RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16344
(218 letters)
>gnl|CDD|223678 COG0605, SodA, Superoxide dismutase [Inorganic ion transport and
metabolism].
Length = 204
Score = 251 bits (644), Expect = 1e-85
Identities = 102/203 (50%), Positives = 128/203 (63%), Gaps = 8/203 (3%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-- 78
ELP+L Y Y LEP I++E MELHH KHHQTYV N NAALE L + + I+
Sbjct: 3 AYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKK 62
Query: 79 --QLGPALKFNGGGHINHALFWKML--NKNGGKPSDDLSNAIKASFGSLDKLKDELTAAS 134
L AL N GGH NH+LFW+ L GGKP+ +L+ AI FGS DK K+E TAA+
Sbjct: 63 LAGLPAALFNNAGGHWNHSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAA 122
Query: 135 VGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPN 194
+ GSGW WL YDP K L+I +T NQD G PL G+DVWEHAYYL Y N RP+
Sbjct: 123 ASVFGSGWAWLVYDPDGK-LEIVSTYNQDTPL-MWGSVPLLGLDVWEHAYYLDYGNRRPD 180
Query: 195 YVKAIYDIMNWNYINELYAKAKS 217
YV+A ++++NW+ + E + AK
Sbjct: 181 YVEAFWNVVNWDEVEERFEAAKK 203
>gnl|CDD|215262 PLN02471, PLN02471, superoxide dismutase [Mn].
Length = 231
Score = 245 bits (628), Expect = 6e-83
Identities = 114/199 (57%), Positives = 140/199 (70%), Gaps = 5/199 (2%)
Query: 24 LPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPA 83
LP L Y Y LEP I+ EIM+LHH KHHQTYVTNYN ALE+L AV DASA+V+L A
Sbjct: 33 LPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKLQSA 92
Query: 84 LKFNGGGHINHALFWKML---NKNGGK-PSDDLSNAIKASFGSLDKLKDELTAASVGIQG 139
+KFNGGGH+NH++FWK L ++ GG+ P L AI FGSL+ L +++A +QG
Sbjct: 93 IKFNGGGHVNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQG 152
Query: 140 SGWGWLGYDPKSKSLKIATTANQDPLFETTG-LKPLFGIDVWEHAYYLQYKNVRPNYVKA 198
SGW WLG D + K L + TTANQDPL L PL GIDVWEHAYYLQYKNVRP+Y+K
Sbjct: 153 SGWVWLGLDKELKKLVVETTANQDPLVTKGPSLVPLLGIDVWEHAYYLQYKNVRPDYLKN 212
Query: 199 IYDIMNWNYINELYAKAKS 217
I+ +MNW Y +E+Y K +
Sbjct: 213 IWKVMNWKYASEVYEKECN 231
>gnl|CDD|182843 PRK10925, PRK10925, superoxide dismutase; Provisional.
Length = 206
Score = 168 bits (427), Expect = 7e-53
Identities = 91/205 (44%), Positives = 117/205 (57%), Gaps = 15/205 (7%)
Query: 24 LPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLG-- 81
LP L Y Y LEP + + ME+HH+KHHQTYV N NAALE L I +L
Sbjct: 5 LPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQL 64
Query: 82 PA-----LKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVG 136
PA L+ N GGH NH+LFWK L K G DL AI+ FGS+D K E A+
Sbjct: 65 PADKKTVLRNNAGGHANHSLFWKGL-KKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAAT 123
Query: 137 IQGSGWGWLGYDPKSKSLKIATTANQD-PLF--ETTGLK--PLFGIDVWEHAYYLQYKNV 191
GSGW WL K L + +TANQD PL +G P+ G+DVWEHAYYL+++N
Sbjct: 124 RFGSGWAWLVL--KGDKLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNR 181
Query: 192 RPNYVKAIYDIMNWNYINELYAKAK 216
RP+Y+K ++++NW+ +A K
Sbjct: 182 RPDYIKEFWNVVNWDEAAARFAAKK 206
>gnl|CDD|202388 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases,
C-terminal domain. superoxide dismutases (SODs)
catalyze the conversion of superoxide radicals to
hydrogen peroxide and molecular oxygen. Three
evolutionarily distinct families of SODs are known, of
which the Mn/Fe-binding family is one. In humans, there
is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe
SOD. C-terminal domain is a mixed alpha/beta fold.
Length = 106
Score = 157 bits (399), Expect = 8e-50
Identities = 54/107 (50%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 106 GKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPL 165
G+P+ +L+ AI FGS D+ K+E TAA+ G+ GSGW WL YDP++ L+I +T NQD
Sbjct: 1 GEPTGELAEAIDEDFGSFDEFKEEFTAAAAGLFGSGWAWLVYDPENGKLRIVSTPNQDNP 60
Query: 166 FETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELY 212
TTGL PL +DVWEHAYYL Y+N RP+Y++A ++++NW+ + + Y
Sbjct: 61 -LTTGLTPLLTLDVWEHAYYLDYQNRRPDYLEAFWNVVNWDEVAKRY 106
>gnl|CDD|182534 PRK10543, PRK10543, superoxide dismutase; Provisional.
Length = 193
Score = 138 bits (350), Expect = 2e-41
Identities = 77/194 (39%), Positives = 107/194 (55%), Gaps = 8/194 (4%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
ELP L Y L P I++E +E H+ KHHQTYVTN N ++ A IV+
Sbjct: 4 ELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIVRSSE 61
Query: 83 ALKFNGGGHI-NHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGS 140
FN + NH +W L N GG+P+ ++ AI ASFGS K + T A++ GS
Sbjct: 62 GGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGS 121
Query: 141 GWGWLGYDPKSKSLKIATTANQ-DPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAI 199
GW WL + K L I +T+N PL TT PL +DVWEHAYY+ Y+N RP Y++
Sbjct: 122 GWTWLVKNADGK-LAIVSTSNAGTPL--TTDATPLLTVDVWEHAYYIDYRNARPGYLEHF 178
Query: 200 YDIMNWNYINELYA 213
+ ++NW ++ + A
Sbjct: 179 WALVNWEFVAKNLA 192
>gnl|CDD|185432 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Provisional.
Length = 193
Score = 129 bits (325), Expect = 1e-37
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 5/188 (2%)
Query: 25 PKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPAL 84
PKL YG K+L P ++ E ++ H+SKHH YV N ++ + N +++
Sbjct: 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKG--TPLENKTLEELIKEYSGA 58
Query: 85 KFNGGGHI-NHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGW 142
FN I NH +W + N GG+P+ ++ I FGS D K+E + G GSGW
Sbjct: 59 VFNNAAQIWNHNFYWLSMGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGW 118
Query: 143 GWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDI 202
GWL K + T +P+ + TG KPL D+WEHAYY+ Y+N R +YV + ++
Sbjct: 119 GWLVLKNDGKLEIVQTHDAGNPIKDNTG-KPLLTCDIWEHAYYIDYRNDRASYVNSWWNK 177
Query: 203 MNWNYINE 210
+NW++ N+
Sbjct: 178 VNWDFANK 185
>gnl|CDD|200985 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases,
alpha-hairpin domain. superoxide dismutases (SODs)
catalyze the conversion of superoxide radicals to
hydrogen peroxide and molecular oxygen. Three
evolutionarily distinct families of SODs are known, of
which the Mn/Fe-binding family is one. In humans, there
is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe
SOD. N-terminal domain is a long alpha antiparallel
hairpin. A small fragment of YTRE_LEPBI matches well -
sequencing error?.
Length = 82
Score = 112 bits (282), Expect = 2e-32
Identities = 43/79 (54%), Positives = 49/79 (62%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
ELP L Y Y LEP I+ E ME+HH KHHQTYV N NAALE L+ A + +
Sbjct: 3 ELPDLPYDYDALEPHISKETMEIHHGKHHQTYVNNLNAALEGLEEARKKLEEIILKASLG 62
Query: 83 ALKFNGGGHINHALFWKML 101
AL NGGGH NH+ FWK L
Sbjct: 63 ALFNNGGGHWNHSFFWKNL 81
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase.
Length = 299
Score = 108 bits (272), Expect = 9e-29
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 28/232 (12%)
Query: 10 RKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAV 69
+ S ++ EL Y LEP ++ E +E H KHH+ YV N N + +
Sbjct: 35 TRKAVSGVITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTELDG 94
Query: 70 ANNDASAIV-----QLGPALKFNGGGHI-NHALFWK-MLNKNGGKPSDDLSNAIKASFGS 122
+ + ++ + PA FN NH FW+ M GGKPS +L I+ FGS
Sbjct: 95 MSLEDVVLITYNKGDMLPA--FNNAAQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGS 152
Query: 123 LDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGL----------- 171
++ +E +A+ GSGW WL Y K+ L + N P E L
Sbjct: 153 FERFVEEFKSAAATQFGSGWAWLAY--KANRLDVGNAVNPCPSEEDKKLVVVKSPNAVNP 210
Query: 172 -----KPLFGIDVWEHAYYLQYKNVRPNYVKAIYD-IMNWNYINELYAKAKS 217
PL IDVWEHAYYL ++N RP+Y+ + +++W ++ AK+
Sbjct: 211 LVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAKA 262
>gnl|CDD|177838 PLN02184, PLN02184, superoxide dismutase [Fe].
Length = 212
Score = 102 bits (254), Expect = 6e-27
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 23/203 (11%)
Query: 29 YGYKDLEPVINSEIMELHHSKHHQTYVTNYNAA----------LEKLKAAVANNDASAIV 78
+ LEP ++ + +E H KHH+ YV N LE + + NN
Sbjct: 18 FALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNG----- 72
Query: 79 QLGPALKFNGGGHINHALFWK-MLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGI 137
L PA N NH FW+ M GGKPS +L ++ F S +K +E AA+
Sbjct: 73 DLLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQ 131
Query: 138 QGSGWGWLGYDPKSKSLKIATTANQ-DPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYV 196
G+GW WL Y ++ LK+ T N +PL G PL IDVWEHAYYL ++N RP+Y+
Sbjct: 132 FGAGWAWLAY--SNEKLKVVKTPNAVNPL--VLGSFPLLTIDVWEHAYYLDFQNRRPDYI 187
Query: 197 KA-IYDIMNWNYINELYAKAKSS 218
K + ++++W ++ AK++
Sbjct: 188 KTFMTNLVSWEAVSARLEAAKAA 210
>gnl|CDD|166263 PLN02622, PLN02622, iron superoxide dismutase.
Length = 261
Score = 100 bits (250), Expect = 7e-26
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 24/204 (11%)
Query: 29 YGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEK-----------LKAAVANNDASAI 77
Y LEP ++ +E+H +HH+ YV N L K L NN
Sbjct: 55 YPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTYNNG---- 110
Query: 78 VQLGPALKFNGGGHI-NHALFWKMLNKNGGK-PSDDLSNAIKASFGSLDKLKDELTAASV 135
P +FN + NH FW+ + GG P + I+ FGS +++ T A++
Sbjct: 111 ---NPLPEFNNAAQVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAAL 167
Query: 136 GIQGSGWGWLGYDPKSKSLKIATTANQ-DPLFETTGLKPLFGIDVWEHAYYLQYKNVRPN 194
+ GSGW WL + + L++ T+N +PL P+ +DVWEHAYYL YKN R
Sbjct: 168 TLFGSGWVWLVLKREERRLEVVKTSNAINPL--VWDDIPIICLDVWEHAYYLDYKNDRGK 225
Query: 195 YVKAIYD-IMNWNYINELYAKAKS 217
YV A + +++WN A+A++
Sbjct: 226 YVNAFMNHLVSWNAAMARMARAEA 249
>gnl|CDD|236986 PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.
Length = 273
Score = 30.5 bits (70), Expect = 0.49
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 147 YDPKSKSL--KIATTANQDPLFETTGLKPLFGIDVWEHAYYL 186
YDP SL I + N+D L T L P G+D+W AY L
Sbjct: 17 YDP---SLLFPIPRSLNRDELGLTADLLPFHGVDIW-TAYEL 54
>gnl|CDD|225862 COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism].
Length = 441
Score = 30.1 bits (68), Expect = 0.82
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 113 SNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGY 147
S+ +K FG+L LK I GW G
Sbjct: 107 SDPLKGHFGALFDLKATYPDLKTLISIGGWSDSGG 141
>gnl|CDD|225456 COG2904, COG2904, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 137
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 147 YDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVR 192
YDP S + + N+DPL T P G D+W Y L + N +
Sbjct: 24 YDP-SLLQPVPRSLNRDPLGLTANNLPFHGADIW-TLYELSWLNAK 67
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 28.0 bits (62), Expect = 3.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 167 ETTGLKPLFGIDVWEHAYYLQYKNVRPNYVK 197
E G +P I+V++ YYL+ K +RP+ VK
Sbjct: 163 EVEGKQPNEIIEVFQKGYYLKDKVIRPSLVK 193
>gnl|CDD|163639 cd07396, MPP_Nbla03831, Homo sapiens Nbla03831 and related
proteins, metallophosphatase domain. Nbla03831 (also
known as LOC56985) is an uncharacterized Homo sapiens
protein with a domain that belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 267
Score = 28.0 bits (63), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 57 NYNAALEKLKAAVA---NNDASAIVQLG 81
Y +LEKL+ AV +VQLG
Sbjct: 21 YYRNSLEKLEEAVEEWNRESLDFVVQLG 48
>gnl|CDD|199836 cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF).
Methanol dehydrogenase is a key enzyme in the
utilization of C1 compounds as a source of energy and
carbon by bacteria. It catalyzes the oxidation of
methanol to formaldehyde, transfering two electrons per
methanol to cytochrome c(L) as the acceptor. Methanol
dehydrogenase belongs to a family of dehydrogenases with
pyrroloquinoline quinone (PQQ) as cofactor, which also
includes dehydrogenases specific to other alcohols and
membrane-bound glucose dehydrogenases. This alignment
model for the large subunit contains an 8-bladed
beta-propeller; the functional enzyme forms a
heterotetramer composed of two large and two small
subunits.
Length = 553
Score = 27.7 bits (62), Expect = 5.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 139 GSGWGWLGYDPK 150
G+ WGW YDPK
Sbjct: 221 GTNWGWYSYDPK 232
>gnl|CDD|222978 PHA03091, PHA03091, putative alpha aminitin-sensitive protein;
Provisional.
Length = 232
Score = 27.2 bits (60), Expect = 6.1
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 184 YYLQYKNVRPNYVKAIYDIMNWNYINEL 211
Q K + Y++ IYD ++ E
Sbjct: 2 TSSQKKKLETKYIECIYDATEKKFVTEF 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,968,857
Number of extensions: 998655
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 21
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.7 bits)