Query psy1634
Match_columns 132
No_of_seqs 106 out of 239
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 18:53:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1634.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1634hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 99.4 6.1E-13 4.4E-17 94.4 7.2 109 2-116 150-260 (265)
2 d1y0ua_ a.4.5.5 (A:) Putative 61.1 1.8 0.00013 27.5 1.7 39 4-42 15-53 (89)
3 d1y6ia1 a.118.1.22 (A:1-82) Mg 53.5 1.3 9.6E-05 28.1 0.0 35 24-58 23-57 (82)
4 d1jb0x_ f.23.20.1 (X:) Subunit 45.0 5.2 0.00038 20.1 1.5 10 38-47 14-23 (29)
5 d1z3xa1 a.118.1.22 (A:1-87) GU 23.8 20 0.0014 22.5 2.0 35 24-58 26-62 (87)
6 d1tlha_ a.150.1.1 (A:) Anti-si 16.7 17 0.0013 22.8 0.5 10 32-41 19-28 (89)
7 d1a6qa1 a.159.1.1 (A:297-368) 14.4 32 0.0023 20.6 1.3 31 22-52 17-51 (72)
8 d1nn7a_ d.42.1.2 (A:) Potassiu 10.0 50 0.0036 20.4 1.2 18 28-45 43-60 (105)
9 d1jjcb1 a.6.1.1 (B:1-38,B:152- 8.6 55 0.004 19.3 1.0 17 23-39 6-22 (77)
10 d1wgna_ a.5.2.1 (A:) Ubiquitin 8.3 1.5E+02 0.011 16.6 2.9 22 25-47 37-58 (63)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.36 E-value=6.1e-13 Score=94.44 Aligned_cols=109 Identities=25% Similarity=0.468 Sum_probs=80.8
Q ss_pred cccchhhhhhhhHHhhhccCcHhHHHHhccCCChHHHHHHHHHHHHhCCCCeeecCCcccc-CC-CCCCCCCCCCCCcch
Q psy1634 2 LFLGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNFLVAHITAKAPIKVTPRKKFK-CP-QCKNSELLSSDTKHM 79 (132)
Q Consensus 2 VLT~aAF~Hr~Yl~~Yt~~lp~~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~~~~~~-~~-~~~~~~giS~~~~H~ 79 (132)
++++++|+|+.++..+.... .....+.++...|+|+.|.+......+.+.+.......+. .. ...+..++|.+.+|+
T Consensus 150 ~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (265)
T d1omza_ 150 VLIGASFFNSKYLELFQKQP-AAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPINMVNLEKETNGYSGMWHRAEHF 228 (265)
T ss_dssp ECTTEEEEETHHHHHHHTSC-HHHHHHHHHHTCCHHHHHHHHHHHHHSSCSEEEECCSSEEECC------------CHHH
T ss_pred eccceeEecHHHHHHHhhhH-HHHhhhhhhhcchHHHHHHHHHHHhcCCceeeeeccEEEEEeeeccccccccccCccHH
Confidence 45678899999999887554 5688899999999999999999999999876543322221 11 123456899999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCccceeeeeCCcccC
Q psy1634 80 IERSKCVSLFAEIYGEGGIKGSPLRSVEFRADPVLFR 116 (132)
Q Consensus 80 ~~R~~Cln~f~~~fG~~~~~~mPL~~s~~r~dp~l~k 116 (132)
.+|+.|||.|+++|| +|||++|++++.+-.|.
T Consensus 229 ~~r~~~i~~f~~~f~-----~mPL~~s~i~~~~f~fp 260 (265)
T d1omza_ 229 LQRSYCINKLVNIYD-----GMPLKYSNIMISQFGFP 260 (265)
T ss_dssp HHHHHHHHHHHHHHT-----SCCCCCBCEEEEETTBS
T ss_pred HHHHHHHHHHHHHHC-----cCcHHHHHHHHHHhCCc
Confidence 999999999999999 99999999998776654
No 2
>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=61.14 E-value=1.8 Score=27.46 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=31.9
Q ss_pred cchhhhhhhhHHhhhccCcHhHHHHhccCCChHHHHHHH
Q psy1634 4 LGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNF 42 (132)
Q Consensus 4 T~aAF~Hr~Yl~~Yt~~lp~~ir~~VD~~~NCEDIaMNF 42 (132)
-+++-+|+.|++.-+..+-..+..++++..|=|.|.=-|
T Consensus 15 eks~eyHkry~~av~nPvRrkiLrmi~kgrsedEIm~~l 53 (89)
T d1y0ua_ 15 EKADEYHKRYNYAVTNPVRRKILRMLDKGRSEEEIMQTL 53 (89)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHccCCHHHHHHHh
Confidence 457889999999988776688999999999987775444
No 3
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=53.49 E-value=1.3 Score=28.08 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=27.2
Q ss_pred hHHHHhccCCChHHHHHHHHHHHHhCCCCeeecCC
Q psy1634 24 PIRTYVDSHMNCEDIAMNFLVAHITAKAPIKVTPR 58 (132)
Q Consensus 24 ~ir~~VD~~~NCEDIaMNFlVa~~T~~pPi~V~~~ 58 (132)
.|-+.++-.--.-+|+|.||-++....||-+|.++
T Consensus 23 ~IpqLa~~Ge~G~~vL~eFL~~~~~~~~~t~V~Gk 57 (82)
T d1y6ia1 23 AIAALAEMGEGGQGILLDYLAKNVPLEKPVLAVGN 57 (82)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHCSCSSCCHHHHH
T ss_pred HHHHHHHccchhHHHHHHHHHHhCccCCCCcccch
Confidence 34455565566789999999999888888888774
No 4
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=45.01 E-value=5.2 Score=20.12 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=8.2
Q ss_pred HHHHHHHHHH
Q psy1634 38 IAMNFLVAHI 47 (132)
Q Consensus 38 IaMNFlVa~~ 47 (132)
+++||+||..
T Consensus 14 lainflvaay 23 (29)
T d1jb0x_ 14 LAINFLVAAY 23 (29)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5789999864
No 5
>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal domain {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.79 E-value=20 Score=22.49 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=25.1
Q ss_pred hHHHHhccCCChHHHHHHHHHHHHhCC--CCeeecCC
Q psy1634 24 PIRTYVDSHMNCEDIAMNFLVAHITAK--APIKVTPR 58 (132)
Q Consensus 24 ~ir~~VD~~~NCEDIaMNFlVa~~T~~--pPi~V~~~ 58 (132)
.|-+.++-.--.-+|+|.||..+.+.. |+-+|.++
T Consensus 26 ~IpqLa~~Ge~G~~vL~eFL~~~~~~~~~p~~~V~Gk 62 (87)
T d1z3xa1 26 AMSTLSTAGTEGYHLLQEFLKDSATFSPPPAPWIRGQ 62 (87)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHTTCSSCCCHHHHHH
T ss_pred HHHHHHHccchhHHHHHHHHHHhcccCCCCcceehhH
Confidence 345556666667899999999999864 34677664
No 6
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=16.70 E-value=17 Score=22.85 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=8.5
Q ss_pred CCChHHHHHH
Q psy1634 32 HMNCEDIAMN 41 (132)
Q Consensus 32 ~~NCEDIaMN 41 (132)
.+-||||++|
T Consensus 19 K~~~edI~~~ 28 (89)
T d1tlha_ 19 KFSREDIVEN 28 (89)
T ss_dssp HHTTHHHHHS
T ss_pred HccHHHHHHh
Confidence 3789999986
No 7
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.36 E-value=32 Score=20.64 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=20.2
Q ss_pred cHhHHHHhccCC-ChHHH--HHHHHHH-HHhCCCC
Q psy1634 22 PAPIRTYVDSHM-NCEDI--AMNFLVA-HITAKAP 52 (132)
Q Consensus 22 p~~ir~~VD~~~-NCEDI--aMNFlVa-~~T~~pP 52 (132)
-+.+.+.|++.. ++.|+ +|..|.+ ++-+.||
T Consensus 17 e~~v~eii~~~~~~~~dl~~Vm~~L~~e~Ip~LPP 51 (72)
T d1a6qa1 17 ECRVEEIIKKQGEGVPDLVHVMRTLASENIPSLPP 51 (72)
T ss_dssp HHHHHHHCC----CCCCHHHHHHHHHHTTCSSCCT
T ss_pred HHHHHHHHHHcccCCchHHHHHHHHHhcCCCCCCC
Confidence 456777888755 45577 7888877 6667777
No 8
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.98 E-value=50 Score=20.37 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=16.5
Q ss_pred HhccCCChHHHHHHHHHH
Q psy1634 28 YVDSHMNCEDIAMNFLVA 45 (132)
Q Consensus 28 ~VD~~~NCEDIaMNFlVa 45 (132)
++|+...+-+.+|||+-.
T Consensus 43 FiDRdp~~F~~IL~ylR~ 60 (105)
T d1nn7a_ 43 FFDRDPDIFRHILNFYRT 60 (105)
T ss_dssp EECSCTTTHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHhc
Confidence 699999999999999964
No 9
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=8.63 E-value=55 Score=19.27 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=14.8
Q ss_pred HhHHHHhccCCChHHHH
Q psy1634 23 APIRTYVDSHMNCEDIA 39 (132)
Q Consensus 23 ~~ir~~VD~~~NCEDIa 39 (132)
.++++|||...+.|+|+
T Consensus 6 ~WLke~v~~~~s~~eLa 22 (77)
T d1jjcb1 6 SWLKAYVPELESPEVLE 22 (77)
T ss_dssp HHHTTTSTTCCCHHHHH
T ss_pred HHHHHHcCCCCCHHHHH
Confidence 47899999999999887
No 10
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.29 E-value=1.5e+02 Score=16.62 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHhccCCChHHHHHHHHHHHH
Q psy1634 25 IRTYVDSHMNCEDIAMNFLVAHI 47 (132)
Q Consensus 25 ir~~VD~~~NCEDIaMNFlVa~~ 47 (132)
.+++.-...| .+-|+|||.+|-
T Consensus 37 ~~AL~~~~~n-~e~A~~~Lls~~ 58 (63)
T d1wgna_ 37 LRAMKKKGEN-IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHCSC-HHHHHHHHHHHS
T ss_pred HHHHHHcCCC-HHHHHHHHHhCC
Confidence 3444444445 889999999873
Done!