RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16342
         (143 letters)



>d2g64a1 d.96.1.2 (A:1-139) 6-pyruvoyl tetrahydropterin synthase
           {Caenorhabditis elegans [TaxId: 6239]}
          Length = 139

 Score =  160 bits (405), Expect = 3e-52
 Identities = 69/138 (50%), Positives = 95/138 (68%), Gaps = 1/138 (0%)

Query: 5   KVPIGYLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKER 64
           ++PI  + RV+ FSA HRLHS  L+D ENK T+GKCNN +GHGHNY  +V L+G +    
Sbjct: 3   RMPIVTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTS 62

Query: 65  GMVLNINDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPEL 124
           GMV ++  LK   +  ++  +DH+NLDKDV +F   VSTSENVAI+++  LK +M  P +
Sbjct: 63  GMVYDLAKLK-KEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSV 121

Query: 125 LYEVKLYETDKNIVLYRG 142
           LY+V + ET KNI  Y+G
Sbjct: 122 LYKVTIEETPKNIFTYKG 139


>d1b66a_ d.96.1.2 (A:) 6-pyruvoyl tetrahydropterin synthase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 138

 Score =  157 bits (399), Expect = 2e-51
 Identities = 83/134 (61%), Positives = 104/134 (77%), Gaps = 1/134 (0%)

Query: 10  YLTRVEKFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLN 69
            L+R+  FSA HRLHSP L+ EEN   +GKCNN +GHGHNY V VT+ G I    GMV+N
Sbjct: 6   RLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVMN 65

Query: 70  INDLKVYMVDAIMVPMDHKNLDKDVPYFADVVSTSENVAIFIWNNLKKIMKEPELLYEVK 129
           + DLK YM +AIM P+DHKNLD DVPYFADVVST+ENVA++IW NL++++     LY+VK
Sbjct: 66  LTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGA-LYKVK 124

Query: 130 LYETDKNIVLYRGE 143
           +YETD NIV+Y+GE
Sbjct: 125 VYETDNNIVVYKGE 138


>d2a0sa1 d.96.1.2 (A:18-180) 6-pyruvoyl tetrahydropterin synthase
           {Plasmodium vivax [TaxId: 5855]}
          Length = 163

 Score = 72.8 bits (178), Expect = 8e-18
 Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 51/162 (31%)

Query: 16  KFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPISKERGMVLNINDLKV 75
            F+  H +              G     HGH  NY V + L+G I    G V++ + LK 
Sbjct: 14  SFNCAHFIAFK-----------GFRETLHGH--NYNVSLRLRGNIQ-GDGYVIDFSILKE 59

Query: 76  YMVDAIMVPMDHKNL------------------------------DKDVPYFADVVSTSE 105
            +   +   +DH  +                               +D        S++E
Sbjct: 60  KV-RKVCKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTE 118

Query: 106 NVAIFIWNNLKKIMKEPEL------LYEVKLYETDKNIVLYR 141
            + ++I N L + +  P L        EV + E+        
Sbjct: 119 EIGLYILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVH 160


>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate
          reductase), N-terminal domain {Shewanella oneidensis
          [TaxId: 70863]}
          Length = 90

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 5/46 (10%), Positives = 10/46 (21%)

Query: 16 KFSACHRLHSPHLTDEENKITYGKCNNFHGHGHNYTVEVTLKGPIS 61
          +   C   H       +    + +C + HG                
Sbjct: 10 ESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNL 55


>d1tg7a4 b.71.1.5 (A:395-569) Beta-galactosidase LacA, domain 2
           {Penicillium sp. [TaxId: 5081]}
          Length = 175

 Score = 24.4 bits (53), Expect = 5.4
 Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 5/38 (13%)

Query: 42  NFHGHGHNYTVEVTLKGPISKERGMVLNINDLKVYMVD 79
           +    G    V   +          ++ +  LKV+++D
Sbjct: 143 SSKKVGKALVVAWDVSTARR-----IVQVGSLKVFLLD 175


>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease
           {Escherichia coli [TaxId: 562]}
          Length = 134

 Score = 24.1 bits (52), Expect = 6.7
 Identities = 6/21 (28%), Positives = 7/21 (33%)

Query: 91  DKDVPYFADVVSTSENVAIFI 111
           D  +P   D V       IF 
Sbjct: 21  DASLPGRPDFVVDEYRCVIFT 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 542,008
Number of extensions: 23794
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 13
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.7 bits)