RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1634
         (132 letters)



>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
           (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 265

 Score = 56.2 bits (134), Expect = 4e-11
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 1   MLFLGAAFYHKYWNYMYTAHMPAPIRTYVDSHMNCEDIAMNFLVAHITAKAP-IKVTPRK 59
           M+ +GA+F++  +  ++    PA +   +D   NC+DIAMNFLV   T K   I V P  
Sbjct: 149 MVLIGASFFNSKYLELFQ-KQPAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKPIN 207

Query: 60  KFKCPQCKNS-ELLSSDTKHMIERSKCVSLFAEIYGEGGIKGSPLRSVEFRADPVLF 115
                +  N    +    +H ++RS C++    IY      G PL+          F
Sbjct: 208 MVNLEKETNGYSGMWHRAEHFLQRSYCINKLVNIYD-----GMPLKYSNIMISQFGF 259


>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon
          Thermococcus celer [TaxId: 2264]}
          Length = 57

 Score = 25.5 bits (56), Expect = 0.69
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 53 IKVTPRKKFKCPQCKNSE 70
          +K  P  K  CP+C N  
Sbjct: 8  LKTLPTTKITCPKCGNDT 25


>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 70

 Score = 25.3 bits (55), Expect = 0.89
 Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 52 PIKVTPRKKFKCPQCKNSELLSSDTKHMIERSK 84
           ++  P +++ C  C     L  +   + +  K
Sbjct: 37 ALQDVPGEEWSCSLCHVLPDLKEEDVDL-QACK 68


>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 25.2 bits (55), Expect = 1.8
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 43  LVAHITAKAPIKVTPRKKFKCPQCKNSE 70
           +VAH  +   +      + +CP+    E
Sbjct: 94  VVAHSESGIQMVPISWCEMQCPKTHTKE 121


>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 72

 Score = 24.4 bits (53), Expect = 1.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 57 PRKKFKCPQCKNSE 70
          PR   +CP+C + E
Sbjct: 20 PRSDRECPKCHSRE 33


>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 50

 Score = 23.5 bits (51), Expect = 2.6
 Identities = 5/15 (33%), Positives = 6/15 (40%)

Query: 56 TPRKKFKCPQCKNSE 70
          T    F C +CK   
Sbjct: 5  TQTDLFTCGKCKKKN 19


>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 23.2 bits (50), Expect = 4.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 56 TPRKKFKCPQCKNS 69
          T R  FKCP C ++
Sbjct: 10 TNRASFKCPVCSST 23


>d1l7la_ b.18.1.16 (A:) PA-IL, galactose-binding lectin 1
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 121

 Score = 23.9 bits (51), Expect = 5.5
 Identities = 10/34 (29%), Positives = 12/34 (35%)

Query: 22 PAPIRTYVDSHMNCEDIAMNFLVAHITAKAPIKV 55
          P   R + D  + C D     LV  I     I V
Sbjct: 44 PQGDREHPDQGLICHDAFCGALVMKIGNSGTIPV 77


>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 61

 Score = 23.0 bits (49), Expect = 6.1
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 50 KAPIKVTPRKKFKCPQCKNSEL 71
            P+   P  ++ CP+C    L
Sbjct: 37 NPPLPEIPNGEWLCPRCTCPAL 58


>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
          Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 22.7 bits (48), Expect = 8.4
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 8/36 (22%)

Query: 32 HMNCEDIAMNFLVAHITAKAPIKVTPRKKFKCPQCK 67
          H +C  I+         A+  +     + + CP C 
Sbjct: 41 HGDCVGISE--------ARGRLLERNGEDYICPNCT 68


>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 22.9 bits (49), Expect = 9.7
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 48 TAKAPIKVTPRKKFKCPQCK 67
            KAP++   +    C  C 
Sbjct: 13 PVKAPLQTKKKIMKHCFLCG 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,463
Number of extensions: 21408
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 23
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.0 bits)