BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16342
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I2B|A Chain A, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|D Chain D, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|E Chain E, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|B Chain B, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|C Chain C, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|F Chain F, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|G Chain G, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|H Chain H, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|I Chain I, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|J Chain J, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|K Chain K, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
pdb|3I2B|L Chain L, The Crystal Structure Of Human 6 Pyruvoyl
Tetrahydrobiopterin Synthase
Length = 141
Score = 168 bits (426), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/133 (61%), Positives = 105/133 (78%), Gaps = 1/133 (0%)
Query: 11 LTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNI 70
++R FSA HRL+S L+DEEN +GKCNN +GHGHNY V VT+ G I GMV+N+
Sbjct: 10 VSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPATGMVMNL 69
Query: 71 NDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKL 130
DLK YM +AIM P+DHKNLD DVPYFADVVST+ENVA++IW+NL+K++ +LY+VK+
Sbjct: 70 ADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQKVLP-VGVLYKVKV 128
Query: 131 YETDKNIVLYRGE 143
YETD NIV+Y+GE
Sbjct: 129 YETDNNIVVYKGE 141
>pdb|1GTQ|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1GTQ|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1B66|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1B66|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1B6Z|A Chain A, 6-Pyruvoyl Tetrahydropterin Synthase
pdb|1B6Z|B Chain B, 6-Pyruvoyl Tetrahydropterin Synthase
Length = 140
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
Query: 17 FSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVY 76
FSA HRLHSP L+ EEN +GKCNN +GHGHNY V VT+ G I GMV+N+ DLK Y
Sbjct: 15 FSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVMNLTDLKEY 74
Query: 77 MVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDKN 136
M +AIM P+DHKNLD DVPYFADVVST+ENVA++IW NL++++ LY+VK+YETD N
Sbjct: 75 MEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGA-LYKVKVYETDNN 133
Query: 137 IVLYRGE 143
IV+Y+GE
Sbjct: 134 IVVYKGE 140
>pdb|2G64|A Chain A, Structure Of Caenorhabditis Elegans 6-Pyruvoyl
Tetrahydropterin Synthase
Length = 140
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 5 KVPIGYLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKER 64
++PI + RV+ FSA HRLHS L+D ENK T+GKCNN +GHGHNY +V L+G +
Sbjct: 3 RMPIVTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTS 62
Query: 65 GMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPEL 124
GMV ++ LK M ++ +DH+NLDKDV +F VSTSENVAI+++ LK +M P +
Sbjct: 63 GMVYDLAKLKKEM-SLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSV 121
Query: 125 LYEVKLYETDKNIVLYRG 142
LY+V + ET KNI Y+G
Sbjct: 122 LYKVTIEETPKNIFTYKG 139
>pdb|2OBA|A Chain A, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|B Chain B, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|C Chain C, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|D Chain D, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|E Chain E, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
pdb|2OBA|F Chain F, Pseudomonas Aeruginosa 6-Pyruvoyl Tetrahydrobiopterin
Synthase
Length = 138
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 17/127 (13%)
Query: 17 FSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVY 76
F + HRL PH+ + KC HGH ++ V + ++G + G + + ++K
Sbjct: 29 FESAHRL--PHVPEGH------KCGRLHGH--SFRVAIHIEGEVDPHTGWIRDFAEIKA- 77
Query: 77 MVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDKN 136
+ I +DH L+ D+P + TSEN+ +IW LK ++ E L +V+++ET +
Sbjct: 78 IFKPIYEQLDHNYLN-DIPGLEN--PTSENLCRWIWQQLKPLLPE---LSKVRVHETCTS 131
Query: 137 IVLYRGE 143
YRG+
Sbjct: 132 GCEYRGD 138
>pdb|3QN0|A Chain A, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|B Chain B, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|C Chain C, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|D Chain D, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|E Chain E, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN0|F Chain F, Structure Of 6-Pyruvoyltetrahydropterin Synthase
pdb|3QN9|A Chain A, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli
pdb|3QN9|B Chain B, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli
Length = 141
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 17 FSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVY 76
F A HRL PH+ + KC HGH ++ V + + G + G +++ +LK
Sbjct: 32 FEAAHRL--PHVPEGH------KCGRLHGH--SFMVRLEITGEVDPHTGWIIDFAELKAA 81
Query: 77 MVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDKN 136
+DH L+ D+P + TSE +A +IW+ +K ++ LL V + ET
Sbjct: 82 F-KPTYERLDHHYLN-DIPGLEN--PTSEVLAKWIWDQVKPVVP---LLSAVMVKETCTA 134
Query: 137 IVLYRGE 143
+YRGE
Sbjct: 135 GCIYRGE 141
>pdb|3QNA|A Chain A, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|B Chain B, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|C Chain C, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|D Chain D, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|E Chain E, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|F Chain F, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
Length = 141
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 17 FSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVY 76
F A HRL PH+ + G+ HGH++ V + + G + G +++ +LK
Sbjct: 32 FEAAHRL--PHVPEGHKA---GRL-----HGHSFMVRLEITGEVDPHTGWIIDFAELKAA 81
Query: 77 MVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDKN 136
+DH L+ D+P + TSE +A +IW+ +K ++ LL V + ET
Sbjct: 82 F-KPTYERLDHHYLN-DIPGLEN--PTSEVLAKWIWDQVKPVVP---LLSAVMVKETCTA 134
Query: 137 IVLYRGE 143
+YRGE
Sbjct: 135 GCIYRGE 141
>pdb|2DJ6|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DTT|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|D Chain D, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|E Chain E, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|F Chain F, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
Length = 115
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 46 HGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSE 105
HGH + +EV ++G I G V++ +L+ +V+ I +DH+NL+ F + T+E
Sbjct: 27 HGHTFFLEVAIEGEIKN--GYVMDFLELR-KIVEEITKELDHRNLNN---IFEN--PTTE 78
Query: 106 NVAIFIWNNLKKIMKEPELLYEVKLYETDKNIV 138
N+A++I ++ + L V L+E N V
Sbjct: 79 NIALWIGERIRDKLPPYVKLKRVVLWEGKDNGV 111
>pdb|3LZE|A Chain A, Plasmodium Vivax 6-Pyruvoyltetrahydropterin Synthase
(Ptps), E37c Catalytic Residue Mutant
Length = 180
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 46 HGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSE 105
HGHNY V + L+G I + G V++ + LK V + +DH + +P ++DV++ E
Sbjct: 48 HGHNYNVSLRLRGNIQGD-GYVIDFSILK-EKVRKVCKQLDHHFI---LPMYSDVLNIQE 102
>pdb|2A0S|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydropterin Synthase
(Ptps) From Plasmodium Vivax At 2.2 A Resolution
pdb|2A0S|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydropterin Synthase
(Ptps) From Plasmodium Vivax At 2.2 A Resolution
pdb|3LX3|A Chain A, Plasmodium Vivax 6-Pyruvoyltetrahydropterin Synthase
(Ptps) In Complex With Xanthopterin
Length = 180
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 46 HGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSE 105
HGHNY V + L+G I + G V++ + LK V + +DH + +P ++DV++ E
Sbjct: 48 HGHNYNVSLRLRGNIQGD-GYVIDFSILK-EKVRKVCKQLDHHFI---LPMYSDVLNIQE 102
>pdb|3M0N|A Chain A, Plasmodium Vivax 6-Pyruvoyltetrahydropterin Synthase
(Ptps), E37a Catalytic Residue Mutant
Length = 180
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 46 HGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSE 105
HGHNY V + L+G I + G V++ + LK V + +DH + +P ++DV++ E
Sbjct: 48 HGHNYNVSLRLRGNIQGD-GYVIDFSILK-EKVRKVCKQLDHHFI---LPMYSDVLNIQE 102
>pdb|3ZF7|N Chain N, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 218
Score = 29.3 bits (64), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 63 ERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIF 110
E GM +N+ LK YM ++ P++ K K +V + +++ + +
Sbjct: 111 EEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDATEEEVKAATQDRSRY 158
>pdb|1Y13|A Chain A, Structural Analysis Of Plasmodium Falciparum 6-Pyruvoyl
Tetrahydropterin Synthase (Ptps)
pdb|1Y13|B Chain B, Structural Analysis Of Plasmodium Falciparum 6-Pyruvoyl
Tetrahydropterin Synthase (Ptps)
pdb|1Y13|C Chain C, Structural Analysis Of Plasmodium Falciparum 6-Pyruvoyl
Tetrahydropterin Synthase (Ptps)
Length = 181
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 46 HGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSE 105
HGHNY V + ++G + ++ G V++ + LK V + +DH + +P ++DV+ E
Sbjct: 49 HGHNYNVSLKVRGYV-RDDGYVIDFSILK-EKVKKVCNKLDHHFI---LPIYSDVLKF-E 102
Query: 106 NVAIFIWNNLKKIMKE 121
NV NN+K I ++
Sbjct: 103 NVK----NNIKIICED 114
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 96 YFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLY 131
Y + T+E VAI + N+K K P+LLYE K+Y
Sbjct: 24 YLGTNIQTNEEVAIKL-ENVKT--KHPQLLYESKIY 56
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate
Kinase
Length = 403
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 31 EENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNL 90
EE+KI + K + HG + V K ++KE ND K+ +V + +P D + +
Sbjct: 251 EEDKIDFAK-DLLEKHGDKIVLPVDTK--VAKEFS-----NDAKITVVPSDSIPADQEGM 302
Query: 91 D---KDVPYFADVVSTSENVAIFIWNN 114
D V FAD + + V +WN
Sbjct: 303 DIGPNTVKLFADELEGAHTV---VWNG 326
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 89 NLDKDVPYFADVVSTSENVAIFIWNN 114
N+ Y A VST ENV +F W N
Sbjct: 79 NIYSTADYAAAAVSTLENVTVFAWKN 104
>pdb|2DW0|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW0|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW1|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW1|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW2|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
pdb|2DW2|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
Length = 419
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSEN-----------VAIFIWNNLKKIMKEPE 123
V +VD MV ++ +LDK ++V+T V + IW+N KI +PE
Sbjct: 13 VLVVDKAMVTKNNGDLDKIKTRMYEIVNTVNEIYRYMYIHVALVGLEIWSNEDKITVKPE 72
Query: 124 LLYEVKLY-ETDKNIVLYR 141
Y + + E K +L R
Sbjct: 73 AGYTLNAFGEWRKTDLLTR 91
>pdb|3CXX|A Chain A, Crystal Structure Of Cytochrome P450 Cyp121 F338h From M.
Tuberculosis
Length = 396
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEP 122
+M A +P N D+D+ Y A ++ + N+ + L ++ K+P
Sbjct: 167 AFMSSADPIPAAKINWDRDIEYMAGILE-NPNITTGLMGELSRLRKDP 213
>pdb|4G1X|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cyp121 In
Complex With 4-(1h-1,2,4-Triazol-1-Yl)quinolin-6-Amine
pdb|4G2G|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cyp121 In
Complex With 4,4'-(1h-1,2,3-Triazole-1,5-Diyl)diphenol
Length = 395
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEP 122
+M A +P N D+D+ Y A ++ + N+ + L ++ K+P
Sbjct: 166 AFMSSADPIPAAKINWDRDIEYMAGILE-NPNITTGLMGELSRLRKDP 212
>pdb|3CXV|A Chain A, Crystal Structure Of The Cytochrome P450 Cyp121 A233g
Mutant From Mycobacterium Tuberculosis
Length = 396
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEP 122
+M A +P N D+D+ Y A ++ + N+ + L ++ K+P
Sbjct: 167 AFMSSADPIPAAKINWDRDIEYMAGILE-NPNITTGLMGELSRLRKDP 213
>pdb|3CXY|A Chain A, Crystal Structure Of The Cytochrome P450 Cyp121 P346l
Mutant From M. Tuberculosis
Length = 396
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEP 122
+M A +P N D+D+ Y A ++ + N+ + L ++ K+P
Sbjct: 167 AFMSSADPIPAAKINWDRDIEYMAGILE-NPNITTGLMGELSRLRKDP 213
>pdb|1N40|A Chain A, Atomic Structure Of Cyp121, A Mycobacterial P450
pdb|1N4G|A Chain A, Structure Of Cyp121, A Mycobacterial P450, In Complex With
Iodopyrazole
pdb|2IJ5|A Chain A, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|B Chain B, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|C Chain C, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|D Chain D, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|E Chain E, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ5|F Chain F, Crystal Structure Of Cytochrome P450 Cyp121, P212121 Space
Group
pdb|2IJ7|A Chain A, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|B Chain B, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|C Chain C, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|D Chain D, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|E Chain E, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|2IJ7|F Chain F, Structure Of Mycobacterium Tuberculosis Cyp121 In Complex
With The Antifungal Drug Fluconazole
pdb|3G5F|A Chain A, Crystallographic Analysis Of Cytochrome P450 Cyp121
pdb|3G5H|A Chain A, Crystallographic Analysis Of Cytochrome P450 Cyp121
pdb|4G44|A Chain A, Structure Of P450 Cyp121 In Complex With Lead Compound
Mb286, 3-((1h- 1,2,4-Triazol-1-Yl)methyl)aniline
pdb|4G45|A Chain A, Structure Of Cytochrome Cyp121 In Complex With
2-Methylquinolin-6- Amine
pdb|4G46|A Chain A, Structure Of Cytochrome P450 Cyp121 In Complex With
4-Oxo-4,5,6,7- Tetrahydrobenzofuran-3-Carboxylate
pdb|4G47|A Chain A, Structure Of Cytochrome P450 Cyp121 In Complex With
4-(1h-1,2,4- Triazol-1-Yl)phenol
pdb|4G48|A Chain A, Structure Of Cyp121 In Complex With
4-(4-Phenoxy-1h-Pyrazol-3-Yl) Benzene-1,3-Diol
Length = 396
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEP 122
+M A +P N D+D+ Y A ++ + N+ + L ++ K+P
Sbjct: 167 AFMSSADPIPAAKINWDRDIEYMAGILE-NPNITTGLMGELSRLRKDP 213
>pdb|3CXZ|A Chain A, Crystal Structure Of Cytochrome P450 Cyp121 R386l Mutant
From M. Tuberculosis
Length = 396
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEP 122
+M A +P N D+D+ Y A ++ + N+ + L ++ K+P
Sbjct: 167 AFMSSADPIPAAKINWDRDIEYMAGILE-NPNITTGLMGELSRLRKDP 213
>pdb|3CY1|A Chain A, Crystal Structure Of The Cytochrome P450 Cyp121 S279a
Mutant From M. Tuberculosis
Length = 396
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEP 122
+M A +P N D+D+ Y A ++ + N+ + L ++ K+P
Sbjct: 167 AFMSSADPIPAAKINWDRDIEYMAGILE-NPNITTGLMGELSRLRKDP 213
>pdb|3CY0|A Chain A, Crystal Structure Of Cytochrome P450 Cyp121 S237a Mutant
From Mycobacterium Tuberculosis
Length = 396
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 75 VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEP 122
+M A +P N D+D+ Y A ++ + N+ + L ++ K+P
Sbjct: 167 AFMSSADPIPAAKINWDRDIEYMAGILE-NPNITTGLMGELSRLRKDP 213
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 46 HGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSE 105
HG++ + + +R V +++LK + + I+ + H + PYF DVV E
Sbjct: 268 HGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFH-HTSFFHPYFQDVVRKGE 326
Query: 106 NVAIFIWNNLKKIMKEP 122
N + N +I+K P
Sbjct: 327 NSSF---KNFYRIIKFP 340
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 20 CHRLHSPHLTDEENKITYGKCNNFHGHGH-NYTVEVTLKGPISKERGMVLNINDLKV 75
CH P L D + + + F G+ N TV+++L +SK+ +LN + K+
Sbjct: 62 CHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKI 118
>pdb|3QBT|B Chain B, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|D Chain D, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|F Chain F, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|H Chain H, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
Length = 140
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 20 CHRLHSPHLTDEENKITYGKCNNFHGHGH-NYTVEVTLKGPISKERGMVLNINDLKV 75
CH P L D + + + F G+ N TV+++L +SK+ +LN + K+
Sbjct: 59 CHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKI 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,461,213
Number of Sequences: 62578
Number of extensions: 171468
Number of successful extensions: 576
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 37
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)