RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16344
(218 letters)
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A
{Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A
1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A
3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A*
1zsp_A 1n0n_A 2p4k_A ...
Length = 198
Score = 332 bits (854), Expect = e-118
Identities = 116/195 (59%), Positives = 143/195 (73%), Gaps = 1/195 (0%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
LP L Y Y LEP IN++IM+LHHSKHH YV N N EK + A+A D +A + L P
Sbjct: 3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 62
Query: 83 ALKFNGGGHINHALFWKMLNKNGG-KPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSG 141
ALKFNGGGHINH++FW L+ NGG +P +L AIK FGS DK K++LTAASVG+QGSG
Sbjct: 63 ALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSG 122
Query: 142 WGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYD 201
WGWLG++ + L+IA NQDPL TTGL PL GIDVWEHAY+LQYKNVRP+Y+KAI++
Sbjct: 123 WGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYFLQYKNVRPDYLKAIWN 182
Query: 202 IMNWNYINELYAKAK 216
++NW + E Y K
Sbjct: 183 VINWENVTERYMACK 197
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C
domain, oxidoreductase, manganese, metal-binding,
mitochondrion; 1.70A {Caenorhabditis elegans} PDB:
3dc6_A
Length = 195
Score = 331 bits (852), Expect = e-117
Identities = 117/194 (60%), Positives = 140/194 (72%), Gaps = 3/194 (1%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
LP L + Y DLEPVI+ EIM+LHH KHH TYV N N EKL AV+ + + L P
Sbjct: 4 TLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQP 63
Query: 83 ALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGW 142
ALKFNGGGHINH++FW L K+GG+PS +L + IK FGSLD L+ L+ ++ +QGSGW
Sbjct: 64 ALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGW 123
Query: 143 GWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDI 202
GWLGY K K LKIAT ANQDPL G+ PLFGIDVWEHAYYLQYKNVRP+YV AI+ I
Sbjct: 124 GWLGYCKKDKILKIATCANQDPL---EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKI 180
Query: 203 MNWNYINELYAKAK 216
NW I+E +A A+
Sbjct: 181 ANWKNISERFANAR 194
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.2.11.1 d.44.1.1
PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A
Length = 201
Score = 325 bits (835), Expect = e-115
Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 4/202 (1%)
Query: 20 GPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQ 79
LP+L Y Y LEP I+ EIMELHH KHH+ YV N AL+KL A D AI +
Sbjct: 1 AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINK 60
Query: 80 LGPALKFNGGGHINHALFWKMLNKNGG---KPSDDLSNAIKASFGSLDKLKDELTAASVG 136
L L FN GH+NH++FWK + G +P+D+L AI FGS D +K + TAA+ G
Sbjct: 61 LEKDLAFNLAGHVNHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATG 120
Query: 137 IQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYV 196
IQGSGW L +DP K + + G PL +D+WEHA+YLQYKNV+ +YV
Sbjct: 121 IQGSGWASLVWDPLGKRINTLQFYDHQNNL-PAGSIPLLQLDMWEHAFYLQYKNVKGDYV 179
Query: 197 KAIYDIMNWNYINELYAKAKSS 218
K+ ++++NW+ + +++A+ +
Sbjct: 180 KSWWNVVNWDDVALRFSEARVA 201
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP:
a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A
Length = 207
Score = 323 bits (830), Expect = e-114
Identities = 90/196 (45%), Positives = 122/196 (62%), Gaps = 2/196 (1%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
LP LD+ Y LEP I+ +I ELHHSKHH TYV N A+ KL+ A A D SAI+
Sbjct: 5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEK 64
Query: 83 ALKFNGGGHINHALFWKMLNKNGG-KPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSG 141
L FN GH+NH ++WK L+ NGG KP+ +L+ AI +FGS DK + + AA+ +QGSG
Sbjct: 65 NLAFNLAGHVNHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSG 124
Query: 142 WGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYD 201
W LG+D L I + F G+ PL +D+WEHA+YLQYKNV+ ++ KA ++
Sbjct: 125 WAALGWDTLGNKLLIFQVYDHQTNF-PLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWN 183
Query: 202 IMNWNYINELYAKAKS 217
++NW + YA A S
Sbjct: 184 VVNWADVQSRYAAATS 199
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer,
oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP:
a.2.11.1 d.44.1.1
Length = 221
Score = 323 bits (830), Expect = e-114
Identities = 95/215 (44%), Positives = 119/215 (55%), Gaps = 8/215 (3%)
Query: 8 ATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKA 67
+ + LP L Y Y L+P I+ +IMELHH KHHQTYV NAALE K
Sbjct: 2 TSPIQTPINTMSQQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKK 61
Query: 68 AVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGG-----KPSDDLSNAIKASFGS 122
A D +V + A+KFNGGGHINH+LFWK L + L AI+ +GS
Sbjct: 62 AAEATDVPKLVSVQQAIKFNGGGHINHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGS 121
Query: 123 LDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEH 182
DK KD +GIQGSGWGWL D L I TT +QDP+ TG P+FG+D+WEH
Sbjct: 122 FDKFKDAFNTTLLGIQGSGWGWLVTDGPKGKLDITTTHDQDPV---TGAAPVFGVDMWEH 178
Query: 183 AYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKS 217
AYYLQY N + +Y K I++++NW Y
Sbjct: 179 AYYLQYLNDKASYAKGIWNVINWAEAENRYIAGDK 213
>3ak2_A Superoxide dismutase [MN/FE]; cambialistic, oxidoreductase; 1.35A
{Aeropyrum pernix} PDB: 3ak1_A 3ak3_A 1p7g_A 3evk_A
Length = 214
Score = 321 bits (824), Expect = e-113
Identities = 81/199 (40%), Positives = 116/199 (58%), Gaps = 4/199 (2%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
ELP L Y Y LEP I EIM+LHH KHH TYV NAALEK++ + + +
Sbjct: 8 ELPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMR 67
Query: 83 ALKFNGGGHINHALFWKML---NKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQG 139
FN GHI H +FW + K GG P +++ I+ FG +K K +AA+ ++G
Sbjct: 68 DFSFNYAGHIMHTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFSAAAKTVEG 127
Query: 140 SGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAI 199
GWG L +DP ++ L+I + L T GL P+ IDVWEHAYYLQYKN R +YV+
Sbjct: 128 VGWGVLAFDPLTEELRILQVEKHNVLM-TAGLVPILVIDVWEHAYYLQYKNDRGSYVENW 186
Query: 200 YDIMNWNYINELYAKAKSS 218
++++NW+ + + +A ++
Sbjct: 187 WNVVNWDDVEKRLEQALNN 205
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide
inactivation, oxidoreductase; 2.60A
{Methanothermobacterthermautotrophicus} SCOP: a.2.11.1
d.44.1.1
Length = 205
Score = 317 bits (815), Expect = e-112
Identities = 72/200 (36%), Positives = 110/200 (55%), Gaps = 4/200 (2%)
Query: 19 QGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV 78
+ ELP+L Y Y LEP I+ E + +HH KHHQ YV NA L KL A ++ I
Sbjct: 6 KKFYELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIK 65
Query: 79 QLGPALKFNGGGHINHALFWKML---NKNGGKPSDDLSNAIKASFGSLDKLKDELTAASV 135
L F+ GG++ H FW + ++ GG+PS L+ I+ FGS ++ + E + A++
Sbjct: 66 AALKELSFHVGGYVLHLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQAAI 125
Query: 136 GIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNY 195
+GSGW L Y ++ L I + + L +DVWEHAYY+ Y+NVRP+Y
Sbjct: 126 SAEGSGWAVLTYCQRTDRLFIMQVEKHNVNV-IPHFRILLVLDVWEHAYYIDYRNVRPDY 184
Query: 196 VKAIYDIMNWNYINELYAKA 215
V+A ++I+NW + + +
Sbjct: 185 VEAFWNIVNWKEVEKRFEDI 204
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A
{Acidilobus saccharovorans}
Length = 223
Score = 316 bits (811), Expect = e-111
Identities = 78/200 (39%), Positives = 110/200 (55%), Gaps = 5/200 (2%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-QLG 81
ELP L Y Y LEP+I++E + HH KHH YV NAAL+KL+ + V +
Sbjct: 20 ELPPLPYNYDALEPIISAETLRYHHDKHHLGYVNGANAALDKLEKYLNGQLTDIDVRAVS 79
Query: 82 PALKFNGGGHINHALFWKMLNKN---GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQ 138
+FN GGHI H L+W + GG P + +AI FGS DK K A+ ++
Sbjct: 80 RDFEFNYGGHILHTLYWLNMAPKGKGGGTPGGAIGDAINKFFGSFDKFKKLFGDAAKNVE 139
Query: 139 GSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKA 198
G GW L YDP + L+I + + TT L PL +DV+EHAYY+ Y+N R YV +
Sbjct: 140 GVGWAILAYDPVTGDLRILQVEKHNNVV-TTNLIPLLAVDVFEHAYYIDYRNDRAKYVDS 198
Query: 199 IYDIMNWNYINELYAKAKSS 218
+D++NW+ + Y KA ++
Sbjct: 199 WWDLINWDDVEARYQKALNT 218
>3rn4_A Superoxide dismutase [MN], mitochondrial; mitochondrial manganese
superoxide dismutase, iron-binding, mitochondrion,
oxidoreductase; 1.79A {Saccharomyces cerevisiae} PDB:
3bfr_A 3lsu_A*
Length = 215
Score = 313 bits (805), Expect = e-110
Identities = 77/216 (35%), Positives = 119/216 (55%), Gaps = 14/216 (6%)
Query: 13 VTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKA----- 67
+++ + + LP L + + LEP I+ +I ELH++KHHQTYV +N A+++ +
Sbjct: 1 LSTTARRTKVTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQFQELSDLL 60
Query: 68 --AVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKN----GGKPSDDLSNAIKASFG 121
+ +A ++ + +KF+GGG NH LFW+ L G P+ L+ AI FG
Sbjct: 61 AKEPSPANARKMIAIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFG 120
Query: 122 SLDKLKDELTAASVGIQGSGWGWLGYD-PKSKSLKIATTANQDPLFETTGLKPLFGIDVW 180
SLD+L G+QGSGW ++ + L + T NQD + T L PL ID W
Sbjct: 121 SLDELIKLTNTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQDTV--TGPLVPLVAIDAW 178
Query: 181 EHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAK 216
EHAYYLQY+N + +Y KAI++++NW + + K
Sbjct: 179 EHAYYLQYQNKKADYFKAIWNVVNWKEASRRFDAGK 214
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus
acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A*
1wb7_A
Length = 210
Score = 312 bits (802), Expect = e-110
Identities = 69/210 (32%), Positives = 111/210 (52%), Gaps = 7/210 (3%)
Query: 14 TSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANND 73
T I E P+L Y LEP I+ +I+++H++ HH+ YV N+ L++L+ + +
Sbjct: 1 TQVIQLKRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDL 60
Query: 74 ASAIVQLGPALK---FNGGGHINHALFWKML---NKNGGKPSDDLSNAIKASFGSLDKLK 127
L L+ FN GH HA++W + K GGKP L++ I +GS D+ K
Sbjct: 61 PQGQYDLQGILRGLTFNINGHKLHAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFK 120
Query: 128 DELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQ 187
+ ++ + GSGW L YD +S +L+I T N L + +D +EHAYYLQ
Sbjct: 121 QVFSESANSLPGSGWTVLYYDNESGNLQIMTVENHFMNH-IAELPVILIVDEFEHAYYLQ 179
Query: 188 YKNVRPNYVKAIYDIMNWNYINELYAKAKS 217
YKN R +Y+ A ++++NW+ + K +
Sbjct: 180 YKNKRGDYLNAWWNVVNWDDAEKRLQKYLN 209
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase,
oxidoreductase; 2.60A {Candida albicans}
Length = 206
Score = 311 bits (800), Expect = e-109
Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 8/198 (4%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
LPK+D+ LEP I+ EI +LH +KHH YV YNAA++ L+ AV D ++V++
Sbjct: 9 SLPKIDWALDALEPYISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRDLKSVVEIQQ 68
Query: 83 ALKFNGGGHINHALFWKML--NKNGG----KPSDDLSNAIKASFGSLDKLKDELTAASVG 136
+KF+GGGH NH+LFWK L GG S L I A +GS+ L D + G
Sbjct: 69 NIKFHGGGHTNHSLFWKNLAPVSKGGGKHPDTSSALGKQIVAQYGSVSNLIDITNSKLAG 128
Query: 137 IQGSGWGWLGYDPKS-KSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNY 195
IQGSGW ++ + ++ +L + TTANQD + L P+ ID WEHAYYLQY+NV+ +Y
Sbjct: 129 IQGSGWAFIVKNKQNGGALDVVTTANQDTIS-APHLVPIIAIDAWEHAYYLQYQNVKLDY 187
Query: 196 VKAIYDIMNWNYINELYA 213
KAI++++NW Y+
Sbjct: 188 FKAIWNVINWAEAESRYS 205
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide
acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1
d.44.1.1 PDB: 3mds_A
Length = 203
Score = 305 bits (783), Expect = e-107
Identities = 89/203 (43%), Positives = 125/203 (61%), Gaps = 10/203 (4%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKA-------AVANND 73
P +LP L Y Y+ LEP I+++ ME+HH KHH YVTN NAALEK + +
Sbjct: 3 PFKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHL 62
Query: 74 ASAIVQLGPALKFNGGGHINHALFWKMLNKNGG-KPSDDLSNAIKASFGSLDKLKDELTA 132
A+ + A++ NGGGH+NH+LFW++L G +P +L AI FG LK++LT
Sbjct: 63 AALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQ 122
Query: 133 ASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVR 192
A++G GSGW WL D L + +T NQD G P+ GIDVWEHAYYL+Y+N R
Sbjct: 123 AAMGRFGSGWAWLVKD-PFGKLHVLSTPNQDNPV-MEGFTPIVGIDVWEHAYYLKYQNRR 180
Query: 193 PNYVKAIYDIMNWNYINELYAKA 215
+Y++AI++++NW+ E + KA
Sbjct: 181 ADYLQAIWNVLNWDVAEEFFKKA 203
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex
pyrophilus} SCOP: a.2.11.1 d.44.1.1
Length = 212
Score = 296 bits (760), Expect = e-103
Identities = 70/206 (33%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 20 GPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLK------AAVANND 73
G +L D+ I++E +E H H++ YV YN EKL + AN +
Sbjct: 1 GVHKLEPKDHLKPQNLEGISNEQIEPHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQN 60
Query: 74 ASAIVQLGPALKFNGGGHINHALFWKMLNKNGG-KPSDDLSNAIKASFGSLDKLKDELTA 132
S +L FN G + H L++ ML G +PS+ L I+ G LD +EL A
Sbjct: 61 YSEYRELKVEETFNYMGVVLHELYFGMLTPGGKGEPSEALKKKIEEDIGGLDACTNELKA 120
Query: 133 ASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVR 192
A + GW LG D S L + + TGL PL ID +EHAYY+ YKN R
Sbjct: 121 A--AMAFRGWAILGLDIFSGRLVVNGLDAHNVYN-LTGLIPLIVIDTYEHAYYVDYKNKR 177
Query: 193 PNYVKAIYDIMNWNYINELYAKAKSS 218
P Y+ A + +NW+ +NE + KA +
Sbjct: 178 PPYIDAFFKNINWDVVNERFEKAMKA 203
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F
mutant, hydrogen bond, reactivity, ultra-high
resolution, oxidoreductase; 0.90A {Escherichia coli}
SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A
1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A
Length = 205
Score = 293 bits (753), Expect = e-102
Identities = 86/206 (41%), Positives = 112/206 (54%), Gaps = 15/206 (7%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLG- 81
LP L Y Y LEP + + ME+HH+KHHQTYV N NAALE L I +L
Sbjct: 3 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQ 62
Query: 82 ------PALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASV 135
L+ N GGH NH+LFWK L K G DL AI+ FGS+D K E A+
Sbjct: 63 LPADKKTVLRNNAGGHANHSLFWKGL-KKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAA 121
Query: 136 GIQGSGWGWLGYDPKSKSLKIATTANQD-PLFE----TTGLKPLFGIDVWEHAYYLQYKN 190
GSGW WL L + +TANQD PL P+ G+DVWEHAY+L+++N
Sbjct: 122 SRFGSGWAWLVLKGDK--LAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYFLKFQN 179
Query: 191 VRPNYVKAIYDIMNWNYINELYAKAK 216
RP+Y+K ++++NW+ +A K
Sbjct: 180 RRPDYIKEFWNVVNWDEAAARFAAKK 205
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A
{Bacillus anthracis}
Length = 217
Score = 290 bits (745), Expect = e-101
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 11/207 (5%)
Query: 20 GPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQ 79
+LPKL Y Y +LEP I+S + +HH KHH TYV N NAALE + +
Sbjct: 11 SSFQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCN 70
Query: 80 LG-------PALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELT 131
L A++ NGGGH H+LFW++++ GG+P+ D++ I F + D LKD+L+
Sbjct: 71 LETLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLS 130
Query: 132 AASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNV 191
A++ GSG+GWL D + L + +T NQD G PL IDVWEHAYYL+Y+N
Sbjct: 131 KAAISRFGSGYGWLVLDGEE--LSVMSTPNQDTPL-QEGKIPLLVIDVWEHAYYLKYQNR 187
Query: 192 RPNYVKAIYDIMNWNYINELYAKAKSS 218
RP +V + +NW+ +NE Y +A S
Sbjct: 188 RPEFVTNWWHTVNWDRVNEKYLQAIQS 214
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena
SP} SCOP: a.2.11.1 d.44.1.1
Length = 248
Score = 291 bits (747), Expect = e-101
Identities = 81/215 (37%), Positives = 125/215 (58%), Gaps = 12/215 (5%)
Query: 13 VTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAA---- 68
+ + P ELP L YGY LE I++E M+LHH KHH YV N N AL+K
Sbjct: 29 IDRQLGTNPAELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSS 88
Query: 69 ---VANNDASAIVQLGPALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLD 124
+ + S + ++ NGGGH+NH +FW++++ + GG+P+ D++ I +FGS +
Sbjct: 89 VEALLRDLNSVPEDIRTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFE 148
Query: 125 KLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHA 183
+ K + A GSGW WL +P+ + L++ +T NQD P+ G P+ G DVWEHA
Sbjct: 149 EFKKQFNQAGGDRFGSGWVWLVRNPQGQ-LQVVSTPNQDNPI--MEGSYPIMGNDVWEHA 205
Query: 184 YYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS 218
YYL+Y+N RP Y+ ++++NW+ IN ++ S
Sbjct: 206 YYLRYQNRRPEYLNNWWNVVNWSEINRRTQASRQS 240
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase,
manganese, metal- binding, oxidoreductase,
phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A
1jr9_A
Length = 202
Score = 280 bits (719), Expect = 3e-97
Identities = 91/205 (44%), Positives = 128/205 (62%), Gaps = 13/205 (6%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKA-------AVANND 73
ELP+L Y Y LEP I+ E M +HH+KHH TYVTN N A+E A + +
Sbjct: 2 AYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADL 61
Query: 74 ASAIVQLGPALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTA 132
S + A++ NGGGH NH LFW +L+ N GG+P+ L+ I + FGS DK K++ A
Sbjct: 62 DSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAA 121
Query: 133 ASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNV 191
A+ G GSGW WL + + L+I +T NQD PL + G P+ G+DVWEHAYYL Y+N
Sbjct: 122 AAAGRFGSGWAWLVVN--NGKLEITSTPNQDSPL--SEGKTPILGLDVWEHAYYLNYQNR 177
Query: 192 RPNYVKAIYDIMNWNYINELYAKAK 216
RP+Y+ A ++++NW+ + LY++ K
Sbjct: 178 RPDYISAFWNVVNWDEVARLYSERK 202
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus
marinus}
Length = 280
Score = 280 bits (719), Expect = 3e-96
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 6/207 (2%)
Query: 15 SPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANND- 73
S + L YG + LEPVI++ ++ H++KHHQ Y+ A ++ +
Sbjct: 72 SGVAPSSGLRMTLPYGLEALEPVISAATVDFHYNKHHQGYIQKLLDATGLPESRINLKSL 131
Query: 74 -ASAIVQLGPALKFNGGGHINHALFWKMLNKNGG---KPSDDLSNAIKASFGSLDKLKDE 129
+ G + G NH ++W + G L I+A +G++D++K+
Sbjct: 132 VTLGPDRAGENVFNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKEN 191
Query: 130 LTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQY 188
+ + GSGW WL +D + + L + T + PL E G PLF DVWEHAYYL Y
Sbjct: 192 FMRKATALFGSGWIWLVWDTRERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAYYLDY 251
Query: 189 KNVRPNYVKAIYDIMNWNYINELYAKA 215
++ R Y+ + ++NW + +
Sbjct: 252 QHDRAAYLTRWWSLINWEFADSNLPSD 278
>3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding,
oxidoreductase, metal binding protein; 1.80A
{Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A
2aw9_A
Length = 211
Score = 277 bits (711), Expect = 6e-96
Identities = 85/212 (40%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAA------VANNDA 74
LP+L Y Y LEP I++ ME+HH+KHHQTYV N N ALE + A +
Sbjct: 2 AYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLD 61
Query: 75 SAIVQLGPALKFNGGGHINHALFWKMLNKN-----GGKPSDDLSNAIKASFGSLDKLKDE 129
AL+ N GGH NH++FW+++ + +PS +L +AI ++FGS D K +
Sbjct: 62 RVPADKKGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQK 121
Query: 130 LTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFE----TTGLKPLFGIDVWEHAY 184
A+ GSGW WL K L + +TANQD PL P+ G+DVWEHAY
Sbjct: 122 FEDAAKTRFGSGWAWLVV--KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAY 179
Query: 185 YLQYKNVRPNYVKAIYDIMNWNYINELYAKAK 216
YL Y+N RP+Y+ A ++++NW+ +++ YA AK
Sbjct: 180 YLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK 211
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald
biostructures, structural national institute of allergy
and infectious diseases; 1.85A {Leishmania major}
Length = 230
Score = 273 bits (701), Expect = 3e-94
Identities = 78/207 (37%), Positives = 112/207 (54%), Gaps = 6/207 (2%)
Query: 14 TSPILQGPIELPKLDYGYKD-LEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANN 72
T P L+ P ELP L + YKD ++PV++ +ELH+SKHH YV N + +
Sbjct: 25 TLPHLRYPAELPTLGFNYKDGIQPVMSPRQLELHYSKHHSAYVDKLNTLGKGYEGKTIEE 84
Query: 73 DASAIVQLG--PALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDEL 130
A + + H NH+ FWK L+ G L NAI FGS+D
Sbjct: 85 IILATTGINESKVMFNQAAQHFNHSFFWKCLSPGGKPMPKTLENAIAKQFGSVDDFMVSF 144
Query: 131 TAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYK 189
A V GSGW WL DP++K L I +T+N PL T+GL+P+F DVWEHAYY ++
Sbjct: 145 QQAGVNNFGSGWTWLCVDPQTKELLIDSTSNAGCPL--TSGLRPIFTADVWEHAYYKDFE 202
Query: 190 NVRPNYVKAIYDIMNWNYINELYAKAK 216
N R +Y+K ++ I++W ++ +Y +A
Sbjct: 203 NRRADYLKELWQIVDWEFVCHMYERAT 229
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase;
1.90A {Trypanosoma cruzi} PDB: 3esf_A
Length = 194
Score = 265 bits (680), Expect = 2e-91
Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 23 ELPKLDYGYKDLEPV-INSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLG 81
+P L +GY L ++ + + LH+ KHHQ YVT NAA + A + I
Sbjct: 3 SIPPLPWGYDGLAAKGLSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEIIRTEK 62
Query: 82 PALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGS 140
+ NH +W+ + N GG+P+ +++ I ASFGS K K+E T +VG GS
Sbjct: 63 GPIFNLAAQIFNHTFYWESMCPNGGGEPTGKVADEINASFGSFAKFKEEFTNVAVGHFGS 122
Query: 141 GWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIY 200
GW WL D S LK+ T + LKPL DVWEHAYY+ YKN R YV+ +
Sbjct: 123 GWAWLVKDTNSGKLKVYQTHDAGCPLTEPNLKPLLTCDVWEHAYYVDYKNDRAAYVQTFW 182
Query: 201 DIMNWNYINE 210
+++NW +
Sbjct: 183 NVVNWKNVER 192
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus
marinus}
Length = 226
Score = 265 bits (680), Expect = 5e-91
Identities = 77/228 (33%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 1 MLRQTLLATRKIVTSPILQ-----------GPIELPKLDYGYKDLEPVINSEIMELHHSK 49
ML + T+P+L+ GP + P L Y LEP +++E + HH K
Sbjct: 1 MLSVAGHRFASLATTPVLRMGLARCFSSVTGPFQCPPLPYVKNALEPHMSAETLTYHHDK 60
Query: 50 HHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKN-GGKP 108
HHQTYV N+ + + I NH F+ L N GG+P
Sbjct: 61 HHQTYVDTLNSIAAENSTIASKTLEQIIKTETGKPFNQAAQVYNHTFFFNNLAPNGGGEP 120
Query: 109 SDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFE 167
+ ++ I FGS +K K++ +AA+VG GSGW WL D LKI + P+
Sbjct: 121 TGKIAELITRDFGSFEKFKEDFSAAAVGHFGSGWVWLIAD--DGKLKIVQGHDAGNPI-- 176
Query: 168 TTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKA 215
PL IDVWEHAYY+ Y+N R YVK ++++NW+++N+ AKA
Sbjct: 177 RESKTPLMNIDVWEHAYYIDYRNARAQYVKNYWNLVNWDFVNDNVAKA 224
>3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori}
Length = 213
Score = 263 bits (675), Expect = 2e-90
Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 6/196 (3%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-QLG 81
L +L + + ++ + HH KHHQTYV N N ++ + AI+ +
Sbjct: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKG--TDFEKSSLFAILTKSS 60
Query: 82 PALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSG 141
+ N NH +W L+ SD+L A++ FGSL+K K++ ++ + GSG
Sbjct: 61 GGVFNNAAQIYNHDFYWDCLSPKATALSDELKGALEKDFGSLEKFKEDFIKSATTLFGSG 120
Query: 142 WGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIY 200
W W Y+ ++ ++I T+N P+ T PL +DVWEHAYY+ +KN RP Y++ Y
Sbjct: 121 WNWAAYNLDTQKIEIIQTSNAQTPV--TDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFY 178
Query: 201 DIMNWNYINELYAKAK 216
+NW+++++ Y AK
Sbjct: 179 GHINWHFVSQCYEWAK 194
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A
{Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1
Length = 197
Score = 256 bits (657), Expect = 7e-88
Identities = 81/197 (41%), Positives = 108/197 (54%), Gaps = 8/197 (4%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-QLG 81
ELP L Y + L+P I+ E +E HH KHH TYV N N + IV
Sbjct: 3 ELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPG--TEFEGKTLEEIVKTSS 60
Query: 82 PALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGS 140
+ N NH +W L+ N GG+P+ L++AI A+FGS DK K+E T SVG GS
Sbjct: 61 GGIFNNAAQVWNHTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGS 120
Query: 141 GWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAI 199
GWGWL SL +A+T PL T G PL DVWEHAYY+ Y+N+RP YV+A
Sbjct: 121 GWGWLVKKA-DGSLALASTIGAGCPL--TIGDTPLLTCDVWEHAYYIDYRNLRPKYVEAF 177
Query: 200 YDIMNWNYINELYAKAK 216
++++NW ++ E +
Sbjct: 178 WNLVNWAFVAEQFEGKT 194
>2awp_A Iron super-oxide dismutase; structural genomics, structural
genomics consortium, SGC, oxidoreductase; 2.00A
{Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A
Length = 198
Score = 256 bits (657), Expect = 8e-88
Identities = 71/199 (35%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-Q 79
I LPKL Y L P I+ E + H++KHH YV N ++ A I+ +
Sbjct: 2 AIILPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNGLIKD--TPFATKSLVEIMKE 59
Query: 80 LGPALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQ 138
A+ N NH+ +W + N GG+P ++ I+ FGS + K+E + G
Sbjct: 60 STGAIFNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHF 119
Query: 139 GSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVK 197
GSGWGWL + + L I T + P+ + TG P+ D+WEHAYY+ Y+N RP+YVK
Sbjct: 120 GSGWGWLVLN-NNNKLVILQTHDAGNPIKDNTG-IPILTCDIWEHAYYIDYRNDRPSYVK 177
Query: 198 AIYDIMNWNYINELYAKAK 216
A ++++NWN+ NE KA
Sbjct: 178 AWWNLVNWNFANENLKKAL 196
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics
center for infect disease, GRAM-negative bacteria; 1.95A
{Anaplasma phagocytophilum}
Length = 227
Score = 252 bits (647), Expect = 5e-86
Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 12/207 (5%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANN-------- 72
EL L Y + LEP I+S +++ H++ HH+TYV N + + N
Sbjct: 22 MFELSDLPY--EGLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDIVV 79
Query: 73 DASAIVQLGPALKFNGGGHINHALFWKMLNKNGG-KPSDDLSNAIKASFGSLDKLKDELT 131
A G A+ N NH +W+ + NGG P + L I+ SFGS++ + T
Sbjct: 80 KAHNSGSAGRAIFNNAAQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNAFT 139
Query: 132 AASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNV 191
+ +G GSGW WL YD +K+LK+ +TAN D T G PL +DVWEHAYYL Y N+
Sbjct: 140 TSGLGQFGSGWVWLVYDEDAKALKVVSTANADSPLLTQGQLPLATMDVWEHAYYLDYLNL 199
Query: 192 RPNYVKAIYD-IMNWNYINELYAKAKS 217
R Y+ + ++NW+++ A
Sbjct: 200 RKKYIDVFLEHLLNWDFVLGRLEDAGV 226
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic,
oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP:
a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A
Length = 191
Score = 250 bits (641), Expect = 1e-85
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 8/195 (4%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-Q 79
EL L Y L PVI+ E +E HH KH +TYV N N + N D + IV +
Sbjct: 2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIG--TEFENADLNTIVQK 59
Query: 80 LGPALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQ 138
+ N G +NH L++ GG P L AI FGS +K K+E A +
Sbjct: 60 SEGGIFNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLF 119
Query: 139 GSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVK 197
GSGW WL D + L I N P+ GL PL G DVWEHAYYL Y+N R +++K
Sbjct: 120 GSGWVWLASD-ANGKLSIEKEPNAGNPV--RKGLNPLLGFDVWEHAYYLTYQNRRADHLK 176
Query: 198 AIYDIMNWNYINELY 212
++ I++W+ + Y
Sbjct: 177 DLWSIVDWDIVESRY 191
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura
genomics; 1.90A {Francisella tularensis subsp}
Length = 195
Score = 247 bits (632), Expect = 4e-84
Identities = 77/195 (39%), Positives = 107/195 (54%), Gaps = 7/195 (3%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-Q 79
ELPKL Y LE I+ E +E H+ KHHQTYVTN N +E + IV
Sbjct: 5 KFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEG--TEHDGRNLEEIVKT 62
Query: 80 LGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQG 139
+ N NH +W L N + S L A+ +FGS++ K++ + A++ G
Sbjct: 63 SNGGIFNNAAQVFNHTFYWNCLTPNKTEASSQLKAALIETFGSVENFKEQFSKAAIATFG 122
Query: 140 SGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKA 198
SGW WL + L+I TT+N PL T KPL DVWEHAYY+ Y+N RP YV+A
Sbjct: 123 SGWAWLVKNT-EGKLEIVTTSNAGCPL--TENKKPLLTFDVWEHAYYIDYRNARPKYVEA 179
Query: 199 IYDIMNWNYINELYA 213
++DI+NW +++E +A
Sbjct: 180 LWDIVNWQFVSEQFA 194
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal
stability, psychrophilic protein, metal-binding,
oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas
haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A
Length = 192
Score = 246 bits (631), Expect = 6e-84
Identities = 71/193 (36%), Positives = 98/193 (50%), Gaps = 5/193 (2%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-QLG 81
ELP L Y LEP I+ E +E HH KHH TYV N + N IV
Sbjct: 3 ELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPG--TKFENKSLEEIVCSSD 60
Query: 82 PALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGS 140
+ N NH +W L+ N GG P+ +++AI A +GS D K+ L +V GS
Sbjct: 61 GGVFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGS 120
Query: 141 GWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIY 200
W WL SL I T+N G+ P+ +D+WEHAYY+ Y+NVRP+Y+K +
Sbjct: 121 SWTWLVKL-ADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFW 179
Query: 201 DIMNWNYINELYA 213
++NW + N +A
Sbjct: 180 SLVNWEFANANFA 192
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella
burnetii}
Length = 210
Score = 246 bits (631), Expect = 8e-84
Identities = 71/199 (35%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-Q 79
ELP L Y LEP I+ E +E HH KHH+ YV N +E I+ +
Sbjct: 2 AFELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEG--TPFEKEPLEEIIRK 59
Query: 80 LGPALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQ 138
+ N H NH +W ++ + GG PS +L++AI +FGSL+K K T ++
Sbjct: 60 SDGGIFNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHF 119
Query: 139 GSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVK 197
GSGW WL D + L++ +T N P+ T G KPL DVWEHAYY+ +N RP YV
Sbjct: 120 GSGWAWLVKD-NNGKLEVLSTVNARNPM--TEGKKPLMTCDVWEHAYYIDTRNDRPKYVN 176
Query: 198 AIYDIMNWNYINELYAKAK 216
+ ++NW+++ + +
Sbjct: 177 NFWQVVNWDFVMKNFKSEN 195
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod,
oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1
d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A
Length = 192
Score = 243 bits (623), Expect = 9e-83
Identities = 74/194 (38%), Positives = 104/194 (53%), Gaps = 8/194 (4%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-QLG 81
ELP L Y L P I++E +E H+ KHHQTYVTN N ++ A I+
Sbjct: 3 ELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSE 60
Query: 82 PALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGS 140
+ N NH +W L N GG+P+ ++ AI ASFGS K + T A++ GS
Sbjct: 61 GGVFNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGS 120
Query: 141 GWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAI 199
GW WL + L I +T+N PL TT PL +DVWEHAYY+ Y+N RP Y++
Sbjct: 121 GWTWLVKN-SDGKLAIVSTSNAGTPL--TTDATPLLTVDVWEHAYYIDYRNARPGYLEHF 177
Query: 200 YDIMNWNYINELYA 213
+ ++NW ++ + A
Sbjct: 178 WALVNWEFVAKNLA 191
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase,
thermophIle, reactive oxygen species, cyanobacteria,
SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP:
a.2.11.1 d.44.1.1
Length = 199
Score = 230 bits (589), Expect = 2e-77
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 26/208 (12%)
Query: 23 ELPKLDYGYKDLEPV-INSEIMELHHSKHHQTYVTNYNAALEK-----------LKAAVA 70
L + LEP ++++ +E H+ KHH+ YV N N + ++
Sbjct: 3 VQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYG 62
Query: 71 NNDASAIVQLGPALKFNGGGHINHALFWKMLNKN-GGKPSDDLSNAIKASFGSLDKLKDE 129
+ I N NH FW L GG P+ D++ I ++FGS D+ K +
Sbjct: 63 DAAKVGI-------FNNAAQVWNHTFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQ 115
Query: 130 LTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHAYYLQY 188
A+ GSGW WL + + LK+ TAN + PL G PL IDVWEHAYYL Y
Sbjct: 116 FKNAAATQFGSGWAWLVLEAGT--LKVTKTANAENPL--VHGQVPLLTIDVWEHAYYLDY 171
Query: 189 KNVRPNYVKAIYD-IMNWNYINELYAKA 215
+N RP+++ + ++NW+++ + A A
Sbjct: 172 QNRRPDFIDNFLNQLVNWDFVAKNLAAA 199
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic,
metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1
d.44.1.1
Length = 238
Score = 231 bits (591), Expect = 2e-77
Identities = 70/231 (30%), Positives = 101/231 (43%), Gaps = 29/231 (12%)
Query: 12 IVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEK------- 64
P + EL Y LEPV++ + +E H KHH+TYV N +
Sbjct: 9 FKEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTELDGKS 68
Query: 65 LKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGG-KPSDDLSNAIKASFGSL 123
L+ + + N NH FW+ + GG KPS +L I+ FGS
Sbjct: 69 LEEIIVTAYNKGDI---LPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSF 125
Query: 124 DKLKDELTAASVGIQGSGWGWLGYDP---------------KSKSLKIATTANQD-PLFE 167
+K DE AA+ GSGW WL Y + L + + N PL
Sbjct: 126 EKFLDEFKAAAATQFGSGWAWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVW 185
Query: 168 TTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYD-IMNWNYINELYAKAKS 217
G PL IDVWEHAYYL ++N RP+Y+ D +++W+ ++ +AK+
Sbjct: 186 -GGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKA 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 50/184 (27%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
E + Y YKD+ V ++ K + K+ ++ + I+
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKD----------VQDMPKSILSKEEIDHIIMSKD 59
Query: 83 ALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGW 142
A+ LFW +L+K ++ + + + +
Sbjct: 60 AVS------GTLRLFWTLLSKQ--------EEMVQKFVEEVLR-IN-------------Y 91
Query: 143 GWL----GYDPKSKSLKIATTANQ-DPLFETTGLKPLFGIDVWEHAYYLQYKN----VRP 193
+L + + S+ Q D L+ + +V YL+ + +RP
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 194 N-YV 196
V
Sbjct: 150 AKNV 153
Score = 41.0 bits (95), Expect = 2e-04
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 24/123 (19%)
Query: 4 QTLLATR-KIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNY-NAA 61
+ LL TR K VT + LD+ L P E+ L + Y +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP---DEVKSL---------LLKYLDCR 314
Query: 62 LEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFG 121
+ L V + + + +++ + WK +N D L+ I++S
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIR----DGLATWDNWKHVNC------DKLTTIIESSLN 364
Query: 122 SLD 124
L+
Sbjct: 365 VLE 367
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.17
Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 70/183 (38%)
Query: 38 INSEIMELHHSKH-----HQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHI 92
I++ +L + + NY A K SA+ + A+ G +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR---AVG-EGNAQL 156
Query: 93 NHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLG------ 146
A+F GG QG+ +
Sbjct: 157 -VAIF-------GG-------------------------------QGNTDDYFEELRDLY 177
Query: 147 --YDPKSKSLKIATTAN--QDPLFETTGLKPLF--GIDV--WEHAYYLQYKNVRPN--YV 196
Y L I +A + + T + +F G+++ W L+ + P+ Y+
Sbjct: 178 QTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEW-----LENPSNTPDKDYL 231
Query: 197 KAI 199
+I
Sbjct: 232 LSI 234
Score = 31.6 bits (71), Expect = 0.24
Identities = 42/263 (15%), Positives = 79/263 (30%), Gaps = 86/263 (32%)
Query: 2 LRQTL-LATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNA 60
+ T + IV P+ L G K N M + T +
Sbjct: 1653 FKDTYGFSILDIVI----NNPVNLTIHFGGEKGKRIRENYSAM---------IFETIVDG 1699
Query: 61 ALEKLKA-AVANNDASAIVQLGPALKFNGGGHINH------ALF------WKMLNKNGGK 107
L+ K N +++ G ++ AL ++ L G
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEK------GLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 108 PSDDL----S----NAIKASFGSLDKLKD--EL---------TAASVGIQG-SGWGWLGY 147
P+D S A+ + + ++ E+ A G S +G +
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMS-IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 148 DPKSKSLKIATTANQ---DPLFETTGLKPLFGIDVWEHAYYLQ---YKNVRPN--YV--- 196
+P + + A Q + + + TG + ++ Y NV N YV
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTG-------------WLVEIVNY-NV-ENQQYVAAG 1857
Query: 197 --KAIYDIMNWNYINELYAKAKS 217
+A+ + N +N + K +
Sbjct: 1858 DLRALDTVT--NVLNFI--KLQK 1876
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Length = 343
Score = 30.0 bits (68), Expect = 0.58
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 85 KFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDEL 130
FNGGGH+N + GG+ + A+K +L+K K L
Sbjct: 305 FFNGGGHLNAS---------GGEFYGTMEEAVKVFEQALEKYKPLL 341
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.61
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 10/31 (32%)
Query: 61 ALEKLKAAV---ANNDASAIVQLGPALKFNG 88
AL+KL+A++ A D SA PAL
Sbjct: 21 ALKKLQASLKLYA--DDSA-----PALAIKA 44
Score = 26.1 bits (56), Expect = 6.8
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 12/40 (30%)
Query: 3 RQTLLATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEI 42
+Q L +K+ S L P L I + +
Sbjct: 19 KQAL---KKLQASLKLYADDSAPAL---------AIKATM 46
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT,
topoisomerase II binding protein, checkpoint; NMR {Homo
sapiens} SCOP: c.15.1.5
Length = 132
Score = 28.7 bits (64), Expect = 0.75
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 53 TYVTNYNAALEKLKAAVANNDASAIVQLGPALK-----FNGGGHINHALFWKMLNKNGGK 107
+ + N+ LE + N D SA L G +++N GG
Sbjct: 10 SICNSLNSKLEPTLENLENLDVSAFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGV 69
Query: 108 PSDDLSNAI 116
+ L+ +
Sbjct: 70 RFNQLNEDV 78
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein
STR initiative, northeast structural genomics
consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Length = 320
Score = 27.6 bits (62), Expect = 3.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 83 ALKFNGGGHIN 93
A +F GGGH N
Sbjct: 279 ANQFGGGGHPN 289
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective
decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella
bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A*
3dtv_A* 3eis_A*
Length = 240
Score = 26.8 bits (58), Expect = 5.4
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 92 INHALFWKMLNKNGGKPSDDLSNAIKASFGSL 123
+ A FW + GG + +G L
Sbjct: 211 SSPAGFWDAVRLAGGGAK------ARPGYGRL 236
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 26.7 bits (59), Expect = 6.3
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 53 TYVTNYNAALEKLKAAVANNDASAIVQLGPA 83
Y + + L+ +A I L
Sbjct: 62 QYGQDPAQYISTLQTRLAGGKPPTIFNLTMD 92
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 7.3
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 13/63 (20%)
Query: 23 ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAA--------VANNDA 74
L +LD K +E E E K + + + +EK K DA
Sbjct: 97 RLQELDAASKVME----QEWRE-KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Query: 75 SAI 77
I
Sbjct: 152 DII 154
>3fmb_A Dimeric protein of unknown function and ferredoxi fold;
YP_212648.1, stress responsive A/B barrel domain; HET:
MSE; 1.85A {Bacteroides fragilis}
Length = 118
Score = 25.2 bits (55), Expect = 10.0
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 92 INHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGS 140
+ H + +K+ + + + N+ K + +L + VG+ +
Sbjct: 21 VKHIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMN 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,383,851
Number of extensions: 196910
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 64
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.9 bits)