Query psy16345
Match_columns 121
No_of_seqs 211 out of 2427
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 19:00:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3842 PotA ABC-type spermidi 100.0 3.7E-33 8E-38 213.7 11.9 98 20-117 4-103 (352)
2 COG1126 GlnQ ABC-type polar am 100.0 7.1E-33 1.5E-37 199.0 10.1 96 21-116 2-102 (240)
3 COG3839 MalK ABC-type sugar tr 100.0 1.8E-32 4E-37 208.9 12.3 98 20-117 2-101 (338)
4 COG1116 TauB ABC-type nitrate/ 100.0 2.1E-31 4.7E-36 194.6 10.3 96 21-117 3-98 (248)
5 COG1125 OpuBA ABC-type proline 100.0 3.9E-31 8.4E-36 194.2 8.2 95 21-115 1-99 (309)
6 COG1127 Ttg2A ABC-type transpo 100.0 2E-30 4.3E-35 188.7 10.4 100 20-119 7-113 (263)
7 COG3638 ABC-type phosphate/pho 100.0 3.3E-30 7.2E-35 187.2 10.8 97 20-116 2-106 (258)
8 COG1120 FepC ABC-type cobalami 100.0 1.9E-30 4E-35 191.7 9.5 97 21-117 2-102 (258)
9 COG1118 CysA ABC-type sulfate/ 100.0 2E-30 4.3E-35 194.2 8.0 98 20-117 1-103 (345)
10 COG0410 LivF ABC-type branched 100.0 1.5E-29 3.3E-34 183.0 11.1 96 21-116 3-103 (237)
11 COG2884 FtsE Predicted ATPase 100.0 6.4E-30 1.4E-34 180.9 7.4 97 21-117 1-105 (223)
12 COG1136 SalX ABC-type antimicr 100.0 3.5E-29 7.7E-34 181.9 10.9 94 22-115 2-107 (226)
13 COG1131 CcmA ABC-type multidru 100.0 4E-29 8.6E-34 188.3 11.5 96 21-116 4-103 (293)
14 TIGR03265 PhnT2 putative 2-ami 100.0 8.1E-29 1.8E-33 190.8 13.2 98 20-117 3-102 (353)
15 PRK11432 fbpC ferric transport 100.0 1E-28 2.3E-33 190.0 13.5 98 20-117 5-104 (351)
16 PRK11650 ugpC glycerol-3-phosp 100.0 9E-29 1.9E-33 190.7 13.0 97 21-117 3-102 (356)
17 PRK09452 potA putrescine/sperm 100.0 1.8E-28 4E-33 190.1 13.4 98 19-116 12-111 (375)
18 PRK13537 nodulation ABC transp 100.0 2E-28 4.3E-33 185.4 13.1 96 20-115 6-104 (306)
19 PRK11607 potG putrescine trans 100.0 3.7E-28 8E-33 188.5 14.8 99 19-117 17-117 (377)
20 COG1135 AbcC ABC-type metal io 100.0 5.8E-29 1.3E-33 186.5 9.7 97 21-117 1-109 (339)
21 PRK10851 sulfate/thiosulfate t 100.0 2.7E-28 5.8E-33 187.9 13.3 96 21-116 2-99 (353)
22 PRK13536 nodulation factor exp 100.0 4.5E-28 9.8E-33 185.8 14.0 97 19-115 39-138 (340)
23 cd03261 ABC_Org_Solvent_Resist 100.0 2.9E-28 6.4E-33 177.5 11.9 94 22-115 1-101 (235)
24 cd03296 ABC_CysA_sulfate_impor 100.0 7E-28 1.5E-32 176.0 12.7 96 21-116 2-99 (239)
25 COG1117 PstB ABC-type phosphat 100.0 1.5E-28 3.3E-33 176.6 8.6 97 20-117 6-113 (253)
26 cd03269 ABC_putative_ATPase Th 100.0 5.4E-28 1.2E-32 173.4 11.3 94 22-115 1-94 (210)
27 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.3E-28 1.1E-32 178.2 11.4 97 20-116 3-102 (254)
28 PRK11000 maltose/maltodextrin 100.0 1.1E-27 2.3E-32 185.5 13.3 96 21-116 3-100 (369)
29 TIGR00960 3a0501s02 Type II (G 100.0 6.6E-28 1.4E-32 173.6 11.2 95 21-115 1-104 (216)
30 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-27 2.5E-32 180.8 13.0 95 20-114 3-100 (303)
31 TIGR03258 PhnT 2-aminoethylpho 100.0 1.1E-27 2.3E-32 185.1 12.9 96 21-116 5-104 (362)
32 cd03259 ABC_Carb_Solutes_like 100.0 7.4E-28 1.6E-32 173.0 10.9 95 22-116 1-97 (213)
33 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.5E-28 1.8E-32 173.1 11.2 95 22-116 1-107 (218)
34 cd03266 ABC_NatA_sodium_export 100.0 1.2E-27 2.7E-32 172.2 11.8 94 22-115 2-102 (218)
35 TIGR03522 GldA_ABC_ATP gliding 100.0 1.9E-27 4E-32 179.5 13.2 95 21-115 2-99 (301)
36 cd03265 ABC_DrrA DrrA is the A 100.0 1.3E-27 2.8E-32 172.6 11.6 94 22-115 1-97 (220)
37 cd03224 ABC_TM1139_LivF_branch 100.0 1.4E-27 3.1E-32 172.2 11.6 95 22-116 1-100 (222)
38 TIGR02868 CydC thiol reductant 100.0 7.9E-28 1.7E-32 192.6 11.2 98 21-119 334-435 (529)
39 TIGR02314 ABC_MetN D-methionin 100.0 1.6E-27 3.5E-32 183.0 12.4 96 21-116 1-107 (343)
40 cd03263 ABC_subfamily_A The AB 99.9 1.5E-27 3.3E-32 172.0 11.4 94 22-115 1-99 (220)
41 TIGR02673 FtsE cell division A 99.9 1.4E-27 3.1E-32 171.5 11.3 95 21-115 1-103 (214)
42 PRK13540 cytochrome c biogenes 99.9 1.8E-27 3.9E-32 169.9 11.5 95 22-116 2-99 (200)
43 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.3E-27 5E-32 171.3 12.0 94 22-116 1-98 (220)
44 PRK09536 btuD corrinoid ABC tr 99.9 3E-27 6.6E-32 184.6 13.3 96 21-116 3-102 (402)
45 cd03268 ABC_BcrA_bacitracin_re 99.9 1.8E-27 4E-32 170.4 11.1 95 22-116 1-97 (208)
46 cd03258 ABC_MetN_methionine_tr 99.9 1.9E-27 4.1E-32 172.9 11.2 94 22-115 2-106 (233)
47 cd03301 ABC_MalK_N The N-termi 99.9 2.3E-27 5E-32 170.3 11.5 94 22-115 1-96 (213)
48 PRK11153 metN DL-methionine tr 99.9 2.8E-27 6.2E-32 181.5 12.7 96 21-116 1-107 (343)
49 PRK09493 glnQ glutamine ABC tr 99.9 3E-27 6.5E-32 172.7 12.2 95 21-115 1-101 (240)
50 COG0411 LivG ABC-type branched 99.9 3E-28 6.6E-33 177.5 6.8 97 20-116 3-104 (250)
51 cd03219 ABC_Mj1267_LivG_branch 99.9 2.1E-27 4.6E-32 172.8 11.3 95 22-116 1-100 (236)
52 PRK11831 putative ABC transpor 99.9 4.3E-27 9.3E-32 174.9 13.1 96 20-115 6-108 (269)
53 TIGR02315 ABC_phnC phosphonate 99.9 1.7E-27 3.7E-32 174.0 10.7 95 21-115 1-103 (243)
54 cd03262 ABC_HisP_GlnQ_permease 99.9 2.4E-27 5.3E-32 170.0 11.3 94 22-115 1-100 (213)
55 PRK11248 tauB taurine transpor 99.9 4.1E-27 8.8E-32 174.0 12.6 94 21-115 1-94 (255)
56 PRK11629 lolD lipoprotein tran 99.9 6.4E-27 1.4E-31 170.4 13.2 95 21-115 5-111 (233)
57 PRK10908 cell division protein 99.9 3.5E-27 7.7E-32 170.5 11.7 94 22-115 2-103 (222)
58 cd03218 ABC_YhbG The ABC trans 99.9 3E-27 6.5E-32 171.6 11.3 95 22-116 1-100 (232)
59 PRK11247 ssuB aliphatic sulfon 99.9 5.8E-27 1.2E-31 173.6 12.8 95 21-116 12-106 (257)
60 cd03260 ABC_PstB_phosphate_tra 99.9 2.1E-27 4.6E-32 172.1 10.3 94 22-116 1-105 (227)
61 TIGR03410 urea_trans_UrtE urea 99.9 3.7E-27 7.9E-32 171.1 11.4 95 22-116 1-100 (230)
62 PRK11264 putative amino-acid A 99.9 4.4E-27 9.5E-32 172.6 11.7 95 21-115 3-109 (250)
63 cd03256 ABC_PhnC_transporter A 99.9 3E-27 6.5E-32 172.4 10.8 94 22-115 1-102 (241)
64 COG3845 ABC-type uncharacteriz 99.9 1.7E-27 3.8E-32 186.8 10.1 98 20-117 3-105 (501)
65 PRK11124 artP arginine transpo 99.9 6.5E-27 1.4E-31 171.0 12.5 94 21-114 2-105 (242)
66 PRK13538 cytochrome c biogenes 99.9 5.7E-27 1.2E-31 167.7 11.9 96 21-116 1-99 (204)
67 cd03295 ABC_OpuCA_Osmoprotecti 99.9 5E-27 1.1E-31 171.8 11.7 94 22-115 1-99 (242)
68 cd03292 ABC_FtsE_transporter F 99.9 5.4E-27 1.2E-31 168.3 11.6 95 22-116 1-103 (214)
69 PRK10895 lipopolysaccharide AB 99.9 6.5E-27 1.4E-31 171.0 12.1 95 21-115 3-102 (241)
70 PRK11614 livF leucine/isoleuci 99.9 8E-27 1.7E-31 170.1 12.6 96 21-116 5-105 (237)
71 cd03257 ABC_NikE_OppD_transpor 99.9 5.5E-27 1.2E-31 169.6 11.5 94 22-115 2-108 (228)
72 TIGR03411 urea_trans_UrtD urea 99.9 8.1E-27 1.7E-31 170.4 12.4 96 21-116 2-102 (242)
73 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 7.4E-27 1.6E-31 170.3 12.1 95 21-115 1-98 (236)
74 PRK10584 putative ABC transpor 99.9 1.2E-26 2.5E-31 168.3 12.9 96 20-115 5-112 (228)
75 PRK11231 fecE iron-dicitrate t 99.9 7.5E-27 1.6E-31 172.1 12.1 95 21-115 2-100 (255)
76 cd03230 ABC_DR_subfamily_A Thi 99.9 1.1E-26 2.4E-31 162.6 12.1 92 22-113 1-95 (173)
77 PRK14267 phosphate ABC transpo 99.9 9.9E-27 2.1E-31 171.1 12.4 96 21-116 4-110 (253)
78 cd03229 ABC_Class3 This class 99.9 7.7E-27 1.7E-31 164.0 11.3 93 22-114 1-99 (178)
79 COG2274 SunT ABC-type bacterio 99.9 3.9E-27 8.4E-32 194.1 11.2 99 21-120 471-575 (709)
80 PRK11300 livG leucine/isoleuci 99.9 1.2E-26 2.5E-31 170.7 12.6 95 21-115 5-104 (255)
81 PRK13543 cytochrome c biogenes 99.9 1.5E-26 3.2E-31 166.8 12.9 96 20-115 10-106 (214)
82 PRK10247 putative ABC transpor 99.9 1E-26 2.3E-31 168.7 12.2 95 20-115 6-104 (225)
83 PRK14247 phosphate ABC transpo 99.9 1.1E-26 2.4E-31 170.6 12.4 96 21-116 3-107 (250)
84 PRK13548 hmuV hemin importer A 99.9 1.2E-26 2.6E-31 171.6 12.7 96 21-116 2-101 (258)
85 PRK10575 iron-hydroxamate tran 99.9 1.1E-26 2.4E-31 172.2 12.4 96 20-115 10-109 (265)
86 TIGR03005 ectoine_ehuA ectoine 99.9 9.7E-27 2.1E-31 171.2 12.0 94 22-115 1-111 (252)
87 TIGR03608 L_ocin_972_ABC putat 99.9 6.2E-27 1.4E-31 167.1 10.6 93 24-116 1-101 (206)
88 TIGR00972 3a0107s01c2 phosphat 99.9 9.9E-27 2.1E-31 170.7 11.8 94 21-115 1-105 (247)
89 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.1E-26 2.3E-31 191.1 13.3 96 21-117 451-552 (686)
90 cd03264 ABC_drug_resistance_li 99.9 6.7E-27 1.5E-31 167.8 10.6 93 22-115 1-96 (211)
91 cd03231 ABC_CcmA_heme_exporter 99.9 1E-26 2.3E-31 166.1 11.4 95 22-116 1-98 (201)
92 TIGR01189 ccmA heme ABC export 99.9 1.3E-26 2.9E-31 165.1 11.8 95 22-116 1-98 (198)
93 PRK10619 histidine/lysine/argi 99.9 1.5E-26 3.2E-31 170.7 12.4 95 21-115 5-116 (257)
94 COG1129 MglA ABC-type sugar tr 99.9 8.2E-27 1.8E-31 184.8 11.7 98 20-117 7-109 (500)
95 TIGR02211 LolD_lipo_ex lipopro 99.9 1.6E-26 3.5E-31 166.7 12.1 94 22-115 2-107 (221)
96 PRK14250 phosphate ABC transpo 99.9 1.4E-26 3E-31 169.5 11.8 95 20-115 2-100 (241)
97 COG4152 ABC-type uncharacteriz 99.9 1.6E-27 3.4E-32 174.3 6.6 96 21-116 2-97 (300)
98 PRK14242 phosphate transporter 99.9 2.1E-26 4.6E-31 169.3 12.6 97 19-116 4-111 (253)
99 cd03226 ABC_cobalt_CbiO_domain 99.9 9.5E-27 2E-31 166.5 10.2 94 23-116 1-97 (205)
100 PRK10253 iron-enterobactin tra 99.9 1.7E-26 3.8E-31 171.2 12.0 96 20-115 6-105 (265)
101 PRK13539 cytochrome c biogenes 99.9 2.3E-26 4.9E-31 165.1 12.1 95 21-115 2-97 (207)
102 COG1137 YhbG ABC-type (unclass 99.9 1.9E-28 4.1E-33 174.7 1.2 97 20-116 3-104 (243)
103 cd03235 ABC_Metallic_Cations A 99.9 6.3E-27 1.4E-31 168.1 8.9 93 23-116 1-95 (213)
104 cd03233 ABC_PDR_domain1 The pl 99.9 3E-26 6.5E-31 164.1 12.1 96 21-116 3-108 (202)
105 PRK14259 phosphate ABC transpo 99.9 2.4E-26 5.2E-31 170.9 12.0 97 19-116 11-118 (269)
106 PRK14235 phosphate transporter 99.9 3.5E-26 7.5E-31 169.8 12.6 96 20-116 18-124 (267)
107 TIGR03740 galliderm_ABC gallid 99.9 2.8E-26 6E-31 165.9 11.7 94 22-115 1-94 (223)
108 PRK14241 phosphate transporter 99.9 2.9E-26 6.3E-31 169.2 12.0 96 21-116 4-110 (258)
109 TIGR03873 F420-0_ABC_ATP propo 99.9 2.9E-26 6.3E-31 169.0 12.0 94 22-115 2-99 (256)
110 cd03232 ABC_PDR_domain2 The pl 99.9 3.3E-26 7.2E-31 162.6 11.8 95 21-115 3-103 (192)
111 cd03225 ABC_cobalt_CbiO_domain 99.9 1.6E-26 3.5E-31 165.7 10.3 93 23-115 1-100 (211)
112 PRK14273 phosphate ABC transpo 99.9 3.7E-26 8.1E-31 168.2 12.4 95 21-116 7-112 (254)
113 cd03213 ABCG_EPDR ABCG transpo 99.9 3.5E-26 7.6E-31 162.8 11.8 96 21-116 3-107 (194)
114 PRK11174 cysteine/glutathione 99.9 1.7E-26 3.8E-31 186.8 11.3 97 21-119 349-450 (588)
115 PRK14268 phosphate ABC transpo 99.9 4.4E-26 9.5E-31 168.4 12.5 96 20-116 11-117 (258)
116 COG1124 DppF ABC-type dipeptid 99.9 2.1E-26 4.6E-31 167.8 10.5 97 20-116 2-109 (252)
117 PRK14269 phosphate ABC transpo 99.9 3.5E-26 7.5E-31 167.8 11.8 94 21-115 2-102 (246)
118 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.1E-26 2.4E-31 191.6 10.2 97 21-118 477-579 (710)
119 PRK13632 cbiO cobalt transport 99.9 4.3E-26 9.3E-31 169.7 12.4 97 20-116 6-109 (271)
120 PRK10744 pstB phosphate transp 99.9 5E-26 1.1E-30 168.2 12.7 96 20-116 12-118 (260)
121 COG1132 MdlB ABC-type multidru 99.9 1.2E-26 2.6E-31 187.3 10.0 98 21-119 328-430 (567)
122 PRK14256 phosphate ABC transpo 99.9 5.6E-26 1.2E-30 167.1 12.6 95 21-115 4-109 (252)
123 PRK14272 phosphate ABC transpo 99.9 4.8E-26 1E-30 167.2 12.2 97 20-116 3-110 (252)
124 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.9E-26 8.4E-31 163.8 11.4 93 22-116 1-95 (211)
125 PRK13637 cbiO cobalt transport 99.9 5.4E-26 1.2E-30 170.6 12.7 96 21-116 2-109 (287)
126 PRK13635 cbiO cobalt transport 99.9 5E-26 1.1E-30 170.2 12.1 96 21-116 5-107 (279)
127 TIGR01978 sufC FeS assembly AT 99.9 4.3E-26 9.3E-31 166.4 11.4 94 22-115 1-101 (243)
128 PRK13647 cbiO cobalt transport 99.9 5.6E-26 1.2E-30 169.4 12.2 96 21-116 4-105 (274)
129 PRK14248 phosphate ABC transpo 99.9 7.7E-26 1.7E-30 167.9 12.8 95 20-115 20-125 (268)
130 TIGR01193 bacteriocin_ABC ABC- 99.9 1.5E-26 3.3E-31 190.7 10.0 95 21-116 473-572 (708)
131 PRK09984 phosphonate/organopho 99.9 5.5E-26 1.2E-30 168.1 11.9 96 21-116 4-111 (262)
132 PRK13644 cbiO cobalt transport 99.9 5.4E-26 1.2E-30 169.5 11.9 96 21-116 1-103 (274)
133 TIGR00968 3a0106s01 sulfate AB 99.9 5.6E-26 1.2E-30 166.0 11.7 95 22-116 1-97 (237)
134 PRK14237 phosphate transporter 99.9 8.6E-26 1.9E-30 167.7 12.9 97 19-116 18-125 (267)
135 PRK13650 cbiO cobalt transport 99.9 5.3E-26 1.2E-30 169.9 11.8 96 21-116 4-107 (279)
136 PRK13646 cbiO cobalt transport 99.9 5E-26 1.1E-30 170.6 11.6 95 21-116 2-111 (286)
137 KOG0058|consensus 99.9 1.3E-26 2.8E-31 188.2 9.1 99 21-120 465-570 (716)
138 TIGR02982 heterocyst_DevA ABC 99.9 5.8E-26 1.3E-30 164.1 11.6 95 22-116 2-107 (220)
139 PRK11176 lipid transporter ATP 99.9 3.5E-26 7.5E-31 184.8 11.5 96 21-117 341-442 (582)
140 PRK14262 phosphate ABC transpo 99.9 7.4E-26 1.6E-30 166.2 12.2 95 21-116 3-108 (250)
141 TIGR00958 3a01208 Conjugate Tr 99.9 2.2E-26 4.7E-31 190.2 10.5 98 21-119 478-582 (711)
142 TIGR02857 CydD thiol reductant 99.9 3.2E-26 6.9E-31 183.4 11.1 97 21-118 320-422 (529)
143 PRK14270 phosphate ABC transpo 99.9 7.7E-26 1.7E-30 166.3 12.2 96 20-116 3-109 (251)
144 PRK10070 glycine betaine trans 99.9 8.6E-26 1.9E-30 176.4 13.1 96 21-116 4-131 (400)
145 PRK10790 putative multidrug tr 99.9 6.7E-26 1.5E-30 183.6 13.0 95 21-116 340-439 (592)
146 PRK14274 phosphate ABC transpo 99.9 8.6E-26 1.9E-30 166.8 12.4 96 20-116 11-117 (259)
147 PRK13547 hmuV hemin importer A 99.9 5.2E-26 1.1E-30 169.7 11.3 95 21-115 1-107 (272)
148 PRK10762 D-ribose transporter 99.9 5.8E-26 1.3E-30 181.2 12.3 96 21-116 4-104 (501)
149 PRK14240 phosphate transporter 99.9 9E-26 1.9E-30 165.7 12.1 95 21-116 3-108 (250)
150 PRK13634 cbiO cobalt transport 99.9 7.9E-26 1.7E-30 169.9 12.0 95 21-116 2-111 (290)
151 KOG0057|consensus 99.9 2.7E-26 5.9E-31 181.9 9.9 98 21-120 351-453 (591)
152 PRK14238 phosphate transporter 99.9 1.1E-25 2.4E-30 167.6 12.4 95 20-115 23-128 (271)
153 PRK14254 phosphate ABC transpo 99.9 2.1E-25 4.6E-30 167.3 13.9 95 20-115 38-143 (285)
154 cd03251 ABCC_MsbA MsbA is an e 99.9 6.2E-26 1.3E-30 164.9 10.6 94 22-116 1-100 (234)
155 PRK15079 oligopeptide ABC tran 99.9 1.3E-25 2.8E-30 171.7 12.8 96 20-115 7-124 (331)
156 PRK11160 cysteine/glutathione 99.9 4.3E-26 9.3E-31 184.6 10.7 98 20-118 337-440 (574)
157 PRK13643 cbiO cobalt transport 99.9 9.6E-26 2.1E-30 169.3 11.9 95 21-116 1-110 (288)
158 PRK09700 D-allose transporter 99.9 8.6E-26 1.9E-30 180.5 12.2 95 21-115 5-104 (510)
159 PRK13649 cbiO cobalt transport 99.9 1.3E-25 2.8E-30 167.6 12.2 94 21-115 2-110 (280)
160 PRK13549 xylose transporter AT 99.9 1.1E-25 2.3E-30 179.8 12.6 96 21-116 5-107 (506)
161 TIGR01188 drrA daunorubicin re 99.9 5E-26 1.1E-30 171.7 10.1 87 29-115 1-90 (302)
162 PRK13541 cytochrome c biogenes 99.9 1.2E-25 2.7E-30 159.9 11.5 94 22-116 2-95 (195)
163 cd03246 ABCC_Protease_Secretio 99.9 1E-25 2.2E-30 157.7 10.9 90 22-112 1-96 (173)
164 PRK13657 cyclic beta-1,2-gluca 99.9 6.4E-26 1.4E-30 183.7 11.3 97 21-118 334-435 (588)
165 TIGR01186 proV glycine betaine 99.9 6.8E-26 1.5E-30 175.1 10.9 88 29-116 1-96 (363)
166 TIGR03375 type_I_sec_LssB type 99.9 4.6E-26 1E-30 187.5 10.6 97 21-118 463-565 (694)
167 PRK14251 phosphate ABC transpo 99.9 1.7E-25 3.6E-30 164.4 12.4 95 21-116 4-109 (251)
168 TIGR02769 nickel_nikE nickel i 99.9 1.3E-25 2.9E-30 166.4 12.0 95 21-115 2-114 (265)
169 PRK13641 cbiO cobalt transport 99.9 1.6E-25 3.4E-30 168.0 12.5 95 21-116 2-111 (287)
170 PRK13631 cbiO cobalt transport 99.9 2.2E-25 4.7E-30 169.8 13.4 97 19-116 19-142 (320)
171 PRK14249 phosphate ABC transpo 99.9 1.9E-25 4E-30 164.2 12.4 95 21-116 4-109 (251)
172 PRK14239 phosphate transporter 99.9 1.7E-25 3.7E-30 164.3 12.2 94 21-115 5-109 (252)
173 PRK14265 phosphate ABC transpo 99.9 2.9E-25 6.3E-30 165.6 13.6 97 18-115 17-124 (274)
174 cd03300 ABC_PotA_N PotA is an 99.9 1.3E-25 2.8E-30 163.5 11.4 95 22-116 1-97 (232)
175 PRK15439 autoinducer 2 ABC tra 99.9 1.7E-25 3.8E-30 178.9 13.2 96 21-116 11-111 (510)
176 PRK13638 cbiO cobalt transport 99.9 1E-25 2.2E-30 167.6 11.0 95 21-115 1-102 (271)
177 PRK14261 phosphate ABC transpo 99.9 2.3E-25 5.1E-30 163.9 12.8 96 20-116 5-111 (253)
178 TIGR01277 thiQ thiamine ABC tr 99.9 1.5E-25 3.3E-30 161.2 11.5 92 22-115 1-94 (213)
179 cd03247 ABCC_cytochrome_bd The 99.9 9.7E-26 2.1E-30 158.3 10.2 90 22-112 1-95 (178)
180 cd03254 ABCC_Glucan_exporter_l 99.9 8.6E-26 1.9E-30 163.7 10.2 95 21-116 2-101 (229)
181 PRK13636 cbiO cobalt transport 99.9 1.6E-25 3.5E-30 167.6 11.9 96 21-116 5-108 (283)
182 PRK13640 cbiO cobalt transport 99.9 1.8E-25 3.9E-30 167.3 12.2 97 20-116 4-110 (282)
183 PRK13648 cbiO cobalt transport 99.9 2E-25 4.3E-30 165.9 12.2 97 20-116 6-109 (269)
184 cd03228 ABCC_MRP_Like The MRP 99.9 1.2E-25 2.5E-30 157.1 10.4 90 22-112 1-96 (171)
185 PRK11288 araG L-arabinose tran 99.9 1.9E-25 4.1E-30 178.2 13.0 96 21-116 4-104 (501)
186 PRK14260 phosphate ABC transpo 99.9 2E-25 4.3E-30 164.9 12.0 94 21-115 7-111 (259)
187 cd03234 ABCG_White The White s 99.9 1.3E-25 2.8E-30 162.9 10.8 94 22-115 4-105 (226)
188 PRK14271 phosphate ABC transpo 99.9 2.2E-25 4.7E-30 166.5 12.3 96 20-116 20-125 (276)
189 PRK10771 thiQ thiamine transpo 99.9 1.9E-25 4.1E-30 162.5 11.6 92 22-115 2-95 (232)
190 PRK13652 cbiO cobalt transport 99.9 2.7E-25 5.8E-30 165.9 12.7 96 21-116 3-104 (277)
191 PRK13651 cobalt transporter AT 99.9 2.1E-25 4.5E-30 168.9 12.2 95 21-116 2-131 (305)
192 PRK14236 phosphate transporter 99.9 3.5E-25 7.6E-30 164.8 13.2 95 20-115 24-129 (272)
193 cd03252 ABCC_Hemolysin The ABC 99.9 1.2E-25 2.6E-30 163.8 10.5 94 22-116 1-100 (237)
194 cd03215 ABC_Carb_Monos_II This 99.9 2.3E-25 5E-30 157.0 11.2 91 21-115 4-102 (182)
195 PRK14253 phosphate ABC transpo 99.9 2.1E-25 4.5E-30 163.7 11.4 95 21-116 3-107 (249)
196 PRK11144 modC molybdate transp 99.9 2.1E-25 4.5E-30 171.7 11.9 93 21-116 1-101 (352)
197 TIGR02204 MsbA_rel ABC transpo 99.9 9.7E-26 2.1E-30 181.9 10.4 97 21-118 337-440 (576)
198 PRK14255 phosphate ABC transpo 99.9 3.7E-25 8.1E-30 162.6 12.6 95 20-115 4-109 (252)
199 PRK14275 phosphate ABC transpo 99.9 4.3E-25 9.2E-30 165.6 13.1 96 20-116 38-144 (286)
200 cd03245 ABCC_bacteriocin_expor 99.9 2E-25 4.3E-30 160.9 10.9 95 21-116 2-102 (220)
201 PRK13639 cbiO cobalt transport 99.9 2.6E-25 5.6E-30 165.9 11.8 95 22-116 2-104 (275)
202 COG4555 NatA ABC-type Na+ tran 99.9 2.3E-26 5E-31 164.2 5.7 96 21-116 1-100 (245)
203 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1E-25 2.2E-30 167.6 9.5 93 23-115 26-126 (269)
204 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.8E-25 6E-30 159.1 11.3 94 21-115 6-105 (207)
205 PRK15112 antimicrobial peptide 99.9 3.2E-25 7E-30 164.7 11.9 95 21-115 4-113 (267)
206 PRK14245 phosphate ABC transpo 99.9 4.1E-25 8.9E-30 162.3 12.3 96 20-116 2-108 (250)
207 cd03244 ABCC_MRP_domain2 Domai 99.9 2.2E-25 4.7E-30 160.8 10.6 93 22-115 3-101 (221)
208 COG4988 CydD ABC-type transpor 99.9 9.8E-26 2.1E-30 179.8 9.5 101 19-120 318-423 (559)
209 TIGR02324 CP_lyasePhnL phospho 99.9 2.5E-25 5.3E-30 161.0 10.8 95 21-115 1-114 (224)
210 cd03299 ABC_ModC_like Archeal 99.9 4.1E-25 8.9E-30 161.3 12.0 94 22-116 1-96 (235)
211 PRK14266 phosphate ABC transpo 99.9 4.2E-25 9.1E-30 162.2 12.1 95 20-115 2-107 (250)
212 COG1122 CbiO ABC-type cobalt t 99.9 5.5E-25 1.2E-29 161.3 12.4 96 21-117 3-106 (235)
213 cd03253 ABCC_ATM1_transporter 99.9 2.7E-25 5.8E-30 161.8 10.7 94 22-116 1-99 (236)
214 cd03250 ABCC_MRP_domain1 Domai 99.9 2.6E-25 5.6E-30 158.9 10.5 85 22-116 1-90 (204)
215 PRK14243 phosphate transporter 99.9 3.4E-25 7.4E-30 164.3 11.4 95 21-116 10-115 (264)
216 TIGR02203 MsbA_lipidA lipid A 99.9 2.4E-25 5.2E-30 179.4 11.4 96 21-117 330-431 (571)
217 PRK13642 cbiO cobalt transport 99.9 5.9E-25 1.3E-29 164.1 12.5 96 21-116 4-107 (277)
218 PRK13645 cbiO cobalt transport 99.9 5.2E-25 1.1E-29 165.2 12.2 95 21-116 6-116 (289)
219 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.1E-25 4.5E-30 162.6 9.7 94 22-116 1-101 (238)
220 cd03248 ABCC_TAP TAP, the Tran 99.9 2E-25 4.3E-30 161.7 9.2 96 20-116 10-112 (226)
221 PRK11701 phnK phosphonate C-P 99.9 6.7E-25 1.5E-29 162.0 12.1 94 21-114 6-114 (258)
222 PRK14264 phosphate ABC transpo 99.9 9.1E-25 2E-29 165.2 13.1 97 19-116 43-150 (305)
223 PRK14252 phosphate ABC transpo 99.9 7.1E-25 1.5E-29 162.5 12.2 97 19-116 14-123 (265)
224 PRK14263 phosphate ABC transpo 99.9 9.9E-25 2.2E-29 161.7 12.8 97 19-116 6-113 (261)
225 TIGR02633 xylG D-xylose ABC tr 99.9 6.7E-25 1.4E-29 174.9 12.5 95 22-116 2-103 (500)
226 PRK11308 dppF dipeptide transp 99.9 1.1E-24 2.4E-29 166.3 12.9 94 21-114 5-117 (327)
227 PRK14258 phosphate ABC transpo 99.9 1E-24 2.2E-29 161.4 12.2 94 21-115 7-111 (261)
228 TIGR02142 modC_ABC molybdenum 99.9 6.8E-25 1.5E-29 168.9 11.7 89 26-116 4-100 (354)
229 PRK14244 phosphate ABC transpo 99.9 9.1E-25 2E-29 160.6 11.8 95 20-115 4-109 (251)
230 PRK13633 cobalt transporter AT 99.9 9.3E-25 2E-29 163.2 11.9 95 21-116 4-111 (280)
231 PRK14246 phosphate ABC transpo 99.9 7.4E-25 1.6E-29 162.1 11.1 96 21-116 10-115 (257)
232 PRK10419 nikE nickel transport 99.9 1.3E-24 2.8E-29 161.6 12.1 94 21-114 3-114 (268)
233 cd03217 ABC_FeS_Assembly ABC-t 99.9 9.6E-25 2.1E-29 156.0 10.8 91 22-112 1-98 (200)
234 TIGR01846 type_I_sec_HlyB type 99.9 4.6E-25 9.9E-30 181.7 10.2 97 21-118 455-557 (694)
235 PRK10789 putative multidrug tr 99.9 8.4E-25 1.8E-29 176.9 11.5 97 21-118 313-415 (569)
236 PRK10982 galactose/methyl gala 99.9 7.3E-25 1.6E-29 174.4 11.0 93 24-116 1-98 (491)
237 cd03223 ABCD_peroxisomal_ALDP 99.9 1.1E-24 2.3E-29 151.9 10.5 85 22-114 1-86 (166)
238 TIGR01842 type_I_sec_PrtD type 99.9 1.6E-24 3.4E-29 174.4 12.8 96 21-117 316-417 (544)
239 cd03288 ABCC_SUR2 The SUR doma 99.9 1.3E-24 2.7E-29 160.6 11.1 93 21-114 19-117 (257)
240 COG4525 TauB ABC-type taurine 99.9 4.4E-25 9.6E-30 157.4 8.3 96 21-117 3-100 (259)
241 COG4619 ABC-type uncharacteriz 99.9 2.1E-26 4.6E-31 160.8 1.5 94 22-116 4-101 (223)
242 PRK11819 putative ABC transpor 99.9 1.3E-24 2.8E-29 175.5 12.0 89 20-115 5-94 (556)
243 TIGR01192 chvA glucan exporter 99.9 9.4E-25 2E-29 177.2 11.2 97 21-118 334-435 (585)
244 PRK10418 nikD nickel transport 99.9 2.3E-24 4.9E-29 158.9 12.2 94 20-114 3-104 (254)
245 COG3840 ThiQ ABC-type thiamine 99.9 3.9E-25 8.4E-30 156.0 7.7 94 22-117 2-97 (231)
246 PRK14257 phosphate ABC transpo 99.9 2.6E-24 5.7E-29 164.4 12.8 96 20-116 79-187 (329)
247 TIGR02323 CP_lyasePhnK phospho 99.9 2.1E-24 4.5E-29 158.7 11.7 94 21-114 3-111 (253)
248 PRK15093 antimicrobial peptide 99.9 2.8E-24 6.1E-29 164.2 12.8 94 21-114 3-114 (330)
249 cd03297 ABC_ModC_molybdenum_tr 99.9 1.7E-24 3.7E-29 155.7 10.9 88 26-116 5-100 (214)
250 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.3E-24 2.8E-29 162.5 10.6 92 21-114 2-99 (275)
251 COG4559 ABC-type hemin transpo 99.9 4.5E-25 9.7E-30 158.7 7.3 97 21-117 1-101 (259)
252 PTZ00265 multidrug resistance 99.9 6.4E-25 1.4E-29 192.0 9.8 98 21-119 1165-1323(1466)
253 CHL00131 ycf16 sulfate ABC tra 99.9 3.4E-24 7.3E-29 157.4 12.1 95 21-115 7-108 (252)
254 PRK09473 oppD oligopeptide tra 99.9 4.6E-24 1E-28 163.1 13.2 96 20-115 11-123 (330)
255 PRK15056 manganese/iron transp 99.9 2.7E-24 5.8E-29 160.1 11.4 94 21-114 6-103 (272)
256 cd03290 ABCC_SUR1_N The SUR do 99.9 2.4E-24 5.1E-29 155.4 10.8 93 23-116 2-103 (218)
257 PRK11022 dppD dipeptide transp 99.9 4.4E-24 9.5E-29 162.9 12.7 94 21-114 3-114 (326)
258 TIGR01166 cbiO cobalt transpor 99.9 2E-24 4.3E-29 152.9 9.8 84 31-115 2-93 (190)
259 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.6E-24 5.7E-29 173.5 11.6 88 21-115 4-92 (552)
260 PRK15064 ABC transporter ATP-b 99.9 3E-24 6.5E-29 172.4 11.5 88 21-115 1-88 (530)
261 PRK09544 znuC high-affinity zi 99.9 5.9E-24 1.3E-28 156.9 11.7 87 21-114 4-92 (251)
262 cd03267 ABC_NatA_like Similar 99.9 3.1E-24 6.7E-29 156.8 10.0 87 29-115 29-119 (236)
263 PRK10261 glutathione transport 99.9 6E-24 1.3E-28 173.7 12.8 96 20-115 312-427 (623)
264 TIGR03415 ABC_choXWV_ATP choli 99.9 1.9E-24 4.1E-29 168.0 8.9 91 26-116 29-131 (382)
265 COG4604 CeuD ABC-type enteroch 99.9 2.8E-25 6E-30 158.5 3.6 97 21-117 1-101 (252)
266 PRK10261 glutathione transport 99.9 7.9E-24 1.7E-28 173.0 12.5 96 21-116 12-131 (623)
267 PRK09580 sufC cysteine desulfu 99.9 6.1E-24 1.3E-28 155.6 10.5 92 21-112 1-99 (248)
268 COG4181 Predicted ABC-type tra 99.9 2.6E-24 5.7E-29 150.8 8.0 96 21-116 6-113 (228)
269 PLN03130 ABC transporter C fam 99.9 3.4E-24 7.3E-29 188.8 10.5 95 21-116 1237-1337(1622)
270 PLN03211 ABC transporter G-25; 99.9 4.2E-24 9.1E-29 175.5 10.0 89 28-116 75-165 (659)
271 PLN03232 ABC transporter C fam 99.9 3.1E-24 6.7E-29 188.2 9.6 95 21-116 1234-1334(1495)
272 KOG0055|consensus 99.9 2.5E-24 5.5E-29 182.7 8.3 99 21-120 350-455 (1228)
273 TIGR03269 met_CoM_red_A2 methy 99.9 9.9E-24 2.1E-28 169.0 11.3 96 20-115 278-389 (520)
274 COG4987 CydC ABC-type transpor 99.9 1.8E-24 4E-29 171.3 6.8 100 21-121 336-441 (573)
275 TIGR02633 xylG D-xylose ABC tr 99.9 6.3E-24 1.4E-28 169.3 9.6 96 20-115 256-363 (500)
276 PRK09700 D-allose transporter 99.9 7.4E-24 1.6E-28 169.3 9.9 94 20-115 264-365 (510)
277 COG4136 ABC-type uncharacteriz 99.9 7.6E-24 1.6E-28 146.0 8.3 97 21-117 2-103 (213)
278 PRK13549 xylose transporter AT 99.9 8.9E-24 1.9E-28 168.8 9.7 96 20-115 258-365 (506)
279 cd03216 ABC_Carb_Monos_I This 99.9 2.6E-23 5.6E-28 144.5 10.8 77 22-98 1-82 (163)
280 PTZ00243 ABC transporter; Prov 99.9 1.2E-23 2.5E-28 185.0 11.2 94 21-115 1308-1407(1560)
281 TIGR00957 MRP_assoc_pro multi 99.9 6.6E-24 1.4E-28 186.4 9.6 92 21-113 1284-1381(1522)
282 TIGR03269 met_CoM_red_A2 methy 99.9 1.7E-23 3.6E-28 167.6 11.0 95 22-116 1-135 (520)
283 PRK10522 multidrug transporter 99.9 1E-23 2.2E-28 169.9 9.4 90 21-111 322-416 (547)
284 PRK15134 microcin C ABC transp 99.9 1.8E-23 3.9E-28 167.9 10.4 95 20-115 274-388 (529)
285 KOG0056|consensus 99.9 5.8E-24 1.3E-28 167.9 6.7 99 21-120 537-640 (790)
286 cd03291 ABCC_CFTR1 The CFTR su 99.9 9.7E-23 2.1E-27 152.9 12.7 86 19-116 37-122 (282)
287 TIGR01257 rim_protein retinal- 99.9 5.4E-23 1.2E-27 183.0 13.1 96 20-115 1936-2036(2272)
288 PRK15134 microcin C ABC transp 99.9 5.5E-23 1.2E-27 165.0 11.9 94 21-114 5-117 (529)
289 PRK11819 putative ABC transpor 99.9 5.4E-23 1.2E-27 166.1 11.8 90 20-116 323-413 (556)
290 TIGR01257 rim_protein retinal- 99.9 9.5E-23 2.1E-27 181.5 13.8 97 20-116 927-1028(2272)
291 PRK03695 vitamin B12-transport 99.9 3.3E-23 7.2E-28 152.4 8.8 89 23-116 2-94 (248)
292 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.8E-23 1.7E-27 165.0 11.6 90 20-116 321-411 (552)
293 COG4598 HisP ABC-type histidin 99.9 2.4E-24 5.1E-29 152.3 2.4 95 21-115 6-117 (256)
294 PRK10938 putative molybdenum t 99.9 3.2E-23 7E-28 164.9 9.1 94 21-114 3-108 (490)
295 PTZ00265 multidrug resistance 99.9 2.5E-23 5.5E-28 182.1 9.3 95 21-116 382-484 (1466)
296 PRK15064 ABC transporter ATP-b 99.9 8.8E-23 1.9E-27 163.9 11.5 88 20-114 318-407 (530)
297 PRK10535 macrolide transporter 99.9 1.5E-22 3.2E-27 166.2 12.9 95 21-115 4-110 (648)
298 PRK11147 ABC transporter ATPas 99.9 1.1E-22 2.5E-27 166.4 12.2 90 20-116 318-408 (635)
299 COG4175 ProV ABC-type proline/ 99.9 2.9E-23 6.2E-28 156.6 7.6 98 20-117 3-132 (386)
300 TIGR00956 3a01205 Pleiotropic 99.9 1E-22 2.2E-27 177.8 12.2 96 21-116 759-861 (1394)
301 COG4133 CcmA ABC-type transpor 99.9 1.3E-23 2.7E-28 148.5 5.0 96 21-116 2-100 (209)
302 TIGR01194 cyc_pep_trnsptr cycl 99.9 5.1E-23 1.1E-27 166.2 9.0 91 21-112 337-436 (555)
303 TIGR01271 CFTR_protein cystic 99.9 1.5E-22 3.3E-27 177.5 11.8 93 21-115 1217-1315(1490)
304 KOG0055|consensus 99.9 5.3E-23 1.2E-27 174.7 8.5 98 21-119 987-1091(1228)
305 COG1123 ATPase components of v 99.9 2.9E-22 6.2E-27 160.1 11.7 97 20-116 279-394 (539)
306 TIGR01184 ntrCD nitrate transp 99.9 1.7E-22 3.6E-27 147.1 9.2 78 37-115 1-78 (230)
307 PF00005 ABC_tran: ABC transpo 99.9 6.9E-23 1.5E-27 137.5 6.6 75 37-111 1-79 (137)
308 cd03214 ABC_Iron-Siderophores_ 99.9 6.8E-23 1.5E-27 144.2 6.7 76 23-98 1-80 (180)
309 COG4618 ArpD ABC-type protease 99.9 2.2E-22 4.8E-27 158.9 9.9 98 20-118 333-436 (580)
310 COG4674 Uncharacterized ABC-ty 99.9 7.4E-23 1.6E-27 145.9 6.3 98 20-117 4-107 (249)
311 PRK10938 putative molybdenum t 99.9 2.3E-22 4.9E-27 160.1 9.3 95 20-114 259-361 (490)
312 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.8E-22 3.9E-27 146.6 7.7 87 22-116 23-109 (224)
313 PRK10762 D-ribose transporter 99.9 3.2E-22 7E-27 159.7 9.7 91 20-115 256-354 (501)
314 TIGR00954 3a01203 Peroxysomal 99.9 6.4E-22 1.4E-26 162.7 11.3 88 21-116 451-539 (659)
315 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 6.8E-22 1.5E-26 135.0 9.5 70 22-98 1-70 (144)
316 COG0396 sufC Cysteine desulfur 99.9 6.3E-22 1.4E-26 143.6 9.7 97 20-116 2-106 (251)
317 TIGR02770 nickel_nikD nickel i 99.9 5.1E-22 1.1E-26 144.4 9.2 80 36-115 1-88 (230)
318 COG1119 ModF ABC-type molybden 99.9 2.1E-22 4.6E-27 147.1 5.6 98 19-116 29-133 (257)
319 PRK11288 araG L-arabinose tran 99.9 6.3E-22 1.4E-26 158.1 8.9 91 21-115 257-355 (501)
320 TIGR00955 3a01204 The Eye Pigm 99.9 1.2E-21 2.6E-26 160.0 9.0 84 33-116 37-124 (617)
321 COG4161 ArtP ABC-type arginine 99.9 5.5E-22 1.2E-26 138.4 5.7 95 21-115 2-106 (242)
322 PRK10636 putative ABC transpor 99.9 2.8E-21 6.1E-26 158.4 10.8 84 21-112 1-84 (638)
323 COG4167 SapF ABC-type antimicr 99.9 7.5E-22 1.6E-26 140.0 6.3 96 21-116 4-114 (267)
324 COG0488 Uup ATPase components 99.9 2.4E-21 5.3E-26 155.7 9.8 91 20-117 2-92 (530)
325 PRK10982 galactose/methyl gala 99.9 2E-21 4.4E-26 154.7 9.0 90 20-111 249-346 (491)
326 PRK13546 teichoic acids export 99.9 1.1E-20 2.3E-25 140.6 11.9 87 20-115 3-109 (264)
327 COG1101 PhnK ABC-type uncharac 99.8 5.1E-22 1.1E-26 143.2 4.4 96 22-117 2-108 (263)
328 PRK10636 putative ABC transpor 99.8 7.3E-21 1.6E-25 156.0 11.5 87 20-113 311-399 (638)
329 COG4148 ModC ABC-type molybdat 99.8 1.3E-21 2.7E-26 145.8 6.2 83 36-118 13-103 (352)
330 PLN03140 ABC transporter G fam 99.8 8.1E-21 1.8E-25 166.3 12.2 97 20-116 866-978 (1470)
331 PRK11147 ABC transporter ATPas 99.8 1.1E-20 2.4E-25 154.8 11.5 85 21-112 3-87 (635)
332 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.3E-20 2.8E-25 129.7 10.1 75 24-98 2-80 (157)
333 PRK15439 autoinducer 2 ABC tra 99.8 5.8E-21 1.3E-25 152.9 9.4 90 20-114 267-364 (510)
334 PRK13409 putative ATPase RIL; 99.8 1E-20 2.2E-25 154.0 10.9 86 20-115 339-424 (590)
335 COG0444 DppD ABC-type dipeptid 99.8 1.6E-20 3.6E-25 141.6 10.4 95 22-116 2-115 (316)
336 KOG0054|consensus 99.8 8.1E-21 1.8E-25 163.9 9.5 93 20-113 1137-1235(1381)
337 PRK13545 tagH teichoic acids e 99.8 3.4E-20 7.4E-25 148.6 12.2 86 21-115 21-109 (549)
338 COG1134 TagH ABC-type polysacc 99.8 6.9E-21 1.5E-25 139.1 7.4 73 34-115 40-113 (249)
339 KOG0061|consensus 99.8 2.7E-20 5.8E-25 152.1 11.2 98 19-116 23-129 (613)
340 TIGR00957 MRP_assoc_pro multi 99.8 2.3E-20 5E-25 164.2 11.3 86 21-116 636-723 (1522)
341 PLN03130 ABC transporter C fam 99.8 1.3E-20 2.9E-25 166.3 9.8 87 21-117 614-704 (1622)
342 PLN03232 ABC transporter C fam 99.8 1.3E-20 2.9E-25 165.5 9.6 88 21-117 614-704 (1495)
343 cd03222 ABC_RNaseL_inhibitor T 99.8 2.1E-20 4.5E-25 132.0 8.7 68 25-101 4-71 (177)
344 COG5265 ATM1 ABC-type transpor 99.8 7.2E-21 1.6E-25 147.8 6.2 99 21-120 262-365 (497)
345 PRK15177 Vi polysaccharide exp 99.8 2E-20 4.3E-25 135.1 7.9 73 35-116 1-74 (213)
346 COG1123 ATPase components of v 99.8 4.9E-20 1.1E-24 147.3 10.8 95 21-115 5-117 (539)
347 PLN03140 ABC transporter G fam 99.8 2E-20 4.4E-25 163.8 9.3 83 34-116 178-264 (1470)
348 cd03237 ABC_RNaseL_inhibitor_d 99.8 4.4E-20 9.6E-25 136.0 8.6 73 35-115 8-85 (246)
349 PLN03073 ABC transporter F fam 99.8 9.3E-20 2E-24 151.1 11.1 83 20-111 507-590 (718)
350 TIGR03771 anch_rpt_ABC anchore 99.8 4.1E-20 8.9E-25 134.0 7.7 73 42-115 1-75 (223)
351 TIGR00956 3a01205 Pleiotropic 99.8 7E-20 1.5E-24 160.2 9.5 83 34-116 74-163 (1394)
352 TIGR01271 CFTR_protein cystic 99.8 2.2E-19 4.9E-24 157.8 11.2 74 34-117 439-512 (1490)
353 cd03236 ABC_RNaseL_inhibitor_d 99.8 5.3E-20 1.1E-24 136.3 5.9 89 25-115 4-110 (255)
354 COG4172 ABC-type uncharacteriz 99.8 1.2E-18 2.6E-23 135.3 10.8 99 18-117 273-391 (534)
355 COG4608 AppF ABC-type oligopep 99.8 8.6E-19 1.9E-23 129.8 8.0 67 20-86 3-78 (268)
356 KOG0059|consensus 99.8 3.7E-19 8.1E-24 150.3 6.6 96 21-116 564-665 (885)
357 cd00820 PEPCK_HprK Phosphoenol 99.8 9.7E-19 2.1E-23 114.2 6.9 72 34-114 2-77 (107)
358 COG0488 Uup ATPase components 99.8 4.9E-18 1.1E-22 136.6 10.4 92 19-117 319-412 (530)
359 TIGR01187 potA spermidine/putr 99.8 2E-18 4.3E-23 131.7 7.0 65 52-116 1-67 (325)
360 PTZ00243 ABC transporter; Prov 99.7 4.8E-18 1E-22 149.9 9.9 76 31-116 670-745 (1560)
361 COG4586 ABC-type uncharacteriz 99.7 3.8E-19 8.2E-24 132.1 2.3 78 35-112 38-119 (325)
362 PRK13409 putative ATPase RIL; 99.7 1.1E-18 2.3E-23 142.2 4.9 89 25-114 77-186 (590)
363 COG4615 PvdE ABC-type sideroph 99.7 1.5E-18 3.3E-23 134.5 5.2 86 21-106 322-412 (546)
364 COG4107 PhnK ABC-type phosphon 99.7 6.3E-18 1.4E-22 119.3 5.2 81 21-101 6-99 (258)
365 KOG0054|consensus 99.7 4.3E-17 9.4E-22 141.1 10.8 90 19-118 516-608 (1381)
366 PLN03073 ABC transporter F fam 99.7 3E-17 6.4E-22 136.3 8.2 66 19-84 175-243 (718)
367 COG4778 PhnL ABC-type phosphon 99.7 1.5E-17 3.2E-22 116.9 4.7 95 20-114 3-116 (235)
368 KOG0065|consensus 99.7 8.3E-17 1.8E-21 137.9 7.2 95 22-116 788-889 (1391)
369 cd03238 ABC_UvrA The excision 99.7 1.2E-16 2.5E-21 112.8 6.3 60 34-98 8-67 (176)
370 COG4172 ABC-type uncharacteriz 99.7 3.5E-16 7.5E-21 121.7 7.9 95 21-115 6-119 (534)
371 COG4138 BtuD ABC-type cobalami 99.6 7.9E-16 1.7E-20 108.7 3.7 92 21-117 3-98 (248)
372 COG4178 ABC-type uncharacteriz 99.6 9.6E-15 2.1E-19 118.4 9.9 91 20-118 391-482 (604)
373 KOG0060|consensus 99.5 7.3E-14 1.6E-18 112.3 10.5 95 18-117 430-526 (659)
374 cd03278 ABC_SMC_barmotin Barmo 99.5 6.9E-15 1.5E-19 105.2 4.1 65 38-103 14-88 (197)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.5 5.9E-14 1.3E-18 102.5 4.6 85 22-112 4-120 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.5 4.1E-15 8.9E-20 107.5 -1.5 78 21-114 5-82 (212)
377 COG3845 ABC-type uncharacteriz 99.5 1.3E-12 2.8E-17 103.4 11.9 99 19-117 255-363 (501)
378 TIGR03238 dnd_assoc_3 dnd syst 99.4 1E-13 2.2E-18 110.2 4.8 65 34-100 19-87 (504)
379 KOG0064|consensus 99.4 4.4E-13 9.6E-18 107.3 5.9 88 21-116 481-569 (728)
380 KOG2355|consensus 99.4 1.2E-12 2.6E-17 94.7 7.1 67 19-85 11-78 (291)
381 KOG0927|consensus 99.4 4E-13 8.7E-18 107.4 3.4 88 21-115 389-479 (614)
382 cd03283 ABC_MutS-like MutS-lik 99.3 1.6E-13 3.4E-18 98.4 0.3 73 33-117 13-85 (199)
383 KOG0066|consensus 99.3 1.9E-12 4.1E-17 102.4 5.5 87 20-113 585-674 (807)
384 cd03273 ABC_SMC2_euk Eukaryoti 99.3 3.3E-13 7.1E-18 99.4 1.2 88 22-115 6-110 (251)
385 COG1129 MglA ABC-type sugar tr 99.3 7.4E-12 1.6E-16 100.0 8.7 93 19-115 261-361 (500)
386 cd01130 VirB11-like_ATPase Typ 99.3 2.2E-11 4.9E-16 86.1 8.1 80 38-117 16-98 (186)
387 cd03240 ABC_Rad50 The catalyti 99.3 1.8E-12 3.8E-17 93.2 2.5 74 41-115 17-100 (204)
388 PRK06002 fliI flagellum-specif 99.3 2.2E-11 4.8E-16 96.5 8.6 79 21-100 139-229 (450)
389 cd03270 ABC_UvrA_I The excisio 99.3 3.7E-12 8E-17 92.7 3.8 35 30-64 4-38 (226)
390 KOG0927|consensus 99.3 1.2E-11 2.6E-16 99.1 6.5 56 21-76 75-130 (614)
391 PRK07196 fliI flagellum-specif 99.2 8.7E-12 1.9E-16 98.5 4.9 82 34-116 143-237 (434)
392 TIGR02858 spore_III_AA stage I 99.2 1E-11 2.3E-16 92.9 4.1 63 48-111 112-179 (270)
393 cd03279 ABC_sbcCD SbcCD and ot 99.2 1.4E-11 3.1E-16 88.8 4.4 77 21-101 5-86 (213)
394 KOG0062|consensus 99.2 1.4E-11 3E-16 98.2 4.2 50 20-69 79-128 (582)
395 KOG0065|consensus 99.2 1.8E-11 3.9E-16 105.7 4.9 84 34-117 128-215 (1391)
396 COG4170 SapD ABC-type antimicr 99.2 3.4E-11 7.4E-16 87.7 4.8 92 22-113 4-113 (330)
397 COG1245 Predicted ATPase, RNas 99.2 1.1E-10 2.3E-15 92.5 7.6 86 20-116 341-426 (591)
398 PRK09825 idnK D-gluconate kina 99.1 3.3E-11 7.2E-16 84.9 3.0 67 46-116 2-71 (176)
399 COG2401 ABC-type ATPase fused 99.1 8.1E-11 1.8E-15 92.5 3.9 48 34-81 396-451 (593)
400 cd03280 ABC_MutS2 MutS2 homolo 99.0 5E-10 1.1E-14 80.0 5.3 41 35-75 15-64 (200)
401 PRK08149 ATP synthase SpaL; Va 99.0 1.2E-09 2.6E-14 86.3 7.4 67 33-100 138-215 (428)
402 PRK09270 nucleoside triphospha 99.0 6.1E-10 1.3E-14 81.1 4.9 70 44-114 30-103 (229)
403 PRK07721 fliI flagellum-specif 99.0 1.1E-09 2.5E-14 86.8 6.8 66 33-99 145-222 (438)
404 cd03271 ABC_UvrA_II The excisi 99.0 6E-10 1.3E-14 83.1 4.5 33 35-67 9-41 (261)
405 cd03284 ABC_MutS1 MutS1 homolo 99.0 5.9E-10 1.3E-14 80.8 4.2 74 33-116 17-90 (216)
406 PRK09862 putative ATP-dependen 99.0 6.5E-10 1.4E-14 89.5 4.6 62 24-85 187-248 (506)
407 PRK10078 ribose 1,5-bisphospho 99.0 1E-09 2.2E-14 77.5 4.9 50 47-99 2-55 (186)
408 PRK01889 GTPase RsgA; Reviewed 98.9 1.3E-09 2.8E-14 84.4 5.5 77 37-114 185-262 (356)
409 cd03282 ABC_MSH4_euk MutS4 hom 98.9 1.1E-09 2.4E-14 78.9 4.5 38 32-69 14-51 (204)
410 TIGR00235 udk uridine kinase. 98.9 2.8E-10 6.2E-15 81.6 1.5 68 45-112 4-75 (207)
411 PRK10416 signal recognition pa 98.9 1.4E-09 2.9E-14 83.2 4.6 72 45-116 112-193 (318)
412 TIGR00554 panK_bact pantothena 98.9 1.7E-09 3.6E-14 81.8 4.2 69 45-114 60-133 (290)
413 PRK07594 type III secretion sy 98.9 2.6E-09 5.7E-14 84.5 5.1 62 22-84 130-192 (433)
414 PF13555 AAA_29: P-loop contai 98.9 1.7E-09 3.6E-14 64.1 2.6 39 37-75 12-51 (62)
415 cd01136 ATPase_flagellum-secre 98.9 5.3E-09 1.1E-13 80.2 6.0 55 28-83 50-105 (326)
416 TIGR00767 rho transcription te 98.9 6.2E-09 1.3E-13 81.7 6.4 52 21-72 130-193 (415)
417 cd03243 ABC_MutS_homologs The 98.8 3.4E-09 7.3E-14 75.8 4.4 33 37-69 19-51 (202)
418 TIGR02546 III_secr_ATP type II 98.8 6.5E-09 1.4E-13 82.2 6.4 73 33-106 132-214 (422)
419 TIGR02322 phosphon_PhnN phosph 98.8 1.4E-08 3.1E-13 70.8 7.4 62 47-109 1-82 (179)
420 cd03287 ABC_MSH3_euk MutS3 hom 98.8 3.9E-09 8.6E-14 77.0 4.3 48 33-80 17-65 (222)
421 cd03275 ABC_SMC1_euk Eukaryoti 98.8 4.9E-09 1.1E-13 77.1 4.7 54 21-81 3-56 (247)
422 PRK07960 fliI flagellum-specif 98.8 7.4E-09 1.6E-13 82.3 5.7 65 36-101 165-239 (455)
423 PRK03846 adenylylsulfate kinas 98.8 3.4E-09 7.3E-14 75.6 3.3 56 45-100 22-78 (198)
424 PRK00300 gmk guanylate kinase; 98.8 4.3E-09 9.3E-14 74.9 3.7 28 45-72 3-30 (205)
425 PRK09099 type III secretion sy 98.8 1E-08 2.2E-13 81.5 5.6 52 33-85 150-201 (441)
426 PRK00635 excinuclease ABC subu 98.8 6.9E-09 1.5E-13 92.9 4.8 57 22-82 936-992 (1809)
427 PRK06995 flhF flagellar biosyn 98.8 4.8E-09 1E-13 84.1 3.4 63 36-114 245-307 (484)
428 TIGR03498 FliI_clade3 flagella 98.8 1.6E-08 3.6E-13 79.8 6.0 52 34-86 128-179 (418)
429 PLN02318 phosphoribulokinase/u 98.8 8.6E-09 1.9E-13 84.3 4.5 63 48-114 66-128 (656)
430 TIGR01026 fliI_yscN ATPase Fli 98.7 1.6E-08 3.4E-13 80.4 5.2 50 34-84 151-200 (440)
431 TIGR03497 FliI_clade2 flagella 98.7 2.8E-08 6E-13 78.5 6.2 52 33-85 124-175 (413)
432 cd02025 PanK Pantothenate kina 98.7 1.1E-08 2.4E-13 74.4 3.7 32 49-80 1-34 (220)
433 TIGR02788 VirB11 P-type DNA tr 98.7 8E-09 1.7E-13 78.5 3.0 77 40-116 137-215 (308)
434 cd03285 ABC_MSH2_euk MutS2 hom 98.7 2.9E-08 6.3E-13 72.3 5.3 37 32-68 15-51 (222)
435 cd01854 YjeQ_engC YjeQ/EngC. 98.7 4.1E-08 8.9E-13 74.0 5.9 74 39-113 154-238 (287)
436 PRK00098 GTPase RsgA; Reviewed 98.7 6.3E-08 1.4E-12 73.4 6.7 66 46-111 163-239 (298)
437 TIGR00630 uvra excinuclease AB 98.7 2.3E-08 5.1E-13 85.4 4.7 40 21-65 612-651 (924)
438 TIGR00606 rad50 rad50. This fa 98.7 7.6E-08 1.6E-12 84.9 7.8 73 21-98 5-86 (1311)
439 PRK06315 type III secretion sy 98.7 2.7E-08 5.9E-13 79.0 4.5 48 34-82 152-200 (442)
440 TIGR03496 FliI_clade1 flagella 98.7 5E-08 1.1E-12 77.0 5.8 60 24-84 114-174 (411)
441 PLN02796 D-glycerate 3-kinase 98.6 5.6E-09 1.2E-13 80.5 0.5 52 35-86 80-142 (347)
442 cd03281 ABC_MSH5_euk MutS5 hom 98.6 6.1E-08 1.3E-12 70.2 5.6 44 35-79 17-62 (213)
443 PRK05922 type III secretion sy 98.6 6E-08 1.3E-12 76.9 5.8 49 34-83 145-193 (434)
444 KOG0066|consensus 98.6 6.9E-08 1.5E-12 76.9 5.9 66 20-85 263-330 (807)
445 PRK06793 fliI flagellum-specif 98.6 7.1E-08 1.5E-12 76.5 6.0 62 22-84 131-193 (432)
446 PRK05688 fliI flagellum-specif 98.6 4E-08 8.7E-13 78.2 4.6 52 33-85 155-209 (451)
447 PRK04863 mukB cell division pr 98.6 7.5E-08 1.6E-12 85.5 6.6 47 37-84 18-64 (1486)
448 PRK13477 bifunctional pantoate 98.6 7.6E-08 1.7E-12 77.7 5.9 52 27-79 265-319 (512)
449 TIGR01360 aden_kin_iso1 adenyl 98.6 2E-09 4.4E-14 75.2 -3.2 34 46-79 2-38 (188)
450 TIGR03263 guanyl_kin guanylate 98.6 8.5E-08 1.9E-12 66.8 4.9 26 47-72 1-26 (180)
451 PRK11545 gntK gluconate kinase 98.6 8.2E-09 1.8E-13 71.7 -0.3 60 53-116 1-63 (163)
452 PRK00635 excinuclease ABC subu 98.6 7E-08 1.5E-12 86.6 5.1 40 21-65 600-639 (1809)
453 PRK08472 fliI flagellum-specif 98.6 6.5E-08 1.4E-12 76.7 4.5 52 33-85 144-195 (434)
454 TIGR02524 dot_icm_DotB Dot/Icm 98.6 1.4E-07 3E-12 73.3 6.2 56 45-100 132-193 (358)
455 TIGR00368 Mg chelatase-related 98.6 3.9E-08 8.5E-13 79.3 2.9 55 31-85 195-249 (499)
456 PRK08972 fliI flagellum-specif 98.6 9.1E-08 2E-12 75.9 4.8 40 34-74 150-189 (444)
457 KOG0062|consensus 98.5 6.2E-08 1.3E-12 77.7 3.6 75 19-100 360-436 (582)
458 PF13476 AAA_23: AAA domain; P 98.5 8.6E-08 1.9E-12 67.0 4.0 33 37-70 10-42 (202)
459 cd02026 PRK Phosphoribulokinas 98.5 7.6E-08 1.7E-12 72.2 3.9 51 49-100 1-54 (273)
460 PRK00349 uvrA excinuclease ABC 98.5 8.7E-08 1.9E-12 82.1 4.7 43 21-68 614-656 (943)
461 cd00879 Sar1 Sar1 subfamily. 98.5 8E-08 1.7E-12 67.2 3.5 49 36-85 9-65 (190)
462 PRK05480 uridine/cytidine kina 98.5 1.7E-07 3.6E-12 67.1 4.9 27 45-71 4-30 (209)
463 cd01131 PilT Pilus retraction 98.5 3.8E-07 8.2E-12 65.2 6.6 50 49-98 3-53 (198)
464 cd03276 ABC_SMC6_euk Eukaryoti 98.5 2.2E-07 4.7E-12 66.5 5.1 66 37-104 12-82 (198)
465 cd02023 UMPK Uridine monophosp 98.5 7.5E-08 1.6E-12 68.3 2.7 23 49-71 1-23 (198)
466 PRK06936 type III secretion sy 98.5 2.1E-07 4.6E-12 73.9 5.4 41 34-75 150-190 (439)
467 cd04155 Arl3 Arl3 subfamily. 98.5 2.9E-07 6.4E-12 63.1 5.1 38 48-85 15-60 (173)
468 PRK06820 type III secretion sy 98.5 3.4E-07 7.3E-12 72.8 5.8 44 34-78 151-194 (440)
469 PRK14723 flhF flagellar biosyn 98.5 9.6E-08 2.1E-12 80.1 2.7 46 36-81 174-221 (767)
470 TIGR00101 ureG urease accessor 98.4 1.7E-07 3.7E-12 67.2 3.4 51 49-100 3-57 (199)
471 PRK00889 adenylylsulfate kinas 98.4 1.1E-07 2.3E-12 66.3 2.1 40 45-84 2-42 (175)
472 cd03286 ABC_MSH6_euk MutS6 hom 98.4 3.8E-07 8.3E-12 66.4 5.0 39 32-70 15-53 (218)
473 PRK08533 flagellar accessory p 98.4 3.7E-07 8E-12 66.8 4.6 54 21-83 7-61 (230)
474 TIGR02168 SMC_prok_B chromosom 98.4 4.2E-07 9.2E-12 78.2 5.1 71 22-99 5-85 (1179)
475 TIGR01069 mutS2 MutS2 family p 98.4 1.8E-07 3.8E-12 78.9 2.5 55 22-76 296-352 (771)
476 smart00382 AAA ATPases associa 98.4 1.1E-06 2.4E-11 56.8 5.5 38 46-83 1-39 (148)
477 cd04104 p47_IIGP_like p47 (47- 98.3 4.9E-07 1.1E-11 64.3 3.8 33 49-81 3-35 (197)
478 PRK15494 era GTPase Era; Provi 98.3 3.5E-07 7.6E-12 70.4 3.2 50 21-70 18-75 (339)
479 PRK14721 flhF flagellar biosyn 98.3 3.4E-07 7.3E-12 72.5 3.1 27 44-70 188-214 (420)
480 PRK10246 exonuclease subunit S 98.3 9.9E-07 2.1E-11 76.6 6.1 47 19-69 3-52 (1047)
481 PF03193 DUF258: Protein of un 98.3 5.6E-07 1.2E-11 62.8 3.8 34 46-79 34-67 (161)
482 TIGR03185 DNA_S_dndD DNA sulfu 98.3 1.2E-06 2.5E-11 72.7 6.1 44 21-68 5-49 (650)
483 PLN03046 D-glycerate 3-kinase; 98.3 5.9E-07 1.3E-11 71.1 4.0 39 48-86 213-254 (460)
484 TIGR00455 apsK adenylylsulfate 98.3 1.7E-07 3.7E-12 65.8 0.8 43 43-85 14-57 (184)
485 cd03227 ABC_Class2 ABC-type Cl 98.3 9.3E-07 2E-11 61.2 4.4 34 37-70 11-44 (162)
486 TIGR01420 pilT_fam pilus retra 98.3 2.6E-06 5.6E-11 65.7 7.1 41 45-85 120-161 (343)
487 COG1245 Predicted ATPase, RNas 98.3 5.6E-07 1.2E-11 71.7 3.5 51 26-77 79-130 (591)
488 PRK06731 flhF flagellar biosyn 98.3 5.1E-07 1.1E-11 67.7 3.1 63 22-84 41-115 (270)
489 TIGR00750 lao LAO/AO transport 98.3 3E-07 6.5E-12 69.6 1.5 45 34-78 21-65 (300)
490 cd03241 ABC_RecN RecN ATPase i 98.3 1.8E-06 4E-11 64.5 5.5 33 36-69 11-43 (276)
491 PRK10463 hydrogenase nickel in 98.3 1.2E-06 2.7E-11 66.2 4.4 43 42-84 99-141 (290)
492 cd04159 Arl10_like Arl10-like 98.2 6.9E-07 1.5E-11 59.5 2.7 21 50-70 2-22 (159)
493 PRK08927 fliI flagellum-specif 98.2 1.4E-06 3.1E-11 69.2 4.9 39 37-75 148-186 (442)
494 PRK10751 molybdopterin-guanine 98.2 1E-06 2.2E-11 62.2 3.5 36 48-83 7-45 (173)
495 cd01128 rho_factor Transcripti 98.2 1.4E-06 3E-11 64.6 4.2 33 42-74 11-43 (249)
496 PRK14722 flhF flagellar biosyn 98.2 6.9E-07 1.5E-11 69.8 2.6 37 35-71 125-161 (374)
497 PRK13851 type IV secretion sys 98.2 1.4E-06 3.1E-11 67.3 4.3 39 44-82 159-197 (344)
498 TIGR00618 sbcc exonuclease Sbc 98.2 1.7E-06 3.8E-11 75.0 5.1 44 20-68 4-47 (1042)
499 PLN02165 adenylate isopentenyl 98.2 1.3E-06 2.7E-11 67.3 3.7 42 45-86 41-86 (334)
500 PRK07429 phosphoribulokinase; 98.2 1.6E-06 3.4E-11 66.7 4.2 32 48-79 9-40 (327)
No 1
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-33 Score=213.68 Aligned_cols=98 Identities=34% Similarity=0.536 Sum_probs=93.4
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL 97 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~ 97 (121)
..++++++++.|++..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++.. ..+|.+++||
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 35899999999999999999999999999999999999999999999999999999999999999974 4578899999
Q ss_pred eCCCCCCCCCHHHHHhhccc
Q psy16345 98 QQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|+.+|||+|||+||+.|++.
T Consensus 84 Q~YALFPHltV~~NVafGLk 103 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLK 103 (352)
T ss_pred cCcccCCCCcHHHHhhhhhh
Confidence 99999999999999999986
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-33 Score=199.02 Aligned_cols=96 Identities=35% Similarity=0.604 Sum_probs=90.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~~ 95 (121)
+|+++|++++||+..+|++||+++.+||+++|+||||||||||||||.+|..|++|+|.++|.++. ..+|+++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 589999999999999999999999999999999999999999999999999999999999998764 257889999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|||+++|||++||.||+.++.
T Consensus 82 VFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred ecccccccccchHHHHHHhhh
Confidence 999999999999999999875
No 3
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=208.91 Aligned_cols=98 Identities=31% Similarity=0.539 Sum_probs=92.4
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL 97 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~ 97 (121)
.+|+++|+++.|++..+++++||+|++||+++|+||||||||||||+|+||+.|++|+|.++|++++. ...|.++|||
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 46899999999988659999999999999999999999999999999999999999999999999974 4578899999
Q ss_pred eCCCCCCCCCHHHHHhhccc
Q psy16345 98 QQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|+..|||+|||+||+.|++.
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk 101 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLK 101 (338)
T ss_pred CCccccCCCcHHHHhhhhhh
Confidence 99999999999999999985
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-31 Score=194.65 Aligned_cols=96 Identities=34% Similarity=0.566 Sum_probs=91.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
.++++++++.|+...+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|+++ ......++||||++
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-TGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-CCCCCCEEEEeccC
Confidence 58899999999999999999999999999999999999999999999999999999999999998 44567899999999
Q ss_pred CCCCCCCHHHHHhhccc
Q psy16345 101 IFFPELTLRQTLEVSIA 117 (121)
Q Consensus 101 ~l~~~ltv~e~l~~~~~ 117 (121)
.|+|++||+||+.+++.
T Consensus 82 ~LlPW~Tv~~NV~l~l~ 98 (248)
T COG1116 82 ALLPWLTVLDNVALGLE 98 (248)
T ss_pred cccchhhHHhhheehhh
Confidence 99999999999999875
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=3.9e-31 Score=194.18 Aligned_cols=95 Identities=33% Similarity=0.548 Sum_probs=90.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v 96 (121)
||+++|+++.|+++.+++++||+|++||+++++|||||||||+||+|.+|+.|++|+|+++|+++.. .+|++||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 4899999999999999999999999999999999999999999999999999999999999999863 689999999
Q ss_pred eeCCCCCCCCCHHHHHhhc
Q psy16345 97 LQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~ 115 (121)
-|...|||++||.||+.+-
T Consensus 81 iQqigLFPh~Tv~eNIa~V 99 (309)
T COG1125 81 IQQIGLFPHLTVAENIATV 99 (309)
T ss_pred hhhcccCCCccHHHHHHhh
Confidence 9999999999999999864
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=2e-30 Score=188.75 Aligned_cols=100 Identities=28% Similarity=0.491 Sum_probs=93.5
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK 92 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~ 92 (121)
..|++++++++||++.++++++|+|++||+++|+|+||||||||||+|.|+++|++|+|+++|+++.+ ..+++
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 45999999999999999999999999999999999999999999999999999999999999999852 46889
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVSIADE 119 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~~~~~ 119 (121)
+|++||+-+||..+||+||+.|.+.++
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~ 113 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREH 113 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhh
Confidence 999999999999999999999977543
No 7
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-30 Score=187.15 Aligned_cols=97 Identities=33% Similarity=0.516 Sum_probs=91.3
Q ss_pred cEEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-------hhhcc
Q psy16345 20 LELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------KRWKR 91 (121)
Q Consensus 20 ~~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-------~~~~~ 91 (121)
++|+++||++.| +++++|++|||+|++||+++|||+||||||||||+|.|+.+|++|+|.++|.++. +.+|+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 469999999999 7899999999999999999999999999999999999999999999999998875 25788
Q ss_pred cEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 92 KICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 92 ~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++||+||+++|.+.++|.+|++.+.
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~gr 106 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGR 106 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhh
Confidence 9999999999999999999999875
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=1.9e-30 Score=191.73 Aligned_cols=97 Identities=34% Similarity=0.504 Sum_probs=91.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v 96 (121)
+++++|++++|+++++++++||++++|++++|+||||||||||||+|+|+++|.+|+|.++|+++. +++.+.++||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999985 4688899999
Q ss_pred eeCCCCCCCCCHHHHHhhccc
Q psy16345 97 LQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||.+...+.+||+|.+.+|..
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCC
Confidence 999888788999999999864
No 9
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2e-30 Score=194.20 Aligned_cols=98 Identities=33% Similarity=0.565 Sum_probs=90.8
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE---eCCh--hhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE---RLNK--RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~---~~~~--~~~~~i~ 94 (121)
++|.++++++.|++..+++||+++|+.||.+||+||||||||||||+|+||+.|+.|.|.++|+ +..+ ...++||
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 3588999999999999999999999999999999999999999999999999999999999999 4433 3567899
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||||+..+|++|||.+|++||+.
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~ 103 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLK 103 (345)
T ss_pred EEEechhhcccchHHhhhhhccc
Confidence 99999999999999999999983
No 10
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.5e-29 Score=183.03 Aligned_cols=96 Identities=35% Similarity=0.496 Sum_probs=91.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
++++++++..|+...+|++|||++++||+++|+|+||+|||||||+|+|+.++.+|+|.++|+++.. ..+..++|
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 5899999999999999999999999999999999999999999999999999999999999999962 46778999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|||...+|+.|||+||+.++.
T Consensus 83 VPegR~iF~~LTVeENL~~g~ 103 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGA 103 (237)
T ss_pred CcccccchhhCcHHHHHhhhh
Confidence 999999999999999999875
No 11
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=6.4e-30 Score=180.85 Aligned_cols=97 Identities=30% Similarity=0.468 Sum_probs=90.5
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK 92 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~ 92 (121)
+|++++|++.|++ +++|+||||+|++||++-|+||||||||||||+|++.++|+.|+|+++|.++.+ -+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 4899999999965 569999999999999999999999999999999999999999999999999862 47899
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||+||||..|.++.||+||++|.+.
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh
Confidence 9999999999999999999999874
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=3.5e-29 Score=181.87 Aligned_cols=94 Identities=36% Similarity=0.550 Sum_probs=85.5
Q ss_pred EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh
Q psy16345 22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW 89 (121)
Q Consensus 22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~ 89 (121)
++++++++.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.+.++|.++.. -+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 678999999854 369999999999999999999999999999999999999999999999988751 24
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++.+|||||+.+|.|.+|+.||+.+.
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lp 107 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELP 107 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhH
Confidence 66799999999999999999999964
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=4e-29 Score=188.33 Aligned_cols=96 Identities=39% Similarity=0.578 Sum_probs=90.3
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v 96 (121)
.++++|+++.|+ ++++|++|||+|++|+++||+||||||||||+|+|+|+.+|++|+|.++|.+..+ ..++++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 478899999999 6999999999999999999999999999999999999999999999999988863 567889999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+|++||+.|..
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~ 103 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFA 103 (293)
T ss_pred ccCCCCCccccHHHHHHHHH
Confidence 99999999999999999855
No 14
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=8.1e-29 Score=190.77 Aligned_cols=98 Identities=33% Similarity=0.516 Sum_probs=90.9
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL 97 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~ 97 (121)
.+|+++|++++|+++.+|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++|||
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 36999999999998889999999999999999999999999999999999999999999999998853 3467899999
Q ss_pred eCCCCCCCCCHHHHHhhccc
Q psy16345 98 QQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|++.+||++||+||+.|+..
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~ 102 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLK 102 (353)
T ss_pred CCcccCCCCcHHHHHHHHHH
Confidence 99999999999999998753
No 15
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1e-28 Score=190.03 Aligned_cols=98 Identities=28% Similarity=0.557 Sum_probs=90.9
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL 97 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~ 97 (121)
.+|+++|+++.|+++.+|+++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++|||
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf 84 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF 84 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 36999999999998889999999999999999999999999999999999999999999999998853 3457899999
Q ss_pred eCCCCCCCCCHHHHHhhccc
Q psy16345 98 QQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|++.+||++||+||+.|+..
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~ 104 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLK 104 (351)
T ss_pred CCcccCCCCCHHHHHHHHHh
Confidence 99999999999999998753
No 16
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9e-29 Score=190.71 Aligned_cols=97 Identities=29% Similarity=0.559 Sum_probs=89.9
Q ss_pred EEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEe
Q psy16345 21 ELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVL 97 (121)
Q Consensus 21 ~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~ 97 (121)
+++++|++++| +++.+|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 77889999999999999999999999999999999999999999999999998853 3457899999
Q ss_pred eCCCCCCCCCHHHHHhhccc
Q psy16345 98 QQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|++.+||++||+||+.++..
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred CCccccCCCCHHHHHHhHHh
Confidence 99999999999999998753
No 17
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=1.8e-28 Score=190.09 Aligned_cols=98 Identities=30% Similarity=0.554 Sum_probs=90.8
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEE
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYV 96 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v 96 (121)
..+|+++|+++.|+++.+|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||
T Consensus 12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 346999999999998889999999999999999999999999999999999999999999999998853 345789999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
||++.+||++||+||+.|+.
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l 111 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGL 111 (375)
T ss_pred ecCcccCCCCCHHHHHHHHH
Confidence 99999999999999999875
No 18
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=2e-28 Score=185.36 Aligned_cols=96 Identities=29% Similarity=0.428 Sum_probs=89.3
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV 96 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v 96 (121)
.+++++|++++|+++.+|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.+ ..+++++|+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 36999999999998899999999999999999999999999999999999999999999999998753 456789999
Q ss_pred eeCCCCCCCCCHHHHHhhc
Q psy16345 97 LQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++.+++.+|++||+.+.
T Consensus 86 ~q~~~~~~~~tv~e~l~~~ 104 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVF 104 (306)
T ss_pred eccCcCCCCCcHHHHHHHH
Confidence 9999999999999999863
No 19
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.7e-28 Score=188.50 Aligned_cols=99 Identities=32% Similarity=0.536 Sum_probs=91.3
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEE
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYV 96 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v 96 (121)
..+|+++++++.|++.++|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 346999999999988889999999999999999999999999999999999999999999999998753 356789999
Q ss_pred eeCCCCCCCCCHHHHHhhccc
Q psy16345 97 LQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||++.+|+++||+||+.++..
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~ 117 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLK 117 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHH
Confidence 999999999999999998753
No 20
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.8e-29 Score=186.49 Aligned_cols=97 Identities=24% Similarity=0.373 Sum_probs=89.7
Q ss_pred EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-------hh
Q psy16345 21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------KR 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-------~~ 88 (121)
+|+++++++.|.. ..+++||||+|++|+++||||.||||||||+|||.+|..|++|+|.++|+++. +.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 4899999999975 36999999999999999999999999999999999999999999999998875 25
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
.|++|||+||+++|+...||++|++|.+.
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe 109 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE 109 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHh
Confidence 78899999999999999999999999874
No 21
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=2.7e-28 Score=187.89 Aligned_cols=96 Identities=28% Similarity=0.544 Sum_probs=89.5
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q 98 (121)
+|+++++++.|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 5899999999998889999999999999999999999999999999999999999999999998853 34568999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+|+++|++||+.++.
T Consensus 82 ~~~l~p~~tv~eni~~~~ 99 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGL 99 (353)
T ss_pred CcccCCCCcHHHHHHhhh
Confidence 999999999999999875
No 22
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=4.5e-28 Score=185.82 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=89.7
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEE
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICY 95 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~ 95 (121)
+.+|+++|++++|+++.+|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 346999999999999999999999999999999999999999999999999999999999999998752 45678999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++.+|++||+.+.
T Consensus 119 v~q~~~~~~~~tv~e~l~~~ 138 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVF 138 (340)
T ss_pred EeCCccCCCCCcHHHHHHHH
Confidence 99999999999999999853
No 23
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.9e-28 Score=177.48 Aligned_cols=94 Identities=33% Similarity=0.609 Sum_probs=86.3
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcccEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~i~ 94 (121)
++++|+++.|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+++.++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 468999999988889999999999999999999999999999999999999999999999988642 3467899
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++|++.+++.+|++||+.++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred EEccCcccCCCCcHHHHHHHH
Confidence 999999999989999999875
No 24
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7e-28 Score=176.02 Aligned_cols=96 Identities=32% Similarity=0.484 Sum_probs=87.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q 98 (121)
+++++|+++.|+++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++.++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 5899999999988889999999999999999999999999999999999999999999999998752 23567999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++.+|++||+.++.
T Consensus 82 ~~~~~~~~tv~e~l~~~~ 99 (239)
T cd03296 82 HYALFRHMTVFDNVAFGL 99 (239)
T ss_pred CCcccCCCCHHHHHhhhh
Confidence 999998899999998753
No 25
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-28 Score=176.60 Aligned_cols=97 Identities=26% Similarity=0.494 Sum_probs=89.2
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~------~ 88 (121)
..++++||++.|+++.+|++||++|++++++|||||||||||||||++.++.... +|+|.++|+++.. .
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 4589999999999999999999999999999999999999999999999987654 4999999999852 6
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
+|+++|+|||.|+-|| +|++||++++.+
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 8999999999999998 799999999874
No 26
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.4e-28 Score=173.36 Aligned_cols=94 Identities=24% Similarity=0.457 Sum_probs=86.9
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI 101 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~ 101 (121)
++++|+++.|+++.+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++....++.++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 46899999998888999999999999999999999999999999999999999999999998876555678999999999
Q ss_pred CCCCCCHHHHHhhc
Q psy16345 102 FFPELTLRQTLEVS 115 (121)
Q Consensus 102 l~~~ltv~e~l~~~ 115 (121)
+++.+|++||+.+.
T Consensus 81 ~~~~~tv~e~l~~~ 94 (210)
T cd03269 81 LYPKMKVIDQLVYL 94 (210)
T ss_pred CCcCCcHHHHHHHH
Confidence 99889999999764
No 27
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.3e-28 Score=178.15 Aligned_cols=97 Identities=32% Similarity=0.514 Sum_probs=85.1
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChh-hcccEEEEee
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR-WKRKICYVLQ 98 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~-~~~~i~~v~Q 98 (121)
..|+++|+++.|+++++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.++|++..+. .+.+||||||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 469999999999866899999999999999999999999999999999999999999999999887643 3568999999
Q ss_pred CCCC--CCCCCHHHHHhhcc
Q psy16345 99 QDIF--FPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l--~~~ltv~e~l~~~~ 116 (121)
...+ -..+||+|-+.++.
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~ 102 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGR 102 (254)
T ss_pred ccccCCCCCcCHHHHHHccC
Confidence 6532 23469999999875
No 28
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=185.46 Aligned_cols=96 Identities=27% Similarity=0.537 Sum_probs=89.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q 98 (121)
.|+++|++++|+++.+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||+|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 5899999999998889999999999999999999999999999999999999999999999998752 33567999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+|+++|++||+.++.
T Consensus 83 ~~~l~~~~tv~eni~~~~ 100 (369)
T PRK11000 83 SYALYPHLSVAENMSFGL 100 (369)
T ss_pred CcccCCCCCHHHHHHhHH
Confidence 999999999999999864
No 29
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=6.6e-28 Score=173.56 Aligned_cols=95 Identities=26% Similarity=0.438 Sum_probs=85.9
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcc
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKR 91 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~ 91 (121)
+++++|+++.|++ +++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 3789999999964 469999999999999999999999999999999999999999999999998742 2456
Q ss_pred cEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 92 KICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 92 ~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
.++|++|++.+++.+|++||+.++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~ 104 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFP 104 (216)
T ss_pred hceEEecCccccccccHHHHHHHH
Confidence 899999999999889999999875
No 30
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=1.1e-27 Score=180.76 Aligned_cols=95 Identities=29% Similarity=0.445 Sum_probs=87.9
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV 96 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v 96 (121)
++|+++|++++|+++.+|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. ..++.++|+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 46999999999998889999999999999999999999999999999999999999999999998742 356789999
Q ss_pred eeCCCCCCCCCHHHHHhh
Q psy16345 97 LQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~ 114 (121)
+|++.+++.+|++||+.+
T Consensus 83 ~q~~~~~~~~tv~e~l~~ 100 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLV 100 (303)
T ss_pred eccccCCcCCcHHHHHHH
Confidence 999999989999999975
No 31
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=1.1e-27 Score=185.10 Aligned_cols=96 Identities=34% Similarity=0.589 Sum_probs=89.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc--cEEEECCEeCCh--hhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLNKERLNK--RWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~--G~i~~~g~~~~~--~~~~~i~~v 96 (121)
.+++++++++|+++.+|+++||+|++|++++|+||||||||||||+|+|+++|++ |+|.++|+++.. ..++.++||
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 4889999999998889999999999999999999999999999999999999999 999999998753 345689999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
||++.+|+++||+||+.|+.
T Consensus 85 fQ~~~l~p~~tv~enl~~~l 104 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGL 104 (362)
T ss_pred ECCcccCCCCcHHHHHHHHH
Confidence 99999999999999999875
No 32
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.4e-28 Score=172.99 Aligned_cols=95 Identities=41% Similarity=0.648 Sum_probs=86.4
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
++++|+++.|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 468999999988889999999999999999999999999999999999999999999999998752 345679999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+|++||+.+..
T Consensus 81 ~~~~~~~tv~~~l~~~~ 97 (213)
T cd03259 81 YALFPHLTVAENIAFGL 97 (213)
T ss_pred hhhccCCcHHHHHHhHH
Confidence 99988899999998753
No 33
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=8.5e-28 Score=173.07 Aligned_cols=95 Identities=36% Similarity=0.555 Sum_probs=85.5
Q ss_pred EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh
Q psy16345 22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW 89 (121)
Q Consensus 22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~ 89 (121)
|+++|+++.|++ +++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999976 689999999999999999999999999999999999999999999999988742 13
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++.+|++||+.++.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~ 107 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPL 107 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHH
Confidence 467999999999998899999998753
No 34
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=1.2e-27 Score=172.20 Aligned_cols=94 Identities=31% Similarity=0.476 Sum_probs=86.5
Q ss_pred EEEeeeEEEcCCc----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEE
Q psy16345 22 LVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~~~~----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~ 94 (121)
++++|+++.|+++ ++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. .+++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 7899999999876 79999999999999999999999999999999999999999999999998752 4567899
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++|++.+++.+|++||+.+.
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~ 102 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYF 102 (218)
T ss_pred EecCCcccCcCCCHHHHHHHH
Confidence 999999999989999999764
No 35
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=1.9e-27 Score=179.51 Aligned_cols=95 Identities=23% Similarity=0.447 Sum_probs=88.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEe
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVL 97 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~ 97 (121)
.+++++++++|+++.+|+++||++++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. ..++.++|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 4889999999998999999999999999999999999999999999999999999999999998753 4567899999
Q ss_pred eCCCCCCCCCHHHHHhhc
Q psy16345 98 QQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~ 115 (121)
|++.+++.+|+.||+.+.
T Consensus 82 q~~~l~~~~tv~e~l~~~ 99 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFI 99 (301)
T ss_pred CCCCCCCCCcHHHHHHHH
Confidence 999999999999999763
No 36
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.3e-27 Score=172.56 Aligned_cols=94 Identities=27% Similarity=0.343 Sum_probs=86.2
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEee
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVLQ 98 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~Q 98 (121)
|+++|+++.|+++++|+++||++.+|++++|+|+||||||||+|+|+|+++|++|+|.++|.++. ..+++.++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 46899999998889999999999999999999999999999999999999999999999998764 244567999999
Q ss_pred CCCCCCCCCHHHHHhhc
Q psy16345 99 QDIFFPELTLRQTLEVS 115 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~ 115 (121)
++.+++.+|+++|+.+.
T Consensus 81 ~~~~~~~~tv~~~l~~~ 97 (220)
T cd03265 81 DLSVDDELTGWENLYIH 97 (220)
T ss_pred CccccccCcHHHHHHHH
Confidence 99999989999999874
No 37
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.95 E-value=1.4e-27 Score=172.19 Aligned_cols=95 Identities=35% Similarity=0.502 Sum_probs=86.4
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~v 96 (121)
|+++|++++|+++++++++||++++|+++||+||||||||||+++|+|+++|++|+|.++|.++.. . .++.++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 468999999988889999999999999999999999999999999999999999999999988742 2 35679999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+|++||+.+..
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred ccccccCCCCcHHHHHHHHh
Confidence 99999999999999998754
No 38
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.95 E-value=7.9e-28 Score=192.60 Aligned_cols=98 Identities=33% Similarity=0.503 Sum_probs=90.3
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v 96 (121)
.++++||+|+|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++. +.++++++||
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 5999999999965 56999999999999999999999999999999999999999999999999876 3577899999
Q ss_pred eeCCCCCCCCCHHHHHhhcccCc
Q psy16345 97 LQQDIFFPELTLRQTLEVSIADE 119 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~~~~ 119 (121)
+|++.+|+. |++||+.++.+++
T Consensus 414 ~Q~~~lF~~-TI~eNI~~g~~~~ 435 (529)
T TIGR02868 414 AQDAHLFDT-TVRDNLRLGRPDA 435 (529)
T ss_pred ccCcccccc-cHHHHHhccCCCC
Confidence 999999987 9999999987543
No 39
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.95 E-value=1.6e-27 Score=182.95 Aligned_cols=96 Identities=23% Similarity=0.398 Sum_probs=87.2
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hh
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~ 89 (121)
+|+++|++++|++ .++|+++||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|.++.. .+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3889999999952 479999999999999999999999999999999999999999999999998752 24
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++++|+||++.+++.+|++||+.++.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~ 107 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPL 107 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHH
Confidence 678999999999999999999999864
No 40
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=1.5e-27 Score=171.99 Aligned_cols=94 Identities=33% Similarity=0.513 Sum_probs=86.0
Q ss_pred EEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345 22 LVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v 96 (121)
|+++|+++.|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 468999999976 789999999999999999999999999999999999999999999999998752 456779999
Q ss_pred eeCCCCCCCCCHHHHHhhc
Q psy16345 97 LQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++.+++.+|+++|+.+.
T Consensus 81 ~q~~~~~~~~tv~~~l~~~ 99 (220)
T cd03263 81 PQFDALFDELTVREHLRFY 99 (220)
T ss_pred cCcCCccccCCHHHHHHHH
Confidence 9999999889999999874
No 41
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.95 E-value=1.4e-27 Score=171.45 Aligned_cols=95 Identities=33% Similarity=0.508 Sum_probs=86.4
Q ss_pred EEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345 21 ELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK 92 (121)
Q Consensus 21 ~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~ 92 (121)
+++++|+++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 37899999999 46789999999999999999999999999999999999999999999999998742 24568
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++|++.+++.+|++||+.+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~ 103 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALP 103 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHH
Confidence 99999999999889999999875
No 42
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=1.8e-27 Score=169.88 Aligned_cols=95 Identities=31% Similarity=0.533 Sum_probs=87.5
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEee
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQ 98 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q 98 (121)
++++|++++|+++++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+ ..+++++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 789999999988889999999999999999999999999999999999999999999999987752 45678999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++.+|+++|+.+..
T Consensus 82 ~~~~~~~~tv~~~~~~~~ 99 (200)
T PRK13540 82 RSGINPYLTLRENCLYDI 99 (200)
T ss_pred ccccCcCCCHHHHHHHHH
Confidence 998888899999998753
No 43
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.3e-27 Score=171.27 Aligned_cols=94 Identities=35% Similarity=0.528 Sum_probs=85.7
Q ss_pred EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345 22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL 97 (121)
Q Consensus 22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~ 97 (121)
++++|+++.|++ +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .++.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-PGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-ccCcEEEEe
Confidence 468999999987 789999999999999999999999999999999999999999999999988753 456799999
Q ss_pred eCCCCCCCCCHHHHHhhcc
Q psy16345 98 QQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~ 116 (121)
|++.+++.+|++||+.+..
T Consensus 80 q~~~~~~~~tv~e~l~~~~ 98 (220)
T cd03293 80 QQDALLPWLTVLDNVALGL 98 (220)
T ss_pred cccccccCCCHHHHHHHHH
Confidence 9999988899999998753
No 44
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.95 E-value=3e-27 Score=184.62 Aligned_cols=96 Identities=28% Similarity=0.469 Sum_probs=89.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v 96 (121)
+|+++|++++|+++++|+++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++. +.++++++||
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999875 2457789999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+|++||+.++.
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~ 102 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGR 102 (402)
T ss_pred ccCCCCCCCCCHHHHHHhcc
Confidence 99999988999999998764
No 45
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=1.8e-27 Score=170.38 Aligned_cols=95 Identities=35% Similarity=0.550 Sum_probs=86.5
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
++++|++++|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 468999999988899999999999999999999999999999999999999999999999987642 345679999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+|++||+.+..
T Consensus 81 ~~~~~~~tv~e~l~~~~ 97 (208)
T cd03268 81 PGFYPNLTARENLRLLA 97 (208)
T ss_pred CccCccCcHHHHHHHHH
Confidence 99998899999997753
No 46
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.9e-27 Score=172.90 Aligned_cols=94 Identities=27% Similarity=0.468 Sum_probs=86.2
Q ss_pred EEEeeeEEEcCCc----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhc
Q psy16345 22 LVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWK 90 (121)
Q Consensus 22 i~~~~l~~~~~~~----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~ 90 (121)
|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999876 89999999999999999999999999999999999999999999999998742 235
Q ss_pred ccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 91 RKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 91 ~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+.++|++|++.+++.+|++||+.+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHH
Confidence 6799999999999889999999875
No 47
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=2.3e-27 Score=170.27 Aligned_cols=94 Identities=27% Similarity=0.488 Sum_probs=85.8
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
|+++|+++.|+++++++++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ..++.++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 468999999988899999999999999999999999999999999999999999999999998752 234579999999
Q ss_pred CCCCCCCCHHHHHhhc
Q psy16345 100 DIFFPELTLRQTLEVS 115 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~ 115 (121)
+.+++.+|++||+.++
T Consensus 81 ~~~~~~~tv~~~l~~~ 96 (213)
T cd03301 81 YALYPHMTVYDNIAFG 96 (213)
T ss_pred hhhccCCCHHHHHHHH
Confidence 9988889999999875
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.8e-27 Score=181.50 Aligned_cols=96 Identities=23% Similarity=0.399 Sum_probs=87.1
Q ss_pred EEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hh
Q psy16345 21 ELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~ 89 (121)
+|+++|++++|+ ++++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. .+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999997 3679999999999999999999999999999999999999999999999998752 23
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++.+|++||+.++.
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 678999999999999899999998753
No 49
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=3e-27 Score=172.65 Aligned_cols=95 Identities=26% Similarity=0.489 Sum_probs=87.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------hhcccEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------~~~~~i~ 94 (121)
+++++|+++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 3789999999988889999999999999999999999999999999999999999999999998742 3466799
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++|++.+++.+|+++|+.++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~ 101 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFG 101 (240)
T ss_pred EEecccccCCCCcHHHHHHhH
Confidence 999999999889999999875
No 50
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=3e-28 Score=177.46 Aligned_cols=97 Identities=32% Similarity=0.470 Sum_probs=90.4
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~ 94 (121)
..+++++++++||+-.+++||||++++||++|||||||||||||+++|+|+++|++|+|.++|+++.. ..+..++
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 35889999999999999999999999999999999999999999999999999999999999999862 3467799
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
--||.+.+|++|||.||++.+.
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~ 104 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGA 104 (250)
T ss_pred eecccccccCCCcHHHHHHHHh
Confidence 9999999999999999999874
No 51
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=2.1e-27 Score=172.80 Aligned_cols=95 Identities=34% Similarity=0.516 Sum_probs=86.1
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~v 96 (121)
++++|+++.|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. . .+..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 468999999988889999999999999999999999999999999999999999999999998752 2 24579999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+|++||+.+..
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~ 100 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAA 100 (236)
T ss_pred ecccccccCCCHHHHHHHHH
Confidence 99999999999999998754
No 52
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=4.3e-27 Score=174.88 Aligned_cols=96 Identities=28% Similarity=0.498 Sum_probs=87.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK 92 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~ 92 (121)
.+|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 35999999999988899999999999999999999999999999999999999999999999988742 23567
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++|++.+++.+|++||+.+.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~ 108 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYP 108 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHH
Confidence 99999999999989999999864
No 53
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=1.7e-27 Score=173.98 Aligned_cols=95 Identities=32% Similarity=0.527 Sum_probs=86.5
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhccc
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRK 92 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~ 92 (121)
+++++|+++.|+ ++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 378999999998 7789999999999999999999999999999999999999999999999988642 24667
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++|++.+++.+|++||+.++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhc
Confidence 99999999999889999999764
No 54
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.95 E-value=2.4e-27 Score=170.02 Aligned_cols=94 Identities=32% Similarity=0.552 Sum_probs=86.1
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKICY 95 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~~ 95 (121)
++++|+++.|+++++++++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+++.++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 46899999998888999999999999999999999999999999999999999999999998873 134678999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++.+|++||+.+.
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~ 100 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLA 100 (213)
T ss_pred EecccccCCCCcHHHHHHhH
Confidence 99999999889999999764
No 55
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.1e-27 Score=173.98 Aligned_cols=94 Identities=34% Similarity=0.522 Sum_probs=86.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
+++++|+++.|+++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++|++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG-PGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC-CCCcEEEEeCCC
Confidence 3789999999988889999999999999999999999999999999999999999999999998753 234689999999
Q ss_pred CCCCCCCHHHHHhhc
Q psy16345 101 IFFPELTLRQTLEVS 115 (121)
Q Consensus 101 ~l~~~ltv~e~l~~~ 115 (121)
.+++.+|++||+.+.
T Consensus 80 ~~~~~~tv~e~l~~~ 94 (255)
T PRK11248 80 GLLPWRNVQDNVAFG 94 (255)
T ss_pred ccCCCCcHHHHHHhH
Confidence 999889999999875
No 56
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.4e-27 Score=170.37 Aligned_cols=95 Identities=27% Similarity=0.457 Sum_probs=85.6
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h---h
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R---W 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~---~ 89 (121)
+++++|+++.|++ +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. . +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 5899999999964 479999999999999999999999999999999999999999999999998742 1 2
Q ss_pred -cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 90 -KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 90 -~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++.++|++|++.+++.+|++||+.+.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~ 111 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMP 111 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHH
Confidence 25799999999999989999999874
No 57
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=3.5e-27 Score=170.51 Aligned_cols=94 Identities=24% Similarity=0.433 Sum_probs=85.9
Q ss_pred EEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcccE
Q psy16345 22 LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRKI 93 (121)
Q Consensus 22 i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~i 93 (121)
++++|+++.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 7899999999 66789999999999999999999999999999999999999999999999988742 246789
Q ss_pred EEEeeCCCCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++|++.+++.+|++||+.+.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~ 103 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIP 103 (222)
T ss_pred EEEecCccccccccHHHHHHhH
Confidence 9999999888889999999875
No 58
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=3e-27 Score=171.61 Aligned_cols=95 Identities=35% Similarity=0.524 Sum_probs=86.0
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~v 96 (121)
++++|+++.|+++.+|+++||++.+|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.. . .++.++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 468999999988889999999999999999999999999999999999999999999999988642 2 34579999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+|++||+.+..
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~ 100 (232)
T cd03218 81 PQEASIFRKLTVEENILAVL 100 (232)
T ss_pred cCCccccccCcHHHHHHHHH
Confidence 99999999899999998753
No 59
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=5.8e-27 Score=173.60 Aligned_cols=95 Identities=24% Similarity=0.424 Sum_probs=87.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
.|+++|+++.|+++++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.++|++|++
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-~~~~~i~~v~q~~ 90 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-EAREDTRLMFQDA 90 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-HhhCceEEEecCc
Confidence 489999999998889999999999999999999999999999999999999999999999988763 3466799999999
Q ss_pred CCCCCCCHHHHHhhcc
Q psy16345 101 IFFPELTLRQTLEVSI 116 (121)
Q Consensus 101 ~l~~~ltv~e~l~~~~ 116 (121)
.+++.+|++||+.++.
T Consensus 91 ~l~~~~tv~enl~~~~ 106 (257)
T PRK11247 91 RLLPWKKVIDNVGLGL 106 (257)
T ss_pred cCCCCCcHHHHHHhcc
Confidence 9998889999998753
No 60
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.95 E-value=2.1e-27 Score=172.06 Aligned_cols=94 Identities=29% Similarity=0.472 Sum_probs=85.0
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC-----CCCccEEEECCEeCCh------hhc
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV-----KLDSGVIRLNKERLNK------RWK 90 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~-----~~~~G~i~~~g~~~~~------~~~ 90 (121)
|+++|+++.|+++++|+++||+|.+|++++|+|+||||||||+|+|+|++ +|++|+|.++|+++.. .++
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 46899999998889999999999999999999999999999999999999 9999999999998642 346
Q ss_pred ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 91 RKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+.++|++|++.++ .+|++||+.++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~ 105 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGL 105 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHH
Confidence 6899999999888 789999998753
No 61
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=3.7e-27 Score=171.10 Aligned_cols=95 Identities=41% Similarity=0.582 Sum_probs=86.5
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~v 96 (121)
|+++|+++.|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 468999999988899999999999999999999999999999999999999999999999988742 235679999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+|+.+|+.++.
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~ 100 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGL 100 (230)
T ss_pred ccCCcccCCCcHHHHHHHHH
Confidence 99999999899999998754
No 62
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=4.4e-27 Score=172.56 Aligned_cols=95 Identities=28% Similarity=0.537 Sum_probs=86.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------------h
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------------R 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------------~ 88 (121)
+++++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5899999999988889999999999999999999999999999999999999999999999987641 2
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++.+|++||+.++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 456799999999999889999999764
No 63
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-27 Score=172.36 Aligned_cols=94 Identities=36% Similarity=0.593 Sum_probs=85.5
Q ss_pred EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcccE
Q psy16345 22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRKI 93 (121)
Q Consensus 22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~i 93 (121)
++++|+++.|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999987 789999999999999999999999999999999999999999999999988742 245679
Q ss_pred EEEeeCCCCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++|++.+++.+|++||+.+.
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EEEcccCcccccCcHHHHHHhh
Confidence 9999999999889999999864
No 64
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=186.77 Aligned_cols=98 Identities=30% Similarity=0.427 Sum_probs=92.2
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~ 94 (121)
..++++++++.|++-.+.++|||++++||+.||+|+||||||||+++|.|+++|++|+|+++|+++. +..+..||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 3589999999999999999999999999999999999999999999999999999999999999985 35677899
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
+|+|++.|++.+||.||+.++..
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e 105 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLE 105 (501)
T ss_pred EEeeccccccccchhhhhhhcCc
Confidence 99999999999999999999875
No 65
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.5e-27 Score=171.04 Aligned_cols=94 Identities=28% Similarity=0.458 Sum_probs=86.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----------hhhc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----------KRWK 90 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----------~~~~ 90 (121)
+++++|+++.|+++.+|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++. ..++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 589999999998889999999999999999999999999999999999999999999999998762 1345
Q ss_pred ccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 91 RKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 91 ~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
++++|++|++.+++.+|++||+.+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~ 105 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIE 105 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHH
Confidence 689999999999998999999964
No 66
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=5.7e-27 Score=167.75 Aligned_cols=96 Identities=29% Similarity=0.429 Sum_probs=87.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEe
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVL 97 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~ 97 (121)
+++++++++.|+++++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. ...+++++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 378999999998888999999999999999999999999999999999999999999999998874 23567899999
Q ss_pred eCCCCCCCCCHHHHHhhcc
Q psy16345 98 QQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~ 116 (121)
|++.+++.+|++||+.+..
T Consensus 81 ~~~~~~~~~tv~e~l~~~~ 99 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQ 99 (204)
T ss_pred CccccCcCCcHHHHHHHHH
Confidence 9999999899999998754
No 67
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5e-27 Score=171.79 Aligned_cols=94 Identities=28% Similarity=0.524 Sum_probs=85.9
Q ss_pred EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345 22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v 96 (121)
+++++++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999987 789999999999999999999999999999999999999999999999988742 346689999
Q ss_pred eeCCCCCCCCCHHHHHhhc
Q psy16345 97 LQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++.+++.+|++||+.+.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~ 99 (242)
T cd03295 81 IQQIGLFPHMTVEENIALV 99 (242)
T ss_pred ccCccccCCCcHHHHHHHH
Confidence 9999999889999999865
No 68
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=5.4e-27 Score=168.31 Aligned_cols=95 Identities=26% Similarity=0.451 Sum_probs=85.6
Q ss_pred EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcccE
Q psy16345 22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKRKI 93 (121)
Q Consensus 22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~~i 93 (121)
++++|+++.|++ +++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964 689999999999999999999999999999999999999999999999988742 245679
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++|++.+++.+|++||+.+..
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHH
Confidence 99999999999899999998753
No 69
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.5e-27 Score=170.98 Aligned_cols=95 Identities=32% Similarity=0.508 Sum_probs=87.5
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
++++++++++|+++++|+++||++++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 5899999999988899999999999999999999999999999999999999999999999998742 23567999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++.+|++||+.+.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~ 102 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAV 102 (241)
T ss_pred eccCCcccccCcHHHHHhhh
Confidence 99999999889999999875
No 70
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8e-27 Score=170.11 Aligned_cols=96 Identities=27% Similarity=0.439 Sum_probs=88.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
+++++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 6999999999988889999999999999999999999999999999999999999999999998742 24567999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++.+|+.+|+.++.
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred eccCcccCCCCcHHHHHHHhh
Confidence 999999998899999998753
No 71
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.95 E-value=5.5e-27 Score=169.56 Aligned_cols=94 Identities=33% Similarity=0.462 Sum_probs=84.3
Q ss_pred EEEeeeEEEcCCc----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhc
Q psy16345 22 LVFSGLSVTLDKR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWK 90 (121)
Q Consensus 22 i~~~~l~~~~~~~----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~ 90 (121)
++++|++++|+++ ++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999765 79999999999999999999999999999999999999999999999998742 345
Q ss_pred ccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345 91 RKICYVLQQD--IFFPELTLRQTLEVS 115 (121)
Q Consensus 91 ~~i~~v~Q~~--~l~~~ltv~e~l~~~ 115 (121)
+.++|++|++ .+++.+|+++|+.+.
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~ 108 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEP 108 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHH
Confidence 6899999998 466778999999764
No 72
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=8.1e-27 Score=170.44 Aligned_cols=96 Identities=33% Similarity=0.551 Sum_probs=87.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 4889999999988889999999999999999999999999999999999999999999999988742 23457999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++.+|++||+.+..
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~ 102 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELAL 102 (242)
T ss_pred eccccccCCCCCHHHHHHHhh
Confidence 999999999999999998753
No 73
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=7.4e-27 Score=170.32 Aligned_cols=95 Identities=34% Similarity=0.497 Sum_probs=86.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEe
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVL 97 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~ 97 (121)
+++++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 3789999999988899999999999999999999999999999999999999999999999988742 2345799999
Q ss_pred eCCCCCCCCCHHHHHhhc
Q psy16345 98 QQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~ 115 (121)
|++.+++.+|+++|+.+.
T Consensus 81 q~~~~~~~~t~~~~l~~~ 98 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYH 98 (236)
T ss_pred CCCCCcccCcHHHHHHHH
Confidence 999888889999999764
No 74
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=1.2e-26 Score=168.28 Aligned_cols=96 Identities=31% Similarity=0.440 Sum_probs=85.5
Q ss_pred cEEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h---
Q psy16345 20 LELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R--- 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~--- 88 (121)
.+++++|+++.|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 35899999999975 359999999999999999999999999999999999999999999999988742 1
Q ss_pred h-cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 W-KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~-~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
. ++.++|++|++.+++.+|++||+.+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~ 112 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELP 112 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHH
Confidence 1 35799999999999889999999764
No 75
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.5e-27 Score=172.10 Aligned_cols=95 Identities=28% Similarity=0.521 Sum_probs=87.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v 96 (121)
+++++|++++|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 5899999999998899999999999999999999999999999999999999999999999988642 345679999
Q ss_pred eeCCCCCCCCCHHHHHhhc
Q psy16345 97 LQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++.+++.+|++||+.++
T Consensus 82 ~q~~~~~~~~tv~~~i~~~ 100 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYG 100 (255)
T ss_pred cccCCCCCCccHHHHHHhc
Confidence 9999888888999999875
No 76
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=162.59 Aligned_cols=92 Identities=35% Similarity=0.600 Sum_probs=84.3
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEee
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQ 98 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q 98 (121)
+++++++++|+++++|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. .+++.++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 468999999988789999999999999999999999999999999999999999999999988752 45678999999
Q ss_pred CCCCCCCCCHHHHHh
Q psy16345 99 QDIFFPELTLRQTLE 113 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~ 113 (121)
++.+++.+|+.||+.
T Consensus 81 ~~~~~~~~tv~~~~~ 95 (173)
T cd03230 81 EPSLYENLTVRENLK 95 (173)
T ss_pred CCccccCCcHHHHhh
Confidence 999998889999975
No 77
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.9e-27 Score=171.07 Aligned_cols=96 Identities=28% Similarity=0.466 Sum_probs=87.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------hhh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------KRW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------~~~ 89 (121)
+|+++|+++.|+++++|+++||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 58999999999888899999999999999999999999999999999999987 4999999999874 134
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++++|++|++.+++.+|+.||+.++.
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGV 110 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHH
Confidence 668999999999998899999998753
No 78
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.7e-27 Score=164.04 Aligned_cols=93 Identities=38% Similarity=0.655 Sum_probs=84.7
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------hhcccEEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------RWKRKICY 95 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------~~~~~i~~ 95 (121)
++++|+++.|+++++++++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 468999999988889999999999999999999999999999999999999999999999987642 34678999
Q ss_pred EeeCCCCCCCCCHHHHHhh
Q psy16345 96 VLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~ 114 (121)
++|++.+++.+|++||+.+
T Consensus 81 ~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 81 VFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EecCCccCCCCCHHHheee
Confidence 9999998888899999864
No 79
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.94 E-value=3.9e-27 Score=194.07 Aligned_cols=99 Identities=34% Similarity=0.587 Sum_probs=92.4
Q ss_pred EEEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++|++|+|+.. .+|+|+||+|++||++||+|+||||||||+|+|.|++.|++|+|.+||.++. ..+|++++
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 59999999999764 6999999999999999999999999999999999999999999999999986 36899999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIADED 120 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~~~ 120 (121)
||+|++.+|.. |++||+.++.++.+
T Consensus 551 ~V~Q~~~Lf~g-SI~eNi~l~~p~~~ 575 (709)
T COG2274 551 YVLQDPFLFSG-SIRENIALGNPEAT 575 (709)
T ss_pred EEcccchhhcC-cHHHHHhcCCCCCC
Confidence 99999999876 99999999988755
No 80
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.2e-26 Score=170.72 Aligned_cols=95 Identities=29% Similarity=0.473 Sum_probs=87.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~ 95 (121)
+++++|+++.|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. . .+..++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5999999999988899999999999999999999999999999999999999999999999998742 2 2446899
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++.+|++||+.++
T Consensus 85 ~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred eccCcccCCCCcHHHHHHHh
Confidence 99999999999999999875
No 81
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.5e-26 Score=166.81 Aligned_cols=96 Identities=27% Similarity=0.399 Sum_probs=87.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEee
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQ 98 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q 98 (121)
.+++++|++++|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..++.++|++|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 46999999999988889999999999999999999999999999999999999999999999988753 33456999999
Q ss_pred CCCCCCCCCHHHHHhhc
Q psy16345 99 QDIFFPELTLRQTLEVS 115 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~ 115 (121)
++.+++.+|++||+.+.
T Consensus 90 ~~~~~~~~t~~e~l~~~ 106 (214)
T PRK13543 90 LPGLKADLSTLENLHFL 106 (214)
T ss_pred CcccccCCcHHHHHHHH
Confidence 99898888999998764
No 82
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=1e-26 Score=168.68 Aligned_cols=95 Identities=26% Similarity=0.479 Sum_probs=86.3
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.+|+++|+++.|+++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 36999999999988899999999999999999999999999999999999999999999999988642 34668999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++. |++||+.+.
T Consensus 86 ~~q~~~l~~~-tv~enl~~~ 104 (225)
T PRK10247 86 CAQTPTLFGD-TVYDNLIFP 104 (225)
T ss_pred Eecccccccc-cHHHHHHhH
Confidence 9999988875 999999764
No 83
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=170.56 Aligned_cols=96 Identities=26% Similarity=0.454 Sum_probs=86.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh----hhcc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK----RWKR 91 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~----~~~~ 91 (121)
+++++|++++|+++.+++++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58999999999888899999999999999999999999999999999999874 69999999998742 4567
Q ss_pred cEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 92 KICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 92 ~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.++|++|++.+++.+|++||+.++.
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~ 107 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGL 107 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHH
Confidence 8999999998888899999998753
No 84
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=1.2e-26 Score=171.58 Aligned_cols=96 Identities=35% Similarity=0.554 Sum_probs=87.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v 96 (121)
+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4889999999988889999999999999999999999999999999999999999999999988642 345679999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+|++||+.+..
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~ 101 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGR 101 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhh
Confidence 99998878889999998753
No 85
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=172.22 Aligned_cols=96 Identities=26% Similarity=0.414 Sum_probs=87.9
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY 95 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~ 95 (121)
.+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++. ..+++.++|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 4699999999998889999999999999999999999999999999999999999999999998864 244667999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++.+|+.||+.++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred eccCCCCCCCccHHHHHHhC
Confidence 99998888889999999875
No 86
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=9.7e-27 Score=171.15 Aligned_cols=94 Identities=30% Similarity=0.462 Sum_probs=85.9
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------------
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------------- 87 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------------- 87 (121)
|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 468999999988889999999999999999999999999999999999999999999999987631
Q ss_pred ---hhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 88 ---RWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 88 ---~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
.+++.++|++|++.+++.+|++||+.++
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~ 111 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA 111 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHH
Confidence 3467899999999999889999999874
No 87
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=6.2e-27 Score=167.14 Aligned_cols=93 Identities=28% Similarity=0.476 Sum_probs=84.1
Q ss_pred EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---h-----hhcccEEE
Q psy16345 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---K-----RWKRKICY 95 (121)
Q Consensus 24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~-----~~~~~i~~ 95 (121)
++|+++.|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++. . ..++.++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 478999998889999999999999999999999999999999999999999999999999853 1 24568999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++.+|++||+.+..
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~ 101 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGL 101 (206)
T ss_pred EecchhhccCCcHHHHHHHHH
Confidence 999999998899999998753
No 88
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.94 E-value=9.9e-27 Score=170.66 Aligned_cols=94 Identities=23% Similarity=0.472 Sum_probs=85.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCCh------hh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLNK------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~------~~ 89 (121)
+++++|++++|+++.+++++||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 378999999998888999999999999999999999999999999999999988 9999999998742 34
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++.++|++|++.+++ +|++||+.+.
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~ 105 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYG 105 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhH
Confidence 668999999998888 8999999875
No 89
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=1.1e-26 Score=191.12 Aligned_cols=96 Identities=28% Similarity=0.448 Sum_probs=89.2
Q ss_pred EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.++++||+|+|+ ++++|+|+||+|++|+.+||+|+||||||||+|+|+|+++|++|+|.++|.++. ..+|++++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 599999999995 367999999999999999999999999999999999999999999999999986 36788999
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||+|++.+|+. |++||+.++.+
T Consensus 531 ~v~Q~~~lf~g-TI~eNi~~~~~ 552 (686)
T TIGR03797 531 VVLQNGRLMSG-SIFENIAGGAP 552 (686)
T ss_pred EEccCCccCcc-cHHHHHhcCCC
Confidence 99999999977 99999999864
No 90
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.7e-27 Score=167.79 Aligned_cols=93 Identities=33% Similarity=0.556 Sum_probs=85.1
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEee
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQ 98 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q 98 (121)
|+++++++.|+++++++++||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 46899999998888999999999999 999999999999999999999999999999999987642 45678999999
Q ss_pred CCCCCCCCCHHHHHhhc
Q psy16345 99 QDIFFPELTLRQTLEVS 115 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~ 115 (121)
++.+++.+|++||+.+.
T Consensus 80 ~~~~~~~~tv~~~l~~~ 96 (211)
T cd03264 80 EFGVYPNFTVREFLDYI 96 (211)
T ss_pred CCcccccCCHHHHHHHH
Confidence 99999889999999864
No 91
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.94 E-value=1e-26 Score=166.15 Aligned_cols=95 Identities=31% Similarity=0.369 Sum_probs=86.8
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEee
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVLQ 98 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~Q 98 (121)
++++|+++.|+++.+++++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++. ..++++++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 46899999998889999999999999999999999999999999999999999999999998864 245678999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++.+|++||+.+..
T Consensus 81 ~~~~~~~~tv~e~l~~~~ 98 (201)
T cd03231 81 APGIKTTLSVLENLRFWH 98 (201)
T ss_pred ccccCCCcCHHHHHHhhc
Confidence 998888899999998754
No 92
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.94 E-value=1.3e-26 Score=165.06 Aligned_cols=95 Identities=35% Similarity=0.464 Sum_probs=86.2
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEee
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVLQ 98 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~Q 98 (121)
++++++++.|+++++|+++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++. ..+++.++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 46899999999889999999999999999999999999999999999999999999999998864 234568999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++.+|+.+|+.+..
T Consensus 81 ~~~~~~~~tv~~~l~~~~ 98 (198)
T TIGR01189 81 LPGLKPELSALENLHFWA 98 (198)
T ss_pred CcccccCCcHHHHHHHHH
Confidence 988888899999997653
No 93
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.94 E-value=1.5e-26 Score=170.71 Aligned_cols=95 Identities=24% Similarity=0.425 Sum_probs=87.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------------
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------------- 86 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-------------- 86 (121)
+++++|+++.|+++++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence 489999999998889999999999999999999999999999999999999999999999998763
Q ss_pred ---hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 87 ---KRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 87 ---~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
..+++.++|++|++.+++.+|++||+.++
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~ 116 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 116 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHH
Confidence 13456899999999999889999999764
No 94
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.2e-27 Score=184.78 Aligned_cols=98 Identities=29% Similarity=0.415 Sum_probs=91.5
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~ 94 (121)
..+++++++|+|+.-++|++|||++.+||++||+|+||||||||+|+|+|.++|++|+|.++|++.. ......|+
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 3589999999999999999999999999999999999999999999999999999999999999985 24566899
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
.|+|+.+++|+|||.||+.++..
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred EEeechhccCCccHHHHhhcccc
Confidence 99999999999999999998764
No 95
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=1.6e-26 Score=166.74 Aligned_cols=94 Identities=30% Similarity=0.499 Sum_probs=84.3
Q ss_pred EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h---hc
Q psy16345 22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R---WK 90 (121)
Q Consensus 22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~---~~ 90 (121)
++++|+++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. . ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 688999999964 479999999999999999999999999999999999999999999999998742 1 22
Q ss_pred -ccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 91 -RKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 91 -~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+.++|++|++.+++.+|++||+.+.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~ 107 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMP 107 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHH
Confidence 5799999999999889999999874
No 96
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=169.54 Aligned_cols=95 Identities=29% Similarity=0.463 Sum_probs=86.3
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
++++++|++++|+++.+|+++||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 35899999999988889999999999999999999999999999999999999999999999988742 44668999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++ .|++||+.+.
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~ 100 (241)
T PRK14250 82 VFQQPHLFE-GTVKDNIEYG 100 (241)
T ss_pred EecCchhch-hhHHHHHhcc
Confidence 999998886 5999999864
No 97
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.6e-27 Score=174.33 Aligned_cols=96 Identities=26% Similarity=0.513 Sum_probs=92.5
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
++++++|+++|+++.+++|+||++++|++.|++|+|||||||++|+|+|++.|++|+|.++|.+++...+.+|||+|.+.
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 58899999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCCCCCCHHHHHhhcc
Q psy16345 101 IFFPELTLRQTLEVSI 116 (121)
Q Consensus 101 ~l~~~ltv~e~l~~~~ 116 (121)
.|++.+||.|.+.|.+
T Consensus 82 GLy~k~tv~dql~yla 97 (300)
T COG4152 82 GLYPKMTVEDQLKYLA 97 (300)
T ss_pred ccCccCcHHHHHHHHH
Confidence 9999999999998765
No 98
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=169.31 Aligned_cols=97 Identities=29% Similarity=0.498 Sum_probs=85.7
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------ 87 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------ 87 (121)
+..|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 345999999999988889999999999999999999999999999999999864 589999999988741
Q ss_pred hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.+++.++|++|++.+++. |++||+.++.
T Consensus 84 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~ 111 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPK-SIFENVAYGL 111 (253)
T ss_pred HHhhcEEEEecCCCCCcC-cHHHHHHHHH
Confidence 346689999999988874 9999998753
No 99
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=9.5e-27 Score=166.49 Aligned_cols=94 Identities=33% Similarity=0.458 Sum_probs=82.7
Q ss_pred EEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEeeCC
Q psy16345 23 VFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQQD 100 (121)
Q Consensus 23 ~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~~ 100 (121)
+++|+++.|++ +++|+++||++++|++++|+|||||||||||++|+|+++|++|+|.++|.++.. .+++.++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 789999999999999999999999999999999999999999999999998753 4556799999997
Q ss_pred C-CCCCCCHHHHHhhcc
Q psy16345 101 I-FFPELTLRQTLEVSI 116 (121)
Q Consensus 101 ~-l~~~ltv~e~l~~~~ 116 (121)
. .++.+|++||+.+..
T Consensus 81 ~~~~~~~tv~e~l~~~~ 97 (205)
T cd03226 81 DYQLFTDSVREELLLGL 97 (205)
T ss_pred hhhhhhccHHHHHhhhh
Confidence 4 234569999998754
No 100
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=171.20 Aligned_cols=96 Identities=23% Similarity=0.394 Sum_probs=88.1
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.+|+++|++++|+++.+|+++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .+++.++|
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 46999999999998889999999999999999999999999999999999999999999999998742 34567999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++.+|++||+.++
T Consensus 86 v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 86 LAQNATTPGDITVQELVARG 105 (265)
T ss_pred eeccCcCCCCCcHHHHHHhC
Confidence 99999988889999999875
No 101
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=2.3e-26 Score=165.07 Aligned_cols=95 Identities=28% Similarity=0.419 Sum_probs=86.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEeeC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQQ 99 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~ 99 (121)
+++++|+++.|+++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++++|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 5899999999988889999999999999999999999999999999999999999999999987642 256679999998
Q ss_pred CCCCCCCCHHHHHhhc
Q psy16345 100 DIFFPELTLRQTLEVS 115 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~ 115 (121)
+.+++.+|++||+.+.
T Consensus 82 ~~~~~~~tv~~~l~~~ 97 (207)
T PRK13539 82 NAMKPALTVAENLEFW 97 (207)
T ss_pred CcCCCCCcHHHHHHHH
Confidence 8888889999998764
No 102
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.9e-28 Score=174.74 Aligned_cols=97 Identities=35% Similarity=0.551 Sum_probs=90.7
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~ 94 (121)
..+.++|+.++|+.+.++++|||++++||++||+|||||||||.+.++.|+.+|++|+|.+++.+++. +.|..+|
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 35889999999999999999999999999999999999999999999999999999999999999863 4567899
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|+||++.+|..+||+||+...+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vl 104 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVL 104 (243)
T ss_pred cccccchHhhcCcHHHHHHHHH
Confidence 9999999999999999998765
No 103
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=6.3e-27 Score=168.14 Aligned_cols=93 Identities=37% Similarity=0.594 Sum_probs=82.5
Q ss_pred EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCC
Q psy16345 23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIF 102 (121)
Q Consensus 23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l 102 (121)
+++|++++|+++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++|++|++.+
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-KERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-HHHhheEEecccccc
Confidence 3689999998888999999999999999999999999999999999999999999999998764 346689999999876
Q ss_pred C--CCCCHHHHHhhcc
Q psy16345 103 F--PELTLRQTLEVSI 116 (121)
Q Consensus 103 ~--~~ltv~e~l~~~~ 116 (121)
+ +.+|++||+.+..
T Consensus 80 ~~~~~~tv~e~l~~~~ 95 (213)
T cd03235 80 DRDFPISVRDVVLMGL 95 (213)
T ss_pred ccCCCCcHHHHHHhcc
Confidence 3 3379999998754
No 104
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3e-26 Score=164.10 Aligned_cols=96 Identities=43% Similarity=0.704 Sum_probs=86.6
Q ss_pred EEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEEEECCEeCCh---hhc
Q psy16345 21 ELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVIRLNKERLNK---RWK 90 (121)
Q Consensus 21 ~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~---~~~ 90 (121)
.+.++|++|.|+ ++.+|+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 378999999995 4679999999999999999999999999999999999998 899999999998752 456
Q ss_pred ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 91 RKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+.++|++|++.+++.+|++||+.+..
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~ 108 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFAL 108 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhh
Confidence 68999999998998899999998754
No 105
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=170.95 Aligned_cols=97 Identities=24% Similarity=0.413 Sum_probs=86.7
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------h
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------K 87 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~ 87 (121)
..+|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++. .
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 346999999999988889999999999999999999999999999999999987 58999999998863 2
Q ss_pred hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.+++.++|++|++.+++. |++||+.+..
T Consensus 91 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~ 118 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPK-SIYENIAFGA 118 (269)
T ss_pred HHhhceEEEccCCccchh-hHHHHHhhhh
Confidence 356679999999988875 9999998754
No 106
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.5e-26 Score=169.84 Aligned_cols=96 Identities=26% Similarity=0.443 Sum_probs=86.1
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~ 88 (121)
..|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. .
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 469999999999888899999999999999999999999999999999999874 89999999988741 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++.++|++|++.+++. |+.||+.++.
T Consensus 98 ~~~~i~~v~q~~~~~~~-tv~enl~~~~ 124 (267)
T PRK14235 98 LRARVGMVFQKPNPFPK-SIYENVAYGP 124 (267)
T ss_pred HhhceEEEecCCCCCCC-cHHHHHHHHH
Confidence 46679999999988875 9999998753
No 107
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=2.8e-26 Score=165.94 Aligned_cols=94 Identities=27% Similarity=0.441 Sum_probs=85.4
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI 101 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~ 101 (121)
+++++++++|+++.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.....+.++|++|++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 46899999998888999999999999999999999999999999999999999999999998875332357999999999
Q ss_pred CCCCCCHHHHHhhc
Q psy16345 102 FFPELTLRQTLEVS 115 (121)
Q Consensus 102 l~~~ltv~e~l~~~ 115 (121)
+++.+|++||+.+.
T Consensus 81 ~~~~~t~~~~~~~~ 94 (223)
T TIGR03740 81 LYENLTARENLKVH 94 (223)
T ss_pred ccccCCHHHHHHHH
Confidence 88889999999764
No 108
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.9e-26 Score=169.23 Aligned_cols=96 Identities=27% Similarity=0.457 Sum_probs=86.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------hhh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------KRW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------~~~ 89 (121)
+++++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999888899999999999999999999999999999999999874 6999999998863 135
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++.+|++||+.++.
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~ 110 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGL 110 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHH
Confidence 678999999999998899999998653
No 109
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=2.9e-26 Score=169.04 Aligned_cols=94 Identities=32% Similarity=0.476 Sum_probs=85.9
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEe
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVL 97 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~ 97 (121)
++++|+++.|+++.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 678999999998899999999999999999999999999999999999999999999999988742 3456799999
Q ss_pred eCCCCCCCCCHHHHHhhc
Q psy16345 98 QQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~ 115 (121)
|++.+++.+|++||+.++
T Consensus 82 q~~~~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALG 99 (256)
T ss_pred ccCccCCCCCHHHHHHhc
Confidence 998877788999999875
No 110
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.3e-26 Score=162.62 Aligned_cols=95 Identities=46% Similarity=0.707 Sum_probs=86.0
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCChhhcccEE
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLNKRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~~~~~~i~ 94 (121)
.++++++++.|++ +++++++||++++|++++|+|+||||||||+++|+|+. +|++|+|.++|+++...+++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 4889999999964 67999999999999999999999999999999999986 48999999999987655567899
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++|++.+++.+|++||+.++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~ 103 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFS 103 (192)
T ss_pred EecccCccccCCcHHHHHHHH
Confidence 999999999889999999874
No 111
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=1.6e-26 Score=165.68 Aligned_cols=93 Identities=32% Similarity=0.513 Sum_probs=82.5
Q ss_pred EEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345 23 VFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV 96 (121)
Q Consensus 23 ~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v 96 (121)
+++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++. ..+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 78999999999999999999999999999999999999999999999998874 2356789999
Q ss_pred eeCCC-CCCCCCHHHHHhhc
Q psy16345 97 LQQDI-FFPELTLRQTLEVS 115 (121)
Q Consensus 97 ~Q~~~-l~~~ltv~e~l~~~ 115 (121)
+|++. .++.+|++||+.+.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~ 100 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFG 100 (211)
T ss_pred ecChhhhcCCCcHHHHHHHH
Confidence 99975 35678999999874
No 112
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.7e-26 Score=168.19 Aligned_cols=95 Identities=22% Similarity=0.333 Sum_probs=85.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------hhh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------KRW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------~~~ 89 (121)
+++++++++.|+++++|+++||+|++|++++|+|+||||||||+|+|+|+++| ++|+|.++|.++. ..+
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 69999999999888899999999999999999999999999999999999987 4899999998763 134
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++ +|++||+.++.
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~ 112 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGP 112 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHH
Confidence 678999999998875 79999998754
No 113
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.94 E-value=3.5e-26 Score=162.83 Aligned_cols=96 Identities=50% Similarity=0.763 Sum_probs=87.7
Q ss_pred EEEEeeeEEEcCC------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCCh-hhcc
Q psy16345 21 ELVFSGLSVTLDK------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLNK-RWKR 91 (121)
Q Consensus 21 ~i~~~~l~~~~~~------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~-~~~~ 91 (121)
.++++++++.|+. +++++++||++++|++++|+||||||||||+++|+|++ +|++|+|.++|+++.. .+++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4889999999975 68999999999999999999999999999999999999 9999999999998864 4567
Q ss_pred cEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 92 KICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 92 ~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.++|++|++.+++.+|++||+.+..
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~ 107 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA 107 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH
Confidence 8999999999998899999998643
No 114
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=1.7e-26 Score=186.83 Aligned_cols=97 Identities=27% Similarity=0.462 Sum_probs=88.3
Q ss_pred EEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345 21 ELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~ 95 (121)
.++++|+++.| +++++|+|+||++++|+++||+|+||||||||+++|+|++ |++|+|.++|.++. ..++++++|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 59999999755 5678999999999999999999999999999999999999 89999999999886 367889999
Q ss_pred EeeCCCCCCCCCHHHHHhhcccCc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIADE 119 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~~ 119 (121)
|+|++.+|.. |++||+.++.++.
T Consensus 428 v~Q~~~LF~~-TI~eNI~~g~~~~ 450 (588)
T PRK11174 428 VGQNPQLPHG-TLRDNVLLGNPDA 450 (588)
T ss_pred ecCCCcCCCc-CHHHHhhcCCCCC
Confidence 9999999976 9999999986543
No 115
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-26 Score=168.38 Aligned_cols=96 Identities=24% Similarity=0.476 Sum_probs=86.0
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~ 88 (121)
.+++++|+++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 469999999999888899999999999999999999999999999999999875 79999999988631 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++.++|++|++.+++ +|++||+.+..
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~ 117 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGP 117 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHH
Confidence 4667999999998887 79999998753
No 116
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.1e-26 Score=167.80 Aligned_cols=97 Identities=32% Similarity=0.411 Sum_probs=88.3
Q ss_pred cEEEEeeeEEEcCCcc----eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhc
Q psy16345 20 LELVFSGLSVTLDKRP----ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWK 90 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~----~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~ 90 (121)
.+++++|+++.|+.+. +|++|||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|++... ..+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4689999999998876 9999999999999999999999999999999999999999999999988753 457
Q ss_pred ccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345 91 RKICYVLQQDI--FFPELTLRQTLEVSI 116 (121)
Q Consensus 91 ~~i~~v~Q~~~--l~~~ltv~e~l~~~~ 116 (121)
+.+.+|||||. +.|.+||++.+.-++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhh
Confidence 88999999985 889999999887655
No 117
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.5e-26 Score=167.80 Aligned_cols=94 Identities=20% Similarity=0.410 Sum_probs=85.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEEEECCEeCCh----hhcccE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~----~~~~~i 93 (121)
+++++|+++.|+++.+|+++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.. ..++.+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 5889999999988889999999999999999999999999999999999974 689999999998752 456689
Q ss_pred EEEeeCCCCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++|++.+++ .|++||+.++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~ 102 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYA 102 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhH
Confidence 99999999887 5999999875
No 118
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=1.1e-26 Score=191.58 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=89.5
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++|++|+|++ +++|+|+||+|++|+.+||+|+||||||||+|+|+|+++|++|+|.++|.++. ..++++++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 5999999999964 67999999999999999999999999999999999999999999999999985 26789999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
||+|++.+|.. |++||+.++.++
T Consensus 557 ~v~Q~~~lf~g-Ti~eNi~l~~~~ 579 (710)
T TIGR03796 557 MVDQDIFLFEG-TVRDNLTLWDPT 579 (710)
T ss_pred EEecCChhhhc-cHHHHhhCCCCC
Confidence 99999999976 999999987544
No 119
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.3e-26 Score=169.67 Aligned_cols=97 Identities=26% Similarity=0.425 Sum_probs=86.4
Q ss_pred cEEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345 20 LELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i 93 (121)
.+++++|+++.|+ ++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4699999999995 4689999999999999999999999999999999999999999999999998752 456789
Q ss_pred EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
+|++|++. .++.+|++||+.++.
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~ 109 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGL 109 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHH
Confidence 99999974 566789999998753
No 120
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5e-26 Score=168.23 Aligned_cols=96 Identities=25% Similarity=0.422 Sum_probs=85.8
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------hh
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------KR 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~~ 88 (121)
.+++++|+++.|+++++|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++. ..
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 46999999999988889999999999999999999999999999999999986 47999999998873 13
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++++++|++|++.+++ .|+++|+.++.
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~ 118 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGV 118 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhH
Confidence 4678999999998887 79999998753
No 121
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.94 E-value=1.2e-26 Score=187.28 Aligned_cols=98 Identities=32% Similarity=0.568 Sum_probs=91.9
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~ 95 (121)
.|+++|++|.|+ ++++|+|+||++++||.+||+||||||||||+++|+++++|++|+|.++|.++. ..+|++++|
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 499999999998 589999999999999999999999999999999999999999999999999986 368999999
Q ss_pred EeeCCCCCCCCCHHHHHhhcccCc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIADE 119 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~~ 119 (121)
|+|++.+|.. |++||+.++.+++
T Consensus 408 V~Qd~~LF~~-TI~~NI~~g~~~a 430 (567)
T COG1132 408 VSQDPLLFSG-TIRENIALGRPDA 430 (567)
T ss_pred Ecccceeecc-cHHHHHhcCCCCC
Confidence 9999999985 9999999998754
No 122
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.6e-26 Score=167.10 Aligned_cols=95 Identities=26% Similarity=0.448 Sum_probs=85.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--C---CccEEEECCEeCCh------hh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--L---DSGVIRLNKERLNK------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--~---~~G~i~~~g~~~~~------~~ 89 (121)
.++++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 4899999999988889999999999999999999999999999999999986 3 58999999988741 34
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++.++|++|++.+++.+|++||+.++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~ 109 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAG 109 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhH
Confidence 67899999999999889999999864
No 123
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.8e-26 Score=167.20 Aligned_cols=97 Identities=27% Similarity=0.466 Sum_probs=87.0
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~------~ 88 (121)
.+++++|+++.|+++++++++||+|++|++++|+|+||||||||+|+|+|+++|. +|+|.++|.++.. .
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 3689999999998889999999999999999999999999999999999998764 7999999988741 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++.++|++|++.+++.+|++||+.++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~ 110 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGL 110 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHH
Confidence 4667999999999998899999998643
No 124
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.9e-26 Score=163.82 Aligned_cols=93 Identities=27% Similarity=0.478 Sum_probs=82.8
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
|+++|++++|+++. .++||++.+|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++.++|++|+
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 46899999998654 39999999999999999999999999999999999999999999998752 235679999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+|++||+.+..
T Consensus 79 ~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 79 NNLFAHLTVEQNVGLGL 95 (211)
T ss_pred cccCCCCcHHHHHhccc
Confidence 99998899999998754
No 125
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.4e-26 Score=170.55 Aligned_cols=96 Identities=23% Similarity=0.369 Sum_probs=83.9
Q ss_pred EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------hh
Q psy16345 21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------~~ 89 (121)
.++++++++.|+. +++|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4899999999964 469999999999999999999999999999999999999999999999998742 34
Q ss_pred cccEEEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
+++++||||++. .+...|++||+.++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHH
Confidence 678999999873 223469999998754
No 126
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5e-26 Score=170.16 Aligned_cols=96 Identities=27% Similarity=0.361 Sum_probs=85.7
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
+++++|+++.|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. .+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5899999999964 579999999999999999999999999999999999999999999999998752 4466899
Q ss_pred EEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
|++|++. +++..|++||+.++.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~ 107 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGL 107 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhH
Confidence 9999973 566779999998753
No 127
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=4.3e-26 Score=166.44 Aligned_cols=94 Identities=31% Similarity=0.463 Sum_probs=84.0
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCCh----h-hcccEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLNK----R-WKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~----~-~~~~i~ 94 (121)
|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+|+|+|++ +|++|+|.++|+++.. . .+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 46899999998888999999999999999999999999999999999995 7899999999998742 2 234589
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++|++.+++.+|+++|+.+.
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred eeeccccccCCcCHHHHHHHH
Confidence 999999999999999998764
No 128
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.6e-26 Score=169.44 Aligned_cols=96 Identities=23% Similarity=0.274 Sum_probs=84.9
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
+++++|+++.|+ .+++|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 589999999996 5679999999999999999999999999999999999999999999999998752 34668999
Q ss_pred EeeCCC-CCCCCCHHHHHhhcc
Q psy16345 96 VLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
++|++. .++.+|+++|+.++.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~ 105 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGP 105 (274)
T ss_pred EecChhhhhccCcHHHHHHhhH
Confidence 999973 344579999998754
No 129
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.7e-26 Score=167.86 Aligned_cols=95 Identities=24% Similarity=0.395 Sum_probs=85.2
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~ 88 (121)
.+++++|++++|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+.+ |++|+|.++|+++.. .
T Consensus 20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred ceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 35999999999988889999999999999999999999999999999999864 689999999988741 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++. |++||+.++
T Consensus 100 ~~~~i~~v~q~~~~~~~-tv~enl~~~ 125 (268)
T PRK14248 100 LRREIGMVFQKPNPFPK-SIYNNITHA 125 (268)
T ss_pred HhccEEEEecCCccCcc-cHHHHHHHH
Confidence 46689999999988875 999999865
No 130
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=1.5e-26 Score=190.74 Aligned_cols=95 Identities=28% Similarity=0.400 Sum_probs=88.7
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~ 95 (121)
.|+++|++|+|+ ++++|+|+||+|++|+.+||+|+||||||||+|+|+|+++|++|+|.++|.++. ..+|++++|
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 599999999996 478999999999999999999999999999999999999999999999999885 367889999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|+|++.+|+. |++||+.++.
T Consensus 553 v~Q~~~lf~g-TI~eNi~l~~ 572 (708)
T TIGR01193 553 LPQEPYIFSG-SILENLLLGA 572 (708)
T ss_pred EecCceehhH-HHHHHHhccC
Confidence 9999999977 9999999983
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=5.5e-26 Score=168.08 Aligned_cols=96 Identities=26% Similarity=0.422 Sum_probs=86.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCCh---------h
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNK---------R 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~---------~ 88 (121)
+|+++|+++.|+++.+|+++||++.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 589999999999889999999999999999999999999999999999999876 4999999987631 2
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++.++|++|++.+++.+|+++|+.++.
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 111 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGA 111 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhh
Confidence 3567999999999999899999998753
No 132
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.4e-26 Score=169.52 Aligned_cols=96 Identities=22% Similarity=0.356 Sum_probs=84.6
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~ 94 (121)
+++++|+++.|+ ++++|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++. ..+++.++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 378999999995 567999999999999999999999999999999999999999999999999874 23467899
Q ss_pred EEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
|++|++. .+...|++||+.+..
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~ 103 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGP 103 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhH
Confidence 9999975 355679999998754
No 133
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.94 E-value=5.6e-26 Score=165.99 Aligned_cols=95 Identities=37% Similarity=0.575 Sum_probs=86.8
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
++++++++.|+++++|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++.++|++|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 468999999988899999999999999999999999999999999999999999999999998753 345679999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+|+.||+.+..
T Consensus 81 ~~~~~~~t~~enl~~~~ 97 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGL 97 (237)
T ss_pred hhhccCCcHHHHHHhHH
Confidence 99998899999998754
No 134
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.6e-26 Score=167.73 Aligned_cols=97 Identities=23% Similarity=0.359 Sum_probs=86.5
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------ 87 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------ 87 (121)
..+++++|++++|+++++|+++||++.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 346999999999988899999999999999999999999999999999999986 579999999998741
Q ss_pred hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.+++.++|++|++.+++ .|++||+.++.
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~ 125 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFAL 125 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHH
Confidence 34667999999998887 59999998753
No 135
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.3e-26 Score=169.93 Aligned_cols=96 Identities=27% Similarity=0.411 Sum_probs=85.7
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i 93 (121)
+++++|+++.|++ +.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5899999999963 459999999999999999999999999999999999999999999999998752 456789
Q ss_pred EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
+|++|++. +++.+|++||+.++.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~ 107 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGL 107 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhH
Confidence 99999973 566789999998764
No 136
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5e-26 Score=170.62 Aligned_cols=95 Identities=22% Similarity=0.405 Sum_probs=83.9
Q ss_pred EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------
Q psy16345 21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------- 87 (121)
.++++|+++.|++ +++|+++||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999963 369999999999999999999999999999999999999999999999998741
Q ss_pred hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQD--IFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~ 116 (121)
.+++.++||||++ .+++ .|++||+.++.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~ 111 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGP 111 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhH
Confidence 3567899999986 4665 49999998864
No 137
>KOG0058|consensus
Probab=99.94 E-value=1.3e-26 Score=188.17 Aligned_cols=99 Identities=30% Similarity=0.520 Sum_probs=92.1
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.|+++||+|.|.. .++|+|+||+|++||++|||||||+||||+..+|..++.|++|+|.+||.++. +.+|++|
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 5999999999965 46999999999999999999999999999999999999999999999999986 3678999
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIADED 120 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~ 120 (121)
|+|.|+|.||.. |++||+.++.++++
T Consensus 545 g~V~QEPvLFs~-sI~eNI~YG~~~~t 570 (716)
T KOG0058|consen 545 GLVGQEPVLFSG-SIRENIAYGLDNAT 570 (716)
T ss_pred eeeeccceeecc-cHHHHHhcCCCCCC
Confidence 999999999976 99999999997654
No 138
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.94 E-value=5.8e-26 Score=164.07 Aligned_cols=95 Identities=28% Similarity=0.530 Sum_probs=86.0
Q ss_pred EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhc
Q psy16345 22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWK 90 (121)
Q Consensus 22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~ 90 (121)
++++|+++.|+. +.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 678999999964 679999999999999999999999999999999999999999999999998742 245
Q ss_pred ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 91 RKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+.++|++|++.+++.+|+.||+.+..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~ 107 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMAL 107 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHH
Confidence 78999999999998889999998754
No 139
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=3.5e-26 Score=184.80 Aligned_cols=96 Identities=24% Similarity=0.430 Sum_probs=88.8
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.++++|++++|++ +++|+++||+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 5999999999964 679999999999999999999999999999999999999999999999999862 5788899
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||+|++.+|+. |++||+.++.+
T Consensus 421 ~v~Q~~~lf~~-Ti~~Ni~~~~~ 442 (582)
T PRK11176 421 LVSQNVHLFND-TIANNIAYART 442 (582)
T ss_pred EEccCceeecc-hHHHHHhcCCC
Confidence 99999999976 99999999753
No 140
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.4e-26 Score=166.17 Aligned_cols=95 Identities=23% Similarity=0.441 Sum_probs=85.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------hh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~~ 89 (121)
+|+++|+++.|+++++++++||++++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 58999999999888899999999999999999999999999999999999874 89999999988641 34
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++ .|++||+.++.
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~ 108 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGP 108 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHH
Confidence 668999999998887 79999998753
No 141
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.94 E-value=2.2e-26 Score=190.21 Aligned_cols=98 Identities=27% Similarity=0.492 Sum_probs=90.0
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+++++
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 5999999999964 57999999999999999999999999999999999999999999999999985 3578899
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIADE 119 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~ 119 (121)
+||+|++.+|.. |++||+.++.++.
T Consensus 558 ~~v~Q~~~lF~g-TIreNI~~g~~~~ 582 (711)
T TIGR00958 558 ALVGQEPVLFSG-SVRENIAYGLTDT 582 (711)
T ss_pred eEEecCcccccc-CHHHHHhcCCCCC
Confidence 999999999976 9999999987543
No 142
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.94 E-value=3.2e-26 Score=183.36 Aligned_cols=97 Identities=41% Similarity=0.658 Sum_probs=89.3
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++|++|+|++ +++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++. +.++++++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 5999999999965 47999999999999999999999999999999999999999999999999875 36788999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
||+|++.+|+. |++||+.++.++
T Consensus 400 ~v~Q~~~lf~~-ti~~Ni~~~~~~ 422 (529)
T TIGR02857 400 WVPQHPFLFAG-TIAENIRLARPD 422 (529)
T ss_pred EEcCCCcccCc-CHHHHHhccCCC
Confidence 99999999976 999999987654
No 143
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.7e-26 Score=166.28 Aligned_cols=96 Identities=23% Similarity=0.477 Sum_probs=86.0
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~ 88 (121)
.+++++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. .
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 468999999999888899999999999999999999999999999999999875 78999999998742 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.++.++|++|++.+++ +|++||+.+..
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~ 109 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGP 109 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHH
Confidence 4667999999998887 79999998753
No 144
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.6e-26 Score=176.39 Aligned_cols=96 Identities=25% Similarity=0.439 Sum_probs=84.4
Q ss_pred EEEEeeeEEEcCCcc------------------------eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345 21 ELVFSGLSVTLDKRP------------------------ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~------------------------~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G 76 (121)
+|+++|+++.|+.++ +|+++||+|++||+++|+||||||||||+|+|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 477777777776543 89999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCh----h----hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 77 VIRLNKERLNK----R----WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 77 ~i~~~g~~~~~----~----~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|.++|.++.. . +++.++|++|++.+++++|++||+.++.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~ 131 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM 131 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH
Confidence 99999998742 1 2457999999999999999999998764
No 145
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=6.7e-26 Score=183.63 Aligned_cols=95 Identities=22% Similarity=0.386 Sum_probs=89.0
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~ 95 (121)
.++++|++++|++ +++|+|+||++++|+.+||+|+||||||||+++|+|+++|++|+|.++|.++. +.++++++|
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 4999999999964 67999999999999999999999999999999999999999999999999986 367899999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|+|++.+|+. |+++|+.++.
T Consensus 420 v~Q~~~lF~~-Ti~~NI~~~~ 439 (592)
T PRK10790 420 VQQDPVVLAD-TFLANVTLGR 439 (592)
T ss_pred EccCCccccc-hHHHHHHhCC
Confidence 9999999987 9999999986
No 146
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.6e-26 Score=166.79 Aligned_cols=96 Identities=22% Similarity=0.400 Sum_probs=85.4
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--C---CccEEEECCEeCC------hh
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--L---DSGVIRLNKERLN------KR 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--~---~~G~i~~~g~~~~------~~ 88 (121)
.+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|+++. ..
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 35999999999988889999999999999999999999999999999999987 3 5899999999874 13
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++.++|++|++.+++. |++||+.+..
T Consensus 91 ~~~~i~~v~q~~~~~~~-tv~enl~~~~ 117 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQ-SIFDNVAYGP 117 (259)
T ss_pred HhhceEEEecCCccccc-CHHHHHHhHH
Confidence 46679999999988876 9999998753
No 147
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=5.2e-26 Score=169.71 Aligned_cols=95 Identities=32% Similarity=0.420 Sum_probs=85.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC--------ccEEEECCEeCCh----h
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD--------SGVIRLNKERLNK----R 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~--------~G~i~~~g~~~~~----~ 88 (121)
+|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+|+|+|+++|+ +|+|.++|.++.. .
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 378999999998889999999999999999999999999999999999999998 8999999998742 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++.+|++||+.++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 456789999998766668999999875
No 148
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=5.8e-26 Score=181.20 Aligned_cols=96 Identities=23% Similarity=0.351 Sum_probs=87.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~ 95 (121)
+|+++|+++.|+++++|+++||+|.+|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. . .++.++|
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 5999999999988889999999999999999999999999999999999999999999999998742 1 3467999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++.+|++||+.++.
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~ 104 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGR 104 (501)
T ss_pred EEcchhccCCCcHHHHhhhcc
Confidence 999999999999999998753
No 149
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9e-26 Score=165.72 Aligned_cols=95 Identities=24% Similarity=0.439 Sum_probs=84.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------hh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~~ 89 (121)
.++++|+++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.++ ++|+|.++|.++.. .+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 48899999999888899999999999999999999999999999999998763 68999999988742 34
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++ +|+++|+.++.
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~ 108 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGP 108 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHH
Confidence 667999999998887 79999998753
No 150
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.9e-26 Score=169.87 Aligned_cols=95 Identities=25% Similarity=0.437 Sum_probs=83.7
Q ss_pred EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------h
Q psy16345 21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------K 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------~ 87 (121)
.+++++++++|++ +++|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+++. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4889999999964 46999999999999999999999999999999999999999999999999873 1
Q ss_pred hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQD--IFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~ 116 (121)
..++.++||+|++ .+++ .|++||+.++.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~ 111 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFE-ETVEKDICFGP 111 (290)
T ss_pred HHHhhEEEEeeCchhhhhh-hhHHHHHHHHH
Confidence 3456899999987 4554 69999998764
No 151
>KOG0057|consensus
Probab=99.93 E-value=2.7e-26 Score=181.92 Aligned_cols=98 Identities=23% Similarity=0.410 Sum_probs=91.5
Q ss_pred EEEEeeeEEEcCCcc-eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRP-ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~-~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.|+++|+++.|+.++ +|+++||+|++||.+||+|+|||||||++|+|.++.+ ++|+|+++|+++.+ .+|+.|||
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 499999999998866 9999999999999999999999999999999999998 89999999999863 67889999
Q ss_pred EeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIADED 120 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~~~ 120 (121)
||||..||.+ |+.+|+.+|...++
T Consensus 430 VPQd~~LFnd-TIl~NI~YGn~sas 453 (591)
T KOG0057|consen 430 VPQDSVLFND-TILYNIKYGNPSAS 453 (591)
T ss_pred eCCcccccch-hHHHHhhcCCCCcC
Confidence 9999999987 99999999998654
No 152
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=167.57 Aligned_cols=95 Identities=22% Similarity=0.405 Sum_probs=85.7
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------hh
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------KR 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~~ 88 (121)
.+++++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++. ..
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 46999999999988889999999999999999999999999999999999987 68999999998873 13
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++. |++||+.++
T Consensus 103 ~~~~i~~v~q~~~~~~~-tv~eni~~~ 128 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPK-SIYDNVTYG 128 (271)
T ss_pred HhhhEEEEecCCccccc-cHHHHHHHH
Confidence 46789999999988875 999999865
No 153
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=167.27 Aligned_cols=95 Identities=25% Similarity=0.431 Sum_probs=85.7
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------hh
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------KR 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~~ 88 (121)
.+|++++++++|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.++. ..
T Consensus 38 ~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 117 (285)
T PRK14254 38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA 117 (285)
T ss_pred ceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHh
Confidence 46999999999988889999999999999999999999999999999999986 68999999998863 13
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++. |++||+.+.
T Consensus 118 ~~~~i~~v~q~~~l~~~-tv~enl~~~ 143 (285)
T PRK14254 118 LRRRIGMVFQKPNPFPK-SIYDNVAYG 143 (285)
T ss_pred hhccEEEEecCCccCcC-CHHHHHHHH
Confidence 46789999999988875 999999865
No 154
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.2e-26 Score=164.91 Aligned_cols=94 Identities=29% Similarity=0.482 Sum_probs=84.4
Q ss_pred EEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 22 LVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 22 i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
++++|+++.|+++ ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999765 79999999999999999999999999999999999999999999999988642 34667999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++ .|++||+.+..
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~ 100 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGR 100 (234)
T ss_pred eCCCCeecc-ccHHHHhhccC
Confidence 999998886 59999998764
No 155
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=1.3e-25 Score=171.74 Aligned_cols=96 Identities=26% Similarity=0.384 Sum_probs=85.8
Q ss_pred cEEEEeeeEEEcCC-------------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 20 LELVFSGLSVTLDK-------------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 20 ~~i~~~~l~~~~~~-------------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
.+|+++||++.|+. ..+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46999999999952 46899999999999999999999999999999999999999999999999874
Q ss_pred h-------hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345 87 K-------RWKRKICYVLQQD--IFFPELTLRQTLEVS 115 (121)
Q Consensus 87 ~-------~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~ 115 (121)
. .++++++||+|++ .+++.+|+.+|+.+.
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~ 124 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP 124 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH
Confidence 2 2466899999998 588889999999764
No 156
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=4.3e-26 Score=184.60 Aligned_cols=98 Identities=33% Similarity=0.523 Sum_probs=89.8
Q ss_pred cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345 20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i 93 (121)
..++++|++++|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+++.+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 35999999999964 579999999999999999999999999999999999999999999999998863 678899
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
+||+|++.+|+. |++||+.++.++
T Consensus 417 ~~v~Q~~~lf~~-ti~~Ni~~~~~~ 440 (574)
T PRK11160 417 SVVSQRVHLFSA-TLRDNLLLAAPN 440 (574)
T ss_pred eEEcccchhhcc-cHHHHhhcCCCc
Confidence 999999999976 999999998654
No 157
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.6e-26 Score=169.27 Aligned_cols=95 Identities=25% Similarity=0.357 Sum_probs=83.9
Q ss_pred EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------h
Q psy16345 21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------K 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------~ 87 (121)
+|+++|+++.|+. +.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|+++|.++. .
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4889999999963 25999999999999999999999999999999999999999999999999873 1
Q ss_pred hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQD--IFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~ 116 (121)
.+++.++||+|++ .+++ .|++||+.|+.
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~ 110 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGP 110 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHH
Confidence 3567899999987 5665 59999998865
No 158
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.6e-26 Score=180.45 Aligned_cols=95 Identities=29% Similarity=0.429 Sum_probs=87.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
+++++|++++|+++++++++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 5999999999988889999999999999999999999999999999999999999999999998752 23457999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|+|++.+++.+|++||+.++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~ 104 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIG 104 (510)
T ss_pred EeecccccCCCcHHHHhhhc
Confidence 99999999999999999875
No 159
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=167.58 Aligned_cols=94 Identities=22% Similarity=0.365 Sum_probs=82.8
Q ss_pred EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------
Q psy16345 21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------- 87 (121)
.++++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4889999999964 369999999999999999999999999999999999999999999999988641
Q ss_pred hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345 88 RWKRKICYVLQQD--IFFPELTLRQTLEVS 115 (121)
Q Consensus 88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~ 115 (121)
.+++.++|++|++ .+++ .|++||+.+.
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~ 110 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFG 110 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHH
Confidence 3466799999997 4555 5999999865
No 160
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=179.85 Aligned_cols=96 Identities=25% Similarity=0.351 Sum_probs=87.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeCCh-----hhcccE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERLNK-----RWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~-----~~~~~i 93 (121)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|.++.. .+++.+
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 59999999999888899999999999999999999999999999999999986 79999999998752 235679
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+||+|++.+++.+|++||+.++.
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~ 107 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGN 107 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcc
Confidence 99999999999999999998764
No 161
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=5e-26 Score=171.73 Aligned_cols=87 Identities=28% Similarity=0.363 Sum_probs=79.5
Q ss_pred EEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEeeCCCCCCC
Q psy16345 29 VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPE 105 (121)
Q Consensus 29 ~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~ 105 (121)
++|+++++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. .+++.++|++|++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 35777889999999999999999999999999999999999999999999999998752 456789999999999999
Q ss_pred CCHHHHHhhc
Q psy16345 106 LTLRQTLEVS 115 (121)
Q Consensus 106 ltv~e~l~~~ 115 (121)
+|++||+.+.
T Consensus 81 ~tv~e~l~~~ 90 (302)
T TIGR01188 81 LTGRENLEMM 90 (302)
T ss_pred CcHHHHHHHH
Confidence 9999999874
No 162
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=1.2e-25 Score=159.85 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=83.3
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI 101 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~ 101 (121)
+++++++++|+++.+++ +||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++....++.++|++|++.
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 78999999998766665 99999999999999999999999999999999999999999998875433456899999988
Q ss_pred CCCCCCHHHHHhhcc
Q psy16345 102 FFPELTLRQTLEVSI 116 (121)
Q Consensus 102 l~~~ltv~e~l~~~~ 116 (121)
+++.+|++||+.+..
T Consensus 81 ~~~~~tv~~~l~~~~ 95 (195)
T PRK13541 81 LKLEMTVFENLKFWS 95 (195)
T ss_pred CCccCCHHHHHHHHH
Confidence 878889999998743
No 163
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=1e-25 Score=157.69 Aligned_cols=90 Identities=31% Similarity=0.580 Sum_probs=81.3
Q ss_pred EEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 22 LVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 22 i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
++++|++++|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 468999999975 569999999999999999999999999999999999999999999999988742 45678999
Q ss_pred EeeCCCCCCCCCHHHHH
Q psy16345 96 VLQQDIFFPELTLRQTL 112 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l 112 (121)
++|++.+++. |++||+
T Consensus 81 ~~q~~~~~~~-tv~~~l 96 (173)
T cd03246 81 LPQDDELFSG-SIAENI 96 (173)
T ss_pred ECCCCccccC-cHHHHC
Confidence 9999988875 999996
No 164
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=6.4e-26 Score=183.74 Aligned_cols=97 Identities=31% Similarity=0.520 Sum_probs=89.6
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~ 95 (121)
.++++|++|+|++ +++|+++||++++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++. ..+++.++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5999999999965 67999999999999999999999999999999999999999999999999886 267889999
Q ss_pred EeeCCCCCCCCCHHHHHhhcccC
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
|+|++.+|.. |++||+.++.++
T Consensus 414 v~Q~~~lf~~-Ti~~Ni~~~~~~ 435 (588)
T PRK13657 414 VFQDAGLFNR-SIEDNIRVGRPD 435 (588)
T ss_pred EecCcccccc-cHHHHHhcCCCC
Confidence 9999999976 999999998654
No 165
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=6.8e-26 Score=175.08 Aligned_cols=88 Identities=27% Similarity=0.418 Sum_probs=80.7
Q ss_pred EEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hh----cccEEEEeeCC
Q psy16345 29 VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RW----KRKICYVLQQD 100 (121)
Q Consensus 29 ~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~----~~~i~~v~Q~~ 100 (121)
+.|+++.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+ ++.++||+|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 35788889999999999999999999999999999999999999999999999999852 23 67899999999
Q ss_pred CCCCCCCHHHHHhhcc
Q psy16345 101 IFFPELTLRQTLEVSI 116 (121)
Q Consensus 101 ~l~~~ltv~e~l~~~~ 116 (121)
.+|+++||+||+.++.
T Consensus 81 ~l~~~~TV~eNi~~~~ 96 (363)
T TIGR01186 81 ALFPHMTILQNTSLGP 96 (363)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 9999999999999864
No 166
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.93 E-value=4.6e-26 Score=187.54 Aligned_cols=97 Identities=32% Similarity=0.508 Sum_probs=89.7
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++|++|+|++ +++|+|+||+|++|+.+||+|+||||||||+|+|+|+++|++|+|.++|.++. ..+|+.++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 5999999999963 57999999999999999999999999999999999999999999999999986 36788999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
||+|++.+|+. |++||+.++.++
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~~ 565 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAPY 565 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCCC
Confidence 99999999976 999999998654
No 167
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=164.39 Aligned_cols=95 Identities=24% Similarity=0.450 Sum_probs=85.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------hh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~~ 89 (121)
+|+++|++++|+.+++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 5899999999988899999999999999999999999999999999999986 479999999998631 34
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++ .|++||+.++.
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~ 109 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGL 109 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHH
Confidence 667999999998886 69999998653
No 168
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.93 E-value=1.3e-25 Score=166.44 Aligned_cols=95 Identities=29% Similarity=0.510 Sum_probs=83.7
Q ss_pred EEEEeeeEEEcC---------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----
Q psy16345 21 ELVFSGLSVTLD---------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~---------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---- 87 (121)
+|+++|+++.|+ ++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 488999999995 3679999999999999999999999999999999999999999999999988742
Q ss_pred ---hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345 88 ---RWKRKICYVLQQD--IFFPELTLRQTLEVS 115 (121)
Q Consensus 88 ---~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~ 115 (121)
.+++.++|++|++ .+++.+|++||+.+.
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 114 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP 114 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHH
Confidence 1456799999997 466778999998654
No 169
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=167.96 Aligned_cols=95 Identities=23% Similarity=0.406 Sum_probs=83.3
Q ss_pred EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------
Q psy16345 21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------- 87 (121)
.++++|+++.|++ +.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5889999999974 469999999999999999999999999999999999999999999999998631
Q ss_pred hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQD--IFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~ 116 (121)
..++.++|++|++ .++ .+|++||+.++.
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~ 111 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGP 111 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHH
Confidence 3456799999997 355 579999998753
No 170
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=169.78 Aligned_cols=97 Identities=22% Similarity=0.389 Sum_probs=84.7
Q ss_pred ccEEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------
Q psy16345 19 PLELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------ 87 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------ 87 (121)
..+|+++|+++.|++ +++|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 346999999999964 359999999999999999999999999999999999999999999999977531
Q ss_pred --------------hhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345 88 --------------RWKRKICYVLQQD--IFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 --------------~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~ 116 (121)
.+++.++||+|++ .+++. |++||+.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~ 142 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGP 142 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhH
Confidence 3467899999987 46654 9999998864
No 171
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.9e-25 Score=164.23 Aligned_cols=95 Identities=25% Similarity=0.493 Sum_probs=85.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCCh------hh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLNK------RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~~------~~ 89 (121)
.++++|++++|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 588999999998888999999999999999999999999999999999999987 6999999988641 34
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++. |++||+.+..
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~ 109 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGP 109 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHH
Confidence 6789999999998875 9999998753
No 172
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=164.29 Aligned_cols=94 Identities=32% Similarity=0.427 Sum_probs=84.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CC---CccEEEECCEeCC------hhh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KL---DSGVIRLNKERLN------KRW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~---~~G~i~~~g~~~~------~~~ 89 (121)
+++++|++++|+++.+++++||+|.+|++++|+|+||||||||+++|+|+. .| ++|+|.++|.++. ..+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 589999999998888999999999999999999999999999999999985 36 4899999998873 134
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++.++|++|++.+++ +|++||+.++
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~ 109 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYG 109 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHH
Confidence 668999999998887 7999999875
No 173
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=165.58 Aligned_cols=97 Identities=25% Similarity=0.436 Sum_probs=85.9
Q ss_pred CccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------
Q psy16345 18 RPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------ 86 (121)
Q Consensus 18 ~~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------ 86 (121)
.+.+|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|++++ ++|+|.++|.++.
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 44579999999999888899999999999999999999999999999999999863 5899999998873
Q ss_pred hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 87 KRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 87 ~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
..+++.++|++|++.+++. |+++|+.++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~-tv~~nl~~~ 124 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPK-SIYENIAFA 124 (274)
T ss_pred HHHhhcEEEEccCCccccc-cHHHHHHhH
Confidence 1346789999999988875 999999875
No 174
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.3e-25 Score=163.55 Aligned_cols=95 Identities=34% Similarity=0.509 Sum_probs=86.4
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
+++++++++|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..++.++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 468999999988899999999999999999999999999999999999999999999999998753 235679999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+|+++|+.+..
T Consensus 81 ~~~~~~~t~~~nl~~~~ 97 (232)
T cd03300 81 YALFPHLTVFENIAFGL 97 (232)
T ss_pred cccCCCCcHHHHHHHHH
Confidence 99988889999998653
No 175
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=1.7e-25 Score=178.92 Aligned_cols=96 Identities=26% Similarity=0.470 Sum_probs=87.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~ 95 (121)
+|+++|++++|+++.+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.++.. . .++.++|
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 5999999999998889999999999999999999999999999999999999999999999988742 2 2356999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++.+|++||+.++.
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~ 111 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGL 111 (510)
T ss_pred EeccCccCCCCcHHHHhhccc
Confidence 999999999999999998764
No 176
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1e-25 Score=167.58 Aligned_cols=95 Identities=21% Similarity=0.337 Sum_probs=83.5
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~ 94 (121)
+|+++|++++|+++.+|+++||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.++|+++. ..+++.++
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 378999999998888999999999999999999999999999999999999999999999999873 13456799
Q ss_pred EEeeCCCC-CCCCCHHHHHhhc
Q psy16345 95 YVLQQDIF-FPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l-~~~ltv~e~l~~~ 115 (121)
|++|++.+ +...++.+|+.+.
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~ 102 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFS 102 (271)
T ss_pred EEeeChhhccccccHHHHHHHH
Confidence 99999752 3345899998764
No 177
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-25 Score=163.87 Aligned_cols=96 Identities=29% Similarity=0.470 Sum_probs=85.0
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------~ 88 (121)
.+|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.++ ++|+|.++|+++.. .
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 369999999999988999999999999999999999999999999999998753 48999999988742 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.++.++|++|++.+++. |++||+.++.
T Consensus 85 ~~~~i~~~~q~~~~~~~-tv~eni~~~~ 111 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPK-SIYENVAYGP 111 (253)
T ss_pred hhceEEEEecCCccCcc-cHHHHHHhhH
Confidence 45679999999988875 9999998754
No 178
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=1.5e-25 Score=161.18 Aligned_cols=92 Identities=32% Similarity=0.576 Sum_probs=83.0
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
++++|+++.|+. .++++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+++.++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 368999999974 5789999999999999999999999999999999999999999999998753 356779999999
Q ss_pred CCCCCCCCHHHHHhhc
Q psy16345 100 DIFFPELTLRQTLEVS 115 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~ 115 (121)
+.+++.+|++||+.+.
T Consensus 79 ~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLG 94 (213)
T ss_pred CccCCCCcHHHHHHhH
Confidence 9999889999999764
No 179
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.93 E-value=9.7e-26 Score=158.35 Aligned_cols=90 Identities=33% Similarity=0.499 Sum_probs=81.1
Q ss_pred EEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345 22 LVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v 96 (121)
++++++++.|+++ ++++++||++++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.. .+++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999999764 79999999999999999999999999999999999999999999999987642 356789999
Q ss_pred eeCCCCCCCCCHHHHH
Q psy16345 97 LQQDIFFPELTLRQTL 112 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l 112 (121)
+|++.+++ .|++||+
T Consensus 81 ~q~~~~~~-~tv~~~i 95 (178)
T cd03247 81 NQRPYLFD-TTLRNNL 95 (178)
T ss_pred ccCCeeec-ccHHHhh
Confidence 99998886 5999997
No 180
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=8.6e-26 Score=163.70 Aligned_cols=95 Identities=32% Similarity=0.572 Sum_probs=85.4
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.++++|+++.|++ +.+++++||++++|++++|+|||||||||||++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3789999999975 579999999999999999999999999999999999999999999999988742 45677999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++. |++||+.+..
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~ 101 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGR 101 (229)
T ss_pred ecCCchhhhh-HHHHHHhccC
Confidence 9999988876 9999998764
No 181
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=167.64 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=84.5
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i 93 (121)
+|+++|+++.|+ ++.+|+++||+|.+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++. ..+++.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 599999999996 578999999999999999999999999999999999999999999999999873 2456789
Q ss_pred EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
+|++|++. .+...|++||+.++.
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~ 108 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGA 108 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHH
Confidence 99999973 233569999998743
No 182
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=167.27 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=85.6
Q ss_pred cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---cEEEECCEeCCh----hhc
Q psy16345 20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---GVIRLNKERLNK----RWK 90 (121)
Q Consensus 20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~----~~~ 90 (121)
.+++++|+++.|++ +++++++||+|++|+++||+|+||||||||+++|+|+++|++ |+|.++|.++.. .++
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 36999999999964 569999999999999999999999999999999999999987 899999998852 346
Q ss_pred ccEEEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 91 RKICYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 91 ~~i~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
++++|++|++. +++..|++||+.+..
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~ 110 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGL 110 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhH
Confidence 68999999984 566789999998753
No 183
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=165.87 Aligned_cols=97 Identities=25% Similarity=0.375 Sum_probs=85.8
Q ss_pred cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345 20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i 93 (121)
.+++++|+++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 35999999999975 459999999999999999999999999999999999999999999999998742 456789
Q ss_pred EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
+|++|++. +++..++.+|+.+..
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~ 109 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGL 109 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhH
Confidence 99999985 666779999988753
No 184
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-25 Score=157.14 Aligned_cols=90 Identities=39% Similarity=0.631 Sum_probs=81.2
Q ss_pred EEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 22 LVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 22 i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
++++++++.|+++ .+++++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999775 79999999999999999999999999999999999999999999999988742 34667999
Q ss_pred EeeCCCCCCCCCHHHHH
Q psy16345 96 VLQQDIFFPELTLRQTL 112 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l 112 (121)
++|++.+++ .|++||+
T Consensus 81 ~~~~~~~~~-~t~~e~l 96 (171)
T cd03228 81 VPQDPFLFS-GTIRENI 96 (171)
T ss_pred EcCCchhcc-chHHHHh
Confidence 999998876 5999996
No 185
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.9e-25 Score=178.22 Aligned_cols=96 Identities=28% Similarity=0.454 Sum_probs=88.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
+++++|+++.|+++++|+++||++++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 5899999999988889999999999999999999999999999999999999999999999988741 34678999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++.+|+++|+.++.
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~ 104 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQ 104 (501)
T ss_pred EEechhccCCCCHHHHHHhcc
Confidence 999999999999999998753
No 186
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-25 Score=164.94 Aligned_cols=94 Identities=24% Similarity=0.462 Sum_probs=84.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC------hhh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------KRW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------~~~ 89 (121)
+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++| ++|+|.++|+++. ..+
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 58999999999888899999999999999999999999999999999999885 4899999998863 134
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++.++|++|++.+++ +|++||+.++
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~ 111 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYG 111 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHH
Confidence 668999999998887 7999999875
No 187
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=1.3e-25 Score=162.85 Aligned_cols=94 Identities=38% Similarity=0.640 Sum_probs=85.8
Q ss_pred EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEEEECCEeCCh-hhcccE
Q psy16345 22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVIRLNKERLNK-RWKRKI 93 (121)
Q Consensus 22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~-~~~~~i 93 (121)
+.+++++++|.. +++++++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++.. .+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 578999999954 589999999999999999999999999999999999999 899999999998753 456789
Q ss_pred EEEeeCCCCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++|++.+++.+|++||+.++
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHH
Confidence 9999999999999999999875
No 188
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.2e-25 Score=166.50 Aligned_cols=96 Identities=22% Similarity=0.380 Sum_probs=86.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh-----hh
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK-----RW 89 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~-----~~ 89 (121)
.+++++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 20 ~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred cEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 368999999999988999999999999999999999999999999999999985 69999999988742 35
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++ .|+++|+.++.
T Consensus 100 ~~~i~~v~q~~~l~~-~tv~eni~~~~ 125 (276)
T PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNVLAGV 125 (276)
T ss_pred hhheEEeccCCccCC-ccHHHHHHHHH
Confidence 678999999998887 79999998753
No 189
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.9e-25 Score=162.53 Aligned_cols=92 Identities=30% Similarity=0.507 Sum_probs=82.7
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
++++|++++|++.. .++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++.++|++|+
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 78999999997643 49999999999999999999999999999999999999999999998752 234679999999
Q ss_pred CCCCCCCCHHHHHhhc
Q psy16345 100 DIFFPELTLRQTLEVS 115 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~ 115 (121)
+.+++.+|+.||+.+.
T Consensus 80 ~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 80 NNLFSHLTVAQNIGLG 95 (232)
T ss_pred cccccCCcHHHHHhcc
Confidence 9999989999999875
No 190
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.7e-25 Score=165.94 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=84.1
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
+++++|++++|+ .+.+|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+++.. .+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 488999999995 4679999999999999999999999999999999999999999999999998742 45678999
Q ss_pred EeeCCC-CCCCCCHHHHHhhcc
Q psy16345 96 VLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
++|++. .+...|++||+.++.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~ 104 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGP 104 (277)
T ss_pred EecCcccccccccHHHHHHhHH
Confidence 999974 233579999998643
No 191
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-25 Score=168.87 Aligned_cols=95 Identities=25% Similarity=0.420 Sum_probs=82.1
Q ss_pred EEEEeeeEEEcCCc-----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---------
Q psy16345 21 ELVFSGLSVTLDKR-----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------- 86 (121)
Q Consensus 21 ~i~~~~l~~~~~~~-----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------- 86 (121)
.|+++|+++.|+++ .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999653 5999999999999999999999999999999999999999999999876531
Q ss_pred -------------------hhhcccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345 87 -------------------KRWKRKICYVLQQD--IFFPELTLRQTLEVSI 116 (121)
Q Consensus 87 -------------------~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~ 116 (121)
..+++.++||||++ .++ ..||+||+.|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~ 131 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGP 131 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhH
Confidence 23467899999986 355 469999998864
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.5e-25 Score=164.84 Aligned_cols=95 Identities=27% Similarity=0.478 Sum_probs=85.8
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~ 88 (121)
.+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 24 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~ 103 (272)
T PRK14236 24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAE 103 (272)
T ss_pred cEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHH
Confidence 36999999999988889999999999999999999999999999999999987 479999999998742 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++. |++||+.+.
T Consensus 104 ~~~~i~~v~q~~~l~~~-tv~enl~~~ 129 (272)
T PRK14236 104 LRRRVGMVFQRPNPFPK-SIYENVVYG 129 (272)
T ss_pred HhccEEEEecCCccCcc-cHHHHHHHH
Confidence 46789999999988886 999999875
No 193
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=1.2e-25 Score=163.76 Aligned_cols=94 Identities=24% Similarity=0.459 Sum_probs=83.5
Q ss_pred EEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 22 LVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 22 i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
++++|++++|+. +++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999963 579999999999999999999999999999999999999999999999988642 34677999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++.+++ .|++||+.+..
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~ 100 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALAD 100 (237)
T ss_pred EcCCchhcc-chHHHHhhccC
Confidence 999988775 59999998754
No 194
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=2.3e-25 Score=157.03 Aligned_cols=91 Identities=30% Similarity=0.425 Sum_probs=82.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
+++++|++++| +++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++++|
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 58999999998 9999999999999999999999999999999999999999999999988752 34668999
Q ss_pred EeeCC---CCCCCCCHHHHHhhc
Q psy16345 96 VLQQD---IFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~---~l~~~ltv~e~l~~~ 115 (121)
++|++ .+++.+|++||+.+.
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHH
Confidence 99985 477888999999764
No 195
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=163.73 Aligned_cols=95 Identities=25% Similarity=0.492 Sum_probs=85.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC-----hhhc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN-----KRWK 90 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~-----~~~~ 90 (121)
+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999888999999999999999999999999999999999999886 5899999998863 2456
Q ss_pred ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 91 RKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+.++|++|++.+++ .|++||+.++.
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~ 107 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGL 107 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHH
Confidence 67999999998887 79999998753
No 196
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=171.71 Aligned_cols=93 Identities=31% Similarity=0.460 Sum_probs=83.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhccc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRK 92 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~ 92 (121)
||++ |++++|+++. + ++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.
T Consensus 1 ~l~~-~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 3677 9999998754 3 8999999999999999999999999999999999999999999988642 24678
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++|++.+|+++|++||+.++.
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~ 101 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGM 101 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhh
Confidence 999999999999999999999865
No 197
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.93 E-value=9.7e-26 Score=181.90 Aligned_cols=97 Identities=28% Similarity=0.488 Sum_probs=88.9
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.|+++|++++|+. +.+|+++||++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++. ..+++.+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 5999999999964 57999999999999999999999999999999999999999999999999875 2567889
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
+|++|++.+|+. |++||+.++.++
T Consensus 417 ~~~~Q~~~lf~~-Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 417 ALVPQDPVLFAA-SVMENIRYGRPD 440 (576)
T ss_pred eEEccCCccccc-cHHHHHhcCCCC
Confidence 999999999976 999999997654
No 198
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.7e-25 Score=162.60 Aligned_cols=95 Identities=24% Similarity=0.369 Sum_probs=84.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--C---CccEEEECCEeCC------hh
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--L---DSGVIRLNKERLN------KR 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--~---~~G~i~~~g~~~~------~~ 88 (121)
.+++++|++++|+++++|+++||+|.+|++++|+|+||||||||+++|+|+.+ | ++|+|.++|.++. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 35899999999998889999999999999999999999999999999999865 4 4899999998873 13
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++ .|+++|+.+.
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~ 109 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYG 109 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHH
Confidence 4668999999998887 6999999875
No 199
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.3e-25 Score=165.63 Aligned_cols=96 Identities=23% Similarity=0.390 Sum_probs=85.2
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~ 88 (121)
..+++++++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. .
T Consensus 38 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~ 117 (286)
T PRK14275 38 PHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117 (286)
T ss_pred eEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence 46899999999988889999999999999999999999999999999999864 489999999988631 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++.++|++|++.+++. |++||+.++.
T Consensus 118 ~~~~i~~v~q~~~l~~~-tv~enl~~~~ 144 (286)
T PRK14275 118 LRKKIGMVFQKPNPFPK-SIFDNIAYGP 144 (286)
T ss_pred hhhcEEEECCCCCCCcc-CHHHHHHhHH
Confidence 46689999999988875 9999998753
No 200
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=2e-25 Score=160.94 Aligned_cols=95 Identities=34% Similarity=0.520 Sum_probs=84.6
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.++++++++.|++ +.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.. .+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 3789999999975 579999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|++|++.+++ .|++||+.+..
T Consensus 82 ~~~q~~~~~~-~tv~e~l~~~~ 102 (220)
T cd03245 82 YVPQDVTLFY-GTLRDNITLGA 102 (220)
T ss_pred EeCCCCcccc-chHHHHhhcCC
Confidence 9999998886 59999997753
No 201
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-25 Score=165.85 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=83.0
Q ss_pred EEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEE
Q psy16345 22 LVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~ 94 (121)
++++|+++.|+ .+++++++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++. ..+++.++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 78999999996 467999999999999999999999999999999999999999999999999873 13467899
Q ss_pred EEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
|++|++. .+...|++||+.++.
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~ 104 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGP 104 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHH
Confidence 9999973 233469999998753
No 202
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.3e-26 Score=164.25 Aligned_cols=96 Identities=27% Similarity=0.382 Sum_probs=88.7
Q ss_pred EEEEeeeEEEcCCcc-eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRP-ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~-~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v 96 (121)
|+++.+++++|+..+ +++||||++++|+++||+|||||||||+||+|++++.|++|.|.++|.+..+ ..+++||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 478999999999865 9999999999999999999999999999999999999999999999988753 568899999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+.+..++..||++||+.|..
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa 100 (245)
T COG4555 81 FGERGLYARLTARENLKYFA 100 (245)
T ss_pred cCCcChhhhhhHHHHHHHHH
Confidence 98888999999999998754
No 203
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1e-25 Score=167.55 Aligned_cols=93 Identities=26% Similarity=0.417 Sum_probs=84.5
Q ss_pred EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h----hcccEE
Q psy16345 23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R----WKRKIC 94 (121)
Q Consensus 23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~----~~~~i~ 94 (121)
.++++++.|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. . .+++++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 56799999999999999999999999999999999999999999999999999999999988742 1 235799
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++|++.+++.+|++||+.+.
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~ 126 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFG 126 (269)
T ss_pred EEecCcccCCCCcHHHHHHHH
Confidence 999999999889999999875
No 204
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=2.8e-25 Score=159.11 Aligned_cols=94 Identities=29% Similarity=0.465 Sum_probs=84.6
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.+++++++++|++ +.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 5899999999975 479999999999999999999999999999999999999999999999998742 3567899
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++|++.+++. |+++|+.+.
T Consensus 86 ~v~q~~~~~~~-tv~~~l~~~ 105 (207)
T cd03369 86 IIPQDPTLFSG-TIRSNLDPF 105 (207)
T ss_pred EEecCCcccCc-cHHHHhccc
Confidence 99999988875 999999754
No 205
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.93 E-value=3.2e-25 Score=164.66 Aligned_cols=95 Identities=27% Similarity=0.396 Sum_probs=83.4
Q ss_pred EEEEeeeEEEcCC---------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----
Q psy16345 21 ELVFSGLSVTLDK---------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~---------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---- 87 (121)
+|+++|++++|+. +++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 5899999999962 469999999999999999999999999999999999999999999999988752
Q ss_pred hhcccEEEEeeCCC--CCCCCCHHHHHhhc
Q psy16345 88 RWKRKICYVLQQDI--FFPELTLRQTLEVS 115 (121)
Q Consensus 88 ~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~ 115 (121)
.+++.++|++|++. +++.+|+.+++.+.
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 113 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFP 113 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHH
Confidence 23457999999975 56778999998753
No 206
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-25 Score=162.32 Aligned_cols=96 Identities=21% Similarity=0.391 Sum_probs=84.3
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC---CCC--CccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR---VKL--DSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl---~~~--~~G~i~~~g~~~~~------~ 88 (121)
.+++++|+++.|+++++|+++||++++|++++|+|+||||||||+++|+|+ .+| ++|+|.++|.++.. .
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 368999999999888899999999999999999999999999999999997 454 58999999998742 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++.++|++|++.+++ .|++||+.++.
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~ 108 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGL 108 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHH
Confidence 4667999999998887 59999998753
No 207
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=2.2e-25 Score=160.82 Aligned_cols=93 Identities=31% Similarity=0.540 Sum_probs=83.7
Q ss_pred EEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 22 LVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 22 i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
++++|++++|+. +++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 789999999964 479999999999999999999999999999999999999999999999998742 45678999
Q ss_pred EeeCCCCCCCCCHHHHHhhc
Q psy16345 96 VLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|++.+++ .|++||+.+.
T Consensus 83 ~~q~~~l~~-~tv~enl~~~ 101 (221)
T cd03244 83 IPQDPVLFS-GTIRSNLDPF 101 (221)
T ss_pred ECCCCcccc-chHHHHhCcC
Confidence 999998876 4999998754
No 208
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.8e-26 Score=179.78 Aligned_cols=101 Identities=35% Similarity=0.613 Sum_probs=92.2
Q ss_pred ccEEEEeeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 19 PLELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
+..++.+++++.|++. ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+.. ..|++++
T Consensus 318 ~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred CceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 3456677999999764 9999999999999999999999999999999999999999999999998875 3689999
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIADED 120 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~ 120 (121)
+||+|+|.+|+. |++||+.++.++.+
T Consensus 398 ~~v~Q~p~lf~g-TireNi~l~~~~~s 423 (559)
T COG4988 398 SWVSQNPYLFAG-TIRENILLARPDAS 423 (559)
T ss_pred eeeCCCCccccc-cHHHHhhccCCcCC
Confidence 999999999988 99999999987654
No 209
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.93 E-value=2.5e-25 Score=160.96 Aligned_cols=95 Identities=35% Similarity=0.444 Sum_probs=82.0
Q ss_pred EEEEeeeEEEcCC-------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC--CE--eCCh--
Q psy16345 21 ELVFSGLSVTLDK-------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN--KE--RLNK-- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~-------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~--g~--~~~~-- 87 (121)
+++++|++++|+. +.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++ |. ++..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999952 479999999999999999999999999999999999999999999998 42 3321
Q ss_pred -----h-hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 88 -----R-WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 88 -----~-~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
. +++.++|++|++.+++.+|++||+.+.
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 1 235799999999999999999999764
No 210
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.1e-25 Score=161.25 Aligned_cols=94 Identities=36% Similarity=0.561 Sum_probs=84.9
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
|++++++++|+++ +++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++.++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4689999999764 8999999999999999999999999999999999999999999999998753 345689999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+|+.||+.+..
T Consensus 80 ~~~~~~~t~~e~l~~~~ 96 (235)
T cd03299 80 YALFPHMTVYKNIAYGL 96 (235)
T ss_pred CccCCCccHHHHHHHHH
Confidence 99998899999998753
No 211
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.2e-25 Score=162.18 Aligned_cols=95 Identities=25% Similarity=0.435 Sum_probs=84.8
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~ 88 (121)
++++++|+++.|+++++++++||+|.+|++++|+|+||||||||+++|+|+.. |++|+|.++|.++.. .
T Consensus 2 ~~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred cEEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 46899999999988889999999999999999999999999999999999864 389999999988742 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++. |+++|+.++
T Consensus 82 ~~~~i~~~~q~~~~~~~-t~~~nl~~~ 107 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPK-SIFDNVAYG 107 (250)
T ss_pred HhhheEEEecCCccCcc-hHHHHHHhH
Confidence 46789999999988875 999999865
No 212
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.5e-25 Score=161.33 Aligned_cols=96 Identities=29% Similarity=0.432 Sum_probs=87.6
Q ss_pred EEEEeeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~ 94 (121)
++++++++++|++. .+++++||++++|+.++|+|+||||||||+++|+|+++|++|.|.++|.++. ..+++++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 58999999999775 8999999999999999999999999999999999999999999999999865 26788999
Q ss_pred EEeeCC--CCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQD--IFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~--~l~~~ltv~e~l~~~~~ 117 (121)
||||+| ++|.. ||++.++|+..
T Consensus 83 ~VfQnpd~q~~~~-tV~~evafg~~ 106 (235)
T COG1122 83 LVFQNPDDQLFGP-TVEDEVAFGLE 106 (235)
T ss_pred EEEECcccccccC-cHHHHHhhchh
Confidence 999998 46654 99999999875
No 213
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.7e-25 Score=161.77 Aligned_cols=94 Identities=31% Similarity=0.512 Sum_probs=84.2
Q ss_pred EEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345 22 LVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v 96 (121)
++++|++++|+ ++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 46899999995 5779999999999999999999999999999999999999999999999988742 456679999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++ .|++||+.+..
T Consensus 81 ~q~~~~~~-~tv~~nl~~~~ 99 (236)
T cd03253 81 PQDTVLFN-DTIGYNIRYGR 99 (236)
T ss_pred CCCChhhc-chHHHHHhhcC
Confidence 99998886 59999998764
No 214
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=2.6e-25 Score=158.93 Aligned_cols=85 Identities=33% Similarity=0.464 Sum_probs=78.3
Q ss_pred EEEeeeEEEcCCc-----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEE
Q psy16345 22 LVFSGLSVTLDKR-----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~~-----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v 96 (121)
++++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++| +++|+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---------~i~~~ 71 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------SIAYV 71 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---------EEEEE
Confidence 4689999999763 799999999999999999999999999999999999999999999997 59999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++ .|++||+.+..
T Consensus 72 ~q~~~l~~-~t~~enl~~~~ 90 (204)
T cd03250 72 SQEPWIQN-GTIRENILFGK 90 (204)
T ss_pred ecCchhcc-CcHHHHhccCC
Confidence 99999885 59999998864
No 215
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.4e-25 Score=164.27 Aligned_cols=95 Identities=25% Similarity=0.399 Sum_probs=84.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------hhh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------KRW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------~~~ 89 (121)
+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+|+|+|+++ |++|+|.++|.++. ..+
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 5999999999988889999999999999999999999999999999999976 37899999998863 234
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++.+++. |++||+.++.
T Consensus 90 ~~~i~~v~q~~~~~~~-tv~enl~~~~ 115 (264)
T PRK14243 90 RRRIGMVFQKPNPFPK-SIYDNIAYGA 115 (264)
T ss_pred hhhEEEEccCCccccc-cHHHHHHhhh
Confidence 6679999999988874 9999998753
No 216
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=2.4e-25 Score=179.35 Aligned_cols=96 Identities=30% Similarity=0.520 Sum_probs=88.6
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.++++|++++|.+ +++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. +.++++++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 5999999999964 67999999999999999999999999999999999999999999999999875 35788899
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|++|++.+|.. |++||+.++.+
T Consensus 410 ~v~Q~~~lf~~-Ti~~Ni~~~~~ 431 (571)
T TIGR02203 410 LVSQDVVLFND-TIANNIAYGRT 431 (571)
T ss_pred EEccCcccccc-cHHHHHhcCCC
Confidence 99999999976 99999998864
No 217
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.9e-25 Score=164.06 Aligned_cols=96 Identities=25% Similarity=0.355 Sum_probs=85.2
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i 93 (121)
+++++|++++|++ ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 5899999999974 359999999999999999999999999999999999999999999999998752 456789
Q ss_pred EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
+|++|++. +++..|+.||+.++.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~ 107 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGM 107 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhH
Confidence 99999974 566779999998653
No 218
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.2e-25 Score=165.16 Aligned_cols=95 Identities=22% Similarity=0.393 Sum_probs=82.8
Q ss_pred EEEEeeeEEEcCCc-----ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---------
Q psy16345 21 ELVFSGLSVTLDKR-----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--------- 86 (121)
Q Consensus 21 ~i~~~~l~~~~~~~-----~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--------- 86 (121)
.|+++|++++|+++ .+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 48999999999764 4999999999999999999999999999999999999999999999998763
Q ss_pred hhhcccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345 87 KRWKRKICYVLQQDI--FFPELTLRQTLEVSI 116 (121)
Q Consensus 87 ~~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~ 116 (121)
..+++.++|++|++. +++ .|++||+.++.
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~ 116 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGP 116 (289)
T ss_pred HHHhccEEEEEeCcchhhhh-hHHHHHHHHHH
Confidence 134667999999973 444 59999998753
No 219
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.93 E-value=2.1e-25 Score=162.61 Aligned_cols=94 Identities=29% Similarity=0.468 Sum_probs=83.2
Q ss_pred EEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 22 LVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
++++|+++.|++ +++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 469999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|++|++.+++ .|++||+.+..
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~ 101 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGK 101 (238)
T ss_pred EECCchhhhh-hhHHHHhhccC
Confidence 9999998876 59999998754
No 220
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=2e-25 Score=161.65 Aligned_cols=96 Identities=25% Similarity=0.446 Sum_probs=85.2
Q ss_pred cEEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhccc
Q psy16345 20 LELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRK 92 (121)
Q Consensus 20 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~ 92 (121)
.+++++++++.|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 35999999999964 369999999999999999999999999999999999999999999999987642 34567
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++|++|++.+++ .|++||+.++.
T Consensus 90 i~~~~q~~~l~~-~tv~~nl~~~~ 112 (226)
T cd03248 90 VSLVGQEPVLFA-RSLQDNIAYGL 112 (226)
T ss_pred EEEEecccHHHh-hhHHHHhcccc
Confidence 999999998876 59999998754
No 221
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=6.7e-25 Score=161.96 Aligned_cols=94 Identities=30% Similarity=0.401 Sum_probs=83.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe-----CCh----h---
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER-----LNK----R--- 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-----~~~----~--- 88 (121)
+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|++ +.. .
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence 5999999999988889999999999999999999999999999999999999999999999987 531 1
Q ss_pred -hcccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345 89 -WKRKICYVLQQDI--FFPELTLRQTLEV 114 (121)
Q Consensus 89 -~~~~i~~v~Q~~~--l~~~ltv~e~l~~ 114 (121)
+++.++|++|++. +++.+|+.+|+.+
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~ 114 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGE 114 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHH
Confidence 2457999999974 6677789988864
No 222
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.1e-25 Score=165.21 Aligned_cols=97 Identities=27% Similarity=0.471 Sum_probs=86.4
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------ 87 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------ 87 (121)
..+|+++|+++.|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred CceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 346999999999988899999999999999999999999999999999999986 689999999988642
Q ss_pred hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.+++.++|++|++.+++. |++||+.++.
T Consensus 123 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~ 150 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPK-SIRENISYGP 150 (305)
T ss_pred HHhhceEEEccCCccccc-cHHHHHHhHH
Confidence 345689999999988875 9999998753
No 223
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.1e-25 Score=162.47 Aligned_cols=97 Identities=26% Similarity=0.449 Sum_probs=85.5
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC-------
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN------- 86 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~------- 86 (121)
..+|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 3469999999999888999999999999999999999999999999999999875 7899999987652
Q ss_pred -hhhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 87 -KRWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 87 -~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
..+++.++|++|++.+++. |++||+.++.
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~ 123 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGL 123 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHH
Confidence 1346789999999998886 9999998753
No 224
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.9e-25 Score=161.72 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=86.3
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh------
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK------ 87 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~------ 87 (121)
+..+.++.++++|+++++|+++||++++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3458899999999988999999999999999999999999999999999999986 79999999998731
Q ss_pred hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.+++.++|++|++.++ .+|++||+.++.
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~ 113 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGL 113 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHH
Confidence 3466799999999887 589999998763
No 225
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=6.7e-25 Score=174.90 Aligned_cols=95 Identities=25% Similarity=0.369 Sum_probs=86.2
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeCCh-----hhcccEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERLNK-----RWKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~-----~~~~~i~ 94 (121)
++++|+++.|+++++|+++||++++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .+++.++
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 7899999999888899999999999999999999999999999999999986 79999999998752 2346799
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
||+|++.+++.+|++||+.++.
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~ 103 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGN 103 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhc
Confidence 9999999999999999998753
No 226
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=166.31 Aligned_cols=94 Identities=31% Similarity=0.320 Sum_probs=84.3
Q ss_pred EEEEeeeEEEcCC----------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---
Q psy16345 21 ELVFSGLSVTLDK----------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~----------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--- 87 (121)
+|+++||++.|+. ..+|++|||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 5999999999952 469999999999999999999999999999999999999999999999998742
Q ss_pred ----hhcccEEEEeeCC--CCCCCCCHHHHHhh
Q psy16345 88 ----RWKRKICYVLQQD--IFFPELTLRQTLEV 114 (121)
Q Consensus 88 ----~~~~~i~~v~Q~~--~l~~~ltv~e~l~~ 114 (121)
.++++++||||++ .+++.+++.+++..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~ 117 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEE 117 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHH
Confidence 3466899999998 58888999999864
No 227
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-24 Score=161.45 Aligned_cols=94 Identities=28% Similarity=0.558 Sum_probs=84.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-----ccEEEECCEeCC------hhh
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-----SGVIRLNKERLN------KRW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-----~G~i~~~g~~~~------~~~ 89 (121)
+|+++|+++.|+++.+|+++||++++|++++|+|+||||||||+++|+|+++|+ +|+|.++|+++. ..+
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 589999999998878999999999999999999999999999999999999985 799999998863 134
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++.++|++|++.+++ +|++||+.+.
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~ 111 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYG 111 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHH
Confidence 667999999998887 7999999864
No 228
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=6.8e-25 Score=168.92 Aligned_cols=89 Identities=36% Similarity=0.505 Sum_probs=80.6
Q ss_pred eeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccEEEEe
Q psy16345 26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKICYVL 97 (121)
Q Consensus 26 ~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i~~v~ 97 (121)
|++++|+++. + ++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++|++
T Consensus 4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 7899998765 4 9999999999999999999999999999999999999999999988741 2456799999
Q ss_pred eCCCCCCCCCHHHHHhhcc
Q psy16345 98 QQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~ 116 (121)
|++.+|+++|++||+.++.
T Consensus 82 q~~~l~~~~tv~enl~~~~ 100 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGM 100 (354)
T ss_pred cCCccCCCCcHHHHHHHHh
Confidence 9999999999999999864
No 229
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.1e-25 Score=160.58 Aligned_cols=95 Identities=23% Similarity=0.407 Sum_probs=84.1
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCCh------h
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLNK------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~------~ 88 (121)
+.-+++|+++.|+++++|+++||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. .
T Consensus 4 ~~~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 4 IHASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred eEEEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 34678999999988889999999999999999999999999999999999976 469999999988632 3
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+++.++|++|++.+++. |+++|+.+.
T Consensus 84 ~~~~i~~v~q~~~~~~~-tv~~ni~~~ 109 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPK-SIYDNVAYG 109 (251)
T ss_pred HhhhEEEEecCcccccC-CHHHHHHHH
Confidence 46689999999988876 999999875
No 230
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.3e-25 Score=163.24 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=83.7
Q ss_pred EEEEeeeEEEcCC------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hh
Q psy16345 21 ELVFSGLSVTLDK------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RW 89 (121)
Q Consensus 21 ~i~~~~l~~~~~~------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~ 89 (121)
+++++|++++|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 5899999999963 469999999999999999999999999999999999999999999999998742 34
Q ss_pred cccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDI--FFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~--l~~~ltv~e~l~~~~ 116 (121)
++.++|++|++. ++ ..++.+|+.++.
T Consensus 84 ~~~i~~v~q~~~~~~~-~~~v~~~l~~~~ 111 (280)
T PRK13633 84 RNKAGMVFQNPDNQIV-ATIVEEDVAFGP 111 (280)
T ss_pred hhheEEEecChhhhhc-cccHHHHHHhhH
Confidence 678999999974 44 458999998763
No 231
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.4e-25 Score=162.10 Aligned_cols=96 Identities=25% Similarity=0.481 Sum_probs=84.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC------EeCC----hhhc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK------ERLN----KRWK 90 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g------~~~~----~~~~ 90 (121)
++++++++++|+++.+|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++| .++. ..++
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~ 89 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLR 89 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence 49999999999999999999999999999999999999999999999999999987776665 4432 1346
Q ss_pred ccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 91 RKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 91 ~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+.++|++|++.+++.+|+++|+.++.
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~ 115 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPL 115 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHH
Confidence 78999999999998899999998753
No 232
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=1.3e-24 Score=161.59 Aligned_cols=94 Identities=35% Similarity=0.513 Sum_probs=83.8
Q ss_pred EEEEeeeEEEcC---------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----
Q psy16345 21 ELVFSGLSVTLD---------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~---------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---- 87 (121)
+|+++|+++.|+ ++++++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 589999999997 4789999999999999999999999999999999999999999999999988742
Q ss_pred ---hhcccEEEEeeCC--CCCCCCCHHHHHhh
Q psy16345 88 ---RWKRKICYVLQQD--IFFPELTLRQTLEV 114 (121)
Q Consensus 88 ---~~~~~i~~v~Q~~--~l~~~ltv~e~l~~ 114 (121)
.+++.++|++|++ .+++..|+.+|+.+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~ 114 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIRE 114 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHH
Confidence 2466899999997 36677899999865
No 233
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=9.6e-25 Score=155.99 Aligned_cols=91 Identities=30% Similarity=0.441 Sum_probs=81.6
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--CCCCccEEEECCEeCCh----h-hcccEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKERLNK----R-WKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~----~-~~~~i~ 94 (121)
++++|+++.|+++.+++++||++.+|++++|+|+||||||||+++|+|+ .+|++|+|.++|.++.. . .+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 4689999999888899999999999999999999999999999999999 47999999999998752 2 244699
Q ss_pred EEeeCCCCCCCCCHHHHH
Q psy16345 95 YVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l 112 (121)
|++|++.+++.+++++++
T Consensus 81 ~v~q~~~~~~~~~~~~~l 98 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL 98 (200)
T ss_pred EeecChhhccCccHHHHH
Confidence 999999999888998876
No 234
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=4.6e-25 Score=181.74 Aligned_cols=97 Identities=24% Similarity=0.489 Sum_probs=89.0
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++|++|+|+. +++|+++||++++|+.++|+|+||||||||+|+|+|+++|++|+|.++|.++. ..+++.++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 5999999999953 56999999999999999999999999999999999999999999999999986 26788999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
||+|++.+|+. |++||+.++.++
T Consensus 535 ~v~q~~~lf~~-ti~eNi~~~~~~ 557 (694)
T TIGR01846 535 VVLQENVLFSR-SIRDNIALCNPG 557 (694)
T ss_pred EEccCCeehhh-hHHHHHhcCCCC
Confidence 99999999976 999999987654
No 235
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=8.4e-25 Score=176.86 Aligned_cols=97 Identities=29% Similarity=0.563 Sum_probs=88.6
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.+++++++++|+. +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++. ..+++.++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 4899999999964 57999999999999999999999999999999999999999999999999875 25678899
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
|++|++.+|+. |++||+.++.++
T Consensus 393 ~v~q~~~lf~~-ti~~Ni~~~~~~ 415 (569)
T PRK10789 393 VVSQTPFLFSD-TVANNIALGRPD 415 (569)
T ss_pred EEccCCeeccc-cHHHHHhcCCCC
Confidence 99999999976 999999987644
No 236
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.3e-25 Score=174.43 Aligned_cols=93 Identities=27% Similarity=0.384 Sum_probs=84.4
Q ss_pred EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEEEee
Q psy16345 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICYVLQ 98 (121)
Q Consensus 24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~v~Q 98 (121)
++|++++|+++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+++.++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 3689999988889999999999999999999999999999999999999999999999998742 24567999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++.+|++||+.++.
T Consensus 81 ~~~~~~~~tv~~~l~~~~ 98 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGR 98 (491)
T ss_pred ccccccCCCHHHHhhccc
Confidence 998888999999998753
No 237
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.92 E-value=1.1e-24 Score=151.90 Aligned_cols=85 Identities=34% Similarity=0.490 Sum_probs=77.1
Q ss_pred EEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 22 LVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 22 i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
+++++++++|+ ++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+++. ++++|++|++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-------~~i~~~~q~~ 73 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------EDLLFLPQRP 73 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-------ceEEEECCCC
Confidence 46899999995 468999999999999999999999999999999999999999999999863 5799999998
Q ss_pred CCCCCCCHHHHHhh
Q psy16345 101 IFFPELTLRQTLEV 114 (121)
Q Consensus 101 ~l~~~ltv~e~l~~ 114 (121)
.++ ..|++||+.+
T Consensus 74 ~~~-~~tv~~nl~~ 86 (166)
T cd03223 74 YLP-LGTLREQLIY 86 (166)
T ss_pred ccc-cccHHHHhhc
Confidence 766 5699999976
No 238
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=1.6e-24 Score=174.37 Aligned_cols=96 Identities=29% Similarity=0.489 Sum_probs=87.7
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.++++|++++|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 5999999999953 589999999999999999999999999999999999999999999999998752 5678899
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||+|++.+|+. |++||+.++.+
T Consensus 396 ~v~q~~~lf~~-ti~~Ni~~~~~ 417 (544)
T TIGR01842 396 YLPQDVELFPG-TVAENIARFGE 417 (544)
T ss_pred EecCCcccccc-cHHHHHhccCC
Confidence 99999999986 99999986543
No 239
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=1.3e-24 Score=160.61 Aligned_cols=93 Identities=27% Similarity=0.525 Sum_probs=84.3
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.|++++++++|+. +.+++++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++.. .+++.++
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~ 98 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLS 98 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEE
Confidence 5999999999976 579999999999999999999999999999999999999999999999998752 4567899
Q ss_pred EEeeCCCCCCCCCHHHHHhh
Q psy16345 95 YVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~ 114 (121)
|++|++.+++. |+++|+..
T Consensus 99 ~v~q~~~l~~~-tv~~nl~~ 117 (257)
T cd03288 99 IILQDPILFSG-SIRFNLDP 117 (257)
T ss_pred EECCCCccccc-HHHHhcCc
Confidence 99999988875 99999864
No 240
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.4e-25 Score=157.38 Aligned_cols=96 Identities=39% Similarity=0.606 Sum_probs=86.7
Q ss_pred EEEEeeeEEEcCCcc--eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRP--ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~--~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
++.+.+++..|.+++ +|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|.++|+++... ...-|.|||
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP-gaergvVFQ 81 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP-GAERGVVFQ 81 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC-CccceeEec
Confidence 467889999998866 99999999999999999999999999999999999999999999999988631 123489999
Q ss_pred CCCCCCCCCHHHHHhhccc
Q psy16345 99 QDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~~ 117 (121)
++.++|++++.||+.|++.
T Consensus 82 ~~~LlPWl~~~dNvafgL~ 100 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQ 100 (259)
T ss_pred cCccchhhHHHHHHHHHHH
Confidence 9999999999999999874
No 241
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=2.1e-26 Score=160.81 Aligned_cols=94 Identities=29% Similarity=0.541 Sum_probs=86.5
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEEe
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYVL 97 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v~ 97 (121)
++++++.+.-++..+|+++||.+.+||+++|+||||||||||+|+++-|+.|++|.++|.|++++ ..+|++++|+.
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence 56677777677889999999999999999999999999999999999999999999999999987 36888999999
Q ss_pred eCCCCCCCCCHHHHHhhcc
Q psy16345 98 QQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~ 116 (121)
|.|.||++ ||++|+.|..
T Consensus 84 Q~paLfg~-tVeDNlifP~ 101 (223)
T COG4619 84 QTPALFGD-TVEDNLIFPW 101 (223)
T ss_pred cCcccccc-chhhccccch
Confidence 99999998 9999999864
No 242
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=1.3e-24 Score=175.49 Aligned_cols=89 Identities=34% Similarity=0.433 Sum_probs=82.5
Q ss_pred cEEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 20 LELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 20 ~~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
.+|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++ ...++||+|
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-------~~~i~~v~Q 77 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-------GIKVGYLPQ 77 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-------CCEEEEEec
Confidence 4699999999998 78899999999999999999999999999999999999999999999874 246999999
Q ss_pred CCCCCCCCCHHHHHhhc
Q psy16345 99 QDIFFPELTLRQTLEVS 115 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~ 115 (121)
++.+++.+|+.||+.++
T Consensus 78 ~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 78 EPQLDPEKTVRENVEEG 94 (556)
T ss_pred CCCCCCCCcHHHHHHHh
Confidence 99999999999999865
No 243
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.92 E-value=9.4e-25 Score=177.16 Aligned_cols=97 Identities=26% Similarity=0.420 Sum_probs=88.7
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~ 95 (121)
.++++|++++|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++. ..+++.++|
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5999999999975 67999999999999999999999999999999999999999999999999875 257788999
Q ss_pred EeeCCCCCCCCCHHHHHhhcccC
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
|+|++.+|+. |++||+.++.++
T Consensus 414 v~q~~~lf~~-ti~~Ni~~~~~~ 435 (585)
T TIGR01192 414 VFQDAGLFNR-SIRENIRLGREG 435 (585)
T ss_pred EccCCccCcc-cHHHHHhcCCCC
Confidence 9999999875 999999997643
No 244
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.92 E-value=2.3e-24 Score=158.92 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=81.8
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC----CccEEEECCEeCCh--hhcccE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL----DSGVIRLNKERLNK--RWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~----~~G~i~~~g~~~~~--~~~~~i 93 (121)
.+++++|++++| ++++|+++||++.+|++++|+|+||||||||+++|+|+++| ++|+|.++|+++.. ..++.+
T Consensus 3 ~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 3 QQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred cEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 368999999999 67899999999999999999999999999999999999998 99999999998752 224579
Q ss_pred EEEeeCCC--CCCCCCHHHHHhh
Q psy16345 94 CYVLQQDI--FFPELTLRQTLEV 114 (121)
Q Consensus 94 ~~v~Q~~~--l~~~ltv~e~l~~ 114 (121)
+|++|++. +.+.+|+.+++.+
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~ 104 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARE 104 (254)
T ss_pred EEEecCCccccCccccHHHHHHH
Confidence 99999974 4456788888754
No 245
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=3.9e-25 Score=156.05 Aligned_cols=94 Identities=30% Similarity=0.493 Sum_probs=84.9
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
+.++++++.|+..+ -.++++|+.||++||+|||||||||||++|+|++.|.+|+|+++|++... ...|-++++||+
T Consensus 2 l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 2 LALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred ccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 56789999997644 46788999999999999999999999999999999999999999999863 457789999999
Q ss_pred CCCCCCCCHHHHHhhccc
Q psy16345 100 DIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~~ 117 (121)
.++|.++||.+|+.+|..
T Consensus 80 nNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred cccchhhhhhhhhcccCC
Confidence 999999999999999874
No 246
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.6e-24 Score=164.39 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=85.4
Q ss_pred cEEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-----CCccEEEECCEeCC------
Q psy16345 20 LELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-----LDSGVIRLNKERLN------ 86 (121)
Q Consensus 20 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~------ 86 (121)
..|+++|++++|. .+++|+++||+|++|+++||+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 3699999999995 3579999999999999999999999999999999999986 57999999999985
Q ss_pred hhhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 87 KRWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 87 ~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
..+++.++|+||++.+++ .|++||+.|+.
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~ 187 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGP 187 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHH
Confidence 245778999999999886 69999999764
No 247
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=2.1e-24 Score=158.75 Aligned_cols=94 Identities=32% Similarity=0.425 Sum_probs=81.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe-----CCh----h---
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER-----LNK----R--- 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-----~~~----~--- 88 (121)
+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ +.. .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 5899999999988889999999999999999999999999999999999999999999999876 421 1
Q ss_pred -hcccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345 89 -WKRKICYVLQQDI--FFPELTLRQTLEV 114 (121)
Q Consensus 89 -~~~~i~~v~Q~~~--l~~~ltv~e~l~~ 114 (121)
+++.++|++|++. +++.+++.+|+.+
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~ 111 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGE 111 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHH
Confidence 2356999999974 4556788888754
No 248
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.8e-24 Score=164.16 Aligned_cols=94 Identities=19% Similarity=0.317 Sum_probs=82.1
Q ss_pred EEEEeeeEEEc----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC----CCccEEEECCEeCCh----h
Q psy16345 21 ELVFSGLSVTL----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK----LDSGVIRLNKERLNK----R 88 (121)
Q Consensus 21 ~i~~~~l~~~~----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~----~~~G~i~~~g~~~~~----~ 88 (121)
+|+++|+++.| +...+++++||+|.+||++||+|+||||||||+++|+|+++ +++|+|.++|+++.. .
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999 34679999999999999999999999999999999999986 588999999998742 1
Q ss_pred ----hcccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345 89 ----WKRKICYVLQQDI--FFPELTLRQTLEV 114 (121)
Q Consensus 89 ----~~~~i~~v~Q~~~--l~~~ltv~e~l~~ 114 (121)
+++.++||||++. +++.+|+.+++.+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~ 114 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ 114 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence 2357999999986 6788899999875
No 249
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.7e-24 Score=155.72 Aligned_cols=88 Identities=35% Similarity=0.541 Sum_probs=79.3
Q ss_pred eeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccEEEEe
Q psy16345 26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKICYVL 97 (121)
Q Consensus 26 ~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i~~v~ 97 (121)
+|+++|+++.+ ++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 81 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEe
Confidence 89999998765 99999999 9999999999999999999999999999999999987631 2456799999
Q ss_pred eCCCCCCCCCHHHHHhhcc
Q psy16345 98 QQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~ 116 (121)
|++.+++.+|+++|+.+..
T Consensus 82 q~~~~~~~~t~~~~l~~~~ 100 (214)
T cd03297 82 QQYALFPHLNVRENLAFGL 100 (214)
T ss_pred cCCccCCCCCHHHHHHHHH
Confidence 9999998899999998654
No 250
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=1.3e-24 Score=162.53 Aligned_cols=92 Identities=23% Similarity=0.520 Sum_probs=83.1
Q ss_pred EEEEeeeEEEc--CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~--~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++|++++| +...+|+++||+|++||+++|+|+||||||||+++|+|+++ .+|+|+++|.++. ..+++.++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 37899999999 45679999999999999999999999999999999999997 7899999999875 25677899
Q ss_pred EEeeCCCCCCCCCHHHHHhh
Q psy16345 95 YVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~ 114 (121)
|++|++.+|+. |+++|+..
T Consensus 81 ~v~q~~~lf~~-tv~~nl~~ 99 (275)
T cd03289 81 VIPQKVFIFSG-TFRKNLDP 99 (275)
T ss_pred EECCCcccchh-hHHHHhhh
Confidence 99999999975 99999963
No 251
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.5e-25 Score=158.73 Aligned_cols=97 Identities=33% Similarity=0.506 Sum_probs=88.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v 96 (121)
+|+.+|++++..++.+++++||++++||+.+|+||||||||||||.|+|.+.|++|++.++|.+++ .++.++.+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 488999999999999999999999999999999999999999999999999999999999999886 2567788999
Q ss_pred eeCCCCCCCCCHHHHHhhccc
Q psy16345 97 LQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
+|+..+-+..||+|.+.+|.-
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~ 101 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRI 101 (259)
T ss_pred ccCcccccceEHHHHHHhccc
Confidence 999887556699999999873
No 252
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=6.4e-25 Score=191.98 Aligned_cols=98 Identities=21% Similarity=0.342 Sum_probs=89.6
Q ss_pred EEEEeeeEEEcC---CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC------------------------
Q psy16345 21 ELVFSGLSVTLD---KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL------------------------ 73 (121)
Q Consensus 21 ~i~~~~l~~~~~---~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~------------------------ 73 (121)
.|+++||+|+|. ++++|+++||+|++|+++||+||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 599999999995 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CccEEEECCEeCC----hhhcccEEEEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345 74 ------------------------------DSGVIRLNKERLN----KRWKRKICYVLQQDIFFPELTLRQTLEVSIADE 119 (121)
Q Consensus 74 ------------------------------~~G~i~~~g~~~~----~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~ 119 (121)
++|+|.++|.++. +.+|++++||+|++.||+. |++||+.++.+++
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~~a 1323 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKEDA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCCCC
Confidence 5999999999986 3688999999999999975 9999999997543
No 253
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=3.4e-24 Score=157.43 Aligned_cols=95 Identities=28% Similarity=0.436 Sum_probs=84.5
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--CCCCccEEEECCEeCCh----hhcc-cE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKERLNK----RWKR-KI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~----~~~~-~i 93 (121)
+++++++++.|+++.+|+++||++++|+++||+|+||||||||+++|+|+ ++|++|+|.++|.++.. .+++ .+
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 59999999999888899999999999999999999999999999999998 57899999999988752 2222 48
Q ss_pred EEEeeCCCCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++|++.+++.+++.+++.+.
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~ 108 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLA 108 (252)
T ss_pred EEEeccccccccccHHHHHHHh
Confidence 8999999999989999998764
No 254
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.92 E-value=4.6e-24 Score=163.08 Aligned_cols=96 Identities=22% Similarity=0.334 Sum_probs=83.8
Q ss_pred cEEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCCh----h
Q psy16345 20 LELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNK----R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~----~ 88 (121)
..++++|+++.|+ ...+++++||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|+++.. .
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 4699999999994 257999999999999999999999999999999999999986 9999999998742 1
Q ss_pred ---h-cccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345 89 ---W-KRKICYVLQQD--IFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ---~-~~~i~~v~Q~~--~l~~~ltv~e~l~~~ 115 (121)
+ ++.++||||++ .+++.+|+.+++...
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 2 24799999998 588889999988643
No 255
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=160.08 Aligned_cols=94 Identities=28% Similarity=0.392 Sum_probs=81.0
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhh-cccEEEEee
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW-KRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~i~~v~Q 98 (121)
+++++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ++.++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 599999999995 578999999999999999999999999999999999999999999999999875433 346999999
Q ss_pred CCCCC--CCCCHHHHHhh
Q psy16345 99 QDIFF--PELTLRQTLEV 114 (121)
Q Consensus 99 ~~~l~--~~ltv~e~l~~ 114 (121)
++.+. ...++++++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~ 103 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMM 103 (272)
T ss_pred ccccccCCCcchhhheec
Confidence 97642 23467888764
No 256
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=2.4e-24 Score=155.36 Aligned_cols=93 Identities=17% Similarity=0.352 Sum_probs=81.4
Q ss_pred EEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccE
Q psy16345 23 VFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKI 93 (121)
Q Consensus 23 ~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i 93 (121)
.+.++.+.|+ +.++++++||+|++|++++|+|+|||||||||++|+|+++|++|+|.++|.++.. ..++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 4678999996 4679999999999999999999999999999999999999999999999987531 234679
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++|++.++ ..|++||+.+..
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~ 103 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGS 103 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcC
Confidence 9999999887 469999998754
No 257
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.4e-24 Score=162.95 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=81.7
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC----CCccEEEECCEeCCh----h
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK----LDSGVIRLNKERLNK----R 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~----~~~G~i~~~g~~~~~----~ 88 (121)
+|+++|+++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ +++|+|.++|+++.. .
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975 469999999999999999999999999999999999987 489999999998742 1
Q ss_pred ----hcccEEEEeeCC--CCCCCCCHHHHHhh
Q psy16345 89 ----WKRKICYVLQQD--IFFPELTLRQTLEV 114 (121)
Q Consensus 89 ----~~~~i~~v~Q~~--~l~~~ltv~e~l~~ 114 (121)
+++.++||||++ .++|.+++.+++..
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 234699999998 47888999887754
No 258
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=2e-24 Score=152.85 Aligned_cols=84 Identities=27% Similarity=0.463 Sum_probs=73.6
Q ss_pred cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEEEEeeCCC--C
Q psy16345 31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKICYVLQQDI--F 102 (121)
Q Consensus 31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~~v~Q~~~--l 102 (121)
|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++.++|++|++. +
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 35678999999999999999999999999999999999999999999999998873 134567999999973 4
Q ss_pred CCCCCHHHHHhhc
Q psy16345 103 FPELTLRQTLEVS 115 (121)
Q Consensus 103 ~~~ltv~e~l~~~ 115 (121)
+ ..|++||+.+.
T Consensus 82 ~-~~tv~~nl~~~ 93 (190)
T TIGR01166 82 F-AADVDQDVAFG 93 (190)
T ss_pred c-cccHHHHHHHH
Confidence 4 46999999875
No 259
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=2.6e-24 Score=173.54 Aligned_cols=88 Identities=33% Similarity=0.426 Sum_probs=81.9
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
+++++|++++|+ ++++|+++||+|++|++++|+|+||||||||||+|+|+++|++|+|.+++ ...++||+|+
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-------~~~i~~v~Q~ 76 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-------GIKVGYLPQE 76 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-------CCEEEEEecc
Confidence 699999999997 77899999999999999999999999999999999999999999999874 2469999999
Q ss_pred CCCCCCCCHHHHHhhc
Q psy16345 100 DIFFPELTLRQTLEVS 115 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~ 115 (121)
+.+++++|++||+.++
T Consensus 77 ~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 77 PQLDPTKTVRENVEEG 92 (552)
T ss_pred CCCCCCCcHHHHHHHh
Confidence 9998899999999875
No 260
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=172.37 Aligned_cols=88 Identities=22% Similarity=0.488 Sum_probs=81.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
+|+++|++++|+++++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~~ 73 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-------ERLGKLRQDQ 73 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------CEEEEEeccC
Confidence 378999999999889999999999999999999999999999999999999999999999862 3699999999
Q ss_pred CCCCCCCHHHHHhhc
Q psy16345 101 IFFPELTLRQTLEVS 115 (121)
Q Consensus 101 ~l~~~ltv~e~l~~~ 115 (121)
.+++.+|++||+.++
T Consensus 74 ~~~~~~tv~e~l~~~ 88 (530)
T PRK15064 74 FAFEEFTVLDTVIMG 88 (530)
T ss_pred CcCCCCcHHHHHHHh
Confidence 888899999999864
No 261
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.91 E-value=5.9e-24 Score=156.94 Aligned_cols=87 Identities=38% Similarity=0.599 Sum_probs=78.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++ +..++|++|++
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-------~~~i~~v~q~~ 76 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-------KLRIGYVPQKL 76 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-------ccCEEEecccc
Confidence 58999999999888899999999999999999999999999999999999999999999986 24699999998
Q ss_pred CCCCC--CCHHHHHhh
Q psy16345 101 IFFPE--LTLRQTLEV 114 (121)
Q Consensus 101 ~l~~~--ltv~e~l~~ 114 (121)
.+++. .++.+++.+
T Consensus 77 ~~~~~l~~~~~~~~~~ 92 (251)
T PRK09544 77 YLDTTLPLTVNRFLRL 92 (251)
T ss_pred ccccccChhHHHHHhc
Confidence 77765 378887654
No 262
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.91 E-value=3.1e-24 Score=156.80 Aligned_cols=87 Identities=28% Similarity=0.425 Sum_probs=76.4
Q ss_pred EEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEe-eCCCCCC
Q psy16345 29 VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVL-QQDIFFP 104 (121)
Q Consensus 29 ~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~-Q~~~l~~ 104 (121)
+.|+.+++|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.+.. ..+++.++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 5667788999999999999999999999999999999999999999999999998753 23456899998 5567888
Q ss_pred CCCHHHHHhhc
Q psy16345 105 ELTLRQTLEVS 115 (121)
Q Consensus 105 ~ltv~e~l~~~ 115 (121)
.+|++||+.+.
T Consensus 109 ~~tv~e~l~~~ 119 (236)
T cd03267 109 DLPVIDSFYLL 119 (236)
T ss_pred CCcHHHHHHHH
Confidence 89999998764
No 263
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6e-24 Score=173.65 Aligned_cols=96 Identities=26% Similarity=0.343 Sum_probs=85.4
Q ss_pred cEEEEeeeEEEcCC-----------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-
Q psy16345 20 LELVFSGLSVTLDK-----------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK- 87 (121)
Q Consensus 20 ~~i~~~~l~~~~~~-----------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~- 87 (121)
.+++++|+++.|+. ..+|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|.++..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 36999999999951 469999999999999999999999999999999999999999999999998742
Q ss_pred ------hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345 88 ------RWKRKICYVLQQD--IFFPELTLRQTLEVS 115 (121)
Q Consensus 88 ------~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~ 115 (121)
.+++.++||+|++ .+++.+|+.+|+.+.
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~ 427 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEP 427 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHH
Confidence 2456899999997 588889999999864
No 264
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.91 E-value=1.9e-24 Score=167.98 Aligned_cols=91 Identities=21% Similarity=0.341 Sum_probs=79.5
Q ss_pred eeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE----eCC----h---hh-cccE
Q psy16345 26 GLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE----RLN----K---RW-KRKI 93 (121)
Q Consensus 26 ~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~----~~~----~---~~-~~~i 93 (121)
++.++|+...+|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+ ++. . .. ++++
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 4556677778999999999999999999999999999999999999999999999996 332 1 12 3579
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+||||++.+++++|++||+.++.
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~ 131 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGL 131 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHH
Confidence 99999999999999999999864
No 265
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.8e-25 Score=158.47 Aligned_cols=97 Identities=27% Similarity=0.433 Sum_probs=91.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v 96 (121)
||+++|++++|+.+.+++++|++|++|.+++|||||||||||||.++++|++.++|+|+++|.++. +.+.++++.+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999985 4678889999
Q ss_pred eeCCCCCCCCCHHHHHhhccc
Q psy16345 97 LQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
-|+..+...+||+|-+.||.-
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred HhhchhhheeEHHHHhhcCCC
Confidence 999999999999999999874
No 266
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.9e-24 Score=172.97 Aligned_cols=96 Identities=22% Similarity=0.353 Sum_probs=83.3
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC-----------
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL----------- 85 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~----------- 85 (121)
+|+++|+++.|+. .++|+++||++++|+++||+|+||||||||+|+|+|+++|++|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 6999999999962 4799999999999999999999999999999999999999999999988643
Q ss_pred --Ch----hh-cccEEEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345 86 --NK----RW-KRKICYVLQQD--IFFPELTLRQTLEVSI 116 (121)
Q Consensus 86 --~~----~~-~~~i~~v~Q~~--~l~~~ltv~e~l~~~~ 116 (121)
.. .+ ++.++||+|++ .+++.+||+||+.++.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~ 131 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 131 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHH
Confidence 11 12 24799999998 6788899999998754
No 267
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.91 E-value=6.1e-24 Score=155.61 Aligned_cols=92 Identities=30% Similarity=0.502 Sum_probs=79.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCCh----h-hcccE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLNK----R-WKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~----~-~~~~i 93 (121)
+++++|+++.|+++++++++||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.++.. . .++.+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 378999999998888999999999999999999999999999999999995 6999999999987642 2 23569
Q ss_pred EEEeeCCCCCCCCCHHHHH
Q psy16345 94 CYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l 112 (121)
+|++|++.+++.++..+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~ 99 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFL 99 (248)
T ss_pred EEEecCchhccchhHHHHH
Confidence 9999998888776665554
No 268
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=2.6e-24 Score=150.77 Aligned_cols=96 Identities=39% Similarity=0.522 Sum_probs=86.9
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------h
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------R 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~ 88 (121)
.|+++++++..+. -.+|++|+|.+++||.+||||||||||||||-+++|+..|++|+|++.|+++.+ -
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 4888999888754 469999999999999999999999999999999999999999999999999852 2
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+.+++|||||.+.+.|+||..||+...+
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPl 113 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPL 113 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchh
Confidence 4568999999999999999999998765
No 269
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=3.4e-24 Score=188.82 Aligned_cols=95 Identities=23% Similarity=0.427 Sum_probs=88.3
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++. +.+|++++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 5999999999964 47999999999999999999999999999999999999999999999999986 36889999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|+|++.+|.. |++||+..+.
T Consensus 1317 iVpQdp~LF~G-TIreNLd~~~ 1337 (1622)
T PLN03130 1317 IIPQAPVLFSG-TVRFNLDPFN 1337 (1622)
T ss_pred EECCCCccccc-cHHHHhCcCC
Confidence 99999999987 9999998764
No 270
>PLN03211 ABC transporter G-25; Provisional
Probab=99.91 E-value=4.2e-24 Score=175.52 Aligned_cols=89 Identities=44% Similarity=0.765 Sum_probs=79.6
Q ss_pred EEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC--ccEEEECCEeCChhhcccEEEEeeCCCCCCC
Q psy16345 28 SVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD--SGVIRLNKERLNKRWKRKICYVLQQDIFFPE 105 (121)
Q Consensus 28 ~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~--~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ 105 (121)
+++|+++.+|+++|+++++||++||+|||||||||||++|+|+.+|. +|+|.++|+++....+++++||+|++.+++.
T Consensus 75 ~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPH 154 (659)
T ss_pred cccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCc
Confidence 34455678999999999999999999999999999999999999885 8999999998866556779999999999999
Q ss_pred CCHHHHHhhcc
Q psy16345 106 LTLRQTLEVSI 116 (121)
Q Consensus 106 ltv~e~l~~~~ 116 (121)
+||+||+.+..
T Consensus 155 lTV~E~l~~~a 165 (659)
T PLN03211 155 LTVRETLVFCS 165 (659)
T ss_pred CCHHHHHHHHH
Confidence 99999998753
No 271
>PLN03232 ABC transporter C family member; Provisional
Probab=99.91 E-value=3.1e-24 Score=188.23 Aligned_cols=95 Identities=25% Similarity=0.460 Sum_probs=88.2
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++. +.+|++++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 5999999999953 57999999999999999999999999999999999999999999999999986 36889999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
||+|++.+|+. |++||+..+.
T Consensus 1314 iVpQdp~LF~g-TIr~NL~~~~ 1334 (1495)
T PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFS 1334 (1495)
T ss_pred EECCCCeeeCc-cHHHHcCCCC
Confidence 99999999987 9999998754
No 272
>KOG0055|consensus
Probab=99.90 E-value=2.5e-24 Score=182.70 Aligned_cols=99 Identities=31% Similarity=0.503 Sum_probs=91.4
Q ss_pred EEEEeeeEEEcCCc---ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLDKR---PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~~---~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.++++||+|+|..+ .+|+++||.|++|+.+||||+|||||||++++|.+++.|++|+|.++|.++. +.+|.+|
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~i 429 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQI 429 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhc
Confidence 59999999999765 5899999999999999999999999999999999999999999999999986 3678899
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIADED 120 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~ 120 (121)
|.|.|+|.||.. |++||+.++.++++
T Consensus 430 glV~QePvlF~~-tI~eNI~~G~~dat 455 (1228)
T KOG0055|consen 430 GLVSQEPVLFAT-TIRENIRYGKPDAT 455 (1228)
T ss_pred Ceeeechhhhcc-cHHHHHhcCCCccc
Confidence 999999988864 99999999997654
No 273
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=9.9e-24 Score=168.96 Aligned_cols=96 Identities=28% Similarity=0.365 Sum_probs=83.0
Q ss_pred cEEEEeeeEEEcC-----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC-CEe---CC----
Q psy16345 20 LELVFSGLSVTLD-----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN-KER---LN---- 86 (121)
Q Consensus 20 ~~i~~~~l~~~~~-----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~-g~~---~~---- 86 (121)
.+++++|++++|+ .+++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++ |.+ +.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 3699999999994 2579999999999999999999999999999999999999999999995 532 21
Q ss_pred ---hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 87 ---KRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 87 ---~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
..++++++|++|++.+++.+|++||+.+.
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~ 389 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEA 389 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHH
Confidence 12355799999999899999999999864
No 274
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-24 Score=171.33 Aligned_cols=100 Identities=31% Similarity=0.455 Sum_probs=91.9
Q ss_pred EEEEeeeEEEcCCc--ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDKR--PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~--~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.++++|++|+|.++ ++|+|+||++++||.+||+|+||||||||+.+|+|.++|++|+|.++|.++. +.+++.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 59999999999764 5999999999999999999999999999999999999999999999999885 24788999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccCcCC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIADEDE 121 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~ 121 (121)
++.|.+++|.. |+++|+.++.+++++
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~~~AsD 441 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLANPDASD 441 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcCCCCCH
Confidence 99999999977 999999999987653
No 275
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=6.3e-24 Score=169.31 Aligned_cols=96 Identities=25% Similarity=0.305 Sum_probs=84.8
Q ss_pred cEEEEeeeEEEc---CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCCh-----hhc
Q psy16345 20 LELVFSGLSVTL---DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLNK-----RWK 90 (121)
Q Consensus 20 ~~i~~~~l~~~~---~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~-----~~~ 90 (121)
.+++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 369999999998 346799999999999999999999999999999999999985 89999999988741 346
Q ss_pred ccEEEEeeCC---CCCCCCCHHHHHhhc
Q psy16345 91 RKICYVLQQD---IFFPELTLRQTLEVS 115 (121)
Q Consensus 91 ~~i~~v~Q~~---~l~~~ltv~e~l~~~ 115 (121)
++++|++|++ .+++.+|+++|+.++
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~ 363 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLS 363 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcch
Confidence 6899999996 488889999999874
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.4e-24 Score=169.34 Aligned_cols=94 Identities=30% Similarity=0.508 Sum_probs=83.2
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~ 94 (121)
.+++++|+++.|+ .+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.+ ..++.++
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 3699999998764 48999999999999999999999999999999999999999999999988742 2356799
Q ss_pred EEeeC---CCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQ---DIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~---~~l~~~ltv~e~l~~~ 115 (121)
|++|+ ..+++.+|++||+.++
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccc
Confidence 99998 4588889999999864
No 277
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=7.6e-24 Score=146.01 Aligned_cols=97 Identities=33% Similarity=0.608 Sum_probs=89.5
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCCh--hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNK--RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~--~~~~~i~~ 95 (121)
++.++|++.+.+++.+|.++||+|.+||++.|+||||||||||+..+.|.+.+. +|++++++++++. ..+|++|+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 477899999999999999999999999999999999999999999999988753 7999999999873 56789999
Q ss_pred EeeCCCCCCCCCHHHHHhhccc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
+|||+-+||+++|.+|+.|+++
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp 103 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALP 103 (213)
T ss_pred eecccccccccccccceEEecC
Confidence 9999999999999999999875
No 278
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.9e-24 Score=168.83 Aligned_cols=96 Identities=22% Similarity=0.317 Sum_probs=84.0
Q ss_pred cEEEEeeeEEEcC---CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEECCEeCCh-----hhc
Q psy16345 20 LELVFSGLSVTLD---KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLNKERLNK-----RWK 90 (121)
Q Consensus 20 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~-----~~~ 90 (121)
.+++++|+++.|+ ++.+++++||+|++|++++|+|+||||||||+|+|+|+++ |++|+|.++|+++.. .++
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 3599999999993 4579999999999999999999999999999999999998 599999999988741 235
Q ss_pred ccEEEEeeCC---CCCCCCCHHHHHhhc
Q psy16345 91 RKICYVLQQD---IFFPELTLRQTLEVS 115 (121)
Q Consensus 91 ~~i~~v~Q~~---~l~~~ltv~e~l~~~ 115 (121)
+.++|++|++ .+++.+|+.||+.++
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLA 365 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence 6799999995 477889999999864
No 279
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=2.6e-23 Score=144.54 Aligned_cols=77 Identities=32% Similarity=0.468 Sum_probs=70.7
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEEE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~v 96 (121)
++++|+++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++.++|+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 80 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEE
Confidence 468999999988899999999999999999999999999999999999999999999999988752 245679999
Q ss_pred ee
Q psy16345 97 LQ 98 (121)
Q Consensus 97 ~Q 98 (121)
+|
T Consensus 81 ~q 82 (163)
T cd03216 81 YQ 82 (163)
T ss_pred Ee
Confidence 98
No 280
>PTZ00243 ABC transporter; Provisional
Probab=99.90 E-value=1.2e-23 Score=185.01 Aligned_cols=94 Identities=29% Similarity=0.510 Sum_probs=87.3
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++||+++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++. +.+|++++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 5999999999964 45999999999999999999999999999999999999999999999999986 36889999
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
||||++.+|.. |+++||...
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~ 1407 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPF 1407 (1560)
T ss_pred EECCCCccccc-cHHHHhCcc
Confidence 99999999977 999999763
No 281
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=6.6e-24 Score=186.36 Aligned_cols=92 Identities=21% Similarity=0.373 Sum_probs=86.7
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++. +.+|++++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 5999999999964 47999999999999999999999999999999999999999999999999986 36889999
Q ss_pred EEeeCCCCCCCCCHHHHHh
Q psy16345 95 YVLQQDIFFPELTLRQTLE 113 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~ 113 (121)
+|+|++.+|.. |+++|+.
T Consensus 1364 iVpQdp~LF~g-TIr~NLd 1381 (1522)
T TIGR00957 1364 IIPQDPVLFSG-SLRMNLD 1381 (1522)
T ss_pred EECCCCcccCc-cHHHHcC
Confidence 99999999987 9999997
No 282
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=1.7e-23 Score=167.64 Aligned_cols=95 Identities=26% Similarity=0.470 Sum_probs=81.2
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEEC------------------
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLN------------------ 81 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~------------------ 81 (121)
|+++|++++|+++++|+++||++.+|++++|+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 46899999998888999999999999999999999999999999999997 6999999996
Q ss_pred -----CEeC----------C----hhhcccEEEEeeC-CCCCCCCCHHHHHhhcc
Q psy16345 82 -----KERL----------N----KRWKRKICYVLQQ-DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 82 -----g~~~----------~----~~~~~~i~~v~Q~-~~l~~~ltv~e~l~~~~ 116 (121)
|.++ . ..+++.++|++|+ +.+++.+|++||+.++.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~ 135 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEAL 135 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHH
Confidence 2221 0 1235679999997 67888899999998753
No 283
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.90 E-value=1e-23 Score=169.87 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=82.6
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.++++|++|+|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++++|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 5999999999965 569999999999999999999999999999999999999999999999999862 57889999
Q ss_pred EeeCCCCCCCCCHHHH
Q psy16345 96 VLQQDIFFPELTLRQT 111 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~ 111 (121)
|+|++.+|+. |+++|
T Consensus 402 v~q~~~lf~~-ti~~n 416 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPE 416 (547)
T ss_pred EecChhHHHH-hhccc
Confidence 9999988876 77776
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=1.8e-23 Score=167.86 Aligned_cols=95 Identities=27% Similarity=0.396 Sum_probs=83.3
Q ss_pred cEEEEeeeEEEcC-----------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-
Q psy16345 20 LELVFSGLSVTLD-----------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK- 87 (121)
Q Consensus 20 ~~i~~~~l~~~~~-----------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~- 87 (121)
.+++++|+++.|+ ++.+|+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 3599999999995 3579999999999999999999999999999999999985 89999999988742
Q ss_pred ------hhcccEEEEeeCC--CCCCCCCHHHHHhhc
Q psy16345 88 ------RWKRKICYVLQQD--IFFPELTLRQTLEVS 115 (121)
Q Consensus 88 ------~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~ 115 (121)
.+++.++|++|++ .+++.+|++||+.++
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~ 388 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG 388 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH
Confidence 1356799999997 478889999999875
No 285
>KOG0056|consensus
Probab=99.90 E-value=5.8e-24 Score=167.93 Aligned_cols=99 Identities=27% Similarity=0.534 Sum_probs=92.4
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.|+++|++|.|. ++++|+||||++.+|+.+||+||||+||||+||+|.++.+..+|.|.++|++++. .+|++||.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 599999999995 5899999999999999999999999999999999999999999999999999963 68999999
Q ss_pred EeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIADED 120 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~~~ 120 (121)
||||..+|.+ |+..|+.++.+.++
T Consensus 617 VPQDtvLFNd-TI~yNIryak~~As 640 (790)
T KOG0056|consen 617 VPQDTVLFND-TILYNIRYAKPSAS 640 (790)
T ss_pred ccCcceeecc-eeeeheeecCCCCC
Confidence 9999999987 99999999887654
No 286
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=9.7e-23 Score=152.94 Aligned_cols=86 Identities=29% Similarity=0.553 Sum_probs=78.1
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
...|+++++++. .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 37 ~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---------~i~yv~q 105 (282)
T cd03291 37 DNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---------RISFSSQ 105 (282)
T ss_pred CCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------EEEEEeC
Confidence 346999999985 46799999999999999999999999999999999999999999999987 4899999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++. |++||+.++.
T Consensus 106 ~~~l~~~-tv~enl~~~~ 122 (282)
T cd03291 106 FSWIMPG-TIKENIIFGV 122 (282)
T ss_pred ccccccc-CHHHHhhccc
Confidence 9988875 9999998753
No 287
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=5.4e-23 Score=183.01 Aligned_cols=96 Identities=25% Similarity=0.326 Sum_probs=88.1
Q ss_pred cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEE
Q psy16345 20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~ 94 (121)
.+++++|+++.|++ +.+|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|+++.+ ..++.+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 35999999999985 579999999999999999999999999999999999999999999999998852 4567899
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++|++.+++.+|++|++.+.
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~ 2036 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLY 2036 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHH
Confidence 999999999999999999864
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=5.5e-23 Score=165.02 Aligned_cols=94 Identities=32% Similarity=0.419 Sum_probs=81.7
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCCh----
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLNK---- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~~---- 87 (121)
+++++|+++.|++ +++|+++||+|.+||++||+||||||||||+|+|+|+++| ++|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5999999999963 5799999999999999999999999999999999999986 79999999998742
Q ss_pred ---hh-cccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345 88 ---RW-KRKICYVLQQDI--FFPELTLRQTLEV 114 (121)
Q Consensus 88 ---~~-~~~i~~v~Q~~~--l~~~ltv~e~l~~ 114 (121)
.+ ++.++|++|++. +++.+++.+++.+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~ 117 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence 12 257999999975 6677899999874
No 289
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=5.4e-23 Score=166.10 Aligned_cols=90 Identities=28% Similarity=0.519 Sum_probs=81.8
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+++++|+++.|+++.+|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++ + ..++|++|+
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~------~~i~~v~q~ 395 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T------VKLAYVDQS 395 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c------eEEEEEeCc
Confidence 469999999999888999999999999999999999999999999999999999999999853 2 259999999
Q ss_pred C-CCCCCCCHHHHHhhcc
Q psy16345 100 D-IFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~-~l~~~ltv~e~l~~~~ 116 (121)
+ .+++.+|++||+.+..
T Consensus 396 ~~~~~~~~tv~e~l~~~~ 413 (556)
T PRK11819 396 RDALDPNKTVWEEISGGL 413 (556)
T ss_pred hhhcCCCCCHHHHHHhhc
Confidence 6 6788899999998753
No 290
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=9.5e-23 Score=181.46 Aligned_cols=97 Identities=21% Similarity=0.346 Sum_probs=88.9
Q ss_pred cEEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEE
Q psy16345 20 LELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~ 94 (121)
..|+++|+++.|+ ++.+++++||++.+||+++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ..++.++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 3699999999995 5789999999999999999999999999999999999999999999999998852 4567899
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|++|++.+++.+||+||+.+..
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~ 1028 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYA 1028 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHH
Confidence 9999999999999999998753
No 291
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.89 E-value=3.3e-23 Score=152.43 Aligned_cols=89 Identities=30% Similarity=0.433 Sum_probs=77.3
Q ss_pred EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEee
Q psy16345 23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQ 98 (121)
Q Consensus 23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q 98 (121)
+++||++. .+|+++||++++|++++|+|+||||||||+++|+|++++ +|+|.++|+++.. .+++.++|++|
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecc
Confidence 46777775 389999999999999999999999999999999999865 8999999998742 34567999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++.+|+++|+.+..
T Consensus 77 ~~~~~~~~tv~~nl~~~~ 94 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQ 94 (248)
T ss_pred cCccCCCccHHHHHHhcC
Confidence 988888889999998763
No 292
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=7.8e-23 Score=165.01 Aligned_cols=90 Identities=28% Similarity=0.498 Sum_probs=81.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+++++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ . ..++|++|+
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~------~~i~~v~q~ 393 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T------VKLAYVDQS 393 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c------eEEEEEeCC
Confidence 369999999999888999999999999999999999999999999999999999999999854 2 269999999
Q ss_pred C-CCCCCCCHHHHHhhcc
Q psy16345 100 D-IFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~-~l~~~ltv~e~l~~~~ 116 (121)
+ .+++.+|++||+.++.
T Consensus 394 ~~~~~~~~tv~e~l~~~~ 411 (552)
T TIGR03719 394 RDALDPNKTVWEEISGGL 411 (552)
T ss_pred ccccCCCCcHHHHHHhhc
Confidence 6 4788899999998764
No 293
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.4e-24 Score=152.26 Aligned_cols=95 Identities=26% Similarity=0.464 Sum_probs=88.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------------
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------------- 86 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-------------- 86 (121)
.++++|+.++||...+|+.||++..+|+++.|||.|||||||+||||.-|..|+.|.|.++|+++.
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 588999999999999999999999999999999999999999999999999999999999998762
Q ss_pred ---hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 87 ---KRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 87 ---~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
..+|.+.++|||+.+|+.++|+.||+.-+
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa 117 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA 117 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc
Confidence 13567899999999999999999999754
No 294
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=3.2e-23 Score=164.90 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=80.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v 96 (121)
+|+++|++++|+++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+++.++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 589999999998888999999999999999999999999999999999999999999999887653 2334569999
Q ss_pred eeCCCC--C------CCCCHHHHHhh
Q psy16345 97 LQQDIF--F------PELTLRQTLEV 114 (121)
Q Consensus 97 ~Q~~~l--~------~~ltv~e~l~~ 114 (121)
+|++.+ + ..+++++++.+
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~ 108 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQD 108 (490)
T ss_pred ccCcchhhcccchhhccccHHHhccc
Confidence 998642 1 14688888754
No 295
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=2.5e-23 Score=182.05 Aligned_cols=95 Identities=28% Similarity=0.533 Sum_probs=85.9
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC-CEeCC----hhhccc
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN-KERLN----KRWKRK 92 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~-g~~~~----~~~~~~ 92 (121)
.|+++||+|.|+. .++|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++ |.++. +.++++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 5999999999974 369999999999999999999999999999999999999999999994 57664 256788
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++||+|++.+|+. |++||+.++.
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g~ 484 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYSL 484 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhcC
Confidence 9999999999975 9999999974
No 296
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.8e-23 Score=163.89 Aligned_cols=88 Identities=33% Similarity=0.538 Sum_probs=80.0
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+++++|+++.|+++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. +.++|++|+
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------~~i~~~~q~ 390 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-------ANIGYYAQD 390 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-------eEEEEEccc
Confidence 3699999999998888999999999999999999999999999999999999999999999873 469999998
Q ss_pred CC--CCCCCCHHHHHhh
Q psy16345 100 DI--FFPELTLRQTLEV 114 (121)
Q Consensus 100 ~~--l~~~ltv~e~l~~ 114 (121)
+. +++.+|+++|+.+
T Consensus 391 ~~~~~~~~~t~~~~~~~ 407 (530)
T PRK15064 391 HAYDFENDLTLFDWMSQ 407 (530)
T ss_pred ccccCCCCCcHHHHHHH
Confidence 64 5567899999865
No 297
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=1.5e-22 Score=166.19 Aligned_cols=95 Identities=27% Similarity=0.413 Sum_probs=86.1
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h----
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R---- 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~---- 88 (121)
+++++|++++|++ +.+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. +
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 5999999999953 469999999999999999999999999999999999999999999999998752 2
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
.++.++|++|++.+++++|+.||+.+.
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~ 110 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVP 110 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHH
Confidence 246799999999999999999999864
No 298
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=1.1e-22 Score=166.42 Aligned_cols=90 Identities=31% Similarity=0.555 Sum_probs=81.3
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+++++|+++.|+++++|+++||+|.+|+++||+||||||||||||+|+|+++|++|+|.+ |.. -.++|++|+
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~------~~i~y~~q~ 390 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK------LEVAYFDQH 390 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC------cEEEEEeCc
Confidence 4699999999999889999999999999999999999999999999999999999999998 432 259999998
Q ss_pred C-CCCCCCCHHHHHhhcc
Q psy16345 100 D-IFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~-~l~~~ltv~e~l~~~~ 116 (121)
+ .+++.+||.||+.++.
T Consensus 391 ~~~l~~~~tv~e~l~~~~ 408 (635)
T PRK11147 391 RAELDPEKTVMDNLAEGK 408 (635)
T ss_pred ccccCCCCCHHHHHHhhc
Confidence 6 5888899999998753
No 299
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.9e-23 Score=156.55 Aligned_cols=98 Identities=24% Similarity=0.382 Sum_probs=87.8
Q ss_pred cEEEEeeeEEEcCCc------------------------ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345 20 LELVFSGLSVTLDKR------------------------PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS 75 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~------------------------~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~ 75 (121)
..|+++|+.+-||.+ .-++|+||+++.||++.|+|-||||||||+|+|.+|..|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 458899999988642 24799999999999999999999999999999999999999
Q ss_pred cEEEECCEeCCh--------hhcccEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 76 GVIRLNKERLNK--------RWKRKICYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 76 G~i~~~g~~~~~--------~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|+|.++|+++.+ -+++++++|||.+.|+|+.||.||+.|++.
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 999999998852 245679999999999999999999999984
No 300
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=1e-22 Score=177.78 Aligned_cols=96 Identities=45% Similarity=0.672 Sum_probs=87.6
Q ss_pred EEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEEEECCEeCChhhcccE
Q psy16345 21 ELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVIRLNKERLNKRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~i 93 (121)
.++++||++.|+ .+.+|++||+++++|+++||+|||||||||||++|+|+.+ +++|+|.++|+++...+++.+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 489999999984 4679999999999999999999999999999999999987 688999999999876677889
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+||+|++.+++.+||+||+.++.
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHH
Confidence 99999988888999999999854
No 301
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-23 Score=148.52 Aligned_cols=96 Identities=31% Similarity=0.441 Sum_probs=87.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEe
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVL 97 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~ 97 (121)
+++.++++...+.+++|.++||++.+||.+-|.||||||||||||+|+|+++|++|+|+++|..+.. ..++.+-|+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 4678899999999999999999999999999999999999999999999999999999999988863 3456778888
Q ss_pred eCCCCCCCCCHHHHHhhcc
Q psy16345 98 QQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~ 116 (121)
-.+.+-+.+|++||+.|-.
T Consensus 82 H~~giK~eLTa~ENL~F~~ 100 (209)
T COG4133 82 HQPGIKTELTALENLHFWQ 100 (209)
T ss_pred ccccccchhhHHHHHHHHH
Confidence 8889999999999999854
No 302
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.89 E-value=5.1e-23 Score=166.18 Aligned_cols=91 Identities=15% Similarity=0.312 Sum_probs=83.0
Q ss_pred EEEEeeeEEEcCC-----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcc
Q psy16345 21 ELVFSGLSVTLDK-----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKR 91 (121)
Q Consensus 21 ~i~~~~l~~~~~~-----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~ 91 (121)
.++++|++|+|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+++
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 5999999999965 259999999999999999999999999999999999999999999999999862 5778
Q ss_pred cEEEEeeCCCCCCCCCHHHHH
Q psy16345 92 KICYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 92 ~i~~v~Q~~~l~~~ltv~e~l 112 (121)
.++||+|++.+|.+ |+++|.
T Consensus 417 ~i~~v~q~~~lf~~-ti~~n~ 436 (555)
T TIGR01194 417 LFSAIFADFHLFDD-LIGPDE 436 (555)
T ss_pred hCcEEccChhhhhh-hhhccc
Confidence 89999999998876 888874
No 303
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.88 E-value=1.5e-22 Score=177.53 Aligned_cols=93 Identities=27% Similarity=0.519 Sum_probs=85.9
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.|+++||+++|+. +++|+|+||+|++||.+||+|+||||||||+++|+|+++ .+|+|.++|.++. +.+|++++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 5999999999964 689999999999999999999999999999999999987 7899999999986 36889999
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
||||++.+|+. |+++||...
T Consensus 1296 ~IpQdp~LF~G-TIR~NLdp~ 1315 (1490)
T TIGR01271 1296 VIPQKVFIFSG-TFRKNLDPY 1315 (1490)
T ss_pred EEeCCCccCcc-CHHHHhCcc
Confidence 99999999987 999999754
No 304
>KOG0055|consensus
Probab=99.88 E-value=5.3e-23 Score=174.73 Aligned_cols=98 Identities=24% Similarity=0.504 Sum_probs=90.5
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.|+++||+|.|.. .++|+|+||++++|+.+||||||||||||.+.+|-++++|++|.|.++|+++. +.+|+++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 4999999999965 46999999999999999999999999999999999999999999999999986 4689999
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccCc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIADE 119 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~ 119 (121)
+.|.|+|.||.. |++||+.+|..++
T Consensus 1067 ~lVsQEP~LF~~-TIrENI~YG~~~v 1091 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNG-TIRENIAYGSEEV 1091 (1228)
T ss_pred ceeccCchhhcc-cHHHHHhccCCCC
Confidence 999999999976 9999999995443
No 305
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=2.9e-22 Score=160.06 Aligned_cols=97 Identities=32% Similarity=0.448 Sum_probs=85.1
Q ss_pred cEEEEeeeEEEcCC-----------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--
Q psy16345 20 LELVFSGLSVTLDK-----------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-- 86 (121)
Q Consensus 20 ~~i~~~~l~~~~~~-----------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-- 86 (121)
..++++|+++.|.. ..++++|||++++||++||||+||||||||.|+|+|+.+|++|.|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 35899999999962 25799999999999999999999999999999999999999999999998732
Q ss_pred ----hhhcccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345 87 ----KRWKRKICYVLQQDI--FFPELTLRQTLEVSI 116 (121)
Q Consensus 87 ----~~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~ 116 (121)
+..++++.+|||+|. |.|.+||.+++...+
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 245678999999985 899999999988655
No 306
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=1.7e-22 Score=147.15 Aligned_cols=78 Identities=32% Similarity=0.566 Sum_probs=69.8
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|+++||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|.++... ....+|++|++.+++.+|++||+.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999987531 12358999999999989999999875
No 307
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.88 E-value=6.9e-23 Score=137.47 Aligned_cols=75 Identities=47% Similarity=0.785 Sum_probs=70.4
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEeeCCCCCCCCCHHHH
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLRQT 111 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q~~~l~~~ltv~e~ 111 (121)
|+++||+|++|++++|+|+||||||||+++|+|+.+|++|.|.+++.++.. ..++.++|++|++.+++.+|+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999999999999999863 467789999999999999999987
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.88 E-value=6.8e-23 Score=144.20 Aligned_cols=76 Identities=42% Similarity=0.649 Sum_probs=69.0
Q ss_pred EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEee
Q psy16345 23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQ 98 (121)
Q Consensus 23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q 98 (121)
+++|+++.|+++++|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|++|
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 46899999988889999999999999999999999999999999999999999999999998742 34567899887
No 309
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.88 E-value=2.2e-22 Score=158.87 Aligned_cols=98 Identities=33% Similarity=0.473 Sum_probs=88.3
Q ss_pred cEEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 20 LELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
-.+.++++++.-. .+++++++||++.+|+.+|||||||||||||.|+|.|.++|.+|.|+++|-++. +.+.++|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 4699999998763 368999999999999999999999999999999999999999999999998875 3678899
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
||+||+-.||+. ||.||+.-..++
T Consensus 413 GYLPQdVeLF~G-TIaeNIaRf~~~ 436 (580)
T COG4618 413 GYLPQDVELFDG-TIAENIARFGEE 436 (580)
T ss_pred CcCcccceecCC-cHHHHHHhcccc
Confidence 999999999988 999999865544
No 310
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=7.4e-23 Score=145.86 Aligned_cols=98 Identities=33% Similarity=0.555 Sum_probs=90.2
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC-EeCCh-----hhcccE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK-ERLNK-----RWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g-~~~~~-----~~~~~i 93 (121)
..+.+++++++|++-.+++++||++.+||.-+|||||||||||+|.+|+|-.+|+.|+++|+| .++.+ ..+..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 458999999999999999999999999999999999999999999999999999999999999 66652 456779
Q ss_pred EEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|--||.|..|..+||+||+.++..
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~ 107 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALN 107 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhc
Confidence 999999999999999999998764
No 311
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.87 E-value=2.3e-22 Score=160.06 Aligned_cols=95 Identities=29% Similarity=0.401 Sum_probs=80.1
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCC-----hhhcccE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLN-----KRWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~-----~~~~~~i 93 (121)
.+++++|+++.|+++.+|+++||++++|++++|+||||||||||+|+|+|+.++ ++|+|+++|+++. ..+++++
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 469999999999888899999999999999999999999999999999998775 6999999997652 1245679
Q ss_pred EEEeeCCCCCC--CCCHHHHHhh
Q psy16345 94 CYVLQQDIFFP--ELTLRQTLEV 114 (121)
Q Consensus 94 ~~v~Q~~~l~~--~ltv~e~l~~ 114 (121)
+|++|++.++. ..++++++.+
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~ 361 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILS 361 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHh
Confidence 99999876543 2467776653
No 312
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.87 E-value=1.8e-22 Score=146.56 Aligned_cols=87 Identities=33% Similarity=0.342 Sum_probs=75.0
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI 101 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~ 101 (121)
+.+++++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..+...
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--------~~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL--------LGLGGG 94 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------hccccc
Confidence 778999999999999999999999999999999999999999999999999999999999987531 111234
Q ss_pred CCCCCCHHHHHhhcc
Q psy16345 102 FFPELTLRQTLEVSI 116 (121)
Q Consensus 102 l~~~ltv~e~l~~~~ 116 (121)
+++.+|++||+.+..
T Consensus 95 ~~~~~tv~enl~~~~ 109 (224)
T cd03220 95 FNPELTGRENIYLNG 109 (224)
T ss_pred CCCCCcHHHHHHHHH
Confidence 556789999998653
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=3.2e-22 Score=159.70 Aligned_cols=91 Identities=25% Similarity=0.437 Sum_probs=80.4
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~ 94 (121)
..++++|+++ .+++++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+++.++
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 3589999985 47999999999999999999999999999999999999999999999988742 2456799
Q ss_pred EEeeCC---CCCCCCCHHHHHhhc
Q psy16345 95 YVLQQD---IFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~---~l~~~ltv~e~l~~~ 115 (121)
||+|++ .+++.+|++||+.+.
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~ 354 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLT 354 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhh
Confidence 999996 477889999999864
No 314
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.87 E-value=6.4e-22 Score=162.67 Aligned_cols=88 Identities=25% Similarity=0.386 Sum_probs=80.4
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.++++|+++.|+ ++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.+++ +++++||+|+
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-------~~~i~~v~Q~ 523 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-------KGKLFYVPQR 523 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-------CCcEEEECCC
Confidence 599999999995 56799999999999999999999999999999999999999999998763 4579999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++. |++||+.++.
T Consensus 524 ~~l~~~-tv~eni~~~~ 539 (659)
T TIGR00954 524 PYMTLG-TLRDQIIYPD 539 (659)
T ss_pred CCCCCc-CHHHHHhcCC
Confidence 998887 9999999864
No 315
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.87 E-value=6.8e-22 Score=135.01 Aligned_cols=70 Identities=34% Similarity=0.604 Sum_probs=64.1
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
++++++++.|++.++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +.++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-------~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-------VKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-------EEEEEEcc
Confidence 46899999998888999999999999999999999999999999999999999999999984 35777776
No 316
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.3e-22 Score=143.57 Aligned_cols=97 Identities=31% Similarity=0.474 Sum_probs=87.5
Q ss_pred cEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCccEEEECCEeCC-----hhhcc
Q psy16345 20 LELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDSGVIRLNKERLN-----KRWKR 91 (121)
Q Consensus 20 ~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~-----~~~~~ 91 (121)
.+++++||.++..+ +.+|+++||+|++||+.+|+||||||||||.++|+|.. .+++|+|.|+|+++. .+.+.
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 46999999999988 49999999999999999999999999999999999975 678999999999985 25677
Q ss_pred cEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 92 KICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 92 ~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.+..-||.|.-+|..++.+.+..+.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~ 106 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAM 106 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHH
Confidence 8999999999999999998887655
No 317
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=5.1e-22 Score=144.41 Aligned_cols=80 Identities=29% Similarity=0.395 Sum_probs=69.8
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC----CccEEEECCEeCCh-hh-cccEEEEeeCCC--CCCCCC
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL----DSGVIRLNKERLNK-RW-KRKICYVLQQDI--FFPELT 107 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~----~~G~i~~~g~~~~~-~~-~~~i~~v~Q~~~--l~~~lt 107 (121)
+++++||+|++|++++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .. ++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999998 89999999998753 22 357999999985 556789
Q ss_pred HHHHHhhc
Q psy16345 108 LRQTLEVS 115 (121)
Q Consensus 108 v~e~l~~~ 115 (121)
+++|+.+.
T Consensus 81 ~~~~~~~~ 88 (230)
T TIGR02770 81 MGNHAIET 88 (230)
T ss_pred HHHHHHHH
Confidence 99988653
No 318
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.1e-22 Score=147.14 Aligned_cols=98 Identities=32% Similarity=0.418 Sum_probs=85.0
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccE
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKI 93 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i 93 (121)
+..|+++|+++.|+++++|+++|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+... .++|++|
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 35699999999999999999999999999999999999999999999999999999999999998874 3688999
Q ss_pred EEEeeCC--CCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQD--IFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~--~l~~~ltv~e~l~~~~ 116 (121)
|||.-.- .+.+..+++|.++.+.
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~ 133 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGF 133 (257)
T ss_pred CccCHHHHhhcccccccceeeeecc
Confidence 9998542 3445567777776543
No 319
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.3e-22 Score=158.05 Aligned_cols=91 Identities=20% Similarity=0.380 Sum_probs=80.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
.++++++++. .+++++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|+++.. ..++.++|
T Consensus 257 ~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 257 RLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 5888999842 58999999999999999999999999999999999999999999999988641 23567999
Q ss_pred EeeCC---CCCCCCCHHHHHhhc
Q psy16345 96 VLQQD---IFFPELTLRQTLEVS 115 (121)
Q Consensus 96 v~Q~~---~l~~~ltv~e~l~~~ 115 (121)
++|++ .+++.+|++||+.++
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~ 355 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINIS 355 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccc
Confidence 99996 378889999998764
No 320
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.86 E-value=1.2e-21 Score=160.02 Aligned_cols=84 Identities=50% Similarity=0.741 Sum_probs=77.2
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCC-hhhcccEEEEeeCCCCCCCCCH
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLN-KRWKRKICYVLQQDIFFPELTL 108 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~-~~~~~~i~~v~Q~~~l~~~ltv 108 (121)
++++|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|.++. ..+++.++||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 578999999999999999999999999999999999998874 799999999986 3567789999999999999999
Q ss_pred HHHHhhcc
Q psy16345 109 RQTLEVSI 116 (121)
Q Consensus 109 ~e~l~~~~ 116 (121)
+||+.|+.
T Consensus 117 ~e~l~f~~ 124 (617)
T TIGR00955 117 REHLMFQA 124 (617)
T ss_pred HHHHHHHH
Confidence 99999865
No 321
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=5.5e-22 Score=138.40 Aligned_cols=95 Identities=26% Similarity=0.450 Sum_probs=87.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----------hhhc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----------KRWK 90 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----------~~~~ 90 (121)
.|+++++++.||...+|.||+|+.++|+.+.++||||||||||+|.|.-+.-|.+|+..+-+...+ .++|
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999998776542 2578
Q ss_pred ccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 91 RKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 91 ~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+.+|+|||+.+++|++||.||+..+
T Consensus 82 ~~vgmvfqqy~lwphltv~enliea 106 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEA 106 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhh
Confidence 8999999999999999999998754
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.8e-21 Score=158.42 Aligned_cols=84 Identities=25% Similarity=0.487 Sum_probs=71.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
+|+++|++++|+++.+|+++||+|.+|+++||+||||||||||||+|+|+++|++|+|.+++.. .++|++|++
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-------~i~~~~q~~ 73 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-------QLAWVNQET 73 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-------EEEEEecCC
Confidence 3789999999999999999999999999999999999999999999999999999999998732 488998864
Q ss_pred CCCCCCCHHHHH
Q psy16345 101 IFFPELTLRQTL 112 (121)
Q Consensus 101 ~l~~~ltv~e~l 112 (121)
..+ ..++.+++
T Consensus 74 ~~~-~~~~~~~v 84 (638)
T PRK10636 74 PAL-PQPALEYV 84 (638)
T ss_pred CCC-CCCHHHHH
Confidence 333 23555544
No 323
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=7.5e-22 Score=140.00 Aligned_cols=96 Identities=31% Similarity=0.441 Sum_probs=81.6
Q ss_pred EEEEeeeEEEcCC---------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----h
Q psy16345 21 ELVFSGLSVTLDK---------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----K 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~---------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~ 87 (121)
.++++|+++.|.. ..+++.|||++++|+.+|+||.||||||||.|+|+|+++|++|+|.+||+++. .
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 3788999888742 24899999999999999999999999999999999999999999999999985 2
Q ss_pred hhcccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQDI--FFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~ 116 (121)
.+.++|-++||||+ +.|.+.+-..+...+
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL 114 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPL 114 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchh
Confidence 35667999999986 677777766665544
No 324
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=2.4e-21 Score=155.65 Aligned_cols=91 Identities=32% Similarity=0.511 Sum_probs=83.3
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+|.++++++.|+++++|+++||++.+|+.+||||+||||||||||+|+|.+.|++|+|..... .+++|+.|+
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-------~~v~~l~Q~ 74 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-------LRVGYLSQE 74 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-------ceEEEeCCC
Confidence 3689999999999999999999999999999999999999999999999999999999987632 369999999
Q ss_pred CCCCCCCCHHHHHhhccc
Q psy16345 100 DIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~~ 117 (121)
+.+.+..||.+.+..+..
T Consensus 75 ~~~~~~~tv~~~v~~~~~ 92 (530)
T COG0488 75 PPLDPEKTVLDYVIEGFG 92 (530)
T ss_pred CCcCCCccHHHHHHhhhH
Confidence 999988899999887653
No 325
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2e-21 Score=154.70 Aligned_cols=90 Identities=22% Similarity=0.359 Sum_probs=78.5
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~ 94 (121)
.+|+++|+++.+ +.+|+++||++++|+++||+|+||||||||+|+|+|+.+|++|+|.++|+++.. .+++.++
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 469999999874 469999999999999999999999999999999999999999999999988742 2356699
Q ss_pred EEeeCC---CCCCCCCHHHH
Q psy16345 95 YVLQQD---IFFPELTLRQT 111 (121)
Q Consensus 95 ~v~Q~~---~l~~~ltv~e~ 111 (121)
|++|++ .+++++++.+|
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred EcCCchhhCCcccCCcHHHh
Confidence 999985 46788887766
No 326
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=140.62 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=74.2
Q ss_pred cEEEEeeeEEEcC--------------------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE
Q psy16345 20 LELVFSGLSVTLD--------------------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79 (121)
Q Consensus 20 ~~i~~~~l~~~~~--------------------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~ 79 (121)
+.++++||++.|. .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 4577788776652 13489999999999999999999999999999999999999999999
Q ss_pred ECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 80 LNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 80 ~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
++|. +++++|.+.+.+.+|+++|+.+.
T Consensus 83 ~~g~---------~~~~~~~~~~~~~~tv~enl~~~ 109 (264)
T PRK13546 83 RNGE---------VSVIAISAGLSGQLTGIENIEFK 109 (264)
T ss_pred ECCE---------EeEEecccCCCCCCcHHHHHHHH
Confidence 9874 45777877777888999999764
No 327
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=5.1e-22 Score=143.25 Aligned_cols=96 Identities=29% Similarity=0.482 Sum_probs=83.3
Q ss_pred EEEeeeEEEcC-----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhccc
Q psy16345 22 LVFSGLSVTLD-----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRK 92 (121)
Q Consensus 22 i~~~~l~~~~~-----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~ 92 (121)
+++.|+.+.|. .+++|+++|++|++|+++.|+|.||||||||+++|+|-+.|++|+|.++|.++++ .+...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 45667666653 3689999999999999999999999999999999999999999999999999974 34556
Q ss_pred EEEEeeCCC--CCCCCCHHHHHhhccc
Q psy16345 93 ICYVLQQDI--FFPELTLRQTLEVSIA 117 (121)
Q Consensus 93 i~~v~Q~~~--l~~~ltv~e~l~~~~~ 117 (121)
++-|||+|. .++.+|++||+.+...
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~ 108 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAES 108 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHh
Confidence 888999985 7899999999987653
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.3e-21 Score=155.99 Aligned_cols=87 Identities=30% Similarity=0.404 Sum_probs=76.7
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+|+++|+++.|+++.+|+++||+|.+|+++||+||||||||||||+|+|+++|++|+|.+++. ..++|++|+
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~igy~~Q~ 383 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-------IKLGYFAQH 383 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-------EEEEEecCc
Confidence 3699999999999889999999999999999999999999999999999999999999999742 269999997
Q ss_pred C--CCCCCCCHHHHHh
Q psy16345 100 D--IFFPELTLRQTLE 113 (121)
Q Consensus 100 ~--~l~~~ltv~e~l~ 113 (121)
. .+.+..++.+++.
T Consensus 384 ~~~~l~~~~~~~~~~~ 399 (638)
T PRK10636 384 QLEFLRADESPLQHLA 399 (638)
T ss_pred chhhCCccchHHHHHH
Confidence 4 3556668887764
No 329
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.3e-21 Score=145.80 Aligned_cols=83 Identities=36% Similarity=0.536 Sum_probs=74.4
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccEEEEeeCCCCCCCCC
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKICYVLQQDIFFPELT 107 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i~~v~Q~~~l~~~lt 107 (121)
.-=+++|+++.-.++||.|+||||||||+|+|+|+.+|++|.|.++|+.+.+ .-+|+|||||||..|||++|
T Consensus 13 ~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred eEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 3457889988878999999999999999999999999999999999988741 34778999999999999999
Q ss_pred HHHHHhhcccC
Q psy16345 108 LRQTLEVSIAD 118 (121)
Q Consensus 108 v~e~l~~~~~~ 118 (121)
|+.|+.|+...
T Consensus 93 VrgNL~YG~~~ 103 (352)
T COG4148 93 VRGNLRYGMWK 103 (352)
T ss_pred Eecchhhhhcc
Confidence 99999998753
No 330
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=8.1e-21 Score=166.31 Aligned_cols=97 Identities=37% Similarity=0.574 Sum_probs=85.0
Q ss_pred cEEEEeeeEEEcC-------------CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEe
Q psy16345 20 LELVFSGLSVTLD-------------KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKER 84 (121)
Q Consensus 20 ~~i~~~~l~~~~~-------------~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~ 84 (121)
..+.++||++.+. ++.+|+++|+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 3689999998862 24799999999999999999999999999999999998763 68999999988
Q ss_pred CCh-hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 85 LNK-RWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 85 ~~~-~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
... ..++.++||+|++.+++.+||+||+.++.
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a 978 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSA 978 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHH
Confidence 753 45677999999999999999999998853
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.84 E-value=1.1e-20 Score=154.78 Aligned_cols=85 Identities=24% Similarity=0.348 Sum_probs=71.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
+|+++|+++.|+++++|+++||+|.+|+++||+||||||||||||+|+|+++|++|+|.+++.. .++|++|.+
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-------~~~~l~q~~ 75 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-------IVARLQQDP 75 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-------EEEEeccCC
Confidence 5999999999998899999999999999999999999999999999999999999999997631 367777765
Q ss_pred CCCCCCCHHHHH
Q psy16345 101 IFFPELTLRQTL 112 (121)
Q Consensus 101 ~l~~~ltv~e~l 112 (121)
......++.+++
T Consensus 76 ~~~~~~~v~~~~ 87 (635)
T PRK11147 76 PRNVEGTVYDFV 87 (635)
T ss_pred CCCCCCCHHHHH
Confidence 332233555543
No 332
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.3e-20 Score=129.73 Aligned_cols=75 Identities=40% Similarity=0.639 Sum_probs=68.7
Q ss_pred EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEee
Q psy16345 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQ 98 (121)
Q Consensus 24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q 98 (121)
++++++.|.++.++++++|++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+++.++|++|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 5789999988889999999999999999999999999999999999999999999999987642 45677999998
No 333
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=5.8e-21 Score=152.93 Aligned_cols=90 Identities=26% Similarity=0.370 Sum_probs=78.4
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC 94 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~ 94 (121)
.+++++|+++ .+|+++||++++|+++||+||||||||||+|+|+|+++|++|+|.++|+++.. .+++.++
T Consensus 267 ~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 267 PVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred ceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 3699999984 26999999999999999999999999999999999999999999999988742 2346799
Q ss_pred EEeeCC---CCCCCCCHHHHHhh
Q psy16345 95 YVLQQD---IFFPELTLRQTLEV 114 (121)
Q Consensus 95 ~v~Q~~---~l~~~ltv~e~l~~ 114 (121)
|++|++ .+++.+|+.+|+..
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHh
Confidence 999985 47888899999853
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=1e-20 Score=154.05 Aligned_cols=86 Identities=29% Similarity=0.342 Sum_probs=78.8
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+++++|+++.|++. .|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++ ..++|++|+
T Consensus 339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---------~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---------LKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---------eeEEEeccc
Confidence 469999999999764 5999999999999999999999999999999999999999999885 259999999
Q ss_pred CCCCCCCCHHHHHhhc
Q psy16345 100 DIFFPELTLRQTLEVS 115 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~ 115 (121)
+.+++.+||+||+.+.
T Consensus 409 ~~~~~~~tv~e~l~~~ 424 (590)
T PRK13409 409 IKPDYDGTVEDLLRSI 424 (590)
T ss_pred ccCCCCCcHHHHHHHH
Confidence 8888889999999875
No 335
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.6e-20 Score=141.60 Aligned_cols=95 Identities=25% Similarity=0.402 Sum_probs=80.9
Q ss_pred EEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-C----CccEEEECCEeCC---h--
Q psy16345 22 LVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-L----DSGVIRLNKERLN---K-- 87 (121)
Q Consensus 22 i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-~----~~G~i~~~g~~~~---~-- 87 (121)
++++||+..|.. ..++++|||++++||++||||+|||||||+.+.|+|+++ + .+|+|.|+|+++. .
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 688999999853 369999999999999999999999999999999999997 3 5699999999763 1
Q ss_pred ---hhcccEEEEeeCCC--CCCCCCHHHHHhhcc
Q psy16345 88 ---RWKRKICYVLQQDI--FFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ---~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~ 116 (121)
.+.+.|+|+||++. |.|-+++.+.+.-..
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l 115 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL 115 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHH
Confidence 13457999999984 888899988876544
No 336
>KOG0054|consensus
Probab=99.84 E-value=8.1e-21 Score=163.86 Aligned_cols=93 Identities=27% Similarity=0.469 Sum_probs=87.4
Q ss_pred cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
-.|+++|++.+|.. ..+|++|||+|++||.+||||+.|||||||+.+|.++..|.+|+|.+||.++. .++|+++
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 35999999999965 47999999999999999999999999999999999999999999999999997 4799999
Q ss_pred EEEeeCCCCCCCCCHHHHHh
Q psy16345 94 CYVLQQDIFFPELTLRQTLE 113 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~ 113 (121)
+.+||||.+|.. |+|.||.
T Consensus 1217 sIIPQdPvLFsG-TvR~NLD 1235 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSG-TVRFNLD 1235 (1381)
T ss_pred eeeCCCCceecC-ccccccC
Confidence 999999999987 9999986
No 337
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=3.4e-20 Score=148.61 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=74.4
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL 97 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~ 97 (121)
+++++|+++.|++ +++|+++||+|++|+++||+|+|||||||||++|+|+++|++|+|.++|.+. ++.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------~i~ 91 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------LIA 91 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---------eEE
Confidence 5899999999976 4699999999999999999999999999999999999999999999998652 223
Q ss_pred eCCCCCCCCCHHHHHhhc
Q psy16345 98 QQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~ 115 (121)
+.+.+++.+|++||+.+.
T Consensus 92 ~~~~l~~~lTV~EnL~l~ 109 (549)
T PRK13545 92 ISSGLNGQLTGIENIELK 109 (549)
T ss_pred eccccCCCCcHHHHHHhh
Confidence 344566778999998763
No 338
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=6.9e-21 Score=139.09 Aligned_cols=73 Identities=33% Similarity=0.443 Sum_probs=62.7
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee-CCCCCCCCCHHHHH
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ-QDIFFPELTLRQTL 112 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q-~~~l~~~ltv~e~l 112 (121)
.++|+||||++++||.+||||+||||||||||+|+|.++|++|+|.++|+- +++.. ...+.|++|.+||+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v---------~~li~lg~Gf~pelTGreNi 110 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV---------APLIELGAGFDPELTGRENI 110 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE---------ehhhhcccCCCcccchHHHH
Confidence 468999999999999999999999999999999999999999999999854 33322 23467889999998
Q ss_pred hhc
Q psy16345 113 EVS 115 (121)
Q Consensus 113 ~~~ 115 (121)
.+-
T Consensus 111 ~l~ 113 (249)
T COG1134 111 YLR 113 (249)
T ss_pred HHH
Confidence 863
No 339
>KOG0061|consensus
Probab=99.83 E-value=2.7e-20 Score=152.08 Aligned_cols=98 Identities=50% Similarity=0.787 Sum_probs=86.9
Q ss_pred ccEEEEeeeEEEcC-----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECCEeCC-hhh
Q psy16345 19 PLELVFSGLSVTLD-----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKERLN-KRW 89 (121)
Q Consensus 19 ~~~i~~~~l~~~~~-----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~-~~~ 89 (121)
.+.+.+++++.... .+++|++||..+++||++||+|||||||||||++|+|.... .+|+|.+||++.. +.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 45688888887763 36899999999999999999999999999999999998764 6899999997765 467
Q ss_pred cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 90 KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 90 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++..|||.||+.+++.+||+|++.+.+
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A 129 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSA 129 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHH
Confidence 888999999999999999999999876
No 340
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.83 E-value=2.3e-20 Score=164.21 Aligned_cols=86 Identities=26% Similarity=0.454 Sum_probs=79.9
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
.++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| +++||+|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~yv~Q 706 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------SVAYVPQ 706 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---------EEEEEcC
Confidence 5999999999964 5799999999999999999999999999999999999999999999986 5999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++ .|++||+.++.
T Consensus 707 ~~~l~~-~Ti~eNI~~g~ 723 (1522)
T TIGR00957 707 QAWIQN-DSLRENILFGK 723 (1522)
T ss_pred CccccC-CcHHHHhhcCC
Confidence 998875 59999999875
No 341
>PLN03130 ABC transporter C family member; Provisional
Probab=99.83 E-value=1.3e-20 Score=166.27 Aligned_cols=87 Identities=25% Similarity=0.444 Sum_probs=80.3
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc-cEEEECCEeCChhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKERLNKRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~-G~i~~~g~~~~~~~~~~i~~v 96 (121)
.++++|++|.|+. +++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+ |+|.+ +.+++||
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l---------~~~Iayv 684 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI---------RGTVAYV 684 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---------cCeEEEE
Confidence 5999999999963 579999999999999999999999999999999999999999 89985 3579999
Q ss_pred eeCCCCCCCCCHHHHHhhccc
Q psy16345 97 LQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
+|++.+|.. |++||+.|+.+
T Consensus 685 ~Q~p~Lfng-TIreNI~fg~~ 704 (1622)
T PLN03130 685 PQVSWIFNA-TVRDNILFGSP 704 (1622)
T ss_pred cCccccCCC-CHHHHHhCCCc
Confidence 999999976 99999999875
No 342
>PLN03232 ABC transporter C family member; Provisional
Probab=99.83 E-value=1.3e-20 Score=165.52 Aligned_cols=88 Identities=23% Similarity=0.384 Sum_probs=79.6
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL 97 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~ 97 (121)
.++++|++|.|+. +++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+|.+. .+++.++||+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--------~~~~~Iayv~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--------VIRGSVAYVP 685 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--------EecCcEEEEc
Confidence 5999999999963 5799999999999999999999999999999999999999998763 2456899999
Q ss_pred eCCCCCCCCCHHHHHhhccc
Q psy16345 98 QQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|++.+|.. |++||+.|+.+
T Consensus 686 Q~p~Lf~g-TIreNI~fg~~ 704 (1495)
T PLN03232 686 QVSWIFNA-TVRENILFGSD 704 (1495)
T ss_pred Cccccccc-cHHHHhhcCCc
Confidence 99999976 99999999864
No 343
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=2.1e-20 Score=131.99 Aligned_cols=68 Identities=28% Similarity=0.347 Sum_probs=61.2
Q ss_pred eeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCC
Q psy16345 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI 101 (121)
Q Consensus 25 ~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~ 101 (121)
.|+++.|+++.+++++ |++++|++++|+||||||||||+|+|+|+++|++|+|.++|.. ++|++|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--------i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT--------PVYKPQYID 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE--------EEEEcccCC
Confidence 6899999999999985 9999999999999999999999999999999999999999854 677777643
No 344
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.2e-21 Score=147.79 Aligned_cols=99 Identities=28% Similarity=0.503 Sum_probs=91.7
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~ 95 (121)
.+.+.+++|.|. ++++|+++||++++|+.++++|++|+||||++|+|.+++++.+|.|.++|++++ ..+|+.||.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~ 341 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence 488999999995 589999999999999999999999999999999999999999999999999986 367889999
Q ss_pred EeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIADED 120 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~~~ 120 (121)
||||..||.+ |++.|+.++.++++
T Consensus 342 VPQDtvLFND-ti~yni~ygr~~at 365 (497)
T COG5265 342 VPQDTVLFND-TIAYNIKYGRPDAT 365 (497)
T ss_pred Ccccceehhh-hHHHHHhccCcccc
Confidence 9999999987 99999999987654
No 345
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.83 E-value=2e-20 Score=135.06 Aligned_cols=73 Identities=25% Similarity=0.300 Sum_probs=62.7
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE-ECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHh
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-LNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~-~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~ 113 (121)
++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|. +++..+ .+.+.+.+++.+|++||+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL---------PLGANSFILPGLTGEENAR 71 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee---------ccccccccCCcCcHHHHHH
Confidence 479999999999999999999999999999999999999999997 766432 1334567888999999998
Q ss_pred hcc
Q psy16345 114 VSI 116 (121)
Q Consensus 114 ~~~ 116 (121)
+..
T Consensus 72 ~~~ 74 (213)
T PRK15177 72 MMA 74 (213)
T ss_pred HHH
Confidence 753
No 346
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.83 E-value=4.9e-20 Score=147.32 Aligned_cols=95 Identities=31% Similarity=0.477 Sum_probs=81.8
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC----ccEEEECCEeCCh-----
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD----SGVIRLNKERLNK----- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~----~G~i~~~g~~~~~----- 87 (121)
.++++||++.|.. .++++||||++.+||++||+|+|||||||+.++|.|++++. +|+|.|+|+++..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5999999999853 25999999999999999999999999999999999999877 7999999987631
Q ss_pred ---hhcccEEEEeeCCC--CCCCCCHHHHHhhc
Q psy16345 88 ---RWKRKICYVLQQDI--FFPELTLRQTLEVS 115 (121)
Q Consensus 88 ---~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~ 115 (121)
.+.+.|+|+||++. |.|-+|+.+.+.-.
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~ 117 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA 117 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHH
Confidence 24567999999985 77778888877643
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=2e-20 Score=163.85 Aligned_cols=83 Identities=40% Similarity=0.632 Sum_probs=76.0
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCCh-hhcccEEEEeeCCCCCCCCCHH
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLNK-RWKRKICYVLQQDIFFPELTLR 109 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~-~~~~~i~~v~Q~~~l~~~ltv~ 109 (121)
+.+|+|+|+.+++|++++|+||||||||||||+|+|+++|+ +|+|.++|.++.+ ..++.++||+|++.+++.+||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 56899999999999999999999999999999999999988 9999999998753 3366799999999999999999
Q ss_pred HHHhhcc
Q psy16345 110 QTLEVSI 116 (121)
Q Consensus 110 e~l~~~~ 116 (121)
|++.|+.
T Consensus 258 EtL~f~a 264 (1470)
T PLN03140 258 ETLDFSA 264 (1470)
T ss_pred HHHHHHH
Confidence 9999864
No 348
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=4.4e-20 Score=136.04 Aligned_cols=73 Identities=32% Similarity=0.418 Sum_probs=63.5
Q ss_pred ceEEeeEEEEe-----CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHH
Q psy16345 35 PILKDVSGVVK-----PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLR 109 (121)
Q Consensus 35 ~~l~~vsl~i~-----~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~ 109 (121)
..+.+++|++. +|++++|+||||||||||+++|+|+++|++|+|.++|. .++|++|++.+++.+|++
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------eEEEecccccCCCCCCHH
Confidence 35666666665 79999999999999999999999999999999999874 589999998877778999
Q ss_pred HHHhhc
Q psy16345 110 QTLEVS 115 (121)
Q Consensus 110 e~l~~~ 115 (121)
|++.+.
T Consensus 80 e~l~~~ 85 (246)
T cd03237 80 DLLSSI 85 (246)
T ss_pred HHHHHH
Confidence 998754
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=99.82 E-value=9.3e-20 Score=151.09 Aligned_cols=83 Identities=23% Similarity=0.368 Sum_probs=71.3
Q ss_pred cEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 20 LELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 20 ~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
.+++++|+++.|++ +.+|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++ +.+++|++|
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-------~~~igyv~Q 579 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-------KVRMAVFSQ 579 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-------ceeEEEEec
Confidence 46999999999964 5699999999999999999999999999999999999999999999865 246999999
Q ss_pred CCCCCCCCCHHHH
Q psy16345 99 QDIFFPELTLRQT 111 (121)
Q Consensus 99 ~~~l~~~ltv~e~ 111 (121)
++. ..+++.++
T Consensus 580 ~~~--~~l~~~~~ 590 (718)
T PLN03073 580 HHV--DGLDLSSN 590 (718)
T ss_pred ccc--ccCCcchh
Confidence 852 33445444
No 350
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.82 E-value=4.1e-20 Score=134.02 Aligned_cols=73 Identities=32% Similarity=0.471 Sum_probs=63.7
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCC--CCCCHHHHHhhc
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFF--PELTLRQTLEVS 115 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~--~~ltv~e~l~~~ 115 (121)
|+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.. .+++++|++|++.++ ..+|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhc
Confidence 5789999999999999999999999999999999999999987643 456799999998764 347999998765
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.81 E-value=7e-20 Score=160.15 Aligned_cols=83 Identities=34% Similarity=0.583 Sum_probs=74.5
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC----CCCccEEEECCEeCCh---hhcccEEEEeeCCCCCCCC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV----KLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPEL 106 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~----~~~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~l 106 (121)
+++|+|+|+.+++||+++|+||||||||||||+|+|+. .|.+|+|.++|.++.+ ..++.++||+|++.+++.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 45999999999999999999999999999999999986 4689999999998742 3456799999999999999
Q ss_pred CHHHHHhhcc
Q psy16345 107 TLRQTLEVSI 116 (121)
Q Consensus 107 tv~e~l~~~~ 116 (121)
||+|++.++.
T Consensus 154 TV~E~l~f~~ 163 (1394)
T TIGR00956 154 TVGETLDFAA 163 (1394)
T ss_pred CHHHHHHHHH
Confidence 9999999864
No 352
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.80 E-value=2.2e-19 Score=157.80 Aligned_cols=74 Identities=30% Similarity=0.578 Sum_probs=69.1
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHh
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~ 113 (121)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++||+|++.+++. |++||+.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------RISFSPQTSWIMPG-TIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------EEEEEeCCCccCCc-cHHHHHH
Confidence 4689999999999999999999999999999999999999999999987 59999999999875 9999999
Q ss_pred hccc
Q psy16345 114 VSIA 117 (121)
Q Consensus 114 ~~~~ 117 (121)
|+..
T Consensus 509 ~g~~ 512 (1490)
T TIGR01271 509 FGLS 512 (1490)
T ss_pred hccc
Confidence 8753
No 353
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=5.3e-20 Score=136.34 Aligned_cols=89 Identities=21% Similarity=0.313 Sum_probs=72.4
Q ss_pred eeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE-----------ECCEeCCh---hh
Q psy16345 25 SGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-----------LNKERLNK---RW 89 (121)
Q Consensus 25 ~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~-----------~~g~~~~~---~~ 89 (121)
.+++++|+.+ .+++++++ +.+|++++|+||||||||||||+|+|+++|++|+|. ++|.++.. ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4688999765 59999994 999999999999999999999999999999999996 77777642 11
Q ss_pred c---ccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 90 K---RKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 90 ~---~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+ ..++|++|+..+++. ++.+++.+.
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~ 110 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGEL 110 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHH
Confidence 1 247899998877774 677776543
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=135.31 Aligned_cols=99 Identities=25% Similarity=0.390 Sum_probs=86.6
Q ss_pred CccEEEEeeeEEEcCC-----------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 18 RPLELVFSGLSVTLDK-----------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 18 ~~~~i~~~~l~~~~~~-----------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
.++.++.+++++.|.- -.+++++||++++|+.+||+|+||||||||-++|.+++++. |+|.|.|+++.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 3556999999988731 25899999999999999999999999999999999999876 99999999986
Q ss_pred h-------hhcccEEEEeeCCC--CCCCCCHHHHHhhccc
Q psy16345 87 K-------RWKRKICYVLQQDI--FFPELTLRQTLEVSIA 117 (121)
Q Consensus 87 ~-------~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~~ 117 (121)
. .+|+++..|||||+ |.|.+||.+.+..++.
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence 1 46888999999996 8899999999887763
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=8.6e-19 Score=129.83 Aligned_cols=67 Identities=30% Similarity=0.374 Sum_probs=61.3
Q ss_pred cEEEEeeeEEEcCC---------cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 20 LELVFSGLSVTLDK---------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 20 ~~i~~~~l~~~~~~---------~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
..++++|+++.|.. ..++++|||+|++||++||||+||||||||-|+|.||++|++|+|+|+|+++.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~ 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT 78 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence 35899999999842 26899999999999999999999999999999999999999999999998863
No 356
>KOG0059|consensus
Probab=99.77 E-value=3.7e-19 Score=150.29 Aligned_cols=96 Identities=30% Similarity=0.459 Sum_probs=88.7
Q ss_pred EEEEeeeEEEcCCcc-eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEE
Q psy16345 21 ELVFSGLSVTLDKRP-ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~-~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~ 94 (121)
.+.++++++.|+.+. +++++|+.+++||+.|+.|+|||||||++++|.|..+|++|++.++|.++.. +.++.+|
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG 643 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG 643 (885)
T ss_pred eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc
Confidence 478899999998766 9999999999999999999999999999999999999999999999988852 3678899
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|+||+..+++.+|.+|++.+.+
T Consensus 644 yCPQ~d~l~~~lT~rEhL~~~a 665 (885)
T KOG0059|consen 644 YCPQFDALWEELTGREHLEFYA 665 (885)
T ss_pred cCCchhhhhhhccHHHHHHHHH
Confidence 9999999999999999998755
No 357
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.77 E-value=9.7e-19 Score=114.18 Aligned_cols=72 Identities=22% Similarity=0.052 Sum_probs=60.9
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEeeCCCCCCCCCHH
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLR 109 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q~~~l~~~ltv~ 109 (121)
+.+|++++|++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|.. |++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHH
Confidence 56899999999999999999999999999999986 7899999998752 345556777776 4544 999
Q ss_pred HHHhh
Q psy16345 110 QTLEV 114 (121)
Q Consensus 110 e~l~~ 114 (121)
||+.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99976
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.76 E-value=4.9e-18 Score=136.64 Aligned_cols=92 Identities=35% Similarity=0.508 Sum_probs=80.3
Q ss_pred ccEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345 19 PLELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL 97 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~ 97 (121)
...++++|+++.|++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|.|.+... -++||+.
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-------v~igyf~ 391 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-------VKIGYFD 391 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-------eEEEEEE
Confidence 345999999999965 69999999999999999999999999999999999999999999998632 3699999
Q ss_pred eCC-CCCCCCCHHHHHhhccc
Q psy16345 98 QQD-IFFPELTLRQTLEVSIA 117 (121)
Q Consensus 98 Q~~-~l~~~ltv~e~l~~~~~ 117 (121)
|+. .+++..|+.|++.-..+
T Consensus 392 Q~~~~l~~~~t~~d~l~~~~~ 412 (530)
T COG0488 392 QHRDELDPDKTVLEELSEGFP 412 (530)
T ss_pred ehhhhcCccCcHHHHHHhhCc
Confidence 987 45577799999887654
No 359
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.75 E-value=2e-18 Score=131.73 Aligned_cols=65 Identities=42% Similarity=0.688 Sum_probs=58.8
Q ss_pred EECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 52 VMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 52 liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|+||||||||||+|+|+|+++|++|+|.++|+++.. ..++.++|++|++.+|+++|++||+.++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 67 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGL 67 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHH
Confidence 689999999999999999999999999999998753 34568999999999999999999999864
No 360
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=4.8e-18 Score=149.91 Aligned_cols=76 Identities=34% Similarity=0.519 Sum_probs=68.9
Q ss_pred cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHH
Q psy16345 31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQ 110 (121)
Q Consensus 31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 110 (121)
++++++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ++++|++|++.+++ .|++|
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 345679999999999999999999999999999999999999999999863 47999999998875 59999
Q ss_pred HHhhcc
Q psy16345 111 TLEVSI 116 (121)
Q Consensus 111 ~l~~~~ 116 (121)
|+.++.
T Consensus 740 nI~~~~ 745 (1560)
T PTZ00243 740 NILFFD 745 (1560)
T ss_pred HHHcCC
Confidence 999865
No 361
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=3.8e-19 Score=132.10 Aligned_cols=78 Identities=28% Similarity=0.447 Sum_probs=63.6
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEe-eCCCCCCCCCHHH
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVL-QQDIFFPELTLRQ 110 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~-Q~~~l~~~ltv~e 110 (121)
.+++|+||+|++|++++++|+|||||||+||+|+|++.|++|.|.++|...-+ +.-+++++|+ |...+++.+.+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 58999999999999999999999999999999999999999999999987532 3455677666 4445555555555
Q ss_pred HH
Q psy16345 111 TL 112 (121)
Q Consensus 111 ~l 112 (121)
.+
T Consensus 118 s~ 119 (325)
T COG4586 118 SL 119 (325)
T ss_pred hH
Confidence 43
No 362
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=1.1e-18 Score=142.24 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=70.3
Q ss_pred eeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE-----------ECCEeCCh---h-
Q psy16345 25 SGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-----------LNKERLNK---R- 88 (121)
Q Consensus 25 ~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~-----------~~g~~~~~---~- 88 (121)
++++++|+. ..+|++++ .+++|+++||+||||||||||+|+|+|+++|+.|+|. ++|.++.. .
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 448999986 46999999 8999999999999999999999999999999999997 88887642 1
Q ss_pred --hcccEEEEeeCCCCCCC---CCHHHHHhh
Q psy16345 89 --WKRKICYVLQQDIFFPE---LTLRQTLEV 114 (121)
Q Consensus 89 --~~~~i~~v~Q~~~l~~~---ltv~e~l~~ 114 (121)
.+.++++.+|....++. .|++|++..
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~ 186 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKK 186 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHh
Confidence 12345666664433332 289998864
No 363
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.5e-18 Score=134.49 Aligned_cols=86 Identities=23% Similarity=0.376 Sum_probs=77.0
Q ss_pred EEEEeeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.|+++|+.|.|... .-+..||++|++||++-|+|.||||||||+++|.|+++|++|+|++||.+++. +.|+-++-
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 59999999999764 67999999999999999999999999999999999999999999999999972 56777888
Q ss_pred EeeCCCCCCCC
Q psy16345 96 VLQQDIFFPEL 106 (121)
Q Consensus 96 v~Q~~~l~~~l 106 (121)
||.|..+|+.+
T Consensus 402 vFsDyhLF~~l 412 (546)
T COG4615 402 VFSDYHLFDQL 412 (546)
T ss_pred HhhhHhhhHhh
Confidence 88888777653
No 364
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=6.3e-18 Score=119.34 Aligned_cols=81 Identities=35% Similarity=0.502 Sum_probs=70.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe---CC-----h-----
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER---LN-----K----- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~---~~-----~----- 87 (121)
.+++.++++.|+...-..+|||++.+||+.||+|+|||||||||+||++-+.|+.|+|.|..+. .. .
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999986432 11 1
Q ss_pred hhcccEEEEeeCCC
Q psy16345 88 RWKRKICYVLQQDI 101 (121)
Q Consensus 88 ~~~~~i~~v~Q~~~ 101 (121)
.+|..-|+|.|+|.
T Consensus 86 L~RTeWG~VhQnP~ 99 (258)
T COG4107 86 LLRTEWGFVHQNPR 99 (258)
T ss_pred HhhhccceeecCcc
Confidence 23456799999874
No 365
>KOG0054|consensus
Probab=99.72 E-value=4.3e-17 Score=141.08 Aligned_cols=90 Identities=31% Similarity=0.467 Sum_probs=81.8
Q ss_pred ccEEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEE
Q psy16345 19 PLELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICY 95 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~ 95 (121)
...++++|.++.++. .+.|+||||+|++|+.+||+|+-|||||+||.+|.|.++..+|++.++| .++|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---------siaY 586 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---------SVAY 586 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---------eEEE
Confidence 345999999999854 3489999999999999999999999999999999999999999999987 4899
Q ss_pred EeeCCCCCCCCCHHHHHhhcccC
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
|+|+|-++.. ||+||+.||.+-
T Consensus 587 v~Q~pWI~ng-TvreNILFG~~~ 608 (1381)
T KOG0054|consen 587 VPQQPWIQNG-TVRENILFGSPY 608 (1381)
T ss_pred eccccHhhCC-cHHHhhhcCccc
Confidence 9999999876 999999999863
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=3e-17 Score=136.26 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=58.6
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC---CCCccEEEECCEe
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV---KLDSGVIRLNKER 84 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~---~~~~G~i~~~g~~ 84 (121)
..+|+++|+++.|+++++|+++||+|.+|+++||||+||||||||||+|+|.. .|.+|+|.+.++.
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 34699999999999888999999999999999999999999999999999864 5778999765443
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.5e-17 Score=116.93 Aligned_cols=95 Identities=32% Similarity=0.427 Sum_probs=77.1
Q ss_pred cEEEEeeeEEEcC-----C--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe--CC----
Q psy16345 20 LELVFSGLSVTLD-----K--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER--LN---- 86 (121)
Q Consensus 20 ~~i~~~~l~~~~~-----~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~--~~---- 86 (121)
..+.++|++++|- + -++++++||+++.||+++|=||||+|||||||+|.+.+.|++|+|++.-.. ++
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 3588899988872 2 368999999999999999999999999999999999999999999986432 11
Q ss_pred --h----hhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 87 --K----RWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 87 --~----~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
+ .+++-+|||.|.....|..+..|.++.
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae 116 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE 116 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence 1 245669999998777777776666553
No 368
>KOG0065|consensus
Probab=99.67 E-value=8.3e-17 Score=137.90 Aligned_cols=95 Identities=43% Similarity=0.617 Sum_probs=82.4
Q ss_pred EEEeeeEEEc----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--CCccEEEECCEeCC-hhhcccEE
Q psy16345 22 LVFSGLSVTL----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIRLNKERLN-KRWKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~-~~~~~~i~ 94 (121)
..++|+.+.. +.+++|+||+--++||..+||+|+|||||||||++|+|-.. ..+|+|.++|.+.+ ...+|.+|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G 867 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG 867 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence 4455555554 45789999999999999999999999999999999999643 46899999999998 57889999
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
||-|++...+.+||+|-|.|++
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA 889 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSA 889 (1391)
T ss_pred eeecccccCcccchHHHHHHHH
Confidence 9999988779999999999876
No 369
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.67 E-value=1.2e-16 Score=112.78 Aligned_cols=60 Identities=30% Similarity=0.269 Sum_probs=50.0
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
+++|+++||++++|++++|+||||||||||||+|.+ ++|++.+++.. ....+..++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~~~~~~~~~~~q 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PKFSRNKLIFIDQ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-cccccccEEEEhH
Confidence 578999999999999999999999999999999863 68999998763 2222345888887
No 370
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.65 E-value=3.5e-16 Score=121.71 Aligned_cols=95 Identities=28% Similarity=0.371 Sum_probs=80.0
Q ss_pred EEEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-----CccEEEECCEeCC----h
Q psy16345 21 ELVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-----DSGVIRLNKERLN----K 87 (121)
Q Consensus 21 ~i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-----~~G~i~~~g~~~~----~ 87 (121)
.++++|+++.|+ ...++++|||++++||.+||||+||||||-..+.++++++. -+|+|.|+|.++- +
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 489999999985 47899999999999999999999999999999999999864 3689999999873 1
Q ss_pred h----hcccEEEEeeCCC--CCCCCCHHHHHhhc
Q psy16345 88 R----WKRKICYVLQQDI--FFPELTLRQTLEVS 115 (121)
Q Consensus 88 ~----~~~~i~~v~Q~~~--l~~~ltv~e~l~~~ 115 (121)
+ +..+|+++||+|. |.|-.|+...+...
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~ 119 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHH
Confidence 2 3347999999985 77766877776643
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.59 E-value=7.9e-16 Score=108.73 Aligned_cols=92 Identities=28% Similarity=0.439 Sum_probs=75.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v 96 (121)
++++++++.. +-|-.+|.++..||++-+||||||||||||-.++|+++ .+|+|.+.|.++. .++.++-+|+
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHH
Confidence 4677777653 35788999999999999999999999999999999974 5799999999986 2567778899
Q ss_pred eeCCCCCCCCCHHHHHhhccc
Q psy16345 97 LQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
.|+..-.+.|.|+.++.+.-+
T Consensus 78 sQqq~p~f~mpV~~YL~L~qP 98 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQP 98 (248)
T ss_pred hhccCCcchhhhhhhhhhcCc
Confidence 987654556788888877654
No 372
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.58 E-value=9.6e-15 Score=118.44 Aligned_cols=91 Identities=31% Similarity=0.436 Sum_probs=79.9
Q ss_pred cEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 20 LELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 20 ~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
..++++|++..-++ +..+++.+|++++|+.+-|.|+||||||||+|+|+|+.+..+|+|.+=. ...+-|+||
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-------~~~~lflpQ 463 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-------DSALLFLPQ 463 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-------CCceEEecC
Confidence 46999999998865 7899999999999999999999999999999999999999999987641 235899999
Q ss_pred CCCCCCCCCHHHHHhhcccC
Q psy16345 99 QDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~~~ 118 (121)
.|.+... |.+|.+.+....
T Consensus 464 ~PY~p~G-tLre~l~YP~~~ 482 (604)
T COG4178 464 RPYLPQG-TLREALCYPNAA 482 (604)
T ss_pred CCCCCCc-cHHHHHhCCCCC
Confidence 9988766 999999987653
No 373
>KOG0060|consensus
Probab=99.53 E-value=7.3e-14 Score=112.25 Aligned_cols=95 Identities=24% Similarity=0.387 Sum_probs=78.9
Q ss_pred CccEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEE
Q psy16345 18 RPLELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICY 95 (121)
Q Consensus 18 ~~~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~ 95 (121)
++..|++++++..-.. ..+++++||+|+.|+.+-|.||||||||+|||+++|+++...|.+..-.+.- -+.+-|
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----~~~lff 505 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----PKDLFF 505 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC----CCceEE
Confidence 3457999999998754 5678889999999999999999999999999999999999999987543221 134899
Q ss_pred EeeCCCCCCCCCHHHHHhhccc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|||.|.+.-. |.+|.+.+...
T Consensus 506 lPQrPYmt~G-TLRdQvIYP~~ 526 (659)
T KOG0060|consen 506 LPQRPYMTLG-TLRDQVIYPLK 526 (659)
T ss_pred ecCCCCcccc-chhheeeccCc
Confidence 9999976655 99999998753
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.53 E-value=6.9e-15 Score=105.21 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=52.2
Q ss_pred EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---------cEEEECCEeCCh-hhcccEEEEeeCCCCC
Q psy16345 38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---------GVIRLNKERLNK-RWKRKICYVLQQDIFF 103 (121)
Q Consensus 38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---------G~i~~~g~~~~~-~~~~~i~~v~Q~~~l~ 103 (121)
+++++++.+| +++|+||||||||||+++|++++++.. |++.+.|.+... ..+++++||||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc
Confidence 6789999999 999999999999999999999976552 456666665432 3356799999998754
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.46 E-value=5.9e-14 Score=102.47 Aligned_cols=85 Identities=16% Similarity=0.347 Sum_probs=59.8
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH----------------cCCCCCcc--------E
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA----------------GRVKLDSG--------V 77 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~----------------gl~~~~~G--------~ 77 (121)
|+++|.. .|+++.++.+++ |++++|+||||||||||+++|+ +++.+.+| +
T Consensus 4 i~~~nfk-sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGFK-SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCcc-CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 5566654 577778888886 7899999999999999999998 44455555 6
Q ss_pred EEECCEe----CC---hhhcccEEEEeeCCCCCC-CCCHHHHH
Q psy16345 78 IRLNKER----LN---KRWKRKICYVLQQDIFFP-ELTLRQTL 112 (121)
Q Consensus 78 i~~~g~~----~~---~~~~~~i~~v~Q~~~l~~-~ltv~e~l 112 (121)
+.+++.+ +. ...++.+++++|+..+++ ..|..|..
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~ 120 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVM 120 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHH
Confidence 6665532 11 134567899998877766 34655543
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.46 E-value=4.1e-15 Score=107.50 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=55.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
.|+++|+. .|++..+++++++ ++++|+||||||||||+++|.-. .|.+.....++++++++|+.
T Consensus 5 ~l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G~~~~~~~~~~i~~~~~~~ 68 (212)
T cd03274 5 KLVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FGFRASKMRQKKLSDLIHNS 68 (212)
T ss_pred EEEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hccCHHHhhhhhHHHHhcCC
Confidence 36778877 7888889999987 89999999999999999999722 22222112224577777776
Q ss_pred CCCCCCCHHHHHhh
Q psy16345 101 IFFPELTLRQTLEV 114 (121)
Q Consensus 101 ~l~~~ltv~e~l~~ 114 (121)
.+++.+++++++.+
T Consensus 69 ~~~~~~~~~~~~~~ 82 (212)
T cd03274 69 AGHPNLDSCSVEVH 82 (212)
T ss_pred CCCCCCceEEEEEE
Confidence 66666666665443
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=103.42 Aligned_cols=99 Identities=28% Similarity=0.408 Sum_probs=86.3
Q ss_pred ccEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC-C-----hhhcc
Q psy16345 19 PLELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-N-----KRWKR 91 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~-~-----~~~~~ 91 (121)
...+++++|+..-.. ...+++|||++++||++||.|=.|-|-+.|+.+|+|+.++.+|+|.++|+++ . ...+.
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 456999999987654 5789999999999999999999999999999999999988889999999996 2 23456
Q ss_pred cEEEEeeCC---CCCCCCCHHHHHhhccc
Q psy16345 92 KICYVLQQD---IFFPELTLRQTLEVSIA 117 (121)
Q Consensus 92 ~i~~v~Q~~---~l~~~ltv~e~l~~~~~ 117 (121)
.++|||.|. .+.+.+|+.||+.+...
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~ 363 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRH 363 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhc
Confidence 799999986 47889999999988654
No 378
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.44 E-value=1e-13 Score=110.17 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=52.4
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEEECCEeCCh---hhcccEEEEeeCC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNKERLNK---RWKRKICYVLQQD 100 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~---~~~~~i~~v~Q~~ 100 (121)
.++|++||+++++||+++|+|||||||||||| +|+..|++| +|.++|.++.. .....+-+|+|+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhh
Confidence 36899999999999999999999999999999 778888888 79999999852 1111111788864
No 379
>KOG0064|consensus
Probab=99.40 E-value=4.4e-13 Score=107.27 Aligned_cols=88 Identities=23% Similarity=0.433 Sum_probs=70.0
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.|.++|+-.--. ...++..++|+|++|-.+-|+||||||||+|+|+|.|+++...|...+= ...++.|+||.
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P-------~~~~mFYIPQR 553 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-------RPNNIFYIPQR 553 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC-------CCcceEeccCC
Confidence 377888766543 4678999999999999999999999999999999999999877766542 23469999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
|.+- .-|.+|.+.+..
T Consensus 554 PYms-~gtlRDQIIYPd 569 (728)
T KOG0064|consen 554 PYMS-GGTLRDQIIYPD 569 (728)
T ss_pred CccC-cCcccceeecCC
Confidence 8764 337777766554
No 380
>KOG2355|consensus
Probab=99.39 E-value=1.2e-12 Score=94.71 Aligned_cols=67 Identities=28% Similarity=0.456 Sum_probs=59.8
Q ss_pred ccEEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 19 PLELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
...|++.++.|.|.. .+++-|+|++++.|....++|.||||||||||+|+|-.-...|.|.+.|++.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrsa 78 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSA 78 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCc
Confidence 346999999999954 6999999999999999999999999999999999997666668999888764
No 381
>KOG0927|consensus
Probab=99.36 E-value=4e-13 Score=107.39 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=68.3
Q ss_pred EEEEeeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 21 ELVFSGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 21 ~i~~~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+.+.|++|.|.+. .++++++|-|..++.+++|||||||||||||+++|.+.|..|.+.-.-. .++++.-|+
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-------~~~~~y~Qh 461 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-------NKLPRYNQH 461 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-------ccchhhhhh
Confidence 48899999999765 7999999999999999999999999999999999999999999875432 234444443
Q ss_pred CC--CCCCCCHHHHHhhc
Q psy16345 100 DI--FFPELTLRQTLEVS 115 (121)
Q Consensus 100 ~~--l~~~ltv~e~l~~~ 115 (121)
.. +.-+.+..|++.-.
T Consensus 462 ~~e~ldl~~s~le~~~~~ 479 (614)
T KOG0927|consen 462 LAEQLDLDKSSLEFMMPK 479 (614)
T ss_pred hHhhcCcchhHHHHHHHh
Confidence 22 33344566665543
No 382
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.34 E-value=1.6e-13 Score=98.44 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=53.3
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l 112 (121)
++.+++|++|+. |++++|+||||||||||+|+|++... +...|.++.. ..+++|...+|+.+|+.||+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----CccCcccceEEEeccchhcc
Confidence 356778887765 79999999999999999999988542 1123444321 13667766788899999999
Q ss_pred hhccc
Q psy16345 113 EVSIA 117 (121)
Q Consensus 113 ~~~~~ 117 (121)
.++..
T Consensus 81 ~~~~s 85 (199)
T cd03283 81 RDGIS 85 (199)
T ss_pred ccccC
Confidence 87653
No 383
>KOG0066|consensus
Probab=99.32 E-value=1.9e-12 Score=102.37 Aligned_cols=87 Identities=25% Similarity=0.397 Sum_probs=72.9
Q ss_pred cEEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 20 LELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 20 ~~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
..+-+.+|+|.| +.+++++.++|-|.-...+|||||||.||||||++|.|-+.|.+|+.+-+ .+-+|||..|
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-------hrL~iG~FdQ 657 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-------HRLRIGWFDQ 657 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-------ceeeeechhh
Confidence 348889999999 66899999999999999999999999999999999999999999987654 3457999988
Q ss_pred CCC--CCCCCCHHHHHh
Q psy16345 99 QDI--FFPELTLRQTLE 113 (121)
Q Consensus 99 ~~~--l~~~ltv~e~l~ 113 (121)
+.. |...-|..|.+.
T Consensus 658 h~~E~L~~Eetp~EyLq 674 (807)
T KOG0066|consen 658 HANEALNGEETPVEYLQ 674 (807)
T ss_pred hhHHhhccccCHHHHHH
Confidence 753 444456666654
No 384
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.32 E-value=3.3e-13 Score=99.40 Aligned_cols=88 Identities=17% Similarity=0.364 Sum_probs=59.2
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCE-eCCh------hhcccE
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKE-RLNK------RWKRKI 93 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~-~~~~------~~~~~i 93 (121)
+.++|. +.|.+..++.+ +. ..+++|+||||||||||+++|++++.+. .|++++.+. ++.. ....++
T Consensus 6 ~~~~~f-~~~~~~~~~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISG----FD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 555665 45544333322 22 5699999999999999999999998876 457777665 3211 124479
Q ss_pred EEEeeCC---------CCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQD---------IFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~---------~l~~~ltv~e~l~~~ 115 (121)
.+++|++ .+.+.+||.+++..+
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~ 110 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLG 110 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcC
Confidence 9999985 344567777766543
No 385
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.32 E-value=7.4e-12 Score=100.00 Aligned_cols=93 Identities=27% Similarity=0.370 Sum_probs=81.4
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccE
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKI 93 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i 93 (121)
...+++++++..- .++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++. +..+..+
T Consensus 261 ~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 261 EPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred CcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 3458888887532 689999999999999999999999999999999999999999999999885 2456789
Q ss_pred EEEeeCC---CCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQD---IFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~---~l~~~ltv~e~l~~~ 115 (121)
+||+.|. .++..+++.+|+.+.
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~ 361 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLA 361 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehH
Confidence 9999875 588899999999876
No 386
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.27 E-value=2.2e-11 Score=86.11 Aligned_cols=80 Identities=21% Similarity=0.210 Sum_probs=59.6
Q ss_pred EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEeeCCC--CCCCCCHHHHHhh
Q psy16345 38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQQDI--FFPELTLRQTLEV 114 (121)
Q Consensus 38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~~~--l~~~ltv~e~l~~ 114 (121)
+=+.+.+++|+.++|+||||||||||+++|+++++++.|.+.+.+..-.. ..+..++++.|... ..+..+..+.+..
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH
Confidence 33456788999999999999999999999999999999999987643211 12344667666543 3556788888876
Q ss_pred ccc
Q psy16345 115 SIA 117 (121)
Q Consensus 115 ~~~ 117 (121)
.+.
T Consensus 96 ~lR 98 (186)
T cd01130 96 ALR 98 (186)
T ss_pred Hhc
Confidence 553
No 387
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.27 E-value=1.8e-12 Score=93.17 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=53.4
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHH----cCCCCCccEEEECCEeCC-hhhcccEEEEeeCC-----CCCCCCCHHH
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLA----GRVKLDSGVIRLNKERLN-KRWKRKICYVLQQD-----IFFPELTLRQ 110 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~----gl~~~~~G~i~~~g~~~~-~~~~~~i~~v~Q~~-----~l~~~ltv~e 110 (121)
++++.+| +++|+||||||||||+++|. |...+..|.+..+...+. ...+..+++++|++ .+...+++++
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 3556677 99999999999999999995 888887776652211122 23455799999987 3444568899
Q ss_pred HHhhc
Q psy16345 111 TLEVS 115 (121)
Q Consensus 111 ~l~~~ 115 (121)
|+.+.
T Consensus 96 ~~~~~ 100 (204)
T cd03240 96 NVIFC 100 (204)
T ss_pred ceeee
Confidence 88764
No 388
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.27 E-value=2.2e-11 Score=96.48 Aligned_cols=79 Identities=23% Similarity=0.327 Sum_probs=65.6
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC---EeCCh--------h
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK---ERLNK--------R 88 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g---~~~~~--------~ 88 (121)
.++.++++..|. +..+++.++ .+.+|++++|+|+||+|||||+++|+++.+|+.|.+.+.| +++.. .
T Consensus 139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~ 217 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADN 217 (450)
T ss_pred CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHh
Confidence 478899999995 467888885 9999999999999999999999999999999999888854 55431 2
Q ss_pred hcccEEEEeeCC
Q psy16345 89 WKRKICYVLQQD 100 (121)
Q Consensus 89 ~~~~i~~v~Q~~ 100 (121)
+++.++||+|..
T Consensus 218 r~rtI~vV~qsd 229 (450)
T PRK06002 218 LKKAVAVVATSD 229 (450)
T ss_pred hCCeEEEEEcCC
Confidence 346799999965
No 389
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.26 E-value=3.7e-12 Score=92.72 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=31.7
Q ss_pred EcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345 30 TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64 (121)
Q Consensus 30 ~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl 64 (121)
...+..+|+++||+|++||++||+|+||||||||+
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 34456799999999999999999999999999996
No 390
>KOG0927|consensus
Probab=99.25 E-value=1.2e-11 Score=99.06 Aligned_cols=56 Identities=29% Similarity=0.506 Sum_probs=52.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G 76 (121)
.+.+.++++.|.+..+++|++|++.+|+.+||+|+|||||||+|++|.|-..|..-
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~ 130 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE 130 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc
Confidence 48899999999999999999999999999999999999999999999998877543
No 391
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.24 E-value=8.7e-12 Score=98.52 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=64.7
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc---EEEECCEeCCh----------hhcccEEEEeeCC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG---VIRLNKERLNK----------RWKRKICYVLQQD 100 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G---~i~~~g~~~~~----------~~~~~i~~v~Q~~ 100 (121)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+++.+ .|-.+++++.. ..+..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4689999 99999999999999999999999999999888753 33334443321 1244689999998
Q ss_pred CCCCCCCHHHHHhhcc
Q psy16345 101 IFFPELTLRQTLEVSI 116 (121)
Q Consensus 101 ~l~~~ltv~e~l~~~~ 116 (121)
..+..+++.+++.+.+
T Consensus 222 s~~~rl~a~e~a~~iA 237 (434)
T PRK07196 222 SPLMRIKATELCHAIA 237 (434)
T ss_pred ChhhhHHHHHHHHHHH
Confidence 8888889988876543
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.21 E-value=1e-11 Score=92.90 Aligned_cols=63 Identities=22% Similarity=0.215 Sum_probs=52.4
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEEEEeeCCCCCCCCCHHHH
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKICYVLQQDIFFPELTLRQT 111 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~~v~Q~~~l~~~ltv~e~ 111 (121)
..++|+||||||||||+++|+|++.|.+|++.++|+++. .++...+++++|.. +...++|.+|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 578999999999999999999999999999999999884 24555678888864 4556676665
No 393
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.21 E-value=1.4e-11 Score=88.77 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=51.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEe-CCeEEEEECCCCchHHHHHHHHHc-CCCCCccEEEECC--EeCC-hhhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVK-PGELLAVMGPSGCGKTTLLNCLAG-RVKLDSGVIRLNK--ERLN-KRWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~-~G~~~~liG~nGsGKSTLl~~l~g-l~~~~~G~i~~~g--~~~~-~~~~~~i~~ 95 (121)
.|+++|+. .|.+. ++++|... +|++++|+|+||||||||+++|++ +..+..+...... ..+. ......+++
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 58888888 66544 56667644 589999999999999999999996 4334334333320 0111 134456889
Q ss_pred EeeCCC
Q psy16345 96 VLQQDI 101 (121)
Q Consensus 96 v~Q~~~ 101 (121)
++|+..
T Consensus 81 ~f~~~~ 86 (213)
T cd03279 81 TFQLGG 86 (213)
T ss_pred EEEECC
Confidence 998764
No 394
>KOG0062|consensus
Probab=99.20 E-value=1.4e-11 Score=98.23 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=47.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
..|.+.+++..||++.+|.+-++++..|..+||+|+||+|||||||+|+.
T Consensus 79 ~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred cceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 35888999999999999999999999999999999999999999999987
No 395
>KOG0065|consensus
Probab=99.19 E-value=1.8e-11 Score=105.71 Aligned_cols=84 Identities=48% Similarity=0.786 Sum_probs=73.8
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECCEeCChh-hcccEEEEeeCCCCCCCCCHH
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKERLNKR-WKRKICYVLQQDIFFPELTLR 109 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~~-~~~~i~~v~Q~~~l~~~ltv~ 109 (121)
..+++|+++-+++|+.+-++||.||||||||++|+|-++- ..|+|.++|.+.... .++.++|..|++..+|+|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3699999999999999999999999999999999997642 357999999998742 256799999999999999999
Q ss_pred HHHhhccc
Q psy16345 110 QTLEVSIA 117 (121)
Q Consensus 110 e~l~~~~~ 117 (121)
|.+.|.++
T Consensus 208 eTldFa~r 215 (1391)
T KOG0065|consen 208 ETLDFAAR 215 (1391)
T ss_pred ehhhHHHh
Confidence 99998764
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.17 E-value=3.4e-11 Score=87.67 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=69.9
Q ss_pred EEEeeeEEEcC----CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC----CccEEEECCEeCC----hh-
Q psy16345 22 LVFSGLSVTLD----KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL----DSGVIRLNKERLN----KR- 88 (121)
Q Consensus 22 i~~~~l~~~~~----~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~----~~G~i~~~g~~~~----~~- 88 (121)
+.++|++..+. .-.+++.+|+++.+||+-||+|+||||||-..|+|+|..+. +..+.+|++.++- ++
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 67788888773 34689999999999999999999999999999999998653 4556667776652 22
Q ss_pred ---hcccEEEEeeCCC--CCCCCCHHHHHh
Q psy16345 89 ---WKRKICYVLQQDI--FFPELTLRQTLE 113 (121)
Q Consensus 89 ---~~~~i~~v~Q~~~--l~~~ltv~e~l~ 113 (121)
..+.++++||+|. +.|.-++...+.
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlI 113 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLI 113 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence 2345889999985 556555554443
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=92.48 Aligned_cols=86 Identities=30% Similarity=0.390 Sum_probs=65.1
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
..+++.++++.|++ ..|.--.-+|..||+++++||||-||||+.++|+|.++|++|. .. .-+++|=||-
T Consensus 341 ~lv~y~~~~k~~g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~------~~~vSyKPQy 409 (591)
T COG1245 341 TLVEYPDLKKTYGD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE------DLKVSYKPQY 409 (591)
T ss_pred eeeecchheeecCc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc------cceEeeccee
Confidence 34677778888874 3455556678889999999999999999999999999999997 11 1357888885
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
-.-....||.+.+....
T Consensus 410 I~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 410 ISPDYDGTVEDLLRSAI 426 (591)
T ss_pred ecCCCCCcHHHHHHHhh
Confidence 44334568888776544
No 398
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.12 E-value=3.3e-11 Score=84.87 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hh-cccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RW-KRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~-~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++++|+|+||||||||+++|++++.+ +.++|.++.. .. +...++.+|+...++..++..++.+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 6899999999999999999999999876 5788877642 11 223566677655556667777776644
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.09 E-value=8.1e-11 Score=92.46 Aligned_cols=48 Identities=42% Similarity=0.731 Sum_probs=42.7
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--------CCCCccEEEEC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--------VKLDSGVIRLN 81 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--------~~~~~G~i~~~ 81 (121)
+.+++|+||++++|++++|+|+|||||||+||+|+|. ++|++|.+.+-
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 4689999999999999999999999999999999986 35788887653
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.02 E-value=5e-10 Score=80.00 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=34.6
Q ss_pred ceEEeeEEEEeCCe-EEEEECCCCchHHHHHHHHH--------cCCCCCc
Q psy16345 35 PILKDVSGVVKPGE-LLAVMGPSGCGKTTLLNCLA--------GRVKLDS 75 (121)
Q Consensus 35 ~~l~~vsl~i~~G~-~~~liG~nGsGKSTLl~~l~--------gl~~~~~ 75 (121)
..+.++||++.+|+ +++|+||||||||||||+|+ |..-|..
T Consensus 15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~ 64 (200)
T cd03280 15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA 64 (200)
T ss_pred CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc
Confidence 34568999999995 89999999999999999999 7655544
No 401
>PRK08149 ATP synthase SpaL; Validated
Probab=99.00 E-value=1.2e-09 Score=86.31 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=56.6
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---cEEEECCEeCCh--------hhcccEEEEeeCC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---GVIRLNKERLNK--------RWKRKICYVLQQD 100 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~--------~~~~~i~~v~Q~~ 100 (121)
+..+++++ +.+.+|++++|+|+||+|||||+++|+++..++. |.|...++++.. ...+++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45789999 9999999999999999999999999999988876 888888888742 1235788888754
No 402
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.99 E-value=6.1e-10 Score=81.10 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=48.4
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE----EEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV----IRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~----i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
-.+..++||.|+||||||||+++|++++++..|. +.+++........+..+++.+.. ....+++.+.+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~ 103 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAAL 103 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHH
Confidence 3567899999999999999999999999998898 55555433333334457766532 2334455554443
No 403
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.99 E-value=1.1e-09 Score=86.82 Aligned_cols=66 Identities=29% Similarity=0.351 Sum_probs=55.1
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC---C---------hhhcccEEEEeeC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---N---------KRWKRKICYVLQQ 99 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~---~---------~~~~~~i~~v~Q~ 99 (121)
+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|+.- . ..+++.+.++.+.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 34689999 99999999999999999999999999999999999998854432 2 1256678888764
No 404
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.97 E-value=6e-10 Score=83.05 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=30.9
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHH
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l 67 (121)
.-|++++++|+.|.+++|.|.||||||||++.+
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 459999999999999999999999999999866
No 405
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.97 E-value=5.9e-10 Score=80.84 Aligned_cols=74 Identities=20% Similarity=0.156 Sum_probs=52.1
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l 112 (121)
.+.+.+|++++..+ ++++|+||||+|||||||+++++.-. +. .|..+. .....++++.| +++.+++.+++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp-~~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP-ASKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec-cccceecceee---EeccCCchhhh
Confidence 45689999999887 99999999999999999999874321 11 111221 12345677755 46778888888
Q ss_pred hhcc
Q psy16345 113 EVSI 116 (121)
Q Consensus 113 ~~~~ 116 (121)
..+.
T Consensus 87 s~g~ 90 (216)
T cd03284 87 AGGR 90 (216)
T ss_pred ccCc
Confidence 7654
No 406
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.96 E-value=6.5e-10 Score=89.51 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=57.1
Q ss_pred EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
+.|++..|+.+.+++.+++.+..|+.++|+|+||+|||||++.|.|+++|.+|++.+....+
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 45889999988999999999999999999999999999999999999999999988876554
No 407
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.95 E-value=1e-09 Score=77.46 Aligned_cols=50 Identities=30% Similarity=0.493 Sum_probs=39.3
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEeeC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQ 99 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q~ 99 (121)
|++++|+||||||||||+|+|++...+ .+.+.+..+.+ .....+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998765 57777766643 223457777776
No 408
>PRK01889 GTPase RsgA; Reviewed
Probab=98.94 E-value=1.3e-09 Score=84.43 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=57.2
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-hhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-KRWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
++.+.-.+++|++++|+|+||+|||||++.|+|...+..|+|.+++.... ....+.+.+++|...++. .+...++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D-tpG~~~~~l 262 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLID-TPGMRELQL 262 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecC-CCchhhhcc
Confidence 44445556789999999999999999999999999999999998764432 233457888888765553 244444443
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.94 E-value=1.1e-09 Score=78.89 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=35.1
Q ss_pred CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.++.+.+|++|++.+|++++|+||||+||||++|++++
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35679999999999999999999999999999999984
No 410
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.93 E-value=2.8e-10 Score=81.59 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=42.4
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCCh---hhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLNK---RWKRKICYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~ltv~e~l 112 (121)
++|++++|+|+||||||||++.|++++++ ..+.+..++.-... ......++.+|.+..+....+.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 75 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHL 75 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHH
Confidence 68999999999999999999999998765 22333333321111 1233456667765544332334443
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.91 E-value=1.4e-09 Score=83.23 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----------hhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----------RWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----------~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
.+|++++|+||||+||||++..|++.+.+..++|.+-+.+..+ ..+..+.+++|.....|..++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999988888899887766421 224568899987655565567777665
Q ss_pred cc
Q psy16345 115 SI 116 (121)
Q Consensus 115 ~~ 116 (121)
..
T Consensus 192 ~~ 193 (318)
T PRK10416 192 AK 193 (318)
T ss_pred HH
Confidence 43
No 412
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.89 E-value=1.7e-09 Score=81.81 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=47.3
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC--CCccEEEECCEe---CChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIRLNKER---LNKRWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~---~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
+.-.++||.|+||||||||+++|.+++. +.+|.+.+-+.+ .....++..+++ |...+...+++.+.+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKF 133 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHH
Confidence 3447999999999999999999999887 677887654333 333333334543 65556666677666554
No 413
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.88 E-value=2.6e-09 Score=84.54 Aligned_cols=62 Identities=27% Similarity=0.391 Sum_probs=53.9
Q ss_pred EEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 22 LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 22 i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
++.+.++..+ .+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.+.+.|..
T Consensus 130 ~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 130 MVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred eeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 6667777777 356899999 9999999999999999999999999999999999887776654
No 414
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.86 E-value=1.7e-09 Score=64.07 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=30.6
Q ss_pred EEeeEEEEeC-CeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345 37 LKDVSGVVKP-GELLAVMGPSGCGKTTLLNCLAGRVKLDS 75 (121)
Q Consensus 37 l~~vsl~i~~-G~~~~liG~nGsGKSTLl~~l~gl~~~~~ 75 (121)
+++.++++.+ |.++.|.|+||||||||+.+|.=++.+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4455667764 56999999999999999999987665543
No 415
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.85 E-value=5.3e-09 Score=80.21 Aligned_cols=55 Identities=31% Similarity=0.369 Sum_probs=46.9
Q ss_pred EEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345 28 SVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83 (121)
Q Consensus 28 ~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 83 (121)
+..+. +..+++.+ +.+.+|++++|+|+||+|||||+++|+++..++.|.+..-|.
T Consensus 50 ~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 50 DEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred eeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 33443 35789999 999999999999999999999999999999998887776553
No 416
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.85 E-value=6.2e-09 Score=81.71 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=47.3
Q ss_pred EEEEeeeEEEcCC-cceEE-----------eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 21 ELVFSGLSVTLDK-RPILK-----------DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~-----------~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.++++||++.|.+ +.+|+ |+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 5999999999965 56786 9999999999999999999999999999998754
No 417
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.85 E-value=3.4e-09 Score=75.76 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=28.2
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
+-..++++.+|++++|+||||||||||||+|++
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 344566667899999999999999999999993
No 418
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.85 E-value=6.5e-09 Score=82.23 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=56.6
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe---CCh---h----hcccEEEEeeCCCC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER---LNK---R----WKRKICYVLQQDIF 102 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~---~~~---~----~~~~i~~v~Q~~~l 102 (121)
+..+++++ |.+.+|++++|+|+||+|||||+++|+++..++.|.+.+.|.. +.. . -....+++++....
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~ 210 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD 210 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEecccc
Confidence 45689999 9999999999999999999999999999999999888775443 321 1 12235677777665
Q ss_pred CCCC
Q psy16345 103 FPEL 106 (121)
Q Consensus 103 ~~~l 106 (121)
+|.+
T Consensus 211 ~p~~ 214 (422)
T TIGR02546 211 RPSL 214 (422)
T ss_pred CCHH
Confidence 6554
No 419
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.84 E-value=1.4e-08 Score=70.84 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=43.4
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE-----------CCEeCC---h-h-----hcccEEEEeeCCCCCCCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL-----------NKERLN---K-R-----WKRKICYVLQQDIFFPEL 106 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~-----------~g~~~~---~-~-----~~~~i~~v~Q~~~l~~~l 106 (121)
|++++|+||||||||||++.|+..+.+. |.+.+ +|.++. . . ..+.+..++|...++...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 5789999999999999999999987543 54544 333331 1 1 134588889987766665
Q ss_pred CHH
Q psy16345 107 TLR 109 (121)
Q Consensus 107 tv~ 109 (121)
++.
T Consensus 80 ~~~ 82 (179)
T TIGR02322 80 PAE 82 (179)
T ss_pred hHH
Confidence 654
No 420
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.83 E-value=3.9e-09 Score=76.98 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=40.8
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc-CCCCCccEEEE
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG-RVKLDSGVIRL 80 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g-l~~~~~G~i~~ 80 (121)
.+.+.++++|++.+|++++|+||||+||||++|++++ .+.+..|....
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3578999999999999999999999999999999999 44555665443
No 421
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.82 E-value=4.9e-09 Score=77.14 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=38.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEEC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~ 81 (121)
.++++|+ +.|.+...+ .+.+ .+++|+||||||||||+.+|++++.+..|+++..
T Consensus 3 ~i~l~nf-~~~~~~~~~-----~~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~ 56 (247)
T cd03275 3 RLELENF-KSYKGRHVI-----GPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK 56 (247)
T ss_pred EEEEECc-cccCCCeee-----cCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence 3667776 456443323 2233 4999999999999999999999887766766543
No 422
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.81 E-value=7.4e-09 Score=82.27 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=52.9
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---cEEEECCEeCCh-------hhcccEEEEeeCCC
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---GVIRLNKERLNK-------RWKRKICYVLQQDI 101 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~-------~~~~~i~~v~Q~~~ 101 (121)
+++.+ |.+.+|++++|+|+||+|||||+++|+++.+++. |.|.+.++++.. .-.+..++|+|...
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 44444 9999999999999999999999999999999875 889999988752 12345788888653
No 423
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.81 E-value=3.4e-09 Score=75.58 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=44.0
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
.+|.+++|+|+||||||||.+.|.+.+.+. .|.+.+++.++.+.+...++|.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccH
Confidence 678999999999999999999999976543 46899998877544444567777764
No 424
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.80 E-value=4.3e-09 Score=74.90 Aligned_cols=28 Identities=43% Similarity=0.720 Sum_probs=26.2
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 425
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.78 E-value=1e-08 Score=81.47 Aligned_cols=52 Identities=29% Similarity=0.438 Sum_probs=47.1
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
+..+++++ +.+.+|++++|+|+||+|||||+++|+++..++.|.+.+.|+.-
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 45689999 99999999999999999999999999999999999888877543
No 426
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.77 E-value=6.9e-09 Score=92.89 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=46.1
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK 82 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g 82 (121)
+...++++.+.....|++++|+|++|++++|+|+||||||||++.+ ++. .|++.|..
T Consensus 936 l~~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~e 992 (1809)
T PRK00635 936 PVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYAE 992 (1809)
T ss_pred cccceEEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeeec
Confidence 4456777777655679999999999999999999999999988766 332 78887653
No 427
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.77 E-value=4.8e-09 Score=84.09 Aligned_cols=63 Identities=27% Similarity=0.486 Sum_probs=46.1
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
++++.++.+.+|.+++|+||||+||||++..|++.+....|. .+++++.+|+ ...++.|++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-------------~kV~LI~~Dt---~RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-------------SKVALLTTDS---YRIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-------------CeEEEEeCCc---cchhHHHHHHH
Confidence 456677778899999999999999999999999876554442 1456666664 23456666654
No 428
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.76 E-value=1.6e-08 Score=79.81 Aligned_cols=52 Identities=35% Similarity=0.378 Sum_probs=45.8
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
..++ |.+|.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|...+
T Consensus 128 i~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ 179 (418)
T TIGR03498 128 VRVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR 179 (418)
T ss_pred cEEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence 3455 479999999999999999999999999999999999999888877543
No 429
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.75 E-value=8.6e-09 Score=84.26 Aligned_cols=63 Identities=24% Similarity=0.219 Sum_probs=50.5
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
-++||.|+||||||||++.|++++ +..|.|.++|.... .+.+.+.+|++.++...++.+++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~---~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS---SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc---hhhhCccCCChhhcchhHHHHHHHH
Confidence 589999999999999999999987 56789999987532 2235678888877776788888754
No 430
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.73 E-value=1.6e-08 Score=80.39 Aligned_cols=50 Identities=32% Similarity=0.432 Sum_probs=44.7
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
..+++.+ |.+.+|++++|+|+||+|||||+++|+++.+++.|.+...|..
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 5689999 9999999999999999999999999999999988877665544
No 431
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.72 E-value=2.8e-08 Score=78.45 Aligned_cols=52 Identities=31% Similarity=0.386 Sum_probs=47.2
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
+..+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.+.+.|+..
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 35689999 99999999999999999999999999999999999888777654
No 432
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.72 E-value=1.1e-08 Score=74.43 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=26.2
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCC--CccEEEE
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRL 80 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~ 80 (121)
++||.|+||||||||++.|.+++.+ ..+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999998864 4455543
No 433
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.72 E-value=8e-09 Score=78.52 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=52.6
Q ss_pred eEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe-CChhhcccEEEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 40 VSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER-LNKRWKRKICYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 40 vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-~~~~~~~~i~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
+++.++.|+.++|+|++|||||||+++|++++++..+.+.+.+.. +.-.....+.++.+... -....+..+.+...+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh
Confidence 446788999999999999999999999999999988888876421 11111234555444321 123457777776554
No 434
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=2.9e-08 Score=72.29 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=33.7
Q ss_pred CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
+.+.+.+|+++++.++++++|.||||+|||||+|+++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 3457899999999999999999999999999999864
No 435
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.68 E-value=4.1e-08 Score=73.98 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=51.8
Q ss_pred eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCCh---hhc-ccEEEEeeCCCC---C-CCCC
Q psy16345 39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNK---RWK-RKICYVLQQDIF---F-PELT 107 (121)
Q Consensus 39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~---~~~-~~i~~v~Q~~~l---~-~~lt 107 (121)
.+...+. +++++++|+||+|||||++.|.|...+..|++.. .|+..+. ..+ ...+++.+.|.+ . ..++
T Consensus 154 ~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 232 (287)
T cd01854 154 ELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHID 232 (287)
T ss_pred HHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCC
Confidence 3333444 5899999999999999999999999998998875 2332221 112 236789998876 3 4567
Q ss_pred HHHHHh
Q psy16345 108 LRQTLE 113 (121)
Q Consensus 108 v~e~l~ 113 (121)
..+...
T Consensus 233 ~~~~~~ 238 (287)
T cd01854 233 PEELAH 238 (287)
T ss_pred HHHHHH
Confidence 666544
No 436
>PRK00098 GTPase RsgA; Reviewed
Probab=98.67 E-value=6.3e-08 Score=73.35 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=48.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCCh--hh--cccEEEEeeCCCCC----CCCCHHHH
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNK--RW--KRKICYVLQQDIFF----PELTLRQT 111 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~--~~--~~~i~~v~Q~~~l~----~~ltv~e~ 111 (121)
+|.+++++|+||+|||||++.|.|...+..|+|.. .|+..++ .+ ....+|+...|.+. ..++..+.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ 239 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEEL 239 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHH
Confidence 58999999999999999999999999888999886 3333322 11 22457888888765 34565443
No 437
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=2.3e-08 Score=85.40 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=36.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHH
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLN 65 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~ 65 (121)
.+++++++. ..|++++|+|++|++++|+|+||||||||++
T Consensus 612 ~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 478888873 3599999999999999999999999999997
No 438
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=7.6e-08 Score=84.95 Aligned_cols=73 Identities=19% Similarity=0.397 Sum_probs=47.5
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHH----HcCCCCC-ccEEEECCEeCCh--hhcc
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL----AGRVKLD-SGVIRLNKERLNK--RWKR 91 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l----~gl~~~~-~G~i~~~g~~~~~--~~~~ 91 (121)
.+.++++. +|+. +. -..|.| .+ .+++|+|||||||||++.+| .|..+|. .|.+.+.+..+.. ..+.
T Consensus 5 kl~i~g~r-Sf~~~~~~-~~~I~F--~~-~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a 79 (1311)
T TIGR00606 5 KMSILGVR-SFGIEDKD-KQIIDF--FS-PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRA 79 (1311)
T ss_pred eeeeecee-cCCCcccc-ceeeec--cc-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhh
Confidence 46777774 5542 11 122334 34 49999999999999999999 4988885 6887776654431 2334
Q ss_pred cEEEEee
Q psy16345 92 KICYVLQ 98 (121)
Q Consensus 92 ~i~~v~Q 98 (121)
.|.++|+
T Consensus 80 ~V~l~F~ 86 (1311)
T TIGR00606 80 QIRLQFR 86 (1311)
T ss_pred eeEEEEE
Confidence 4555554
No 439
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.66 E-value=2.7e-08 Score=79.00 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=40.2
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNK 82 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g 82 (121)
-.+++.+ |.+.+|+.++|+|+||+|||||+++|+++.+. +.|.|.+.|
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 3578887 99999999999999999999999999998844 446666644
No 440
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.65 E-value=5e-08 Score=76.97 Aligned_cols=60 Identities=28% Similarity=0.357 Sum_probs=49.0
Q ss_pred EeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 24 FSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 24 ~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
-+.++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|+++..++.+.+...|..
T Consensus 114 R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 114 RAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred ccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 344555554 35678888 9999999999999999999999999999999987776655554
No 441
>PLN02796 D-glycerate 3-kinase
Probab=98.65 E-value=5.6e-09 Score=80.49 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=44.0
Q ss_pred ceEEeeEEEE---eCCeE-----EEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCC
Q psy16345 35 PILKDVSGVV---KPGEL-----LAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLN 86 (121)
Q Consensus 35 ~~l~~vsl~i---~~G~~-----~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~ 86 (121)
.+++.+++.+ ++|+. +||+|++|||||||++.|.+++.+. .|.|.++|..+.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 5677888877 56776 9999999999999999999998764 588899988775
No 442
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.64 E-value=6.1e-08 Score=70.17 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=29.8
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--CCCCCccEEE
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIR 79 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~~~G~i~ 79 (121)
.+-+|++++=..+.+++|+||||+|||||||.++. ++ +..|.+.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v 62 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFV 62 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCee
Confidence 34455554422238999999999999999999983 33 3445444
No 443
>PRK05922 type III secretion system ATPase; Validated
Probab=98.63 E-value=6e-08 Score=76.89 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=42.4
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 83 (121)
-.+++.+ +.+.+|+.++|+|+||+|||||+++|++..+++.|.+..-|.
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe 193 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence 3456665 999999999999999999999999999999998888866554
No 444
>KOG0066|consensus
Probab=98.63 E-value=6.9e-08 Score=76.93 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=54.1
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--CCCCCccEEEECCEeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIRLNKERL 85 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~~~G~i~~~g~~~ 85 (121)
+.|.++|++.+..++.++.+.||.|-.|..+|||||||-|||||||-|+. +--|..=.+.+..+++
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv 330 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV 330 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence 45899999999989999999999999999999999999999999999975 2223344455555443
No 445
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=7.1e-08 Score=76.47 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=52.3
Q ss_pred EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
++-+.++..|.. ..+++.+ |.+.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer 193 (432)
T PRK06793 131 FEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER 193 (432)
T ss_pred hheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence 555667766653 4577774 9999999999999999999999999999999999998887655
No 446
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=4e-08 Score=78.18 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=42.2
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc---cEEEECCEeC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS---GVIRLNKERL 85 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~ 85 (121)
+..+++.+ |.+.+|++++|+|+||+|||||+++|+++..++- |.|-..+.++
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev 209 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREV 209 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhH
Confidence 35689999 9999999999999999999999999999887752 4444444443
No 447
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.62 E-value=7.5e-08 Score=85.52 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=41.4
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
+.+..|+|.+| +++|+|+|||||||+|++|++++.+..|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 55668888886 999999999999999999999999989999888654
No 448
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.61 E-value=7.6e-08 Score=77.73 Aligned_cols=52 Identities=27% Similarity=0.502 Sum_probs=43.8
Q ss_pred eEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH---cCCCCCccEEE
Q psy16345 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVIR 79 (121)
Q Consensus 27 l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i~ 79 (121)
+...+|+.++++|+.+.+ ++.+++|.|||||||||+.+.|+ |+...+.|.++
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y 319 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY 319 (512)
T ss_pred EEEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence 466778889999999987 88999999999999999999999 55455566654
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.59 E-value=2e-09 Score=75.20 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=28.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHH---cCCCCCccEEE
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVIR 79 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i~ 79 (121)
+..+++|+|++||||||+++.|+ |+..++.|++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~ 38 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL 38 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence 34689999999999999999999 87777777654
No 450
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.58 E-value=8.5e-08 Score=66.81 Aligned_cols=26 Identities=42% Similarity=0.708 Sum_probs=24.0
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 451
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.58 E-value=8.2e-09 Score=71.74 Aligned_cols=60 Identities=23% Similarity=0.178 Sum_probs=43.3
Q ss_pred ECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 53 MGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 53 iG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|+|||||||++++|++.+ |.+.+++..+.. ..+...++.+|+....+++++.+++.+..
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 63 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAM 63 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence 6999999999999999976 567777755421 12234578888766666778888877643
No 452
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.57 E-value=7e-08 Score=86.65 Aligned_cols=40 Identities=38% Similarity=0.501 Sum_probs=35.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHH
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLN 65 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~ 65 (121)
.+++++++. ..|+++||+|++|++++|+|+||||||||++
T Consensus 600 ~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 477777763 3799999999999999999999999999999
No 453
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=6.5e-08 Score=76.71 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=46.1
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
+..+++++ +.+.+|++++|+|+||+|||||+++|++...++.+.|...|..-
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg 195 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG 195 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence 35689999 99999999999999999999999999998888888888777654
No 454
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.57 E-value=1.4e-07 Score=73.28 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=39.9
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC--C-CccEEEECCEeCC---hhhcccEEEEeeCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK--L-DSGVIRLNKERLN---KRWKRKICYVLQQD 100 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~--~-~~G~i~~~g~~~~---~~~~~~i~~v~Q~~ 100 (121)
+++..+.|+||+||||||+|++|++.+. + ..+.|.....++. +..+...+++.|..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~ 193 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE 193 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee
Confidence 4889999999999999999999999874 2 2346665555543 12333457777753
No 455
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.56 E-value=3.9e-08 Score=79.27 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=50.0
Q ss_pred cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
+|...+.+.+++.+..|+.+.|+||||+|||||++.|.++++|.+|++.+....+
T Consensus 195 ~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i 249 (499)
T TIGR00368 195 KGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARI 249 (499)
T ss_pred cCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccc
Confidence 5677889999999999999999999999999999999999999999888876554
No 456
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=9.1e-08 Score=75.95 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=35.6
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~ 74 (121)
..+++.+ |.+.+|++++|+|+||+|||||+++|++...++
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 3467777 999999999999999999999999999987664
No 457
>KOG0062|consensus
Probab=98.54 E-value=6.2e-08 Score=77.72 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=65.6
Q ss_pred ccEEEEeeeEEEcCC-c-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEE
Q psy16345 19 PLELVFSGLSVTLDK-R-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~-~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v 96 (121)
+..+++.+++|.|.. . +++..+++++..-..++++|+||+||||++|++.+-+.|..|.+.+.+ |.+++|.
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-------r~ri~~f 432 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-------RLRIKYF 432 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-------cceecch
Confidence 346999999999954 4 599999999999999999999999999999999999999999887753 5578888
Q ss_pred eeCC
Q psy16345 97 LQQD 100 (121)
Q Consensus 97 ~Q~~ 100 (121)
+|..
T Consensus 433 ~Qhh 436 (582)
T KOG0062|consen 433 AQHH 436 (582)
T ss_pred hHhh
Confidence 8864
No 458
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.54 E-value=8.6e-08 Score=66.99 Aligned_cols=33 Identities=36% Similarity=0.650 Sum_probs=26.8
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++++++++.+| +++|+|+||+||||++.+|.-.
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~ 42 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYA 42 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 47788888775 9999999999999999988643
No 459
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.54 E-value=7.6e-08 Score=72.18 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=36.5
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEeeCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVLQQD 100 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~Q~~ 100 (121)
++||+|+||||||||++.|++++++..+.+...+ ++. +..+...++.++++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~r~~~g~~~~~p 54 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKGRKETGITALDP 54 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHHHHHhhcccccc
Confidence 5899999999999999999999988777655543 332 22233456666654
No 460
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.54 E-value=8.7e-08 Score=82.11 Aligned_cols=43 Identities=35% Similarity=0.410 Sum_probs=37.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
.+++++++. ..|+++||+|++|++++|+|.||||||||++.+.
T Consensus 614 ~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 478888862 3599999999999999999999999999998763
No 461
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.53 E-value=8e-08 Score=67.19 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=38.7
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--------CCCCCccEEEECCEeC
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--------RVKLDSGVIRLNKERL 85 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--------l~~~~~G~i~~~g~~~ 85 (121)
+|+++++..+++++ +|+|++|||||||++.+.+ ...+..+.+.+++.++
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~ 65 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF 65 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence 47778888777766 9999999999999999998 3445567777776543
No 462
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.51 E-value=1.7e-07 Score=67.12 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++.+++|.|+||||||||.+.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999987
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.50 E-value=3.8e-07 Score=65.19 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=34.9
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCChhhcccEEEEee
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
++.|.||+||||||+++.|++.+.+ ..|.|...+.++........+++.|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQ 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeee
Confidence 6889999999999999999887764 4577776655543212223355655
No 464
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.49 E-value=2.2e-07 Score=66.51 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=41.3
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-----hhhcccEEEEeeCCCCCC
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-----KRWKRKICYVLQQDIFFP 104 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-----~~~~~~i~~v~Q~~~l~~ 104 (121)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....+..+. ......+.+++|...+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~ 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC
Confidence 46778888887 8899999999999999999754322211 011122111 112345788888765544
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.49 E-value=7.5e-08 Score=68.32 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.7
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
++||+|+||||||||+++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 466
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.49 E-value=2.1e-07 Score=73.89 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=37.8
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS 75 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~ 75 (121)
..+++++ +.+.+|++++|+|+||+|||||+++|++...++-
T Consensus 150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 4589999 9999999999999999999999999999987753
No 467
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.47 E-value=2.9e-07 Score=63.14 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=31.5
Q ss_pred eEEEEECCCCchHHHHHHHHHcC----CCCCcc----EEEECCEeC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR----VKLDSG----VIRLNKERL 85 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl----~~~~~G----~i~~~g~~~ 85 (121)
-.++|+|++|||||||++.|.+. ..|+.| .+.+++..+
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 45899999999999999999996 457778 777776654
No 468
>PRK06820 type III secretion system ATPase; Validated
Probab=98.46 E-value=3.4e-07 Score=72.81 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=39.8
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i 78 (121)
..+++.+ +.+.+|+.++|+|+||+|||||+++|++...++.+-+
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~ 194 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVL 194 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEE
Confidence 5789999 9999999999999999999999999999988876544
No 469
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.45 E-value=9.6e-08 Score=80.08 Aligned_cols=46 Identities=37% Similarity=0.597 Sum_probs=38.2
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc--EEEEC
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLN 81 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G--~i~~~ 81 (121)
++++.++.+++|++++|+||||+||||++..|++.+....| .|.+-
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~li 221 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALL 221 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEe
Confidence 56778888888999999999999999999999998755555 45443
No 470
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.44 E-value=1.7e-07 Score=67.20 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=35.0
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEEeeCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYVLQQD 100 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v~Q~~ 100 (121)
.++|+|++|||||||++.+.+.+.+..+-..+. .+.. ..+....++++|+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~ 57 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVIT-NDIYTQEDAEFLVKNSALPPER 57 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEe-CCcCChhHHHHHHHcCCCCcCc
Confidence 689999999999999999999887764533333 3321 23344556666654
No 471
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.43 E-value=1.1e-07 Score=66.33 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=32.8
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE-ECCEe
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR-LNKER 84 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~-~~g~~ 84 (121)
.+|++++|+|.+||||||+.+.|++.+.+..+.+. +++..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 47999999999999999999999998866555554 56544
No 472
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.42 E-value=3.8e-07 Score=66.38 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=35.6
Q ss_pred CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+.+.+-+|++|+.++|++++|.||||+||||++++++..
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 356789999999999999999999999999999999765
No 473
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.41 E-value=3.7e-07 Score=66.80 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=41.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHH-HHHHHcCCCCCccEEEECCE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTL-LNCLAGRVKLDSGVIRLNKE 83 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTL-l~~l~gl~~~~~G~i~~~g~ 83 (121)
.+.++++.+.+++. +++|+++.|+|+|||||||| +++++++.+.....+++...
T Consensus 7 ~~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 7 ELSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred EEEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 35566777666542 79999999999999999999 68888876665555666543
No 474
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.38 E-value=4.2e-07 Score=78.19 Aligned_cols=71 Identities=17% Similarity=0.369 Sum_probs=42.6
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHH---HHcCCCC------CccEEEECCEeCCh-hhcc
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC---LAGRVKL------DSGVIRLNKERLNK-RWKR 91 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~---l~gl~~~------~~G~i~~~g~~~~~-~~~~ 91 (121)
|+++|+. +|.+. +++.+.+ .+++|+|||||||||||.+ ++|...+ ..+++.+.|..... ....
T Consensus 5 l~~~nf~-s~~~~-----~~i~f~~-~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~ 77 (1179)
T TIGR02168 5 LELAGFK-SFADP-----TTINFDK-GITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLA 77 (1179)
T ss_pred EEEeCcc-ccCCC-----eeEEecC-CcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCee
Confidence 5555554 34322 2345555 4999999999999999965 5564432 23566666653221 1234
Q ss_pred cEEEEeeC
Q psy16345 92 KICYVLQQ 99 (121)
Q Consensus 92 ~i~~v~Q~ 99 (121)
.|.+++++
T Consensus 78 ~v~~~~~~ 85 (1179)
T TIGR02168 78 EVELVFDN 85 (1179)
T ss_pred EEEEEEec
Confidence 57777775
No 475
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.37 E-value=1.8e-07 Score=78.93 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=38.6
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCC-eEEEEECCCCchHHHHHHHHHcC-CCCCcc
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPG-ELLAVMGPSGCGKTTLLNCLAGR-VKLDSG 76 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G-~~~~liG~nGsGKSTLl~~l~gl-~~~~~G 76 (121)
+.++++.+.+-...-.-.+++++..+ ++++|+||||+|||||||+|++. +.+..|
T Consensus 296 i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 296 IILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred EEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 66666554331111133478888877 99999999999999999999987 333334
No 476
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.36 E-value=1.1e-06 Score=56.83 Aligned_cols=38 Identities=45% Similarity=0.782 Sum_probs=30.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCCCc-cEEEECCE
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKE 83 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~-G~i~~~g~ 83 (121)
.+..+.|+||+|+||||+++.|+..+.... +-+.++..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 367899999999999999999999876654 45566554
No 477
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.34 E-value=4.9e-07 Score=64.30 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=28.6
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCCCccEEEEC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~ 81 (121)
.++|+|+||+|||||++.|.|...+.+|.+..+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~ 35 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTG 35 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence 378999999999999999999887777776655
No 478
>PRK15494 era GTPase Era; Provisional
Probab=98.34 E-value=3.5e-07 Score=70.44 Aligned_cols=50 Identities=26% Similarity=0.316 Sum_probs=44.7
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCe-------EEEEECCCCchHHHHHHHHHcC
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGE-------LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~-------~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++.++++++|.. ...+..++++++.|+ .++|+|.+|+|||||++.|.|-
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 18 DTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred ccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 4778899988864 568999999999999 9999999999999999999875
No 479
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=3.4e-07 Score=72.46 Aligned_cols=27 Identities=44% Similarity=0.758 Sum_probs=24.9
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+.+|++++|+||||+||||+++.|++.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999999874
No 480
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.33 E-value=9.9e-07 Score=76.60 Aligned_cols=47 Identities=30% Similarity=0.448 Sum_probs=37.2
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEE---EeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGV---VKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~---i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
+..|.++|+.-..+.. .|+|+ +..+.+++|+|||||||||+|.+|+.
T Consensus 3 ~~~l~~~nf~s~~~~~----~idf~~~~l~~~~l~~I~G~tGaGKStildai~~ 52 (1047)
T PRK10246 3 ILSLRLKNLNSLKGEW----KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICL 52 (1047)
T ss_pred ceEEEeecceeEcCCc----eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3468888887443332 58888 44589999999999999999999985
No 481
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.33 E-value=5.6e-07 Score=62.77 Aligned_cols=34 Identities=35% Similarity=0.602 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~ 79 (121)
++++++++|+||+|||||++.|.+-.....|+|.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 4589999999999999999999997665556665
No 482
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.32 E-value=1.2e-06 Score=72.72 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=35.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCe-EEEEECCCCchHHHHHHHHH
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGE-LLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~-~~~liG~nGsGKSTLl~~l~ 68 (121)
.|.++|+...++. +.++|...+|+ ++.|+|+||+|||||+++|.
T Consensus 5 ~l~l~nf~~~~~~----~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~ 49 (650)
T TIGR03185 5 QLTLENFGPYRGR----QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred EEEEeceEEEcCC----ceeeeecCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4788888765553 46778877765 89999999999999999873
No 483
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.31 E-value=5.9e-07 Score=71.13 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=34.5
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLN 86 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~ 86 (121)
=++||.|++|||||||++.|.+++.+. .|.|.++|..+.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt 254 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT 254 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence 689999999999999999999988765 688899988775
No 484
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.31 E-value=1.7e-07 Score=65.84 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=34.2
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc-cEEEECCEeC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKERL 85 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~-G~i~~~g~~~ 85 (121)
...+|++++|.|++||||||+.+.|.+.+.... +.+.+++.++
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 347899999999999999999999999875322 2567777554
No 485
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.30 E-value=9.3e-07 Score=61.17 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=27.2
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
....++.+.++.++.|+|||||||||+++++...
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3445556666679999999999999999998544
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.30 E-value=2.6e-06 Score=65.75 Aligned_cols=41 Identities=29% Similarity=0.533 Sum_probs=33.5
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEECCEeC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLNKERL 85 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~ 85 (121)
.++..+.|.||+||||||++++|.+.+. +..+.|.....++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~ 161 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPI 161 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCCh
Confidence 4678999999999999999999998665 4567887766554
No 487
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.29 E-value=5.6e-07 Score=71.74 Aligned_cols=51 Identities=29% Similarity=0.468 Sum_probs=38.8
Q ss_pred eeEEEcCCcceEEeeEE-EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345 26 GLSVTLDKRPILKDVSG-VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77 (121)
Q Consensus 26 ~l~~~~~~~~~l~~vsl-~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~ 77 (121)
++..+|+.. -++=-.| ..++|+++||+|+||-||||.+|+|+|.+.|.=|+
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~ 130 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGR 130 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence 456677542 1222333 45899999999999999999999999999987664
No 488
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.29 E-value=5.1e-07 Score=67.73 Aligned_cols=63 Identities=29% Similarity=0.443 Sum_probs=43.8
Q ss_pred EEEeeeEEEcCC--cceEEeeEEEEe-------CCeEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECCEe
Q psy16345 22 LVFSGLSVTLDK--RPILKDVSGVVK-------PGELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKER 84 (121)
Q Consensus 22 i~~~~l~~~~~~--~~~l~~vsl~i~-------~G~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~ 84 (121)
+.+++.++.+.. +.+++++++.+. +|++++++|+||+||||+++.|++.+.. ..|-|..++..
T Consensus 41 i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 41 VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred EEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 555555554433 345777777776 4589999999999999999999887532 33445555443
No 489
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.27 E-value=3e-07 Score=69.64 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.2
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i 78 (121)
+.+++++++...++.+++|+|++|||||||++.+...+......+
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v 65 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKV 65 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 458999999999999999999999999999999998665443344
No 490
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=1.8e-06 Score=64.53 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=28.1
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
-++++.+++.+| +.+|+|||||||||++.+|.=
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~ 43 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALSL 43 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 357778888776 899999999999999999863
No 491
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.25 E-value=1.2e-06 Score=66.23 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=35.3
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
|.=+.+.+++|+|++||||||||+.+.+.+....+.+.+.|..
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~ 141 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ 141 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence 4456799999999999999999999999877666666776654
No 492
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.25 E-value=6.9e-07 Score=59.50 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=19.9
Q ss_pred EEEECCCCchHHHHHHHHHcC
Q psy16345 50 LAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 50 ~~liG~nGsGKSTLl~~l~gl 70 (121)
++|+|++|||||||++.|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999987
No 493
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=98.25 E-value=1.4e-06 Score=69.24 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=35.0
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS 75 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~ 75 (121)
.-|.-|.+.+|++++|+|+||+|||||+++|++...++.
T Consensus 148 ~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~ 186 (442)
T PRK08927 148 ALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV 186 (442)
T ss_pred EEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence 446668999999999999999999999999999988764
No 494
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.24 E-value=1e-06 Score=62.16 Aligned_cols=36 Identities=39% Similarity=0.469 Sum_probs=29.8
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCE
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKE 83 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~ 83 (121)
-+++|+|++|||||||++.|..++.+. -|.|...+.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 489999999999999999999887653 378887554
No 495
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=1.4e-06 Score=64.64 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=30.0
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD 74 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~ 74 (121)
+.+.+|+.++|+|++|+|||||++.|++.....
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 478899999999999999999999999987654
No 496
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=6.9e-07 Score=69.76 Aligned_cols=37 Identities=41% Similarity=0.717 Sum_probs=32.8
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+++++.++.+.+|++++|+||||+||||++..|+...
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4577788889999999999999999999999998754
No 497
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.22 E-value=1.4e-06 Score=67.34 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=34.3
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK 82 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g 82 (121)
++.+..+.|.|++|||||||+++|++.+++...-+.+.+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 557788999999999999999999999998887777665
No 498
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=1.7e-06 Score=74.98 Aligned_cols=44 Identities=25% Similarity=0.491 Sum_probs=33.2
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
..|+++|+. +|++.. .|+|+-. +.+++|+|||||||||+|.+|+
T Consensus 4 ~~L~l~nf~-s~~~~~---~idF~~~-~gl~~I~G~nGaGKSTildAI~ 47 (1042)
T TIGR00618 4 LRLTLKNFG-SYKGTH---TIDFTAL-GPIFLICGKTGAGKTTLLDAIT 47 (1042)
T ss_pred eEEEEeCee-ccCCCc---eeeecCC-CCeEEEECCCCCCHHHHHHHHH
Confidence 457888886 465442 2455533 2799999999999999999998
No 499
>PLN02165 adenylate isopentenyltransferase
Probab=98.21 E-value=1.3e-06 Score=67.31 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=34.2
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC---CCccEE-EECCEeCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK---LDSGVI-RLNKERLN 86 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~---~~~G~i-~~~g~~~~ 86 (121)
++|.+++|+||+|||||||...|++.+. .+.+++ .|.|.++.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg 86 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT 86 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence 6788999999999999999999999865 345666 45777763
No 500
>PRK07429 phosphoribulokinase; Provisional
Probab=98.21 E-value=1.6e-06 Score=66.72 Aligned_cols=32 Identities=44% Similarity=0.571 Sum_probs=27.8
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCCCccEEE
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~ 79 (121)
=++||.|+||||||||++.|++++.+..+.+.
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi 40 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLGEELVTVI 40 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccCceEEE
Confidence 38999999999999999999999887765543
Done!