RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16342
(143 letters)
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin
biosynthesis, phosphate elimination, PTE synthesis; HET:
BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A
1gtq_A 3i2b_A
Length = 140
Score = 158 bits (400), Expect = 5e-51
Identities = 83/134 (61%), Positives = 104/134 (77%), Gaps = 1/134 (0%)
Query: 10 YLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLN 69
L+R+ FSA HRLHSP L+ EEN +GKCNN +GHGHNY V VT+ G I GMV+N
Sbjct: 8 RLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVMN 67
Query: 70 INDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVK 129
+ DLK YM +AIM P+DHKNLD DVPYFADVVST+ENVA++IW NL++++ LY+VK
Sbjct: 68 LTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGA-LYKVK 126
Query: 130 LYETDKNIVLYRGE 143
+YETD NIV+Y+GE
Sbjct: 127 VYETDNNIVVYKGE 140
>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase;
tetrahydrobiopterin biosynthesis, phosphate elimination,
PTE synthesis; 1.80A {Caenorhabditis elegans} SCOP:
d.96.1.2
Length = 140
Score = 157 bits (399), Expect = 7e-51
Identities = 69/139 (49%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Query: 4 SKVPIGYLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKE 63
++PI + RV+ FSA HRLHS L+D ENK T+GKCNN +GHGHNY +V L+G +
Sbjct: 2 FRMPIVTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPT 61
Query: 64 RGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPE 123
GMV ++ LK + ++ +DH+NLDKDV +F VSTSENVAI+++ LK +M P
Sbjct: 62 SGMVYDLAKLK-KEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPS 120
Query: 124 LLYEVKLYETDKNIVLYRG 142
+LY+V + ET KNI Y+G
Sbjct: 121 VLYKVTIEETPKNIFTYKG 139
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A
{Streptomyces coelicolor}
Length = 152
Score = 118 bits (296), Expect = 4e-35
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 21/142 (14%)
Query: 10 YLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLN 69
+T + H +G HG + V+ T + E +V++
Sbjct: 23 SITVRDHIMIAHSFRGDV---------FGPAQRLHGA--TFLVDATFRREQLDEDNIVVD 71
Query: 70 INDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPEL----- 124
I + A++ ++++NLD + P FA V +++E +A I + L + + + L
Sbjct: 72 IGLATQ-ELGAVVGALNYRNLD-NEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGAR 129
Query: 125 ---LYEVKLYETDKNIVLYRGE 143
V L+E+ Y
Sbjct: 130 GLAGLTVTLHESHVAWASYERA 151
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase;
tetrahydrobiopterin biosynthesis, PTP synthase, PTPS,
lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A
3qna_A*
Length = 138
Score = 116 bits (292), Expect = 2e-34
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 10 YLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLN 69
L + F + HRL + KC HGH ++ V + ++G + G + +
Sbjct: 22 ELFKEFTFESAHRLP--------HVPEGHKCGRLHGH--SFRVAIHIEGEVDPHTGWIRD 71
Query: 70 INDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVK 129
++K + I +DH L+ D+P + TSEN+ +IW LK ++ E L +V+
Sbjct: 72 FAEIKA-IFKPIYEQLDHNYLN-DIPGLEN--PTSENLCRWIWQQLKPLLPE---LSKVR 124
Query: 130 LYETDKNIVLYRGE 143
++ET + YRG+
Sbjct: 125 VHETCTSGCEYRGD 138
>2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin
synthase (PTPS), structural G NPPSFA; 2.10A {Pyrococcus
horikoshii} PDB: 2dtt_A*
Length = 115
Score = 111 bits (280), Expect = 5e-33
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 21/131 (16%)
Query: 10 YLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLN 69
+ F A H + + HGH + +EV ++G I + G V++
Sbjct: 4 RIIVRTSFDAAHAVKV-----------GDHWEDVHGH--TFFLEVAIEGEI--KNGYVMD 48
Query: 70 INDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVK 129
+L+ +V+ I +DH+NL+ T+EN+A++I ++ + L V
Sbjct: 49 FLELRK-IVEEITKELDHRNLNNIFEN-----PTTENIALWIGERIRDKLPPYVKLKRVV 102
Query: 130 LYETDKNIVLY 140
L+E N V
Sbjct: 103 LWEGKDNGVEL 113
>3jyg_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.95A {Wolinella
succinogenes}
Length = 188
Score = 100 bits (249), Expect = 1e-27
Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 50/180 (27%)
Query: 10 YLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLN 69
+ + F HR+ S L + + C + HGH V V L+ +RGMV +
Sbjct: 6 QIAKEFDFCYGHRVWSQELNPDFSLDPCLSCRHLHGH--QGKVIVHLESR-ELQRGMVTD 62
Query: 70 INDLKVYMVDAIMVPMDHKNL-DKDVPYFA------------------------------ 98
L + I +DH+ + D D P F
Sbjct: 63 FAHLN-WFKRFIDEVLDHRFIIDIDDPLFPTLLPHFADKSALVWMEEGYARVDFERIKGE 121
Query: 99 --------------DVVSTSENVAIFIWNNLKKIMKEPEL-LYEVKLYETDKNIVLYRGE 143
V TSE++A ++ L+ ++ + + V+ ET K+ E
Sbjct: 122 SSPILELYESFVVVRFVPTSESIASWLLELLRSRIQPLGVKVSSVEFLETPKSRARVYNE 181
>3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS,
metal-binding, tetrahydrobiopterin biosynthesis, folate
biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} PDB:
2a0s_A* 3m0n_A* 3lze_A*
Length = 180
Score = 71.9 bits (176), Expect = 8e-17
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 51/164 (31%)
Query: 16 KFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKV 75
F+ H + G HGH NY V + L+G I G V++ + LK
Sbjct: 31 SFNCAHFIAF-----------KGFRETLHGH--NYNVSLRLRGNIQ-GDGYVIDFSILKE 76
Query: 76 YMVDAIMVPMDHKNL------------------------------DKDVPYFADVVSTSE 105
V + +DH + +D S++E
Sbjct: 77 K-VRKVCKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTE 135
Query: 106 NVAIFIWNNLKKIMKEPEL------LYEVKLYETDKNIVLYRGE 143
+ ++I N L + + P L EV + E+
Sbjct: 136 EIGLYILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVHRN 179
>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of
pathogenic protozoa consortium, SGPP, structural
genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum}
SCOP: d.96.1.2
Length = 181
Score = 69.2 bits (169), Expect = 8e-16
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 16 KFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKV 75
F+ H + G HGH NY V + ++G + + G V++ + LK
Sbjct: 32 SFNCAHFIAYN-----------GFRETLHGH--NYNVSLKVRGYVR-DDGYVIDFSILKE 77
Query: 76 YMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDK 135
V + +DH + + N+ I +N + E + + + + +
Sbjct: 78 K-VKKVCNKLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTE 136
Query: 136 NIVLY 140
I Y
Sbjct: 137 EIGQY 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.010
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
Query: 4 SKVPIGYLTRVEKFSACHR-L------HSPHLTDEENKI-TYGKCNNFHGHGH--NYTVE 53
S++P + R KFS +R L HS L + I NN + V
Sbjct: 405 SRIP--FSERKLKFS--NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 54 VTLKGPISKERGMVLNINDLKVYMVDAIMV-PMD 86
T G S R + +I++ +VD I+ P+
Sbjct: 461 DTFDG--SDLRVLSGSISER---IVDCIIRLPVK 489
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.10
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 6/22 (27%)
Query: 113 NNLKKIMKEPELLYEVKLYETD 134
LKK+ + L KLY D
Sbjct: 20 QALKKL--QASL----KLYADD 35
Score = 24.9 bits (53), Expect = 9.3
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 20/49 (40%)
Query: 57 KGPISKERGMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSE 105
K + K L LK+Y D+ P A + +T E
Sbjct: 19 KQALKK-----LQ-ASLKLYADDS-------------APALA-IKATME 47
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 27.5 bits (62), Expect = 1.9
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 15/57 (26%)
Query: 64 RGM--VLNINDLKVYMVDAIMVPMDHKNL-DK--------DVPYFADVVSTSENVAI 109
R M V + DL+ Y A+ V D L D DV D + E V I
Sbjct: 723 RAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDV----DAICDGEMVLI 775
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; NMR {Bacillus halodurans}
Length = 119
Score = 26.3 bits (58), Expect = 2.4
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 47 GHNYTVEVTLKGPISKERGMVLNINDLKVYMVDA-------IMVPMDHKNLDKDVPY 96
TV+V L+GP +V+ VD V ++H+ D+
Sbjct: 29 EQTETVQVDLEGPRGVLTVFRFARPSYEVF-VDLTEAGEGSHTVDVEHRGFPGDLAV 84
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 25.9 bits (57), Expect = 4.8
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 95 PYFADVVSTSENVAIFIWNNLKKIMKE 121
S V+ + +L +I++
Sbjct: 91 TVQFQAASVDSWVSNAV-TSLTRIIQR 116
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD,
antiparallel coil, motor protein, DSH; NMR
{Chlamydomonas reinhardtii}
Length = 155
Score = 25.7 bits (57), Expect = 5.0
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 79 DAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVKLYETDKNI 137
+AI + K +V W KK++ E + L ++ ++ D +I
Sbjct: 46 EAICIMKGVKPARVKDTASGRMVDDY-------WEASKKMLMEFDFLDSLRKFDKD-HI 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 6.0
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 110 FIWNNLKKIMKEPELLYEVKLYETDKNIVLYRG 142
F+ + +K ++P ++ +Y ++ LY
Sbjct: 93 FLMSPIKTEQRQPSMMTR--MYIEQRD-RLYND 122
Score = 25.6 bits (55), Expect = 9.3
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 84 PMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKK-----IMKEPELLYEVKLYETDKNIV 138
P +++ + + F + IW ++ K ++ + L++ L E
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK---LHKYSLVEKQPKES 424
Query: 139 LYR 141
Sbjct: 425 TIS 427
>2lio_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 136
Score = 24.7 bits (54), Expect = 9.4
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 97 FADVVSTSENVAIFIWNN 114
FAD V + + F W
Sbjct: 34 FADKVVSDDKTVTFCWGK 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,201,898
Number of extensions: 122425
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 25
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)