Query psy16344
Match_columns 218
No_of_seqs 158 out of 1059
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0605 SodA Superoxide dismut 100.0 1.2E-79 2.6E-84 517.5 21.1 197 19-218 1-204 (204)
2 PRK10543 superoxide dismutase; 100.0 6.5E-77 1.4E-81 500.4 20.4 189 20-213 1-192 (193)
3 PLN02184 superoxide dismutase 100.0 6.3E-76 1.4E-80 500.5 21.7 193 18-216 7-208 (212)
4 PRK10925 superoxide dismutase; 100.0 4.8E-76 1E-80 499.5 20.5 192 20-215 1-205 (206)
5 PLN02471 superoxide dismutase 100.0 7.2E-76 1.6E-80 505.2 21.5 197 19-215 28-229 (231)
6 PTZ00078 Superoxide dismutase 100.0 1.1E-73 2.4E-78 480.8 20.7 188 25-217 1-192 (193)
7 PLN02622 iron superoxide dismu 100.0 1.5E-73 3.2E-78 498.0 21.9 196 18-216 44-248 (261)
8 PLN02685 iron superoxide dismu 100.0 6.5E-73 1.4E-77 500.5 21.9 195 18-216 43-261 (299)
9 KOG0876|consensus 100.0 8.2E-71 1.8E-75 468.1 18.1 199 18-217 24-231 (234)
10 PF02777 Sod_Fe_C: Iron/mangan 100.0 5.8E-48 1.3E-52 295.9 12.1 105 106-212 1-106 (106)
11 PF00081 Sod_Fe_N: Iron/mangan 100.0 1E-30 2.2E-35 192.2 6.3 80 21-102 1-82 (82)
12 PF13348 Y_phosphatase3C: Tyro 50.8 19 0.00041 24.5 2.9 19 111-129 33-51 (68)
13 COG4700 Uncharacterized protei 38.6 30 0.00066 29.9 2.8 22 44-65 227-248 (251)
14 TIGR02118 conserved hypothetic 35.6 33 0.00072 25.2 2.4 22 36-58 10-31 (100)
15 PF08025 Antimicrobial_3: Spid 30.6 70 0.0015 19.5 2.7 25 110-134 7-31 (37)
16 PF09418 DUF2009: Protein of u 29.4 78 0.0017 30.4 4.2 32 110-141 381-414 (458)
17 PF07338 DUF1471: Protein of u 27.5 1.9E+02 0.0042 19.3 5.3 38 119-156 13-50 (56)
18 PF07110 EthD: EthD domain; I 27.2 64 0.0014 22.6 2.6 23 36-58 1-23 (95)
19 PF05416 Peptidase_C37: Southa 26.7 42 0.0009 32.2 1.9 48 137-189 377-425 (535)
20 KOG0394|consensus 21.8 59 0.0013 27.8 1.7 19 117-135 94-112 (210)
21 PF12826 HHH_2: Helix-hairpin- 21.1 74 0.0016 21.6 1.9 31 109-139 12-42 (64)
No 1
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-79 Score=517.47 Aligned_cols=197 Identities=52% Similarity=0.929 Sum_probs=183.4
Q ss_pred ccceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhc-C-c--cccccchhhhhH
Q psy16344 19 QGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQL-G-P--ALKFNGGGHINH 94 (218)
Q Consensus 19 ~~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~-~-~--~~~~n~~~~~NH 94 (218)
++.|+||+|||+|++|||+||++||++||+|||++||++||+++++++++++..++++++.. . . .++||+|||+||
T Consensus 1 ~~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~nn~~gh~NH 80 (204)
T COG0605 1 RMAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPAALFNNAGGHWNH 80 (204)
T ss_pred CCCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccHHHHhcchhhhhH
Confidence 47899999999999999999999999999999999999999999998655888888877642 2 2 379999999999
Q ss_pred HHHHHhhcCC-C-CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCCCC
Q psy16344 95 ALFWKMLNKN-G-GKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGL 171 (218)
Q Consensus 95 ~~f~~~L~p~-~-~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~~~ 171 (218)
+|||++|+|. + ++|+|+|+++|+++|||+|+||++|+++|.++|||||+|||+|+. ++|.|++|+||| |+ +.+.
T Consensus 81 ~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~~-~kL~i~~t~n~~~p~--~~~~ 157 (204)
T COG0605 81 SLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDPD-GKLEIVSTYNQDTPL--MWGS 157 (204)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECCC-CcEEEEeccCCCCcc--cCCC
Confidence 9999999996 4 799999999999999999999999999999999999999999986 699999999999 99 7789
Q ss_pred eeeeeeccCchhhHhhhcCChHHHHHHHhcCCChHHHHHHHHHHhcC
Q psy16344 172 KPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS 218 (218)
Q Consensus 172 ~PLL~iDvWEHAYyldY~n~r~~Yi~~~w~~InW~~V~~r~~~a~~~ 218 (218)
+|||||||||||||+||||+|++||++||++|||++|++||++|++.
T Consensus 158 ~PiL~lDvWEHAYYldY~N~R~~Yv~afwnvVNW~~V~~r~~~a~~~ 204 (204)
T COG0605 158 VPLLGLDVWEHAYYLDYGNRRPDYVEAFWNVVNWDEVEERFEAAKKE 204 (204)
T ss_pred CceEEecchHHHHHHHhccCcHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998763
No 2
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=6.5e-77 Score=500.41 Aligned_cols=189 Identities=39% Similarity=0.727 Sum_probs=174.8
Q ss_pred cceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhc-CccccccchhhhhHHHHH
Q psy16344 20 GPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQL-GPALKFNGGGHINHALFW 98 (218)
Q Consensus 20 ~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~-~~~~~~n~~~~~NH~~f~ 98 (218)
|.|+||+|||++++|||+||++||++||+|||++||++||+++++++ ++..++++++.. ...+++|+|||+||+|||
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~--~~~~~l~~ii~~~~~~ifnna~g~~NH~lfw 78 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTA--FEGKSLEEIVRSSEGGVFNNAAQVWNHTFYW 78 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcch--hhcCCHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999863 566778887743 345777888899999999
Q ss_pred HhhcCCC-CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCCCCeeeee
Q psy16344 99 KMLNKNG-GKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFG 176 (218)
Q Consensus 99 ~~L~p~~-~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~~~~PLL~ 176 (218)
+||+|.+ ++|++.|+++|+++|||+|+||++|+++|.++|||||||||+|+ +|+|.|++|.|+| |+ ..+.+||||
T Consensus 79 ~~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~-~~~L~I~~t~n~~~p~--~~~~~PlL~ 155 (193)
T PRK10543 79 NCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA-DGKLAIVSTSNAGTPL--TTDATPLLT 155 (193)
T ss_pred HhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCCEEEEeccCCCCCc--CCCCEeEEE
Confidence 9999976 58999999999999999999999999999999999999999997 4899999999999 98 677899999
Q ss_pred eccCchhhHhhhcCChHHHHHHHhcCCChHHHHHHHH
Q psy16344 177 IDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYA 213 (218)
Q Consensus 177 iDvWEHAYyldY~n~r~~Yi~~~w~~InW~~V~~r~~ 213 (218)
|||||||||+||||+|++||++||++|||++|++||+
T Consensus 156 lDvWEHAYyldY~n~r~~Yv~~~w~~inW~~v~~r~~ 192 (193)
T PRK10543 156 VDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLA 192 (193)
T ss_pred EecchhhhHHHhccCHHHHHHHHHhccCHHHHHHHhc
Confidence 9999999999999999999999999999999999995
No 3
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=6.3e-76 Score=500.53 Aligned_cols=193 Identities=33% Similarity=0.645 Sum_probs=177.0
Q ss_pred cccceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhcC------ccccccchhh
Q psy16344 18 LQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLG------PALKFNGGGH 91 (218)
Q Consensus 18 ~~~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~~------~~~~~n~~~~ 91 (218)
..+.|+||||||+|++|||+||++||++||+|||++||++||+++++++ ++..++++|+... ..+.||+|||
T Consensus 7 ~~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~--~~~~~l~~ii~~~~~~~~~~~ifnnagg~ 84 (212)
T PLN02184 7 VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTE--LEGKPLEHIIHSTYNNGDLLPAFNNAAQA 84 (212)
T ss_pred hccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCch--hhcCCHHHHHHHhcccchHHHHHHhHHHH
Confidence 5788999999999999999999999999999999999999999998873 5667888887421 1256678899
Q ss_pred hhHHHHHHhhcCCC-CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCC
Q psy16344 92 INHALFWKMLNKNG-GKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETT 169 (218)
Q Consensus 92 ~NH~~f~~~L~p~~-~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~ 169 (218)
+||+|||+||+|++ ++|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+ ++|.|++|+|++ |+ +.
T Consensus 85 ~NH~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~~--~~L~i~~t~n~~~P~--~~ 160 (212)
T PLN02184 85 WNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSN--EKLKVVKTPNAVNPL--VL 160 (212)
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEeecCCCCCc--cC
Confidence 99999999999977 48999999999999999999999999999999999999999985 799999999999 98 67
Q ss_pred CCeeeeeeccCchhhHhhhcCChHHHHHHHhc-CCChHHHHHHHHHHh
Q psy16344 170 GLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYD-IMNWNYINELYAKAK 216 (218)
Q Consensus 170 ~~~PLL~iDvWEHAYyldY~n~r~~Yi~~~w~-~InW~~V~~r~~~a~ 216 (218)
+.+|||||||||||||+||||+|++||++||+ +|||++|++||.++.
T Consensus 161 ~~~PlL~iDvWEHAYyldY~n~r~~Yl~~~w~~~inW~~v~~r~~~~~ 208 (212)
T PLN02184 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAK 208 (212)
T ss_pred CCeeEEEEecchhhhHHHhccCHHHHHHHHHHhccCHHHHHHHHHHHh
Confidence 88999999999999999999999999999995 899999999998765
No 4
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=4.8e-76 Score=499.53 Aligned_cols=192 Identities=44% Similarity=0.806 Sum_probs=173.7
Q ss_pred cceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhc--------Cccccccchhh
Q psy16344 20 GPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQL--------GPALKFNGGGH 91 (218)
Q Consensus 20 ~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~--------~~~~~~n~~~~ 91 (218)
|.|+||+|||+|++|||+||++||++||+|||++||++||++++++++ ++..++++++.. ...++||+|||
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~-~~~~~l~~ii~~~~~~~~~~~~~i~nna~g~ 79 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPE-FANLPVEELITKLDQLPADKKTVLRNNAGGH 79 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHH-hhcCCHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999998753 566788887632 11266899999
Q ss_pred hhHHHHHHhhcCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCC--
Q psy16344 92 INHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFET-- 168 (218)
Q Consensus 92 ~NH~~f~~~L~p~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~-- 168 (218)
+||+|||+||+|+ ++|++.|+++|+++|||+|+||++|+++|.++|||||||||+|+ ++|.|++|+|++ |++..
T Consensus 80 ~NH~~fw~~L~P~-~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~~--~~L~i~~t~N~~~p~~~~~~ 156 (206)
T PRK10925 80 ANHSLFWKGLKKG-TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG--DKLAVVSTANQDSPLMGEAI 156 (206)
T ss_pred HHHHHHHhccCCC-CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEeC--CEEEEEeccCCCCCcccccc
Confidence 9999999999994 58999999999999999999999999999999999999999984 799999999999 98421
Q ss_pred --CCCeeeeeeccCchhhHhhhcCChHHHHHHHhcCCChHHHHHHHHHH
Q psy16344 169 --TGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKA 215 (218)
Q Consensus 169 --~~~~PLL~iDvWEHAYyldY~n~r~~Yi~~~w~~InW~~V~~r~~~a 215 (218)
.+.+|||||||||||||+||||+|++||++||++|||++|++||.++
T Consensus 157 ~~~~~~PlL~iDvWEHAYyldY~n~R~~Yv~~~w~~inW~~v~~r~~~~ 205 (206)
T PRK10925 157 SGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAK 205 (206)
T ss_pred ccCCCceeEEEechHHHhHHHHccCHHHHHHHHHhccCHHHHHHHHHhc
Confidence 13589999999999999999999999999999999999999999875
No 5
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=7.2e-76 Score=505.19 Aligned_cols=197 Identities=57% Similarity=1.006 Sum_probs=179.2
Q ss_pred ccceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhcCccccccchhhhhHHHHH
Q psy16344 19 QGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFW 98 (218)
Q Consensus 19 ~~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~~~~NH~~f~ 98 (218)
.+.|+||+|||++++|||+||++||++||+|||++||++||++++++++..+..++++++..++.+.||+|||+||+|||
T Consensus 28 ~~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~~~~~~~n~gg~~NH~~fw 107 (231)
T PLN02471 28 LQTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKLQSAIKFNGGGHVNHSIFW 107 (231)
T ss_pred cccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhhhhhhhhHHHHHHhHHHHH
Confidence 36799999999999999999999999999999999999999999987544456677788777778999999999999999
Q ss_pred HhhcCC--C-CC-CcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCCCCee
Q psy16344 99 KMLNKN--G-GK-PSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKP 173 (218)
Q Consensus 99 ~~L~p~--~-~~-p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~~~~P 173 (218)
+||+|. + +. |++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+.+++|.|++|+|+| |+....+.+|
T Consensus 108 ~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~~~~~L~i~~t~n~d~~~~~~~~~~P 187 (231)
T PLN02471 108 KNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDKELKKLVVETTANQDPLVTKGPSLVP 187 (231)
T ss_pred hccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeCCCCeEEEEeecCCCCCcccCCCCce
Confidence 999985 2 34 67999999999999999999999999999999999999999877999999999999 6521123689
Q ss_pred eeeeccCchhhHhhhcCChHHHHHHHhcCCChHHHHHHHHHH
Q psy16344 174 LFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKA 215 (218)
Q Consensus 174 LL~iDvWEHAYyldY~n~r~~Yi~~~w~~InW~~V~~r~~~a 215 (218)
||||||||||||+||||+|++||++||++|||++|++||+++
T Consensus 188 iL~iDvWEHAYylDY~n~R~~Yi~~~w~~inW~~v~~r~~~~ 229 (231)
T PLN02471 188 LLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYEKE 229 (231)
T ss_pred EEEeechhhHhHHHhccCHHHHHHHHHHccCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999875
No 6
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=1.1e-73 Score=480.79 Aligned_cols=188 Identities=35% Similarity=0.713 Sum_probs=173.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhc-CccccccchhhhhHHHHHHhhcC
Q psy16344 25 PKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQL-GPALKFNGGGHINHALFWKMLNK 103 (218)
Q Consensus 25 p~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~-~~~~~~n~~~~~NH~~f~~~L~p 103 (218)
|||||+|++|||+||++||++||++||++||++||+++++++ .+..++++++.. ...+.||+||++||+|||+||+|
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~--~~~~~~~~ii~~~~~~~~n~a~g~~NH~lfw~~L~p 78 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTP--LENKTLEELIKEYSGAVFNNAAQIWNHNFYWLSMGP 78 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999874 566788888754 34577888899999999999999
Q ss_pred CC-CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCC-CCeeeeeeccC
Q psy16344 104 NG-GKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETT-GLKPLFGIDVW 180 (218)
Q Consensus 104 ~~-~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~-~~~PLL~iDvW 180 (218)
.+ ++|++.|+++|+++|||+|+||++|+++|.++|||||||||.+. +|+|.|++|+|++ |+ +. +.+||||||||
T Consensus 79 ~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~~-~~~L~i~~t~n~~~p~--~~~~~~PlL~lDvW 155 (193)
T PTZ00078 79 NGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLKN-DGKLEIVQTHDAGNPI--KDNTGKPLLTCDIW 155 (193)
T ss_pred CCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCcEEEEeccCCCCCc--cCCCCceEEEeccc
Confidence 76 58999999999999999999999999999999999999999854 6899999999999 98 43 36899999999
Q ss_pred chhhHhhhcCChHHHHHHHhcCCChHHHHHHHHHHhc
Q psy16344 181 EHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKS 217 (218)
Q Consensus 181 EHAYyldY~n~r~~Yi~~~w~~InW~~V~~r~~~a~~ 217 (218)
|||||+||||+|++||++||++|||++|++||.++++
T Consensus 156 EHAYyldY~n~r~~Yi~~~w~~inW~~v~~r~~~~~~ 192 (193)
T PTZ00078 156 EHAYYIDYRNDRASYVNSWWNKVNWDFANKNLKKLMQ 192 (193)
T ss_pred hhhhHHHHccCHHHHHHHHHHccCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999875
No 7
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=1.5e-73 Score=498.03 Aligned_cols=196 Identities=31% Similarity=0.574 Sum_probs=178.8
Q ss_pred cccceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhc------Cccccccchhh
Q psy16344 18 LQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQL------GPALKFNGGGH 91 (218)
Q Consensus 18 ~~~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~------~~~~~~n~~~~ 91 (218)
..+.|+||+|||++++|||+||++||++||+|||++||++||+++++++ ..+..++++++.. ...+.+|+|||
T Consensus 44 ~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~~-~~~~~~l~~li~~~~~~~~~~~vfnna~g~ 122 (261)
T PLN02622 44 VVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDD-ILYGYTMDELVKVTYNNGNPLPEFNNAAQV 122 (261)
T ss_pred ccccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCch-hhhcCCHHHHHHHhhccchhHHHHHHHHhH
Confidence 3467999999999999999999999999999999999999999998874 3456777777542 12367778899
Q ss_pred hhHHHHHHhhcCCCC-CCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCC
Q psy16344 92 INHALFWKMLNKNGG-KPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETT 169 (218)
Q Consensus 92 ~NH~~f~~~L~p~~~-~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~ 169 (218)
+||+|||+||+|.++ +|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+.+|+|+|++|+|++ |+ ..
T Consensus 123 ~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~~~g~L~I~~t~N~~~Pl--~~ 200 (261)
T PLN02622 123 WNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKREERRLEVVKTSNAINPL--VW 200 (261)
T ss_pred HHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEecCCCCCCc--cC
Confidence 999999999999874 799999999999999999999999999999999999999999888999999999999 98 67
Q ss_pred CCeeeeeeccCchhhHhhhcCChHHHHHHHhc-CCChHHHHHHHHHHh
Q psy16344 170 GLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYD-IMNWNYINELYAKAK 216 (218)
Q Consensus 170 ~~~PLL~iDvWEHAYyldY~n~r~~Yi~~~w~-~InW~~V~~r~~~a~ 216 (218)
+.+|||||||||||||+||||+|++||++||+ +|||++|++||.+|.
T Consensus 201 ~~~PLL~lDvWEHAYYlDY~N~R~~Yv~~~w~~iInW~~v~~R~~~~~ 248 (261)
T PLN02622 201 DDIPIICLDVWEHAYYLDYKNDRGKYVNAFMNHLVSWNAAMARMARAE 248 (261)
T ss_pred CCEeEEEEechhhhhHHhhccChHHHHHHHHHcccCHHHHHHHHHHhh
Confidence 88999999999999999999999999999998 699999999998874
No 8
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=6.5e-73 Score=500.53 Aligned_cols=195 Identities=33% Similarity=0.673 Sum_probs=177.1
Q ss_pred cccceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhcC------ccccccchhh
Q psy16344 18 LQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLG------PALKFNGGGH 91 (218)
Q Consensus 18 ~~~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~~------~~~~~n~~~~ 91 (218)
..+.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ ++..++++++... ..+.||+|||
T Consensus 43 ~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~t~--l~~~sl~eii~~~~~~~~~~~ifNnaggh 120 (299)
T PLN02685 43 ITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTE--LDGMSLEDVVLITYNKGDMLPAFNNAAQA 120 (299)
T ss_pred cccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcCch--hhcCCHHHHHHHhhccchhHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999998863 5667888876321 1256677889
Q ss_pred hhHHHHHHhhcCCC-CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeC---------------CCCeeE
Q psy16344 92 INHALFWKMLNKNG-GKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDP---------------KSKSLK 155 (218)
Q Consensus 92 ~NH~~f~~~L~p~~-~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~---------------~~~~L~ 155 (218)
+||+|||+||+|.+ ++|++.|+++|+++|||||+||++|+++|.++|||||+|||+++ .+++|.
T Consensus 121 ~NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~~~~~~~~~~np~~~~~~~~L~ 200 (299)
T PLN02685 121 WNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKANRLDVGNAVNPCPSEEDKKLV 200 (299)
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEccccccccccccccccccCCcee
Confidence 99999999999976 58999999999999999999999999999999999999999975 257999
Q ss_pred EEeecCCC-CCCCCCCCeeeeeeccCchhhHhhhcCChHHHHHHHhc-CCChHHHHHHHHHHh
Q psy16344 156 IATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYD-IMNWNYINELYAKAK 216 (218)
Q Consensus 156 i~~t~n~~-p~~~~~~~~PLL~iDvWEHAYyldY~n~r~~Yi~~~w~-~InW~~V~~r~~~a~ 216 (218)
|++|.|++ |+ ..+.+|||||||||||||+||||+|++||++||+ +|||++|++||.+|+
T Consensus 201 i~~t~n~d~pl--~~~~~PLL~iDVWEHAYYlDY~N~Ra~Yv~afw~~vINW~~V~~R~~~a~ 261 (299)
T PLN02685 201 VVKSPNAVNPL--VWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAK 261 (299)
T ss_pred EEeccCCCCCc--cCCCEeEEEEecchhhhHHHhccChHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 99999999 98 6788999999999999999999999999999998 799999999998875
No 9
>KOG0876|consensus
Probab=100.00 E-value=8.2e-71 Score=468.13 Aligned_cols=199 Identities=52% Similarity=0.898 Sum_probs=177.7
Q ss_pred cccceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHH----HHhcCccccccchhhh-
Q psy16344 18 LQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASA----IVQLGPALKFNGGGHI- 92 (218)
Q Consensus 18 ~~~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~----~~~~~~~~~~n~~~~~- 92 (218)
.+..++||+|||+|++|||.||+++|++||+|||++||++||++++++.+ .......+ .+...+..+||+|||+
T Consensus 24 v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~-~~~~~~~~~~~t~~~~~~a~~Fn~~~~~~ 102 (234)
T KOG0876|consen 24 VRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSE-LYSKLFVELSLTAIAPQPAPKFNGAGHIY 102 (234)
T ss_pred eeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccchhhhhHhccChhhhhhcCCccccc
Confidence 56789999999999999999999999999999999999999999999853 23333333 2345667999999998
Q ss_pred hHHHHHHhhcCCC-CCCcHH-HHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCC-CCCCCCC
Q psy16344 93 NHALFWKMLNKNG-GKPSDD-LSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQ-DPLFETT 169 (218)
Q Consensus 93 NH~~f~~~L~p~~-~~p~~~-L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~-~p~~~~~ 169 (218)
||+|||++|.|++ ++|.+. |.++|+++|||+|+|+++|.+++.++|||||+|||+++..++|.|++|+|| ||+..+.
T Consensus 103 Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i~~T~Na~~P~~~~t 182 (234)
T KOG0876|consen 103 NHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFILTTYNAGDPLVWTT 182 (234)
T ss_pred cchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEEecCCCCCCeeccC
Confidence 9999999999987 478776 999999999999999999999999999999999999997789999999999 5983322
Q ss_pred C-CeeeeeeccCchhhHhhhcCChHHHHHHHhcCCChHHHHHHHHHHhc
Q psy16344 170 G-LKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKS 217 (218)
Q Consensus 170 ~-~~PLL~iDvWEHAYyldY~n~r~~Yi~~~w~~InW~~V~~r~~~a~~ 217 (218)
+ .+|||||||||||||+||||+|++||++||++|||++|++||+++.+
T Consensus 183 ~~~vPLl~IDvWeHAYyldY~n~R~~Yi~~~wd~inW~~v~~R~~~~k~ 231 (234)
T KOG0876|consen 183 GQLVPLLGIDVWEHAYYLDYGNVRAEYIKAIWDVINWKVVSERFEAAKI 231 (234)
T ss_pred CCccceEEEecchhHhHHHhccchHHHHHHHHHHhcHHHHHHHHHHhhh
Confidence 3 89999999999999999999999999999999999999999997754
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=100.00 E-value=5.8e-48 Score=295.93 Aligned_cols=105 Identities=51% Similarity=1.008 Sum_probs=100.3
Q ss_pred CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCCCCeeeeeeccCchhh
Q psy16344 106 GKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAY 184 (218)
Q Consensus 106 ~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~~~~PLL~iDvWEHAY 184 (218)
|+|++.|+++|+++|||+|+||++|.++|.++|||||+|||+|+.+++|.|++|.|++ |+ ..+.+||||||||||||
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~n~~~p~--~~~~~Pll~iD~weHaY 78 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDPSDGKLSIISTPNHDTPI--IWGLIPLLCIDVWEHAY 78 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTTEEEEEEEETTTBGG--GGTEEEEEEEE-SGGGT
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeeccccceeeeeeeccccccc--chhhccchhhhhhHHHH
Confidence 5799999999999999999999999999999999999999999888999999999999 98 67899999999999999
Q ss_pred HhhhcCChHHHHHHHhcCCChHHHHHHH
Q psy16344 185 YLQYKNVRPNYVKAIYDIMNWNYINELY 212 (218)
Q Consensus 185 yldY~n~r~~Yi~~~w~~InW~~V~~r~ 212 (218)
|+||||+|++||++||++|||++|++||
T Consensus 79 ~~dy~~~r~~Yv~~~~~~inW~~v~~r~ 106 (106)
T PF02777_consen 79 YLDYGNKRADYVEAFWNVINWEVVEKRY 106 (106)
T ss_dssp HHHHTTHHHHHHHHHGGGBBHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHcCHHHHHhhC
Confidence 9999999999999999999999999998
No 11
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.96 E-value=1e-30 Score=192.20 Aligned_cols=80 Identities=51% Similarity=0.872 Sum_probs=66.8
Q ss_pred ceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHH--hcCccccccchhhhhHHHHH
Q psy16344 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV--QLGPALKFNGGGHINHALFW 98 (218)
Q Consensus 21 ~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~--~~~~~~~~n~~~~~NH~~f~ 98 (218)
.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ .+..++++++ ..+++++||+||++||+|||
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~--~~~~~~~~~~~~~~~~~~~nn~gg~~NH~~fw 78 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTE--LEGKSLEEIISNALRAALRNNAGGHYNHSFFW 78 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCH--HHTSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc--cccccchhhhhhhhhHHHHHHcchhhhHHHHH
Confidence 4899999999999999999999999999999999999999999983 5677888876 46678999999999999999
Q ss_pred Hhhc
Q psy16344 99 KMLN 102 (218)
Q Consensus 99 ~~L~ 102 (218)
+||+
T Consensus 79 ~~ls 82 (82)
T PF00081_consen 79 ENLS 82 (82)
T ss_dssp HTB-
T ss_pred HHcC
Confidence 9995
No 12
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=50.81 E-value=19 Score=24.55 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=15.5
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q psy16344 111 DLSNAIKASFGSLDKLKDE 129 (218)
Q Consensus 111 ~L~~~I~~~FGS~d~fk~~ 129 (218)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 3567899999999999844
No 13
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=38.63 E-value=30 Score=29.88 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHh
Q psy16344 44 ELHHSKHHQTYVTNYNAALEKL 65 (218)
Q Consensus 44 ~~H~~khh~~Yv~~LN~~~~~~ 65 (218)
.-||.|||++.++..|..+++.
T Consensus 227 ~~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 227 RPHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHhh
Confidence 3599999999999999988764
No 14
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=35.60 E-value=33 Score=25.17 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHH
Q psy16344 36 PVINSEIMELHHSKHHQTYVTNY 58 (218)
Q Consensus 36 p~iS~~tl~~H~~khh~~Yv~~L 58 (218)
| +|.++++.||..+|...+.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 5 899999999999999888765
No 15
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=30.64 E-value=70 Score=19.50 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHH
Q psy16344 110 DDLSNAIKASFGSLDKLKDELTAAS 134 (218)
Q Consensus 110 ~~L~~~I~~~FGS~d~fk~~f~~~a 134 (218)
+.+..+|.+-|-.+.+.+++|.+++
T Consensus 7 ~kilrsiak~fkgvgk~rkqfk~as 31 (37)
T PF08025_consen 7 SKILRSIAKFFKGVGKVRKQFKEAS 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4678899999999999999999875
No 16
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=29.40 E-value=78 Score=30.37 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHH--hcCccce
Q psy16344 110 DDLSNAIKASFGSLDKLKDELTAAS--VGIQGSG 141 (218)
Q Consensus 110 ~~L~~~I~~~FGS~d~fk~~f~~~a--~~~fGsG 141 (218)
+.|++-|+..|||+++++.....-. .+.-|||
T Consensus 381 ~~l~~yi~~~~g~~~~l~~~IL~DfFrh~FDGSG 414 (458)
T PF09418_consen 381 PHLRNYIESEFGSVEELKKTILQDFFRHAFDGSG 414 (458)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 5678889999999999998776544 2233887
No 17
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=27.51 E-value=1.9e+02 Score=19.25 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=29.3
Q ss_pred hcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEE
Q psy16344 119 SFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKI 156 (218)
Q Consensus 119 ~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i 156 (218)
.|||.+...+++.+.|...-++.|...-.+..++++.+
T Consensus 13 ~~~s~~d~~~~la~kAd~~GA~~y~I~~~~~~~~~~~~ 50 (56)
T PF07338_consen 13 NFGSPDDAEEALAKKADEKGAKYYRITSASEDGNNWHA 50 (56)
T ss_dssp ECSSHHHHHHHHHHHHHHTT-SEEEEEEEEECSSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEEEEcCCCeEEE
Confidence 46899999999999999888888888777653355554
No 18
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=27.18 E-value=64 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHH
Q psy16344 36 PVINSEIMELHHSKHHQTYVTNY 58 (218)
Q Consensus 36 p~iS~~tl~~H~~khh~~Yv~~L 58 (218)
|.||.+.+.-||...|...|..+
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~~ 23 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKRL 23 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHHh
Confidence 67999999999999898887543
No 19
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=26.69 E-value=42 Score=32.15 Aligned_cols=48 Identities=27% Similarity=0.354 Sum_probs=26.3
Q ss_pred CccceEEEEEEeCCCCeeEEEeecCCCCCCCC-CCCeeeeeeccCchhhHhhhc
Q psy16344 137 IQGSGWGWLGYDPKSKSLKIATTANQDPLFET-TGLKPLFGIDVWEHAYYLQYK 189 (218)
Q Consensus 137 ~fGsGWvWLv~~~~~~~L~i~~t~n~~p~~~~-~~~~PLL~iDvWEHAYyldY~ 189 (218)
.|||||.+-|. ..|.|.+|.=- |-... .-..||=-|-|+.+.=+..|+
T Consensus 377 ~fGsGWGfWVS----~~lfITttHVi-P~g~~E~FGv~i~~i~vh~sGeF~~~r 425 (535)
T PF05416_consen 377 KFGSGWGFWVS----PTLFITTTHVI-PPGAKEAFGVPISQIQVHKSGEFCRFR 425 (535)
T ss_dssp EETTEEEEESS----SSEEEEEGGGS--STTSEETTEECGGEEEEEETTEEEEE
T ss_pred ecCCceeeeec----ceEEEEeeeec-CCcchhhhCCChhHeEEeeccceEEEe
Confidence 49999998873 46878777321 22100 013555555555555444444
No 20
>KOG0394|consensus
Probab=21.80 E-value=59 Score=27.84 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=17.4
Q ss_pred HhhcCCHHHHHHHHHHHHh
Q psy16344 117 KASFGSLDKLKDELTAASV 135 (218)
Q Consensus 117 ~~~FGS~d~fk~~f~~~a~ 135 (218)
-++|++.++|+++|...|.
T Consensus 94 ~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 94 PKSFENLENWRKEFLIQAS 112 (210)
T ss_pred hhhhccHHHHHHHHHHhcC
Confidence 4799999999999999986
No 21
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=21.11 E-value=74 Score=21.62 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=19.2
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Q psy16344 109 SDDLSNAIKASFGSLDKLKDELTAASVGIQG 139 (218)
Q Consensus 109 ~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fG 139 (218)
...-++.|-+.|||+|++.+.=.+.-..+-|
T Consensus 12 G~~~ak~L~~~f~sl~~l~~a~~e~L~~i~g 42 (64)
T PF12826_consen 12 GEKTAKLLAKHFGSLEALMNASVEELSAIPG 42 (64)
T ss_dssp -HHHHHHHHHCCSCHHHHCC--HHHHCTSTT
T ss_pred cHHHHHHHHHHcCCHHHHHHcCHHHHhccCC
Confidence 4566788889999999987554433333333
Done!