Query psy1634
Match_columns 132
No_of_seqs 106 out of 239
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:53:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1omz_A Alpha-1,4-N-acetylhexos 100.0 2.6E-43 8.9E-48 289.1 7.3 109 1-116 174-285 (293)
2 1jb0_X Photosystem I subunit P 38.7 16 0.00056 20.5 1.7 10 38-47 20-29 (35)
3 2hh7_A Hypothetical protein CS 24.3 67 0.0023 22.6 3.3 22 23-44 24-45 (119)
4 4adz_A CSOR; transcription, co 23.4 69 0.0024 23.1 3.3 22 23-44 66-87 (136)
5 3aai_A Copper homeostasis oper 20.9 80 0.0028 21.0 3.0 22 23-44 28-50 (94)
6 1vek_A UBP14, ubiquitin-specif 13.3 1.6E+02 0.0055 19.0 3.0 15 34-48 56-70 (84)
7 2d99_A Muscle, general transcr 12.4 55 0.0019 22.1 0.4 36 24-66 7-43 (90)
8 2dag_A Ubiquitin carboxyl-term 12.1 1.7E+02 0.0058 18.4 2.7 20 29-48 30-50 (74)
9 2g3q_A Protein YBL047C; endocy 12.1 64 0.0022 17.8 0.6 18 29-46 25-42 (43)
10 1dv0_A DNA repair protein HHR2 11.5 63 0.0022 18.6 0.5 23 24-47 21-43 (47)
No 1
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=100.00 E-value=2.6e-43 Score=289.07 Aligned_cols=109 Identities=29% Similarity=0.577 Sum_probs=88.8
Q ss_pred CcccchhhhhhhhHHhhhccCcHhHHHHhccCCChHHHHHHHHHHHHhCCCC-eeecCC--ccccCCCCCCCCCCCCCCc
Q psy1634 1 MLFLGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNFLVAHITAKAP-IKVTPR--KKFKCPQCKNSELLSSDTK 77 (132)
Q Consensus 1 mVLT~aAF~Hr~Yl~~Yt~~lp~~ir~~VD~~~NCEDIaMNFlVa~~T~~pP-i~V~~~--~~~~~~~~~~~~giS~~~~ 77 (132)
||||||||+||+|+++|+ .+|+++|++||+++||||||||||||++||+|| ++|++. +.+. ...+...|||++++
T Consensus 174 mVLTgaAF~Hr~Yl~lyt-~~p~~ir~~VDe~~NCEDIaMNFlVA~~T~~pP~i~vk~~~~~~~~-~~~~~~~gis~~~~ 251 (293)
T 1omz_A 174 MVLIGASFFNSKYLELFQ-KQPAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLE-KETNGYSGMWHRAE 251 (293)
T ss_dssp EECTTEEEEETHHHHHHH-TSCHHHHHHHHHHTCCHHHHHHHHHHHHHSSCSEEEECCSSEEECC-------------CH
T ss_pred EEECchHHhccHHHHHHH-HhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcceeccccccccc-cccccccCCCCCcc
Confidence 899999999999999998 599999999999999999999999999999998 777753 1221 11223579999999
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCccceeeeeCCcccC
Q psy1634 78 HMIERSKCVSLFAEIYGEGGIKGSPLRSVEFRADPVLFR 116 (132)
Q Consensus 78 H~~~R~~Cln~f~~~fG~~~~~~mPL~~s~~r~dp~l~k 116 (132)
|+.+|++|||+|+++|| +|||++|++|+||.-|-
T Consensus 252 H~~~R~~Cln~f~~~fG-----~mPL~~s~~r~d~~~~~ 285 (293)
T 1omz_A 252 HFLQRSYCINKLVNIYD-----GMPLKYSNIMISQFGFP 285 (293)
T ss_dssp HHHHHHHHHHHHHHHHT-----SCCCCCBCEEEEETTBS
T ss_pred hhHHHHHHHHHHHHHHC-----CCCCeeeEEeecCCCCc
Confidence 99999999999999999 99999999999997664
No 2
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=38.74 E-value=16 Score=20.52 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=8.0
Q ss_pred HHHHHHHHHH
Q psy1634 38 IAMNFLVAHI 47 (132)
Q Consensus 38 IaMNFlVa~~ 47 (132)
+++|||||..
T Consensus 20 LaINflVAay 29 (35)
T 1jb0_X 20 LAINFLVAAY 29 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5789999864
No 3
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=24.29 E-value=67 Score=22.55 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=17.9
Q ss_pred HhHHHHhccCCChHHHHHHHHH
Q psy1634 23 APIRTYVDSHMNCEDIAMNFLV 44 (132)
Q Consensus 23 ~~ir~~VD~~~NCEDIaMNFlV 44 (132)
..+...|++..-|.||+...-.
T Consensus 24 rGI~rMIEedr~C~DIL~QlaA 45 (119)
T 2hh7_A 24 DGIVRMLESDAYCVDVMKQISA 45 (119)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 5678889999999999966543
No 4
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=23.38 E-value=69 Score=23.09 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.1
Q ss_pred HhHHHHhccCCChHHHHHHHHH
Q psy1634 23 APIRTYVDSHMNCEDIAMNFLV 44 (132)
Q Consensus 23 ~~ir~~VD~~~NCEDIaMNFlV 44 (132)
..+...|++...|.||+...-.
T Consensus 66 rGI~rMIEedr~C~DIL~QlaA 87 (136)
T 4adz_A 66 RGLQRMVDEDVYCIDILTQVSA 87 (136)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 5678889999999999976543
No 5
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=20.93 E-value=80 Score=20.97 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=17.7
Q ss_pred HhHHHHhccCC-ChHHHHHHHHH
Q psy1634 23 APIRTYVDSHM-NCEDIAMNFLV 44 (132)
Q Consensus 23 ~~ir~~VD~~~-NCEDIaMNFlV 44 (132)
..+...|++.. .|.||+...-.
T Consensus 28 ~gI~rMiEe~~~~C~dIl~QlaA 50 (94)
T 3aai_A 28 EGILRMLEDEKVYCVDVLKQLKA 50 (94)
T ss_dssp HHHHHHHTSSEECHHHHHHHHHH
T ss_pred HHHHHHHHcCcccHHHHHHHHHH
Confidence 46778899999 99999966543
No 6
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=13.35 E-value=1.6e+02 Score=18.95 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHHh
Q psy1634 34 NCEDIAMNFLVAHIT 48 (132)
Q Consensus 34 NCEDIaMNFlVa~~T 48 (132)
+..+.|||||.+|.-
T Consensus 56 ~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 56 AGVEEAMNWLLSHMD 70 (84)
T ss_dssp CCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhCCC
Confidence 478899999999853
No 7
>2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.39 E-value=55 Score=22.10 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=26.4
Q ss_pred hHHHHhccCCChHHHHHHHHHHHHhCCC-CeeecCCccccCCCC
Q psy1634 24 PIRTYVDSHMNCEDIAMNFLVAHITAKA-PIKVTPRKKFKCPQC 66 (132)
Q Consensus 24 ~ir~~VD~~~NCEDIaMNFlVa~~T~~p-Pi~V~~~~~~~~~~~ 66 (132)
.+|+.|.+ +.|..-+.+.|++ |++|...+-...+..
T Consensus 7 ~LrKqVee-------lF~~~Y~eALG~~~pv~VPY~k~l~~P~~ 43 (90)
T 2d99_A 7 GLRKMVEE-------VFDVLYSEALGRASVVPLPYERLLREPGL 43 (90)
T ss_dssp CHHHHHHH-------HHHHHHHHHHTCSSCCCCCHHHHHHCTTT
T ss_pred HHHHHHHH-------HHHHHHHHHcCCCCcccCCHHHHhcCCcc
Confidence 47777776 4688999999988 888877654444543
No 8
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.13 E-value=1.7e+02 Score=18.35 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=14.8
Q ss_pred hccCC-ChHHHHHHHHHHHHh
Q psy1634 29 VDSHM-NCEDIAMNFLVAHIT 48 (132)
Q Consensus 29 VD~~~-NCEDIaMNFlVa~~T 48 (132)
+-... |..+.|||||.++.-
T Consensus 30 L~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 30 VYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHTSCCHHHHHHHHHHHTT
T ss_pred HHHhCCCCHHHHHHHHHhCCC
Confidence 33344 479999999999864
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=12.09 E-value=64 Score=17.81 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=13.0
Q ss_pred hccCCChHHHHHHHHHHH
Q psy1634 29 VDSHMNCEDIAMNFLVAH 46 (132)
Q Consensus 29 VD~~~NCEDIaMNFlVa~ 46 (132)
.-...|-.+-|+|||.++
T Consensus 25 L~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 25 LEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHTSCHHHHHHHHHTC
T ss_pred HHHhCcCHHHHHHHHHcC
Confidence 334466788999999764
No 10
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=11.51 E-value=63 Score=18.60 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=16.1
Q ss_pred hHHHHhccCCChHHHHHHHHHHHH
Q psy1634 24 PIRTYVDSHMNCEDIAMNFLVAHI 47 (132)
Q Consensus 24 ~ir~~VD~~~NCEDIaMNFlVa~~ 47 (132)
.++.|.... +.+..|+|+|.++.
T Consensus 21 a~~Al~a~~-~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 21 VIQAYFACE-KNENLAANFLLSQN 43 (47)
T ss_dssp HHHHHTTTT-SCHHHHHHHTTSCC
T ss_pred HHHHHHHcC-CCHHHHHHHHHhCc
Confidence 455555554 77889999998653
Done!