 22 ~A~~~~~~~~~~~~~~~a~~ll~AHll 48 (106)
T PF13262_consen 22 DAELYVNNSRWGDFRDRALMLLTAHLL 48 (106)
T ss_pred HHHHHhCcccCHHHHHHHHHHHHHHHH
Confidence 346677775555 6999999999987
No 10
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=24.82 E-value=97 Score=18.48 Aligned_cols=36 Identities=22% Similarity=0.540 Sum_probs=21.3
Q ss_pred CcccchhhhhhhhHHhhhccCcHhHHHHhccCCChHHHHHHHHHH
Q psy1634 1 MLFLGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNFLVA 45 (132)
Q Consensus 1 mVLT~aAF~Hr~Yl~~Yt~~lp~~ir~~VD~~~NCEDIaMNFlVa 45 (132)
|.-.++||+.||+.+. .++|-...-|--++.=-|||
T Consensus 1 m~~i~~~fieryfddi---------qkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 1 MLYIYTAFIERYFDDI---------QKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred CceehHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 5566789998887653 34444444565555444444
No 11
>PF08633 Rox3: Rox3 mediator complex subunit; InterPro: IPR013942 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the Med19 subunit of the Mediator complex in fungi. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.75 E-value=5.2 Score=31.75 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCccceeeeeCCcccCCCCCCccccCC
Q psy1634 81 ERSKCVSLFAEIYGEGGIKGSPLRSVEFRADPVLFRDNFPPKLKRYN 127 (132)
Q Consensus 81 ~R~~Cln~f~~~fG~~~~~~mPL~~s~~r~dp~l~k~~~~~~~k~~~ 127 (132)
+|-....+|.++|| --||-.+-.|.|| -+..+-.|||.|.
T Consensus 4 ~~P~p~~dLi~lyg-----L~~lA~sVAR~~p--~GeK~nkLRKSYk 43 (192)
T PF08633_consen 4 SRPNPSEDLISLYG-----LTPLAASVARTNP--DGEKINKLRKSYK 43 (192)
T ss_pred CCCCHhHHHHHHhC-----CHHHHHHHhhcCC--CchHHHHHHHHHH
Confidence 45567889999999 8899999999999 5666556788775
No 12
>KOG3303|consensus
Probab=21.68 E-value=60 Score=25.85 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=20.4
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHH
Q psy1634 69 SELLSSDTKHMIERSKCVSLFAEIY 93 (132)
Q Consensus 69 ~~giS~~~~H~~~R~~Cln~f~~~f 93 (132)
...+++++.|+..|++|-...++-|
T Consensus 164 ~inL~KdS~hfl~r~d~E~LI~qG~ 188 (192)
T KOG3303|consen 164 TINLKKDSQHFLKRTDCERLIAQGF 188 (192)
T ss_pred eEEeeccchhhccHhHHHHHHHccc
Confidence 4567888999999999998877654
No 13
>PF02448 L71: L71 family; InterPro: IPR003475 This family of insect proteins are each about 100 amino acids long and have 6 conserved cysteine residues. They all have a predicted signal peptide and are probably excreted. The function of the proteins is unknown [].
Probab=20.58 E-value=54 Score=22.19 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=8.9
Q ss_pred ccCCChHHHHH
Q psy1634 30 DSHMNCEDIAM 40 (132)
Q Consensus 30 D~~~NCEDIaM 40 (132)
.+..||||||-
T Consensus 60 ~~~l~C~nIA~ 70 (74)
T PF02448_consen 60 CRRLNCENIAE 70 (74)
T ss_pred cccCChHHHHH
Confidence 56799999983
No 14
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=20.26 E-value=29 Score=18.56 Aligned_cols=9 Identities=44% Similarity=0.792 Sum_probs=6.8
Q ss_pred ccCCChHHH
Q psy1634 30 DSHMNCEDI 38 (132)
Q Consensus 30 D~~~NCEDI 38 (132)
.+..+|+||
T Consensus 14 ~d~~~C~DI 22 (24)
T PF12662_consen 14 PDGRSCEDI 22 (24)
T ss_pred CCCCccccC
Confidence 355899998
Done!