Query psy16342
Match_columns 143
No_of_seqs 121 out of 1045
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:56:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00470 PTPS 6-pyruvoyl tetrah 100.0 4.1E-47 8.9E-52 278.5 16.4 134 9-143 2-135 (135)
2 TIGR00039 6PTHBS 6-pyruvoyl te 100.0 3.4E-41 7.5E-46 243.7 16.0 122 8-143 1-122 (124)
3 PF01242 PTPS: 6-pyruvoyl tetr 100.0 4.6E-42 9.9E-47 247.1 10.7 121 10-143 1-123 (123)
4 COG0720 6-pyruvoyl-tetrahydrop 100.0 9.7E-38 2.1E-42 226.7 12.0 121 8-142 2-126 (127)
5 TIGR03112 6_pyr_pter_rel 6-pyr 100.0 2.4E-37 5.2E-42 220.6 13.2 107 13-138 3-110 (113)
6 KOG4105|consensus 100.0 2E-37 4.3E-42 218.7 9.0 140 4-143 2-141 (141)
7 TIGR03367 queuosine_QueD queuo 100.0 5.2E-35 1.1E-39 201.6 11.2 92 10-117 1-92 (92)
8 COG1539 FolB Dihydroneopterin 87.0 9.2 0.0002 27.4 9.8 92 8-131 2-99 (121)
9 COG1881 Phospholipid-binding p 66.6 12 0.00025 28.6 4.3 49 34-83 115-163 (174)
10 PF02152 FolB: Dihydroneopteri 66.1 25 0.00054 24.0 5.7 72 45-132 20-96 (113)
11 TIGR00525 folB dihydroneopteri 58.4 59 0.0013 22.5 7.3 71 45-131 22-97 (116)
12 TIGR00481 Raf kinase inhibitor 54.9 22 0.00048 25.9 4.0 45 34-81 86-131 (141)
13 cd00457 PEBP PhosphatidylEthan 54.3 25 0.00054 26.0 4.2 45 34-79 99-146 (159)
14 PRK09818 putative kinase inhib 53.2 23 0.00049 27.2 3.9 45 35-81 124-170 (183)
15 PRK10257 putative kinase inhib 50.2 27 0.00058 26.1 3.8 46 34-82 101-148 (158)
16 cd00865 PEBP_bact_arch Phospha 49.7 29 0.00064 25.2 3.9 45 34-81 95-140 (150)
17 KOG0258|consensus 49.6 22 0.00047 31.0 3.6 30 60-90 190-219 (475)
18 TIGR00526 folB_dom FolB domain 45.1 1E+02 0.0022 21.3 8.6 71 45-131 23-98 (118)
19 PF04981 NMD3: NMD3 family ; 44.1 32 0.00068 27.1 3.6 78 36-121 122-209 (236)
20 PF14162 YozD: YozD-like prote 40.8 27 0.00058 21.6 2.1 18 101-118 7-24 (57)
21 PTZ00280 Actin-related protein 39.1 35 0.00077 28.8 3.3 48 64-115 75-129 (414)
22 cd00651 TFold Tunnelling fold 35.4 1.4E+02 0.003 20.1 5.5 59 45-116 23-86 (122)
23 KOG2146|consensus 33.7 40 0.00087 28.1 2.7 39 68-117 35-74 (354)
24 cd00534 DHNA_DHNTPE Dihydroneo 31.4 1.8E+02 0.0038 20.0 7.7 71 45-131 23-98 (118)
25 PTZ00466 actin-like protein; P 30.7 51 0.0011 27.7 3.0 48 64-116 80-134 (380)
26 PRK11245 folX D-erythro-7,8-di 30.1 1.9E+02 0.0042 20.1 8.7 70 45-131 27-101 (120)
27 PTZ00004 actin-2; Provisional 30.0 85 0.0019 26.2 4.2 51 64-116 74-129 (378)
28 PF06183 DinI: DinI-like famil 29.6 1.5E+02 0.0033 18.8 4.6 36 102-141 4-39 (65)
29 cd07278 PX_RICS_like The phosp 29.6 2.1E+02 0.0046 20.4 6.0 63 46-117 24-94 (114)
30 PF02680 DUF211: Uncharacteriz 26.8 1.4E+02 0.003 20.7 4.0 24 49-79 46-69 (95)
31 PTZ00452 actin; Provisional 25.6 69 0.0015 26.9 2.9 51 64-116 73-128 (375)
32 COG5418 Predicted secreted pro 25.5 1.5E+02 0.0032 22.3 4.2 36 105-140 80-115 (164)
33 PF05137 PilN: Fimbrial assemb 24.0 1.1E+02 0.0025 18.9 3.1 23 111-133 2-24 (78)
34 TIGR02940 anfO_nitrog Fe-only 22.3 1.4E+02 0.0031 23.6 3.9 40 46-90 27-66 (214)
35 PTZ00281 actin; Provisional 22.3 81 0.0018 26.4 2.7 52 63-116 73-129 (376)
36 COG2848 Uncharacterized conser 21.7 1.5E+02 0.0034 25.8 4.2 68 69-136 2-81 (445)
37 KOG4132|consensus 20.9 1.3E+02 0.0028 24.4 3.3 32 103-134 116-168 (260)
38 PF14468 DUF4427: Protein of u 20.0 2.1E+02 0.0046 20.8 4.0 57 84-141 62-120 (132)
No 1
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=100.00 E-value=4.1e-47 Score=278.46 Aligned_cols=134 Identities=66% Similarity=1.067 Sum_probs=124.4
Q ss_pred EEEEEEEEEeeceecCCCCCCcccchhccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhccCCcc
Q psy16342 9 GYLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHK 88 (143)
Q Consensus 9 ~~i~k~~~F~aAH~l~~~~~~~~~~~~~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~~lDH~ 88 (143)
.+|+|++.|+|||+|+.++||+++|++.+|||+++++|||||+|+|+|+|+.++..||||||++||++++++|.+.|||+
T Consensus 2 ~~i~~~~~F~aaH~l~~~~~~~~~n~~~~gkC~~~~lHGH~y~v~v~v~g~~~~~~GmviDF~~lk~~l~~~i~~~lDH~ 81 (135)
T cd00470 2 ATLTRRFSFSACHRLHSPPLSDEENLEVFGKCNNPNGHGHNYKVEVTVRGEIDPVTGMVMNLTDLKKAIEEAIMKPLDHK 81 (135)
T ss_pred EEEEEEEEEecccccCCCccchhhcccCCCcCCCCCccCCCeEEEEEEEEeEcCCCCEEEEHHHHHHHHHHHHHhhcCCc
Confidence 57999999999999999999999999999999944489999999999999988778999999999999988899999999
Q ss_pred cccCcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEecCCCEEEEecC
Q psy16342 89 NLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDKNIVLYRGE 143 (143)
Q Consensus 89 ~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l~~~~~l~~V~v~Et~~~~a~y~~~ 143 (143)
+||+..|+|...+||+|+||+|||++|++.|+. ..+.+|+|||||+++|+|+++
T Consensus 82 ~Ln~~~~~~~~~~PTaEniA~~i~~~l~~~l~~-~~l~~V~v~Et~~~~a~y~~~ 135 (135)
T cd00470 82 NLDDDVPYFADVVSTTENLAVYIWDNLQKVLPV-GLLYEVKVHETDKNIVVYRGE 135 (135)
T ss_pred eeccccccccCCCCCHHHHHHHHHHHHHhhcCC-CeEEEEEEEeCCCCEEEEecC
Confidence 999556778778999999999999999999985 669999999999999999975
No 2
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=100.00 E-value=3.4e-41 Score=243.69 Aligned_cols=122 Identities=41% Similarity=0.600 Sum_probs=109.1
Q ss_pred EEEEEEEEEEeeceecCCCCCCcccchhccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhccCCc
Q psy16342 8 IGYLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDH 87 (143)
Q Consensus 8 ~~~i~k~~~F~aAH~l~~~~~~~~~~~~~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~~lDH 87 (143)
|+.|+++++|+|||++++++ |+|++ +|||||+|+|+|+|+.++..||||||++||+++++++.+.|||
T Consensus 1 ~~~i~~~~~F~aaH~l~~~~----------g~c~~--lHGH~y~v~v~v~g~~~~~~G~viDf~~lk~~~~~~~~~~lDH 68 (124)
T TIGR00039 1 MFGIHKEFSFSAAHRLPGHE----------GKCGN--LHGHSYKVDVEVSGERDPKTGMVMDFSDLKKIVKEVIDEPLDH 68 (124)
T ss_pred CEEEEEEEEEeCCCCcCCCC----------CCCCC--ccCCcEEEEEEEEEeeCCCceEEEEHHHHHHHHHHHhccCCCC
Confidence 68999999999999998864 89998 8999999999999988888999999999999999944444999
Q ss_pred ccccCcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEecCCCEEEEecC
Q psy16342 88 KNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDKNIVLYRGE 143 (143)
Q Consensus 88 ~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l~~~~~l~~V~v~Et~~~~a~y~~~ 143 (143)
++|| +.+.+ ..+||+|+||+||+++|++.++.++++++|+|||||+++|+|+++
T Consensus 69 ~~Ln-~~~~~-~~~pT~Enia~~i~~~l~~~l~~~~~~~~V~v~Et~~~~a~y~~~ 122 (124)
T TIGR00039 69 KLLN-DDVNY-LENPTSENVAVYIFDNLKEYLIPVENLVKVKEEETPAEIRIYRGP 122 (124)
T ss_pred ceec-cCCCC-CCCCCHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCCcEEEEeCC
Confidence 9999 44332 358999999999999999998777889999999999999999874
No 3
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=100.00 E-value=4.6e-42 Score=247.07 Aligned_cols=121 Identities=43% Similarity=0.670 Sum_probs=107.8
Q ss_pred EEEEEEEEeeceecCCCCCCcccchhccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhccCCccc
Q psy16342 10 YLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKN 89 (143)
Q Consensus 10 ~i~k~~~F~aAH~l~~~~~~~~~~~~~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~~lDH~~ 89 (143)
+|+|+++|+|||++++++ |+|++ ||||||+|+|+|+|+.++++|||+||++||+++++ |++.|||++
T Consensus 1 ~I~~~~~f~aaH~l~~~~----------g~c~~--lHGH~y~v~v~v~g~~~~~~g~v~DF~~lk~~~~~-i~~~lDh~~ 67 (123)
T PF01242_consen 1 YITKKFKFSAAHRLPGHD----------GKCER--LHGHSYRVEVEVEGEELDEDGMVVDFGDLKKIIKE-IDDQLDHKF 67 (123)
T ss_dssp EEEEEEEEEEEE--TTTT----------GGGGS--SEEEEEEEEEEEEEESSTTTSSSS-HHHHHHHHHH-HHHHHTTEE
T ss_pred CEEEEEEEEeEEecCCCC----------CCccc--ccCCEEEEEEEEEEeeCCCCCEEEEHHHHHHHHHH-HHHHhCccc
Confidence 689999999999999764 99999 79999999999999988889999999999999999 999999999
Q ss_pred ccCcCCCCCCCC-CCHHHHHHHHHHHHHhhc-CCCceEEEEEEEecCCCEEEEecC
Q psy16342 90 LDKDVPYFADVV-STSENVAIFIWNNLKKIM-KEPELLYEVKLYETDKNIVLYRGE 143 (143)
Q Consensus 90 Ln~d~~~f~~~~-pT~E~lA~~i~~~l~~~l-~~~~~l~~V~v~Et~~~~a~y~~~ 143 (143)
||.++|.|+..+ ||+|+||+||+++|++.+ +.++++.+|+|+|||+++|+|++|
T Consensus 68 Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l~~~~~~l~~V~v~Et~~~~a~~~~e 123 (123)
T PF01242_consen 68 LNEDDPEFDDINNPTAENLARWIFERLKEKLSPPGVRLVKVEVYETPNNWAEYEGE 123 (123)
T ss_dssp GGHHSGCGCSSTS--HHHHHHHHHHHHHHHHHHTTTTEEEEEEEEETTEEEEEEE-
T ss_pred ccCCChhhhccCCCCHHHHHHHHHHHHHHHhcccccEEEEEEEEECCCCEEEEecC
Confidence 987889887665 999999999999999999 558889999999999999999986
No 4
>COG0720 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.7e-38 Score=226.75 Aligned_cols=121 Identities=36% Similarity=0.566 Sum_probs=108.1
Q ss_pred EEEEEEEEEEeeceecCCCCCCcccchhccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhccCCc
Q psy16342 8 IGYLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDH 87 (143)
Q Consensus 8 ~~~i~k~~~F~aAH~l~~~~~~~~~~~~~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~~lDH 87 (143)
++.|+++|+|+|||+|+.++ +||++ ||||||.|+|+|+|+.++..|||+||++||++++. |++.|||
T Consensus 2 ~~~i~~~f~F~AaH~l~~~~----------~kC~~--lHGHty~veV~i~ge~~d~~Gmv~DF~~lk~~~k~-i~~~~DH 68 (127)
T COG0720 2 MRGITKRFSFDAAHRLPGHP----------GKCGR--LHGHTYKVEVEIEGEELDEHGMVVDFGELKKAVKE-ILDELDH 68 (127)
T ss_pred eEEEEEEEEEecccccCCCC----------CcccC--CcCcceEEEEEEEEeeecCCCEEEEHHHHHHHHHH-hhhccCh
Confidence 68999999999999999875 68999 89999999999999999877999999999998887 9999999
Q ss_pred ccccCcCCCCCCCCCCHHHHHHHHHHHHHhhcCC--CceEEEEEEE--ecCCCEEEEec
Q psy16342 88 KNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKE--PELLYEVKLY--ETDKNIVLYRG 142 (143)
Q Consensus 88 ~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l~~--~~~l~~V~v~--Et~~~~a~y~~ 142 (143)
++|| +.+.+...+||+|++|+||+++++..||. ......++.| |||+++|+|++
T Consensus 69 ~~Ln-~~~~~~~~~pt~E~~a~~i~~~~~~~l~~~~~~s~~~~~~~~~Et~~~~~e~~~ 126 (127)
T COG0720 69 KLLN-DIEEFDKENPTAENIAKWIFDRLKVVLPDEAETSAEELREYVAETPTSGAEYRK 126 (127)
T ss_pred Hhhc-CCccccccCchHHHHHHHHHHHHHHhcCCcccccHHhhhhheecCCCceEEEee
Confidence 9999 66666557999999999999999999984 4555555555 99999999986
No 5
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=100.00 E-value=2.4e-37 Score=220.63 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=98.1
Q ss_pred EEEEEeeceecCCCCCCcccchhccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhccCCcccccC
Q psy16342 13 RVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNLDK 92 (143)
Q Consensus 13 k~~~F~aAH~l~~~~~~~~~~~~~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~~lDH~~Ln~ 92 (143)
.++.|+|||+++. .|||++ +|||||+|+|+|+|+. .|| |||++||+++++ +++.|||++||
T Consensus 3 ~~~~f~AaH~l~~-----------~gkc~~--lHGHty~vev~v~g~~---~g~-vDf~~lk~~l~~-v~~~~DH~~LN- 63 (113)
T TIGR03112 3 FKFYLNASHSIII-----------NGVRGN--KHPHTWEITIFVIKKE---DKF-ILFNDVEKKVEK-YLKPYQNKYLN- 63 (113)
T ss_pred eeEEEeCeeeCCC-----------CCCcCC--cCCCcEEEEEEEEecC---CeE-EEHHHHHHHHHH-HHHcCCCceec-
Confidence 3689999999962 399999 7999999999999976 587 899999999999 99999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhhcCC-CceEEEEEEEecCCCEE
Q psy16342 93 DVPYFADVVSTSENVAIFIWNNLKKIMKE-PELLYEVKLYETDKNIV 138 (143)
Q Consensus 93 d~~~f~~~~pT~E~lA~~i~~~l~~~l~~-~~~l~~V~v~Et~~~~a 138 (143)
++|+|.+.+||+||||+|||++|++.|++ ++++.+|+|||||++.-
T Consensus 64 dv~~f~~~~PTaEniA~~i~~~l~~~l~~~~~~l~~V~l~Et~~~~~ 110 (113)
T TIGR03112 64 DLEPFDKINPTLENIGDYFFDEIKKLLKEKGWKLHSIEISETPTRTY 110 (113)
T ss_pred cCCccCCCCCCHHHHHHHHHHHHHHhhccCCceEEEEEEEECCCceE
Confidence 89999888999999999999999999976 78999999999998764
No 6
>KOG4105|consensus
Probab=100.00 E-value=2e-37 Score=218.67 Aligned_cols=140 Identities=56% Similarity=0.914 Sum_probs=134.3
Q ss_pred CCCcEEEEEEEEEEeeceecCCCCCCcccchhccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhc
Q psy16342 4 SKVPIGYLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMV 83 (143)
Q Consensus 4 ~~~~~~~i~k~~~F~aAH~l~~~~~~~~~~~~~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~ 83 (143)
+++|...++++..|+|||||..+.|||++|.+.||||.+++.|||||.|.|+|+|+.++..|||+|..+||+.+...|..
T Consensus 2 s~~p~a~~~Rr~sFSA~HRLhS~~LSDaENle~FGKCNN~nGHGHNY~v~vtvrGeiDp~tGMV~nla~LKk~me~vim~ 81 (141)
T KOG4105|consen 2 SRMPIATMERRDSFSAAHRLHSEKLSDAENLETFGKCNNSNGHGHNYVVKVTVRGEIDPTTGMVYNLAKLKKEMELVIMT 81 (141)
T ss_pred CcCCceeeeeehhhhHHHhhcccccCchhhhHHhhccCCCCCCCcceEEEEEEecccCCccceeEEHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred cCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEecCCCEEEEecC
Q psy16342 84 PMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDKNIVLYRGE 143 (143)
Q Consensus 84 ~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l~~~~~l~~V~v~Et~~~~a~y~~~ 143 (143)
+|||+.|..|+|+|.....|+||+|.|||+.|+..|+.+--+.+|.|.|||.+-.+|+|+
T Consensus 82 ~ldhknld~dv~yfa~tvSTtENvAvYiwdnl~~vl~~p~vLYkVki~ETpkNI~~YkG~ 141 (141)
T KOG4105|consen 82 RLDHKNLDKDVEYFATTVSTTENVAVYIWDNLKSVLSNPSVLYKVKIEETPKNIFTYKGC 141 (141)
T ss_pred ccccccccccchhhcccccccccEEeeehhhHHhhcCCCceEEEEEEEeCCCceEEecCC
Confidence 999999999999999999999999999999999999876559999999999999999985
No 7
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=100.00 E-value=5.2e-35 Score=201.61 Aligned_cols=92 Identities=42% Similarity=0.691 Sum_probs=85.7
Q ss_pred EEEEEEEEeeceecCCCCCCcccchhccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhccCCccc
Q psy16342 10 YLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKN 89 (143)
Q Consensus 10 ~i~k~~~F~aAH~l~~~~~~~~~~~~~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~~lDH~~ 89 (143)
+|+|+++|+|||++++++ |+|++ +|||||+|+|+|+|+.++..|||+||++||+++++ |++.|||++
T Consensus 1 ~i~~~~~f~aaH~l~~~~----------g~c~~--lHGH~y~v~v~~~~~~l~~~g~v~Df~~lk~~~~~-i~~~lDh~~ 67 (92)
T TIGR03367 1 EITKEFTFDAAHRLPGYP----------GKCAN--LHGHTYKVEVTVSGEVLDEAGMVMDFSDLKAIVKE-VVDRLDHAL 67 (92)
T ss_pred CEEEEEEEEeeeEcCCCC----------CCccC--cCCccEEEEEEEEEeecCCccEEEEHHHHHHHHHH-HHHhCCCcE
Confidence 489999999999999864 89999 79999999999999998889999999999999998 999999999
Q ss_pred ccCcCCCCCCCCCCHHHHHHHHHHHHHh
Q psy16342 90 LDKDVPYFADVVSTSENVAIFIWNNLKK 117 (143)
Q Consensus 90 Ln~d~~~f~~~~pT~E~lA~~i~~~l~~ 117 (143)
|| ++|.|. +||+|+||+|||++|++
T Consensus 68 Ln-e~~~~~--~pT~E~ia~~i~~~l~~ 92 (92)
T TIGR03367 68 LN-DVPGLE--NPTAENLARWIYDRLKA 92 (92)
T ss_pred ee-CCCCCC--CCCHHHHHHHHHHHHhC
Confidence 99 888875 99999999999999864
No 8
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=87.00 E-value=9.2 Score=27.40 Aligned_cols=92 Identities=20% Similarity=0.160 Sum_probs=63.3
Q ss_pred EEEEEEE-EEEeeceecCCCCCCcccchhccCCCCCCCCceeeEEEEEEEEeeC-----CCCCCeEeehHHHHHHHHhhh
Q psy16342 8 IGYLTRV-EKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPI-----SKERGMVLNINDLKVYMVDAI 81 (143)
Q Consensus 8 ~~~i~k~-~~F~aAH~l~~~~~~~~~~~~~~g~c~~~~lHGH~y~v~v~v~g~~-----~~~~g~viDF~~lk~~i~~~i 81 (143)
|.+|..+ +.|.+=|=+... ++ .=|-.+.|.+++.-+. .|+..-.+|++++-+.+++++
T Consensus 2 md~v~i~~l~~~~~iGv~~~--------------E~--~~~Q~~~Vdl~l~~d~~~A~~~Ddl~dtl~Y~~v~~~i~~~v 65 (121)
T COG1539 2 MDRVFIENLEFFAYIGVLDE--------------ER--KLGQKFVVDLTLGYDLRKAAESDDLADTLNYAEVSELIKEIV 65 (121)
T ss_pred ccEEEEcceEEEEEEcCCHH--------------Hh--ccCCeEEEEEEEeccchhhcCccchhheecHHHHHHHHHHHH
Confidence 3444444 778777755321 22 4677889999988654 244778999999999999855
Q ss_pred hccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEE
Q psy16342 82 MVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLY 131 (143)
Q Consensus 82 ~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l~~~~~l~~V~v~ 131 (143)
... + | -..|.+|..|.+.+....+ .+...+|+|.
T Consensus 66 ~~~----------~-~----~LiE~lA~~ia~~l~~~~~-~v~~~~v~v~ 99 (121)
T COG1539 66 EGK----------R-F----ALIETLAEEIADLLLARFP-RVELVEVKVT 99 (121)
T ss_pred hCC----------c-c----chHHHHHHHHHHHHHhhCC-ccEEEEEEEE
Confidence 332 1 1 3589999999999999886 3556666664
No 9
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=66.56 E-value=12 Score=28.63 Aligned_cols=49 Identities=22% Similarity=0.140 Sum_probs=29.2
Q ss_pred hhccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhc
Q psy16342 34 KITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMV 83 (143)
Q Consensus 34 ~~~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~ 83 (143)
+.|.|.|... .|||.|.+.|+---..+...---..-.++.+.++..+++
T Consensus 115 ~~Y~Gp~PP~-g~~HrY~f~vyALd~~~~~~~~g~~~~~~~~~~~~hil~ 163 (174)
T COG1881 115 RGYGGPCPPK-GHGHRYYFTVYALDVELLLLPAGASGAELGKAMEGHILA 163 (174)
T ss_pred cCcccCCCCC-CCCeEEEEEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Confidence 3467999865 899999999987543221110112345566666654443
No 10
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=66.12 E-value=25 Score=24.03 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=51.1
Q ss_pred CceeeEEEEEEEEeeC-----CCCCCeEeehHHHHHHHHhhhhccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q psy16342 45 GHGHNYTVEVTLKGPI-----SKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIM 119 (143)
Q Consensus 45 lHGH~y~v~v~v~g~~-----~~~~g~viDF~~lk~~i~~~i~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l 119 (143)
..|-...+.+++.-+. .++-+-.+|+..+-+.+.+++ + -..| -+.|.||..+.+.+....
T Consensus 20 ~~~Q~v~id~~l~~~~~~a~~~D~l~~tvdY~~l~~~i~~~~-~----------~~~f----~llE~la~~i~~~i~~~~ 84 (113)
T PF02152_consen 20 ERPQPVVIDLELEYDFSKAGSSDDLDDTVDYAELAEAIRELV-E----------NSHF----NLLETLAERIADRILKEF 84 (113)
T ss_dssp HSEEEEEEEEEEEEEHHHHHHHTTGGGSSHHHHHHHHHHHHH-H----------SSEE----SSHHHHHHHHHHHHHHHT
T ss_pred ccCCEEEEEEEEEechhHhccccccccccCHHHHHHHHHHHH-h----------cCCc----ccHHHHHHHHHHHHHHhC
Confidence 5788888999886431 233667899999998888733 2 1112 479999999999999887
Q ss_pred CCCceEEEEEEEe
Q psy16342 120 KEPELLYEVKLYE 132 (143)
Q Consensus 120 ~~~~~l~~V~v~E 132 (143)
+. +..++|+|.-
T Consensus 85 ~~-v~~v~v~v~K 96 (113)
T PF02152_consen 85 PQ-VQSVTVKVRK 96 (113)
T ss_dssp TT-ESEEEEEEEE
T ss_pred CC-ccEEEEEEEC
Confidence 73 4556666654
No 11
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=58.39 E-value=59 Score=22.46 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=47.5
Q ss_pred CceeeEEEEEEEEee-----CCCCCCeEeehHHHHHHHHhhhhccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q psy16342 45 GHGHNYTVEVTLKGP-----ISKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIM 119 (143)
Q Consensus 45 lHGH~y~v~v~v~g~-----~~~~~g~viDF~~lk~~i~~~i~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l 119 (143)
..|-.+.+.+++.-+ ..|.-.-.+|+..+.+.+.+.+ +. -+ | -+.|.+|..|.+.+....
T Consensus 22 ~~~Q~~~idv~l~~~~~~a~~~D~l~~tidY~~v~~~i~~~~-~~---------~~-~----~llE~la~~Ia~~i~~~~ 86 (116)
T TIGR00525 22 VLGQRFVVDLELSVDETKAAESDDLGDTVNYAELYSAIEEIV-AE---------KP-R----DLIETVAYRIADRLFADF 86 (116)
T ss_pred ccCCEEEEEEEEEEcChhhhccCCchhccCHHHHHHHHHHHH-hC---------CC-h----hHHHHHHHHHHHHHHHHC
Confidence 577788999988533 2222344789999999888733 11 11 2 368999999999998887
Q ss_pred CCCceEEEEEEE
Q psy16342 120 KEPELLYEVKLY 131 (143)
Q Consensus 120 ~~~~~l~~V~v~ 131 (143)
+. +.-+.|+|+
T Consensus 87 ~~-v~~v~v~i~ 97 (116)
T TIGR00525 87 PQ-VQRVKVRVS 97 (116)
T ss_pred CC-ceEEEEEEE
Confidence 73 344555554
No 12
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=54.92 E-value=22 Score=25.89 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=27.2
Q ss_pred hhccCCCCCCCCceeeEEEEEEEEeeC-CCCCCeEeehHHHHHHHHhhh
Q psy16342 34 KITYGKCNNFHGHGHNYTVEVTLKGPI-SKERGMVLNINDLKVYMVDAI 81 (143)
Q Consensus 34 ~~~~g~c~~~~lHGH~y~v~v~v~g~~-~~~~g~viDF~~lk~~i~~~i 81 (143)
..|.|+|... -| |.|.+.|+---.. ++-. -.....+|.++|+..+
T Consensus 86 ~~Y~GP~PP~-g~-HrY~f~vyALd~~~l~l~-~~~~~~~l~~ai~ghv 131 (141)
T TIGR00481 86 SGYIGPCPPK-GD-HRYLFTVYALDTEKLDLD-PGFSLADLGDAMEGHI 131 (141)
T ss_pred ccEeCCCCcC-CC-EEEEEEEEEecCCCCCCC-CCCCHHHHHHHHhhCE
Confidence 4577999875 35 9999999876533 3211 1234456666665433
No 13
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=54.25 E-value=25 Score=25.98 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=26.7
Q ss_pred hhccCCCCCCCCce-eeEEEEEEEEeeCCCCCC--eEeehHHHHHHHHh
Q psy16342 34 KITYGKCNNFHGHG-HNYTVEVTLKGPISKERG--MVLNINDLKVYMVD 79 (143)
Q Consensus 34 ~~~~g~c~~~~lHG-H~y~v~v~v~g~~~~~~g--~viDF~~lk~~i~~ 79 (143)
..|.|+|... -|| |.|.+.|.-....++... --....++.+.++.
T Consensus 99 ~~Y~GP~PP~-G~g~HrY~f~lyald~~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
T cd00457 99 TVYIGPRPPL-GHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEG 146 (159)
T ss_pred cCCcCCCCCC-CCCCeeEEEEEEEecCccccccccCCCCHHHHHHHHHh
Confidence 3567899874 566 999999987654432111 12234455555554
No 14
>PRK09818 putative kinase inhibitor; Provisional
Probab=53.23 E-value=23 Score=27.22 Aligned_cols=45 Identities=13% Similarity=-0.026 Sum_probs=26.5
Q ss_pred hccCCCCCCCCce-eeEEEEEEEEe-eCCCCCCeEeehHHHHHHHHhhh
Q psy16342 35 ITYGKCNNFHGHG-HNYTVEVTLKG-PISKERGMVLNINDLKVYMVDAI 81 (143)
Q Consensus 35 ~~~g~c~~~~lHG-H~y~v~v~v~g-~~~~~~g~viDF~~lk~~i~~~i 81 (143)
.|.|+|... -|| |.|.+.|+--. +.++ -.=...-.++...++..+
T Consensus 124 gY~GP~PP~-G~g~HrY~F~vyALd~~~l~-l~~~~~~~~l~~~~~ghv 170 (183)
T PRK09818 124 GFGGACPPK-GDKPHHYQFKVWALKTDKIP-VDSNSSGALVGYMLNANK 170 (183)
T ss_pred ceECCCCcc-CCCCEEEEEEEEEecCcccC-CCCCCCHHHHHHHHhhce
Confidence 567999864 465 99999998644 2222 111123456666665534
No 15
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=50.22 E-value=27 Score=26.15 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=28.4
Q ss_pred hhccCCCCCCCCceeeEEEEEEEEe-eCCC-CCCeEeehHHHHHHHHhhhh
Q psy16342 34 KITYGKCNNFHGHGHNYTVEVTLKG-PISK-ERGMVLNINDLKVYMVDAIM 82 (143)
Q Consensus 34 ~~~~g~c~~~~lHGH~y~v~v~v~g-~~~~-~~g~viDF~~lk~~i~~~i~ 82 (143)
..|.|+|... -|+|.|.+.|.--. +.++ ..|. .-.++.++++..++
T Consensus 101 ~gY~GP~PP~-g~~HrY~f~vyALd~~~L~l~~~~--~~~~l~~a~~ghvl 148 (158)
T PRK10257 101 AGYGGAAPPK-GETHRYIFTVHALDVERIDVDEGA--SGAMVGFNVHFHSL 148 (158)
T ss_pred ccCcCCCCcc-CCCceEEEEEEEecCcccCCCCCC--CHHHHHHHHhhceE
Confidence 3577999875 46899999999655 2232 1122 34666666665443
No 16
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=49.68 E-value=29 Score=25.23 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=28.8
Q ss_pred hhccCCCCCCCCce-eeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhh
Q psy16342 34 KITYGKCNNFHGHG-HNYTVEVTLKGPISKERGMVLNINDLKVYMVDAI 81 (143)
Q Consensus 34 ~~~~g~c~~~~lHG-H~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i 81 (143)
..|.|+|.. .|| |.|.+.|.--...++. .=-....+|.++|+..+
T Consensus 95 ~~Y~gP~Pp--~~~~HrY~f~vyAld~~l~~-~~~~~~~~l~~ai~~hv 140 (150)
T cd00865 95 AGYGGPCPP--DGGPHRYVFTVYALDVPLLL-PPGATRAELLFAMKGHV 140 (150)
T ss_pred CeecCCCCc--CCCceEEEEEEEEeCCccCC-CCCCCHHHHHHHHhhce
Confidence 457799987 355 9999999887554431 11244566666666534
No 17
>KOG0258|consensus
Probab=49.61 E-value=22 Score=31.01 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=25.3
Q ss_pred CCCCCCeEeehHHHHHHHHhhhhccCCcccc
Q psy16342 60 ISKERGMVLNINDLKVYMVDAIMVPMDHKNL 90 (143)
Q Consensus 60 ~~~~~g~viDF~~lk~~i~~~i~~~lDH~~L 90 (143)
+++++||.+|+.+|++.+.+ -.+.++=+.|
T Consensus 190 LdEe~~W~ld~~el~~~~~e-A~k~i~~r~l 219 (475)
T KOG0258|consen 190 LDEESNWSLDVAELERSVDE-ARKGINPRAL 219 (475)
T ss_pred eccccCCCCCHHHHHHHHHH-HhccCCceEE
Confidence 45679999999999999998 4588888777
No 18
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=45.14 E-value=1e+02 Score=21.30 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=47.6
Q ss_pred CceeeEEEEEEEEeeC-----CCCCCeEeehHHHHHHHHhhhhccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q psy16342 45 GHGHNYTVEVTLKGPI-----SKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIM 119 (143)
Q Consensus 45 lHGH~y~v~v~v~g~~-----~~~~g~viDF~~lk~~i~~~i~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l 119 (143)
..|-.+.+.+++.-+. .|.-.-.+|+..+-+.+.+ +.+. -+ | -+.|.+|..|.+.+....
T Consensus 23 ~~~Q~v~vdv~l~~~~~~a~~~Ddl~~ti~Y~~l~~~i~~-~~~~---------~~-~----~llE~la~~ia~~i~~~~ 87 (118)
T TIGR00526 23 LLPQKVVVDLTLGYDASKAANSDDLSDSLNYAEIASNITK-FVEE---------NP-F----KLIETLAKSVSEVVLDDY 87 (118)
T ss_pred hcCCeEEEEEEEeeCchHhhccCCHHHccCHHHHHHHHHH-HHhC---------CC-c----chHHHHHHHHHHHHHHhC
Confidence 5788899999886432 2223447889998888877 2211 11 2 478999999999998887
Q ss_pred CCCceEEEEEEE
Q psy16342 120 KEPELLYEVKLY 131 (143)
Q Consensus 120 ~~~~~l~~V~v~ 131 (143)
+. +.-++|+|.
T Consensus 88 ~~-v~~v~v~v~ 98 (118)
T TIGR00526 88 QK-VTEVELEVS 98 (118)
T ss_pred CC-ceEEEEEEE
Confidence 63 445555554
No 19
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=44.14 E-value=32 Score=27.11 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=45.1
Q ss_pred ccCCCCCCCCceeeEEEEEEEEeeCCCCCCeEeehH---HHHHHHHhhhhcc-CC---cccccCcCCCCC---CCCCCHH
Q psy16342 36 TYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNIN---DLKVYMVDAIMVP-MD---HKNLDKDVPYFA---DVVSTSE 105 (143)
Q Consensus 36 ~~g~c~~~~lHGH~y~v~v~v~g~~~~~~g~viDF~---~lk~~i~~~i~~~-lD---H~~Ln~d~~~f~---~~~pT~E 105 (143)
....|.+ ..|..|...|.|+|.... ++=. ...+.+..++.+. .. +.++. ++...+ ++-.+..
T Consensus 122 ~C~~C~r--~~~~~~eaiVQvR~~~r~-----~~~~e~~~~~~~~~~~le~l~~k~~~~~~i~-~i~e~keGlD~y~~s~ 193 (236)
T PF04981_consen 122 QCPDCSR--IAGGYYEAIVQVRQRGRK-----LTEEEKEVIHKIVFEILEQLILKGDRHAFIS-DIEEVKEGLDFYFGSK 193 (236)
T ss_pred CChhHHh--hhCCCccEEEEEEecCCC-----CCHHHHHHHHHHHHHHHHHHHhhccchhccc-ceEECCCCEEEEECCH
Confidence 3468999 589999999999997321 1111 1222222211111 11 22332 111111 2346899
Q ss_pred HHHHHHHHHHHhhcCC
Q psy16342 106 NVAIFIWNNLKKIMKE 121 (143)
Q Consensus 106 ~lA~~i~~~l~~~l~~ 121 (143)
++|+.|.+.|...+|.
T Consensus 194 ~~Arki~~~i~~~~~~ 209 (236)
T PF04981_consen 194 NAARKIVSFIHSKFGG 209 (236)
T ss_pred HHHHHHHHHHHHhcCe
Confidence 9999999999999986
No 20
>PF14162 YozD: YozD-like protein
Probab=40.77 E-value=27 Score=21.63 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy16342 101 VSTSENVAIFIWNNLKKI 118 (143)
Q Consensus 101 ~pT~E~lA~~i~~~l~~~ 118 (143)
...+|.||.+|+.+|..+
T Consensus 7 ~IDTEEIAefFy~eL~kR 24 (57)
T PF14162_consen 7 VIDTEEIAEFFYHELVKR 24 (57)
T ss_pred EecHHHHHHHHHHHHHHc
Confidence 467999999999999654
No 21
>PTZ00280 Actin-related protein 3; Provisional
Probab=39.05 E-value=35 Score=28.85 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCeEeehHHHHHHHHhhhhccC-----CcccccCcCCCCCCCCCC--HHHHHHHHHHHH
Q psy16342 64 RGMVLNINDLKVYMVDAIMVPM-----DHKNLDKDVPYFADVVST--SENVAIFIWNNL 115 (143)
Q Consensus 64 ~g~viDF~~lk~~i~~~i~~~l-----DH~~Ln~d~~~f~~~~pT--~E~lA~~i~~~l 115 (143)
+|+|.|+..++.+++..+.+.| ||.+|. ..|.+ +|. -|.+++.+|+.+
T Consensus 75 ~G~I~dwd~~e~l~~~~~~~~L~~~p~~~~vll-te~~~---~~~~~Re~l~e~lFE~~ 129 (414)
T PTZ00280 75 HGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFIL-TEPPM---NPPENREYTAEIMFETF 129 (414)
T ss_pred CCEeCCHHHHHHHHHHHHHHhhccCCCCCceEE-eeCCC---CcHHHHHHHHHHHhhcc
Confidence 7999999999998875333444 677664 22333 333 477888888765
No 22
>cd00651 TFold Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin synthetase (PTPS), and uricase (UO,uroate/urate oxidase). They bind to substrates belonging to the purine or pterin families, and share a fold-related binding site with a glutamate or glutamine residue anchoring the substrate and a lot of conserved interactions. They also share a similar oligomerization mode: several T-folds join together to form a beta(2n)alpha(n) barrel, then two barrels join together in a head-to-head fashion to made up the native enzymes. The functional enzyme is a tetramer for UO, a hexamer for PTPS, an octamer for DHNA/DHNTPE and a decamer for GTPCH-1. The substrate is located in a deep and narrow pocket at the interface between monomers. In PTPS, the active site is located at the interface of thr
Probab=35.42 E-value=1.4e+02 Score=20.07 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=31.0
Q ss_pred CceeeEEEEEEEE--eeCC---CCCCeEeehHHHHHHHHhhhhccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHH
Q psy16342 45 GHGHNYTVEVTLK--GPIS---KERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLK 116 (143)
Q Consensus 45 lHGH~y~v~v~v~--g~~~---~~~g~viDF~~lk~~i~~~i~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~ 116 (143)
..|+-+.+.|.+. +... +.-.-.+|+..+-+.++..+... .++ .+++|++|..|+....
T Consensus 23 ~~~q~~~v~v~~~~~~~~~~~~d~l~~~i~y~~v~~~i~~~~~~~---~l~----------E~lae~i~~~i~~~~~ 86 (122)
T cd00651 23 TVGQIFEVDVTLSWDGKKAAASDDVATDTVYNTIYRLAKEYVEGS---QLI----------ERLAEEIAYLIAEHFL 86 (122)
T ss_pred hcCCEEEEEEEEEecCchhhccCchhhhCCHHHHHHHHHHHHccc---CCH----------HHHHHHHHHHHHHhcc
Confidence 3555555555554 3321 11223677888888777633222 111 3556666666665543
No 23
>KOG2146|consensus
Probab=33.74 E-value=40 Score=28.10 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=22.4
Q ss_pred eehHHHH-HHHHhhhhccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHh
Q psy16342 68 LNINDLK-VYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKK 117 (143)
Q Consensus 68 iDF~~lk-~~i~~~i~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~ 117 (143)
||.+.++ ++|++||...+ | |+-.|+ -+.+.+|||.+|.+
T Consensus 35 VDmsKvnleVlkPWItkrv-----n-eilgfE-----DdVViefvynqLee 74 (354)
T KOG2146|consen 35 VDMSKVNLEVLKPWITKRV-----N-EILGFE-----DDVVIEFVYNQLEE 74 (354)
T ss_pred cchhhcchhhhhHHHHHHH-----H-Hhhccc-----cchhHHHHHHHHhh
Confidence 3444444 44556554442 3 444554 45677788888876
No 24
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=31.39 E-value=1.8e+02 Score=20.02 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=45.5
Q ss_pred CceeeEEEEEEEEeeCC-----CCCCeEeehHHHHHHHHhhhhccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q psy16342 45 GHGHNYTVEVTLKGPIS-----KERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIM 119 (143)
Q Consensus 45 lHGH~y~v~v~v~g~~~-----~~~g~viDF~~lk~~i~~~i~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l 119 (143)
.-|-.+.+.+.+.-+.. |.-.-.+|+..+-+.+.+.+ .. -. | -+.|.||..|.+.+....
T Consensus 23 ~~~Q~~~idv~~~~~~~~a~~~D~l~~tidY~~l~~~i~~~~-~~---------~~-~----~llE~La~~ia~~i~~~~ 87 (118)
T cd00534 23 LLGQKFVVDLTLWYDLSKAGESDDLADTLNYAEVAKLIKKIV-EG---------SP-F----KLIETLAEEIADILLEDY 87 (118)
T ss_pred hcCCeEEEEEEEEeCchhhhccCChhhccCHHHHHHHHHHHH-hC---------CC-H----hHHHHHHHHHHHHHHHhC
Confidence 45667888888865422 22345788999888887622 11 11 2 368999999999888775
Q ss_pred CCCceEEEEEEE
Q psy16342 120 KEPELLYEVKLY 131 (143)
Q Consensus 120 ~~~~~l~~V~v~ 131 (143)
+. +.-++|+|.
T Consensus 88 ~~-v~~v~v~v~ 98 (118)
T cd00534 88 PK-VSAIKVKVE 98 (118)
T ss_pred CC-ceEEEEEEE
Confidence 53 444555553
No 25
>PTZ00466 actin-like protein; Provisional
Probab=30.74 E-value=51 Score=27.72 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCeEeehHHHHHHHHhhhhccC-----CcccccCcCCCCCCCCC--CHHHHHHHHHHHHH
Q psy16342 64 RGMVLNINDLKVYMVDAIMVPM-----DHKNLDKDVPYFADVVS--TSENVAIFIWNNLK 116 (143)
Q Consensus 64 ~g~viDF~~lk~~i~~~i~~~l-----DH~~Ln~d~~~f~~~~p--T~E~lA~~i~~~l~ 116 (143)
+|+|.|+..++.+++- +.+.| ||..|..+ |.+ +| .-|.+++.+|+.+.
T Consensus 80 ~G~v~dwd~~e~iw~~-~f~~l~v~~~~~pvllte-~~~---~~~~~re~~~e~lFE~~~ 134 (380)
T PTZ00466 80 HGIIENWNDMENIWIH-VYNSMKINSEEHPVLLTE-APL---NPQKNKEKIAEVFFETFN 134 (380)
T ss_pred CCeECCHHHHHHHHHH-HHhhcccCCccCeEEEec-Ccc---ccHHHHHHHHHHHhccCC
Confidence 7999999999998886 54433 44444312 222 33 34888888888664
No 26
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=30.09 E-value=1.9e+02 Score=20.10 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=45.1
Q ss_pred CceeeEEEEEEEEeeC-----CCCCCeEeehHHHHHHHHhhhhccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q psy16342 45 GHGHNYTVEVTLKGPI-----SKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIM 119 (143)
Q Consensus 45 lHGH~y~v~v~v~g~~-----~~~~g~viDF~~lk~~i~~~i~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l 119 (143)
.-|-.+.|.+++.-+. .|+-+-.+|+..+-+.+.+.+ .. -+ | -+.|.+|.-|.+.+...
T Consensus 27 ~~~Q~~~vdl~l~~d~~~a~~sDdl~~tidY~~v~~~i~~~v-~~---------~~-~----~llE~la~~Ia~~i~~~- 90 (120)
T PRK11245 27 NNRQDVVINVTIHYPADKARTSDDIDDALNYRTITKNIIQHV-EN---------NR-F----SLLEKLTQDVLDIAREH- 90 (120)
T ss_pred ccCCeEEEEEEEecCchhhccccCHHHhcCHHHHHHHHHHHH-hc---------CC-c----chHHHHHHHHHHHHHcc-
Confidence 5788899999986442 122445788998888877622 11 11 2 36888898888877664
Q ss_pred CCCceEEEEEEE
Q psy16342 120 KEPELLYEVKLY 131 (143)
Q Consensus 120 ~~~~~l~~V~v~ 131 (143)
+ ++..++|+|.
T Consensus 91 ~-~v~~v~v~v~ 101 (120)
T PRK11245 91 P-WVTYAEVEID 101 (120)
T ss_pred C-CccEEEEEEE
Confidence 4 3445555554
No 27
>PTZ00004 actin-2; Provisional
Probab=30.04 E-value=85 Score=26.20 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCeEeehHHHHHHHHhhhhccC-----CcccccCcCCCCCCCCCCHHHHHHHHHHHHH
Q psy16342 64 RGMVLNINDLKVYMVDAIMVPM-----DHKNLDKDVPYFADVVSTSENVAIFIWNNLK 116 (143)
Q Consensus 64 ~g~viDF~~lk~~i~~~i~~~l-----DH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~ 116 (143)
+|++.|+..++.+++..+...| ||..|. ..|.+. ....-|.+++.+|+.+.
T Consensus 74 ~G~i~d~d~~e~i~~~~~~~~l~v~~~~~pvll-te~~~~-~~~~r~~~~e~lFE~~~ 129 (378)
T PTZ00004 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL-TEAPLN-PKANREKMTQIMFETHN 129 (378)
T ss_pred CCEEcCHHHHHHHHHHHHHhhcccCCccCccee-ecCCCC-cHHHHHHHHHHHHhhcC
Confidence 7999999999998876222222 444443 112221 11233778888887764
No 28
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=29.60 E-value=1.5e+02 Score=18.76 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCceEEEEEEEecCCCEEEEe
Q psy16342 102 STSENVAIFIWNNLKKIMKEPELLYEVKLYETDKNIVLYR 141 (143)
Q Consensus 102 pT~E~lA~~i~~~l~~~l~~~~~l~~V~v~Et~~~~a~y~ 141 (143)
-+.|.|..-|.++|.+.+|. ..|+|.-+..++.+-.
T Consensus 4 ga~~AL~~EL~kRl~~~yPd----~~v~Vr~~s~~~l~v~ 39 (65)
T PF06183_consen 4 GALEALESELTKRLHRQYPD----AEVRVRPGSANGLSVS 39 (65)
T ss_dssp THHHHHHHHHHHHHHHH-SS-----EEEEEEESS-EEEEE
T ss_pred cHHHHHHHHHHHHHHHHCCC----ceEeeeecccCccccC
Confidence 46788999999999999996 6667776666665544
No 29
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=29.58 E-value=2.1e+02 Score=20.40 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=38.5
Q ss_pred ceeeE-EEEEEEEeeCCCCCCeEe-----ehHHHHHHHHhhhhccCCccc--ccCcCCCCCCCCCCHHHHHHHHHHHHHh
Q psy16342 46 HGHNY-TVEVTLKGPISKERGMVL-----NINDLKVYMVDAIMVPMDHKN--LDKDVPYFADVVSTSENVAIFIWNNLKK 117 (143)
Q Consensus 46 HGH~y-~v~v~v~g~~~~~~g~vi-----DF~~lk~~i~~~i~~~lDH~~--Ln~d~~~f~~~~pT~E~lA~~i~~~l~~ 117 (143)
+.-+| .|.|+.+| ..|.| ||..|.+.+...| ||-++ |- ++|.........+.+...+...|+.
T Consensus 24 ~k~~~~~v~V~cqg-----~sW~VkRSyEdfr~LD~~LHrCi---yDRr~S~L~-eL~~~~~~~~~~~~~~~~l~~YL~R 94 (114)
T cd07278 24 GKELVYLVQVQCQG-----KSWLVKRSYDDFRMLDKHLHQCI---YDRKFSQLT-ELPEECIEKREQQNLHQVLSDYLKR 94 (114)
T ss_pred CCceEEEEEEEeCC-----cceEEEeeHHHHHHHHHHHHHHH---Hhhhhhccc-cCCccccccchHHHHHHHHHHHHHH
Confidence 44444 36676665 34555 7999999888766 66666 43 5665543345666666666555543
No 30
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=26.76 E-value=1.4e+02 Score=20.70 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=17.1
Q ss_pred eEEEEEEEEeeCCCCCCeEeehHHHHHHHHh
Q psy16342 49 NYTVEVTLKGPISKERGMVLNINDLKVYMVD 79 (143)
Q Consensus 49 ~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~ 79 (143)
+-.+.++++|. =+||..++++|+.
T Consensus 46 te~lkitiEG~-------~id~d~i~~~Ie~ 69 (95)
T PF02680_consen 46 TENLKITIEGD-------DIDFDEIKEAIEE 69 (95)
T ss_dssp EEEEEEEEEES-------SE-HHHHHHHHHH
T ss_pred ccEEEEEEEeC-------CCCHHHHHHHHHH
Confidence 44566777665 3789999999886
No 31
>PTZ00452 actin; Provisional
Probab=25.61 E-value=69 Score=26.86 Aligned_cols=51 Identities=12% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCeEeehHHHHHHHHhhhhccC-----CcccccCcCCCCCCCCCCHHHHHHHHHHHHH
Q psy16342 64 RGMVLNINDLKVYMVDAIMVPM-----DHKNLDKDVPYFADVVSTSENVAIFIWNNLK 116 (143)
Q Consensus 64 ~g~viDF~~lk~~i~~~i~~~l-----DH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~ 116 (143)
+|+|.|+..++.+++-.+.+.| ||..|..+ |.+. ....-|.+++.+|+.+.
T Consensus 73 ~G~I~dwd~~e~iw~~~f~~~l~v~p~~~pvlitE-~~~~-~~~~Re~l~eilFE~~~ 128 (375)
T PTZ00452 73 NGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTD-APMN-SKFNRERMTQIMFETFN 128 (375)
T ss_pred CCEEcCHHHHHHHHHHHHHhhcCCCcccCceeeec-CCCC-CHHHHHHHHHHHhhccC
Confidence 7999999999998875223333 66665422 2221 12345778888887664
No 32
>COG5418 Predicted secreted protein [Function unknown]
Probab=25.51 E-value=1.5e+02 Score=22.35 Aligned_cols=36 Identities=11% Similarity=-0.086 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEecCCCEEEE
Q psy16342 105 ENVAIFIWNNLKKIMKEPELLYEVKLYETDKNIVLY 140 (143)
Q Consensus 105 E~lA~~i~~~l~~~l~~~~~l~~V~v~Et~~~~a~y 140 (143)
+.||..|.+.|.+.-|.+++++-|.|--+|+|+..-
T Consensus 80 ~ki~~pi~~~l~e~k~d~~kii~IGV~~SpTCgVy~ 115 (164)
T COG5418 80 RKIADPIGRVLEEEKPDGIKIIFIGVKGSPTCGVYT 115 (164)
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEecCCCCccceEe
Confidence 334444444444554668889999999999988654
No 33
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=24.03 E-value=1.1e+02 Score=18.87 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCCceEEEEEEEec
Q psy16342 111 IWNNLKKIMKEPELLYEVKLYET 133 (143)
Q Consensus 111 i~~~l~~~l~~~~~l~~V~v~Et 133 (143)
+++.|...+|+++.+.++.+.+.
T Consensus 2 ll~~L~~~~P~~v~l~~l~~~~~ 24 (78)
T PF05137_consen 2 LLDELARALPEGVWLTSLSINGN 24 (78)
T ss_pred hHHHHHhhCCCCEEEEEEEEeCC
Confidence 56788899999999998886544
No 34
>TIGR02940 anfO_nitrog Fe-only nitrogenase accessory protein AnfO. Members of this protein family, called Anf1 in Rhodobacter capsulatus and AnfO in Azotobacter vinelandii, are found only in species with the Fe-only nitrogenase and are encoded immediately downstream of the structural genes in the above named species.
Probab=22.29 E-value=1.4e+02 Score=23.57 Aligned_cols=40 Identities=13% Similarity=0.424 Sum_probs=33.4
Q ss_pred ceeeEEEEEEEEeeCCCCCCeEeehHHHHHHHHhhhhccCCcccc
Q psy16342 46 HGHNYTVEVTLKGPISKERGMVLNINDLKVYMVDAIMVPMDHKNL 90 (143)
Q Consensus 46 HGH~y~v~v~v~g~~~~~~g~viDF~~lk~~i~~~i~~~lDH~~L 90 (143)
||+.|++.=++.-...+..|| ..|+..+.+ +...||+-=+
T Consensus 27 ~~~~W~~~~ei~~~v~~~~gl----~~iR~~~~~-~v~~L~dCki 66 (214)
T TIGR02940 27 DGGEWKVLTRIENAVCPAKGL----AAVRASLAD-MVKQLDDVRV 66 (214)
T ss_pred CCCeEEEEEEEEeccCcccCH----HHHHHHHHH-HHHhcCCcEE
Confidence 899999998888776665555 999999999 9999998754
No 35
>PTZ00281 actin; Provisional
Probab=22.27 E-value=81 Score=26.36 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCCeEeehHHHHHHHHhhhhccC-----CcccccCcCCCCCCCCCCHHHHHHHHHHHHH
Q psy16342 63 ERGMVLNINDLKVYMVDAIMVPM-----DHKNLDKDVPYFADVVSTSENVAIFIWNNLK 116 (143)
Q Consensus 63 ~~g~viDF~~lk~~i~~~i~~~l-----DH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~ 116 (143)
++|+|.|+..+++.++-.+.+.| ||..|. ..|.+. ....-|.+++.+|+.+.
T Consensus 73 ~~G~i~dwd~~e~l~~~~f~~~l~v~p~~~pvll-te~~~~-~~~~re~l~e~lFE~~~ 129 (376)
T PTZ00281 73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL-TEAPLN-PKANREKMTQIMFETFN 129 (376)
T ss_pred cCCEEcCHHHHHHHHHHHHHhhccCCCccCeEEE-ecCCCC-cHHHHHHHHHHHhcccC
Confidence 37999999999998875222332 555553 122221 12346777777777653
No 36
>COG2848 Uncharacterized conserved protein [Function unknown]
Probab=21.67 E-value=1.5e+02 Score=25.76 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=41.7
Q ss_pred ehHHHHHHHHhhhhccCCcccccCcCCCCCCCCCCHHHHHHHHHHHHHhhcC----C--------CceEEEEEEEecCCC
Q psy16342 69 NINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMK----E--------PELLYEVKLYETDKN 136 (143)
Q Consensus 69 DF~~lk~~i~~~i~~~lDH~~Ln~d~~~f~~~~pT~E~lA~~i~~~l~~~l~----~--------~~~l~~V~v~Et~~~ 136 (143)
|-+++.+.|+---...||=+-+--.+..++...+..|.+++-|++++..+.. . ++..+.+|++=||..
T Consensus 2 ~~~~i~eti~mi~~~~ldIRaITigi~l~d~i~~~~~~~~~~i~~ki~~~~~~lve~~~~i~~e~GvpIvnkRisVtPis 81 (445)
T COG2848 2 DSNEILETIEMIEEQNLDIRAITIGISLLDCISSDIEELAENIYEKITTKALKLVETAEELTAELGVPIVNKRISVTPIS 81 (445)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEeeeehhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceeeeEEeecchh
Confidence 4566666666534456777665211222223456777777777777655431 1 778888999999874
No 37
>KOG4132|consensus
Probab=20.91 E-value=1.3e+02 Score=24.40 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHH--------------------HhhcCC-CceEEEEEEEecC
Q psy16342 103 TSENVAIFIWNNL--------------------KKIMKE-PELLYEVKLYETD 134 (143)
Q Consensus 103 T~E~lA~~i~~~l--------------------~~~l~~-~~~l~~V~v~Et~ 134 (143)
-+|.||.+|.+.. ..+|.+ ++++-++.||||.
T Consensus 116 Na~~LaD~Ive~~~~~~alPLLfpcGn~~rdil~kkL~~~G~~Vds~~VY~T~ 168 (260)
T KOG4132|consen 116 NAEILADLIVETFTDKRALPLLFPCGNLRRDILPKKLHDKGIRVDSCEVYETR 168 (260)
T ss_pred cHHHHhHhhhhcCCCcccCceEEEcccchhHHHHHHHHhCCceeeEEEEEeee
Confidence 5888999888732 222222 7889999999985
No 38
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=20.03 E-value=2.1e+02 Score=20.84 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=34.4
Q ss_pred cCCcccccCcCCCCCCCC--CCHHHHHHHHHHHHHhhcCCCceEEEEEEEecCCCEEEEe
Q psy16342 84 PMDHKNLDKDVPYFADVV--STSENVAIFIWNNLKKIMKEPELLYEVKLYETDKNIVLYR 141 (143)
Q Consensus 84 ~lDH~~Ln~d~~~f~~~~--pT~E~lA~~i~~~l~~~l~~~~~l~~V~v~Et~~~~a~y~ 141 (143)
.=+.++|. +++.|.... --.|.+|.++.+.|...+.-+.--.+|.=.+.+..-..|+
T Consensus 62 ~~eGRYLl-~l~~~~s~~plr~kE~~ak~vA~~L~~rF~vea~yfSV~gs~~~D~IP~Y~ 120 (132)
T PF14468_consen 62 NKEGRYLL-DLDLFDSDWPLRKKEAMAKHVAGWLRHRFGVEAGYFSVLGSQDYDGIPSYN 120 (132)
T ss_pred ccCceeee-ecccccCCCchHHHHHHHHHHHHHHHHHhCcceeEEEecCCCCCCcCcccC
Confidence 46778876 666553212 2589999999999999886333233443344444444443
Done!