BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16345
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
LS + P+L D+S + PGE+L ++G SGCGKTTLL CLAG + DSG I L+ + +
Sbjct: 10 LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69
Query: 87 KR------WKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
+ +R++ Y++Q+ + FP LT+ + + + +
Sbjct: 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN 107
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 10 PEKYPLSHRPLELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
P+ L E+ F + + DK+ P+LKD++ +KPG+ +A++GP+G GKTT++N L
Sbjct: 343 PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
Query: 69 GRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLRQTLE 113
+D G I ++ + K + I VLQ I F T+++ L+
Sbjct: 403 RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-STTVKENLK 450
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37 LKDVSGV---VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKR 91
+K V GV VK GE +A++GPSGCGKTT L LAG K SG I + +N R
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYR 75
Query: 92 KICYVLQQDIFFPELTLRQTL 112
++ V Q +P +T+ + +
Sbjct: 76 EVGMVFQNYALYPHMTVFENI 96
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 2 VSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKT 61
V ++P P ++ E V + D R L+DVS V PG+ LA++GPSG GK+
Sbjct: 38 VKDLPGAGPLRFQKGRIEFENVHFSYA---DGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 62 TLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPE 105
T+L L + SG IR++ + +++ + I V Q + F +
Sbjct: 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLDS-GVIRLNKERLNKR 88
LK+V+ +K GE +++MGPSG GK+T+LN CL G V +D+ L+ + L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 89 WKRKICYVLQQDIFFPELTLRQTLEV 114
+ KI +V QQ P LT + +E+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVEL 106
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLDS-GVIRLNKERLNKR 88
LK+V+ +K GE +++MGPSG GK+T+LN CL G V +D+ L+ + L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 89 WKRKICYVLQQDIFFPELTLRQTLEV 114
+ KI +V QQ P LT + +E+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVEL 106
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKI 93
+ KD++ + GE + +GPSGCGK+TLL +AG + SG + + ++R+N +R +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 94 CYVLQQDIFFPELTLRQTLEVSI 116
V Q +P L++ + + +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGL 100
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKI 93
+ KD++ + GE + +GPSGCGK+TLL +AG + SG + + ++R+N +R +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 94 CYVLQQDIFFPELTLRQTLEVSI 116
V Q +P L++ + + +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGL 100
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKI 93
+ KD++ + GE + +GPSGCGK+TLL +AG + SG + + ++R+N +R +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 94 CYVLQQDIFFPELTLRQTLEVSI 116
V Q +P L++ + + +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGL 100
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKIC 94
L +++ +K GE +A++GPSG GK+TLL +AG K SG I +++ + + R +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 95 YVLQQDIFFPELTLRQTL 112
V Q +P +T+ + +
Sbjct: 79 LVFQNWALYPHMTVYKNI 96
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 15/94 (15%)
Query: 21 ELVFSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLL-------NCLAGR 70
+++F + +RP ILK +S V+PG+ LA++GPSGCGK+T++ + L G
Sbjct: 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135
Query: 71 VKLDSGVIR-LNKERLNKRWKRKICYVLQQDIFF 103
+ +D I+ LN E + +I V Q+ F
Sbjct: 1136 IFIDGSEIKTLNPEHT----RSQIAIVSQEPTLF 1165
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLL-------NCLAGRVKLDSGVIR-LNKERLN 86
PIL+ ++ V G+ +A++G SGCGK+T++ + L G++ +D +R +N E L
Sbjct: 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491
Query: 87 K 87
K
Sbjct: 492 K 492
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
L V+++ + IL+ +S V PGE+ A+MGP+G GK+TL LAGR
Sbjct: 7 LHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 50
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
L V+++ + IL+ +S V PGE+ A+MGP+G GK+TL LAGR
Sbjct: 26 LHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW--KRKIC 94
L ++S V+ GE ++GP+G GKT L +AG DSG I L+ + + K I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 95 YVLQQDIFFPELTLRQTLEVSI 116
+V Q FP + +++ LE +
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGM 97
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
S L + ++ ++ DVS + GE++A++GP+G GK+TLL L G + G L +
Sbjct: 15 SHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74
Query: 85 LNKRWKRK 92
LN W+ K
Sbjct: 75 LNS-WQPK 81
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIRLNKER 84
L ++D ILK V+ VV GE+ A+MGP+G GK+TL LAG ++ G I L+ E
Sbjct: 9 LWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN 68
Query: 85 L-----NKRWKRKICYVLQQDIFFPELTLRQTLEVSI 116
+ ++R ++ + Q + P +T+ L +++
Sbjct: 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL 105
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 15/91 (16%)
Query: 24 FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKL 73
FSG+ RP +L+ +S VK G+ LA++G SGCGK+T++ L AG V L
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 74 DSGVIRLNKERLNKRWKR-KICYVLQQDIFF 103
D I+ +LN +W R ++ V Q+ I F
Sbjct: 1093 DGKEIK----QLNVQWLRAQLGIVSQEPILF 1119
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTT-------LLNCLAGRVKLDSGVIRLNKERLNKR 88
ILK ++ VK G+ +A++G SGCGK+T L + L G V +D IR +N R
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR----TINVR 460
Query: 89 WKRKICYVLQQD 100
+ R+I V+ Q+
Sbjct: 461 YLREIIGVVSQE 472
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 15/91 (16%)
Query: 24 FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKL 73
FSG+ RP +L+ +S VK G+ LA++G SGCGK+T++ L AG V L
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 74 DSGVIRLNKERLNKRWKR-KICYVLQQDIFF 103
D I+ +LN +W R ++ V Q+ I F
Sbjct: 1093 DGKEIK----QLNVQWLRAQLGIVSQEPILF 1119
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTT-------LLNCLAGRVKLDSGVIRLNKERLNKR 88
ILK ++ VK G+ +A++G SGCGK+T L + L G V +D IR +N R
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR----TINVR 460
Query: 89 WKRKICYVLQQD 100
+ R+I V+ Q+
Sbjct: 461 YLREIIGVVSQE 472
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 15 LSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74
LS R ++ + D IL+D+S +P ++A GPSG GK+T+ + L +
Sbjct: 2 LSARHVDFAYD------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
Query: 75 SGVIRLNKERLN----KRWKRKICYVLQQDIFFPELTLRQT----LEVSIADED 120
+G I ++ + ++ + W+ +I +V QD T+R+ LE DED
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFV-SQDSAIMAGTIRENLTYGLEGDYTDED 108
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLDS-GVIRLNKERLNKR 88
LK+V+ +K GE +++ GPSG GK+T LN CL G V +D+ L+ + L K
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 89 WKRKICYVLQQDIFFPELTLRQTLEV 114
+ KI +V QQ P LT + +E+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVEL 106
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-------GRVKLDSG-VIRLNKERLNK 87
ILK +S VK GE ++++G SG GK+TLL L G+V L+ V N++ L+
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 88 RWKRKICYVLQQDIFFPELT 107
RK+ +V Q PELT
Sbjct: 79 LRNRKLGFVFQFHYLIPELT 98
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNKR 88
+LK ++ ++ GE++ V+GPSG GK+T L CL G + +D ++ LNK
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK- 76
Query: 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115
+ ++ V Q+ FP +T+ + ++
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLA 103
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNKR 88
+LK ++ ++ GE++ V+GPSG GK+T L CL G + +D ++ LNK
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK- 97
Query: 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115
+ ++ V Q+ FP +T+ + ++
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLA 124
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK------ 90
+KD+S +K GE L ++GPSGCGKTT L +AG + G I + + K
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 91 --RKICYVLQQDIFFPELTLRQTL 112
R + V Q +P T+ +
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNI 105
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
PI +D S + G + A++GPSG GK+T+L+ L +G + LD IR +LN
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR----QLNP 413
Query: 88 RWKR-KICYVLQQDIFF 103
W R KI V Q+ I F
Sbjct: 414 VWLRSKIGTVSQEPILF 430
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
PI +D S + G + A++GPSG GK+T+L+ L +G + LD IR +LN
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR----QLNP 444
Query: 88 RWKR-KICYVLQQDIFF 103
W R KI V Q+ I F
Sbjct: 445 VWLRSKIGTVSQEPILF 461
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKIC 94
++ VS ++ GE++ ++GPSG GKTT+L +AG + G + + +R+ KR +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 95 YVLQQDIFFPELTL 108
V Q F +T+
Sbjct: 91 LVFQNYALFQHMTV 104
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN----KERLNK 87
++ PILKD++ ++ GE +A +G SG GK+TL+N + + SG I ++ K+ L
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 411
Query: 88 RWKRKICYVLQQDIFFPE 105
+ +I V Q +I F +
Sbjct: 412 SLRNQIGLVQQDNILFSD 429
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
++ L++VS V+ GE L V G +G GK+TLL +AG ++ SG + + ER R+
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 78
Query: 93 ---ICYVLQQDIFFPE 105
I + +D FF E
Sbjct: 79 NIGIAFQYPEDQFFAE 94
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
++ L++VS V+ GE L V G +G GK+TLL +AG ++ SG + + ER R+
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 80
Query: 93 ---ICYVLQQDIFFPE 105
I + +D FF E
Sbjct: 81 NIGIAFQYPEDQFFAE 96
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
L FS S L P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+
Sbjct: 41 LFFSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LK+++ ++ GE+LA+ G +G GKT+LL + G ++ G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LK+++ ++ GE+LA+ G +G GKT+LL + G ++ G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LK+++ ++ GE+LA+ G +G GKT+LL + G ++ G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LK+++ ++ GE+LA+ G +G GKT+LL + G ++ G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 32/45 (71%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LK+++ ++ GE+LA+ G +G GKT+LL + G ++ G+I+
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+ K+ ILK +S ++ GE+ ++GP+G GKTT L ++ +K SG++
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
L FS S L P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+
Sbjct: 41 LSFSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
L FS S L P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+
Sbjct: 41 LSFSNFS--LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
P+L V+ VKPG L+AV+G +G GK+TL+N + GRV++D +R K K
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL---K 413
Query: 88 RWKRKICYVLQQDIFFPELTLRQTLE 113
+ I V Q+ + F T+++ L+
Sbjct: 414 DLRGHISAVPQETVLFSG-TIKENLK 438
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK------ 90
++++S VK GE + ++GPSGCGKTT L +AG + G I + + + K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 91 --RKICYVLQQDIFFPELTL 108
R I V Q +P +T+
Sbjct: 79 KDRDIAMVFQSYALYPHMTV 98
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 78
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 52 VMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDIFFPELTLR 109
++GP+G GK+ L +AG VK D G +RLN + +R I +V Q FP L++
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 110 QTLEVSI 116
+ + +
Sbjct: 89 RNIAYGL 95
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKICYVLQQDI 101
+K GE L ++GPSGCGKTT L +AG + G I + R I V Q
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 93
Query: 102 FFPELTLRQTL 112
+P +T+ + +
Sbjct: 94 VWPHMTVYENI 104
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKICYVLQQDI 101
+K GE L ++GPSGCGKTT L +AG + G I + R I V Q
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 94
Query: 102 FFPELTLRQTL 112
+P +T+ + +
Sbjct: 95 VWPHMTVYENI 105
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL-NKERLNKR 88
L VS V G++ ++GP+G GK+TL+N + G +K D G + NK+ NK
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKR 91
+G K GE++ ++GP+G GKTT L G + D G + K+ L+ + +R
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR 338
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLNKERLNKRWKRKICYVLQQDIF 102
K +L V+G +G GKTT+L LAG + + G ++ K+ + KR++ K Y ++++
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 103 FPELTLRQTLE 113
EL + ++
Sbjct: 83 SNELKIVHKIQ 93
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL-NKERLNKR 88
L VS V G++ ++GP+G GK+TL+N + G +K D G + NK+ NK
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-------GRVKLDSGVIRLNKERLNKRW 89
L +V+ ++ GE ++GPSG GKTT + +A G + D ++ N + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 90 KRKICYVLQQDIFFPELTLRQTL 112
RKI V Q +P LT + +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENI 103
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-------GRVKLDSGVIRLNKERLNKRW 89
L +V+ ++ GE ++GPSG GKTT + +A G + D ++ N + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 90 KRKICYVLQQDIFFPELTLRQTL 112
RKI V Q +P LT + +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENI 103
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR-----WKRKICYVLQQDI 101
G+++ ++G +G GKTT L+ +AG V+ G I N + + + + I V +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 102 FFPELTLRQTL 112
FPELT+ + L
Sbjct: 92 IFPELTVYENL 102
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL-NKERLNKR 88
L VS V G++ ++GP+G GK+TL+N + G +K D G + NK+ NK
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------AGRVKLDSGVIRLNKERLNKRW 89
IL+++S + PG+ + ++G +G GK+TLL+ G +++D ++ + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDG----VSWDSITLEQ 91
Query: 90 KRKICYVLQQDIFFPELTLRQTLEVSIADEDE 121
RK V+ Q +F T R+ L+ + A D+
Sbjct: 92 WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
+LKDV+ + G++ V+G +G GKTTLL LAG
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG 59
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 40 VSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
+SG V+ GE+L ++GP+G GK+TLL +AG
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
L +SG V+ GE+L ++GP+G GK+TLL +AG
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 16/68 (23%)
Query: 18 RPLELVFSGLSVTLD-------KRP-ILKDVS--------GVVKPGELLAVMGPSGCGKT 61
RP E+ F+ LS +D + P ++KD G ++ GE++ ++GP+G GKT
Sbjct: 323 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKT 382
Query: 62 TLLNCLAG 69
T + LAG
Sbjct: 383 TFVKMLAG 390
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
+VK G ++ ++GP+G GKTT + LAG++
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQL 127
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 24 FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
F +S RP +L+ ++ ++PGE+ A++GP+G GK+T+ L + G + L
Sbjct: 17 FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL 76
Query: 81 NKERL----NKRWKRKICYVLQQDIFF 103
+ + L ++ R++ V Q+ F
Sbjct: 77 DGKPLPQYEHRYLHRQVAAVGQEPQVF 103
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 16/68 (23%)
Query: 18 RPLELVFSGLSVTLD-------KRP-ILKDVS--------GVVKPGELLAVMGPSGCGKT 61
RP E+ F+ LS +D + P ++KD G ++ GE++ ++GP+G GKT
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKT 396
Query: 62 TLLNCLAG 69
T + LAG
Sbjct: 397 TFVKMLAG 404
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
+VK G ++ ++GP+G GKTT + LAG++
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAG 69
G +K GE++ ++GP+G GKTT + LAG
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG 334
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
VVK G ++ ++GP+G GK+T + LAG++
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQL 71
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86
LSV DK P+L+ ++ ++ G ++ GP+G GKTTLL ++ +K G I N +
Sbjct: 16 LSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT 74
Query: 87 KRWKRKICYVLQQDIFFP 104
K K KI + L ++I P
Sbjct: 75 K-VKGKIFF-LPEEIIVP 90
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 40 VSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
+SG V+ GE+L ++GP+G GK+TLL AG
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG 48
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
G E+L +MG +G GKTTL+ LAG +K D G
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
+PG++L ++G +G GK+T L LAG+ K + G
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter
Length = 253
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 7 SLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC 66
+L E ++ +F L+ L+K G++LAV+G +GCGK+TLL+
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNK-------------GDILAVLGQNGCGKSTLLDL 50
Query: 67 LAG 69
L G
Sbjct: 51 LLG 53
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
L +SG V+ GE+L ++GP+G GK+TLL AG
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG 48
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 11 EKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
E Y L L +S D LK ++ +K GE+ A++G +G GK+TL G
Sbjct: 4 EDYILKVEELNYNYS------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57
Query: 71 VKLDSGVIRLNKERLNKRWKRKICYVLQQDI 101
+K SG I + + ++ + RK L++ I
Sbjct: 58 LKPSSGRILFDNKPID--YSRKGIMKLRESI 86
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+E + G S +P + D++ +AV+GP+G GK+TL+N L G + SG +
Sbjct: 677 MEFQYPGTS-----KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 44 VKPGELLAVMGPSGCGKTTLLNCLA 68
+K + GP+GCGK+TL+ +A
Sbjct: 458 LKRARRYGICGPNGCGKSTLMRAIA 482
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
++P L VS + G+ +A++G SG GK+T+ N +DSG I L+
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+P + D++ +AV+GP+G GK+TL+N L G + SG +
Sbjct: 680 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 51 AVMGPSGCGKTTLLNCLA 68
+ GP+GCGK+TL +A
Sbjct: 459 GICGPNGCGKSTLXRAIA 476
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+P + D++ +AV+GP+G GK+TL+N L G + SG +
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 51 AVMGPSGCGKTTLLNCLA 68
+ GP+GCGK+TL +A
Sbjct: 465 GICGPNGCGKSTLXRAIA 482
>pdb|1J3K|A Chain A, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|B Chain B, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
Length = 280
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 3 SNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTT 62
+N S+P + PLS+R + ++ LS TL K +DV + K +L+ ++G K
Sbjct: 107 TNWESIPKKFKPLSNR-INVI---LSRTLKKEDFDEDVYIINKVEDLIVLLGKLNYYKCF 162
Query: 63 LLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
+L G V L K+ + K + +I + D+FFPE+ + +S++D
Sbjct: 163 IL---GGSVVYQEF---LEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSD 212
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
+ ILK +S + G+ + G +G GKTTLLN L SG + L
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 3 SNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTT 62
+N S+P + PLS+R + ++ LS TL K +DV + K +L+ ++G K
Sbjct: 107 TNWESIPKKFKPLSNR-INVI---LSRTLKKEDFDEDVYIINKVEDLIVLLG-----KLN 157
Query: 63 LLNC--LAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
C L G V L K+ + K + +I + D+FFPE+ + +S++D
Sbjct: 158 YYKCFILGGSVVYQE---FLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSD 212
>pdb|1J3J|A Chain A, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|B Chain B, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
Length = 280
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 3 SNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTT 62
+N S+P + PLS+R + ++ LS TL K +DV + K +L+ ++G K
Sbjct: 107 TNWESIPKKFKPLSNR-INVI---LSRTLKKEDFDEDVYIINKVEDLIVLLGKLNYYKCF 162
Query: 63 LLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
++ G V L K+ + K + +I + D+FFPE+ + +S++D
Sbjct: 163 II---GGSVVYQEF---LEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSD 212
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNKRW 89
L +VS V G++ V+G SG GK+TL+ C+ G V +D + E +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 90 KRKICYVLQQ 99
+R+I + Q
Sbjct: 81 RRQIGMIFQH 90
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
P L ++ + G L+AV+G GCGK++LL+ L + G + + K +
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI---------KGSVA 69
Query: 95 YVLQQ 99
YV QQ
Sbjct: 70 YVPQQ 74
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNKRW 89
L +VS V G++ V+G SG GK+TL+ C+ G V +D + E +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 90 KRKICYVLQQ 99
+R+I + Q
Sbjct: 104 RRQIGXIFQH 113
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NKRW-KR 91
IL +++ +K GE++ ++G SG GK+TL + ++G + ++ L + W +R
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 92 KICYVLQQDIFF 103
++ VLQ ++
Sbjct: 78 QVGVVLQDNVLL 89
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NKRW-KR 91
IL +++ +K GE++ ++G SG GK+TL + ++G + ++ L + W +R
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 92 KICYVLQQDIFF 103
++ VLQ ++
Sbjct: 80 QVGVVLQDNVLL 91
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NKRW-KR 91
IL +++ +K GE++ ++G SG GK+TL + ++G + ++ L + W +R
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 92 KICYVLQQDIFF 103
++ VLQ ++
Sbjct: 84 QVGVVLQDNVLL 95
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NKRW-KR 91
IL +++ +K GE++ ++G SG GK+TL + ++G + ++ L + W +R
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 92 KICYVLQQDIFF 103
++ VLQ ++
Sbjct: 78 QVGVVLQDNVLL 89
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NKRW-KR 91
IL +++ +K GE++ ++G SG GK+TL + ++G + ++ L + W +R
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 92 KICYVLQQDIFF 103
++ VLQ ++
Sbjct: 84 QVGVVLQDNVLL 95
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NKRW-KR 91
IL +++ +K GE++ ++G SG GK+TL + ++G + ++ L + W +R
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83
Query: 92 KICYVLQQDIFF 103
++ VLQ ++
Sbjct: 84 QVGVVLQDNVLL 95
>pdb|1J3I|A Chain A, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|B Chain B, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|3DGA|A Chain A, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|B Chain B, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 280
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 7 SLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC 66
S+P + PLS+R + ++ LS TL K +DV + K +L+ ++G K ++
Sbjct: 111 SIPKKFKPLSNR-INVI---LSRTLKKEDFDEDVYIINKVEDLIVLLGKLNYYKCFII-- 164
Query: 67 LAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
G V L K+ + K + +I + D+FFPE+ + +S++D
Sbjct: 165 -GGSVVYQEF---LEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSD 212
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 24 FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
F +S P +L+ ++ + PG++ A++GP+G GK+T+ L + G + L
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 81 NKERL----NKRWKRKICYVLQQDIFF 103
+ E L + ++ V Q+ + F
Sbjct: 79 DGEPLVQYDHHYLHTQVAAVGQEPLLF 105
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 24 FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
F +S P +L+ ++ + PG++ A++GP+G GK+T+ L + G + L
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 81 NKERL----NKRWKRKICYVLQQDIFF 103
+ E L + ++ V Q+ + F
Sbjct: 79 DGEPLVQYDHHYLHTQVAAVGQEPLLF 105
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 24 FSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
F +S P +L+ ++ + PG++ A++GP+G GK+T+ L + G + L
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 81 NKERL----NKRWKRKICYVLQQDIFF 103
+ E L + ++ V Q+ + F
Sbjct: 79 DGEPLVQYDHHYLHTQVAAVGQEPLLF 105
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAG 69
GE + ++GP+G GKTTLL ++G
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISG 52
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNKRW 89
L +VS V G++ V+G SG GK+TL+ C+ G V +D + E +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 90 KRKICYVLQQ 99
+R+I + Q
Sbjct: 104 RRQIGMIFQH 113
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 7 SLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC 66
S+P + PLS+R + ++ LS TL K +DV + K +L+ ++G K C
Sbjct: 111 SIPKKFKPLSNR-INVI---LSRTLKKEDFDEDVYIINKVEDLIVLLG-----KLNYYKC 161
Query: 67 --LAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
+ G V L K+ + K + +I + D+FFPE+ + +S++D
Sbjct: 162 FIIGGSVVYQE---FLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSD 212
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 7 SLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC 66
S+P + PLS+R + ++ LS TL K +DV + K +L+ ++G K C
Sbjct: 111 SIPKKFKPLSNR-INVI---LSRTLKKEDFDEDVYIINKVEDLIVLLG-----KLNYYKC 161
Query: 67 --LAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIAD 118
+ G V L K+ + K + +I + D+FFPE+ + +S++D
Sbjct: 162 FIIGGSVVYQE---FLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSD 212
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NKRW-KR 91
IL +++ +K GE++ ++G +G GK+TL + ++G + ++ L + W +R
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 79
Query: 92 KICYVLQQDIFF 103
++ VLQ ++
Sbjct: 80 QVGVVLQDNVLL 91
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 21 ELVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+L F ++ T R P L++++ + G+ +A++G SG GK+T+ + + +D G I
Sbjct: 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 79 RLNKERLNK 87
++ L +
Sbjct: 401 LMDGHDLRE 409
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 24 FSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
F ++ T R P L++++ + G+ +A++G SG GK+T+ + + +D G I ++
Sbjct: 344 FRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMD 403
Query: 82 KERLNK 87
L +
Sbjct: 404 GHDLRE 409
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
LK+VS + G +AV G SG GK+TL+N
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
LK+VS + G +AV G SG GK+TL+N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
LK+VS + G +AV G SG GK+TL+N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain
Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain
Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain
Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain
Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain
Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain
Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain
Of Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
LK +S + +P ++A++G GK+ L+N LAG+ K
Sbjct: 39 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKK 74
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVK---LDSGVI 78
++ V GPSG GK TL LA + LDSG I
Sbjct: 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The
Gtp Analogue, Gmppnp
Length = 592
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
LK +S + +P ++A++G GK+ L+N LAG+ K
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKK 63
>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|B Chain B, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|C Chain C, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|D Chain D, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1D1S|A Chain A, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|B Chain B, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|C Chain C, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
pdb|1D1S|D Chain D, Wild-type Human Sigma (class Iv) Alcohol Dehydrogenase
Length = 373
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
+G VKPG V G G G + ++ C + G I LNK++ K
Sbjct: 185 TGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIG-IDLNKDKFEK 230
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 47 GELLAVMGPSGCGKTTLLNCL 67
G +L + PSGCGKTT+ N L
Sbjct: 27 GVILVLSSPSGCGKTTVANKL 47
>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|B Chain B, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|C Chain C, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|D Chain D, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
Length = 373
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK 87
+G VKPG V G G G + ++ C + G I LNK++ K
Sbjct: 185 TGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIG-IDLNKDKFEK 230
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With
Cytidine-Di- Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVK---LDSGVI 78
++ + GPSG GK TL +A ++ LDSG I
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors
Of Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors
Of Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors
Of Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors
Of Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+ GP G GKTT++N + R+ D VI
Sbjct: 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVI 33
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From
E. Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From
E. Coli Complexed With Dcmp
Length = 227
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVK---LDSGVI 78
++ + GPSG GK TL +A ++ LDSG I
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVK---LDSGVI 78
++ + GPSG GK TL +A ++ LDSG I
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
LK ++ + G A++G +G GK+T+ L R G I++ + +NK + I +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNKYNRNSIRSI 94
Query: 97 L----QQDIFFPE 105
+ Q I F E
Sbjct: 95 IGIVPQDTILFNE 107
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+ GP G GKTT++N + R+ D VI
Sbjct: 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVI 57
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+ GP G GKTT++N + R+ D VI
Sbjct: 24 FITFEGPEGSGKTTVINEVYHRLVKDYDVI 53
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 27 LSVTLDKRPILKDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLA----GRVKLDSGVIRL 80
LS + + + + + K G + + + G G GKTT ++CLA GR D GV+ L
Sbjct: 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYAD-GVLEL 78
Query: 81 N 81
N
Sbjct: 79 N 79
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Guanylate Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Guanylate Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
D +P + V G ++ + GPS GK+T++ CL R+
Sbjct: 7 DTKPTARGQPAAV--GRVVVLSGPSAVGKSTVVRCLRERI 44
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
D +P + V G ++ + GPS GK+T++ CL R+
Sbjct: 10 DTKPTARGQPAAV--GRVVVLSGPSAVGKSTVVRCLRERI 47
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74
G+V P +L + GP GCGKT L +A L+
Sbjct: 40 GLVTPAGVL-LAGPPGCGKTLLAKAVANESGLN 71
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLA 68
+P E L + GP G GKTTL + +A
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLA 68
+P E L + GP G GKTTL + +A
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLA 68
+P E L + GP G GKTTL + +A
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
D +P + V G ++ + GPS GK+T++ CL R+
Sbjct: 10 DTKPTARGQPAAV--GRVVVLSGPSAVGKSTVVRCLRERI 47
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 50 LAVMGPSGCGKTTLLNCL 67
L V+G SG GK+TL+N L
Sbjct: 21 LXVVGESGLGKSTLINSL 38
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
++ V G +G GKTTL+ L + D +I +
Sbjct: 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 50 LAVMGPSGCGKTTLLNCL 67
L V+G SG GK+TL+N L
Sbjct: 40 LMVVGESGLGKSTLINSL 57
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 50 LAVMGPSGCGKTTLLNCL 67
L V+G SG GK+TL+N L
Sbjct: 40 LXVVGESGLGKSTLINSL 57
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 50 LAVMGPSGCGKTTLLNCL 67
L V+G SG GK+TL+N L
Sbjct: 8 LMVVGESGLGKSTLINSL 25
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 24/81 (29%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSG---------VIRLNKERLNKRWKRKICYVLQQD 100
+AV+G GK+++L L+G V L G V++L K +W+ K+ Y
Sbjct: 73 IAVIGDQSSGKSSVLEALSG-VALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSY----- 126
Query: 101 IFFPELTLRQTLEVSIADEDE 121
Q E+ I+D E
Sbjct: 127 ---------QDYEIEISDASE 138
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 24/81 (29%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSG---------VIRLNKERLNKRWKRKICYVLQQD 100
+AV+G GK+++L L+G V L G V++L K +W+ K+ Y
Sbjct: 48 IAVIGDQSSGKSSVLEALSG-VALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSY----- 101
Query: 101 IFFPELTLRQTLEVSIADEDE 121
Q E+ I+D E
Sbjct: 102 ---------QDYEIEISDASE 113
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSG 76
L ++G +G GKTTLL L K D G
Sbjct: 5 LXIVGNTGSGKTTLLQQLXKTKKSDLG 31
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 43 VVKPGELLAVMGPSGCGKTTLLNCLAGR 70
+++ G + + G GK++LLN LAGR
Sbjct: 3 LLREGMKVVIAGRPNAGKSSLLNALAGR 30
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74
+P + VMG SG GKTT+ + +A L+
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE 56
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSG 76
L ++G +G GKTTLL L K D G
Sbjct: 3 LXIVGNTGSGKTTLLQQLXKTKKSDLG 29
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 18 RPLELVFSGLSVTLDKRPILKDVS----GVVK-----PGELLAVMGPSGCGKTTLLNCLA 68
R LE ++SGL PI+K + G+ + G++ + G SG GK++LLN +
Sbjct: 137 RELEEIYSGLY------PIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190
Query: 69 GRVKL 73
+KL
Sbjct: 191 PGLKL 195
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAGR 70
G + + G GK++LLN LAGR
Sbjct: 4 GXKVVIAGRPNAGKSSLLNALAGR 27
>pdb|2I76|A Chain A, Crystal Structure Of Protein Tm1727 From Thermotoga
Maritima
pdb|2I76|B Chain B, Crystal Structure Of Protein Tm1727 From Thermotoga
Maritima
Length = 276
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 18 RPLELVFSGLSVTLDKRPILKDVSGVVKPGELL-AVMGPSGCGKTTLLNC 66
R L V+ G + TL+K P L V V+ P + V G L++C
Sbjct: 39 RNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHC 88
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 50 LAVMGPSGCGKTTLLNCL 67
L V+G SG GK+TL+N L
Sbjct: 6 LMVVGESGLGKSTLINSL 23
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 50 LAVMGPSGCGKTTLLNCL 67
L V+G SG GK+TL+N L
Sbjct: 11 LMVVGESGLGKSTLINSL 28
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAG 69
G + G SG GK++LLN L G
Sbjct: 207 GRISIFAGQSGVGKSSLLNALLG 229
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 37 LKDVSGVVKPG----ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
K GV K G +++GP+G GK+ +++ ++ + + S +R N
Sbjct: 12 FKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSN 60
>pdb|3VKW|A Chain A, Crystal Structure Of The Superfamily 1 Helicase From
Tomato Mosaic Virus
Length = 446
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKT 61
+V+S ++ R +LKD V +++ V G GCGKT
Sbjct: 136 VVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKT 175
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAGR 70
G + + G GK++LLN LAGR
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAGR 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,565,390
Number of Sequences: 62578
Number of extensions: 129784
Number of successful extensions: 766
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 171
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)