Query psy16345
Match_columns 121
No_of_seqs 211 out of 2427
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 19:00:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 6.4E-31 2.2E-35 203.0 13.2 96 21-116 3-100 (381)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 4.9E-31 1.7E-35 202.3 12.4 97 21-117 4-106 (359)
3 1b0u_A Histidine permease; ABC 100.0 1.5E-30 5.2E-35 191.9 12.5 95 21-115 6-117 (262)
4 1ji0_A ABC transporter; ATP bi 100.0 3.6E-30 1.2E-34 187.7 14.2 96 21-116 6-106 (240)
5 2pcj_A ABC transporter, lipopr 100.0 2.6E-30 8.7E-35 186.8 12.4 96 21-116 4-107 (224)
6 2yyz_A Sugar ABC transporter, 100.0 3.7E-30 1.3E-34 197.5 14.0 96 21-116 3-100 (359)
7 2olj_A Amino acid ABC transpor 100.0 2.3E-30 7.8E-35 191.3 12.3 95 21-115 24-124 (263)
8 1sgw_A Putative ABC transporte 100.0 3.9E-30 1.3E-34 185.1 12.6 95 20-116 9-103 (214)
9 1z47_A CYSA, putative ABC-tran 100.0 5.1E-30 1.7E-34 196.5 13.2 98 19-116 12-112 (355)
10 3tif_A Uncharacterized ABC tra 100.0 2.8E-30 9.7E-35 187.8 11.2 96 21-116 1-108 (235)
11 1vpl_A ABC transporter, ATP-bi 100.0 5.2E-30 1.8E-34 188.7 12.7 97 20-116 14-113 (256)
12 2it1_A 362AA long hypothetical 100.0 5.8E-30 2E-34 196.6 13.4 96 21-116 3-100 (362)
13 4g1u_C Hemin import ATP-bindin 100.0 7.5E-30 2.6E-34 188.7 13.4 98 20-117 10-111 (266)
14 1v43_A Sugar-binding transport 100.0 5.9E-30 2E-34 197.1 13.3 96 21-116 11-108 (372)
15 3tui_C Methionine import ATP-b 100.0 5.1E-30 1.7E-34 197.0 12.7 97 20-116 23-130 (366)
16 1g29_1 MALK, maltose transport 100.0 7.5E-30 2.6E-34 196.6 13.7 96 21-116 3-106 (372)
17 1g6h_A High-affinity branched- 100.0 2.7E-30 9.1E-35 190.0 10.6 96 21-116 7-107 (257)
18 1oxx_K GLCV, glucose, ABC tran 100.0 4.9E-30 1.7E-34 196.4 12.4 97 21-117 3-108 (353)
19 3d31_A Sulfate/molybdate ABC t 100.0 5E-30 1.7E-34 196.0 12.1 95 21-116 1-97 (348)
20 3nh6_A ATP-binding cassette SU 100.0 2.4E-29 8.2E-34 189.4 13.7 96 21-117 53-153 (306)
21 3gfo_A Cobalt import ATP-bindi 100.0 3.4E-29 1.2E-33 186.1 12.4 96 21-116 7-110 (275)
22 2ff7_A Alpha-hemolysin translo 100.0 3.7E-29 1.3E-33 183.2 12.2 95 21-116 7-107 (247)
23 2ihy_A ABC transporter, ATP-bi 100.0 2.5E-29 8.4E-34 187.1 11.0 97 20-116 20-124 (279)
24 2ixe_A Antigen peptide transpo 100.0 5.5E-29 1.9E-33 184.4 12.5 95 21-116 16-117 (271)
25 1mv5_A LMRA, multidrug resista 100.0 2.1E-29 7.2E-34 183.8 9.1 93 22-115 2-99 (243)
26 2yz2_A Putative ABC transporte 100.0 1.3E-28 4.3E-33 181.9 12.6 96 21-116 2-104 (266)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 9.8E-29 3.4E-33 181.0 10.2 96 21-116 3-105 (250)
28 2onk_A Molybdate/tungstate ABC 100.0 1.9E-28 6.5E-33 178.8 10.7 92 22-116 2-95 (240)
29 2zu0_C Probable ATP-dependent 100.0 3.7E-28 1.3E-32 179.6 11.1 95 21-115 20-121 (267)
30 2nq2_C Hypothetical ABC transp 100.0 1.2E-27 4.2E-32 175.7 12.5 87 21-116 4-91 (253)
31 2pze_A Cystic fibrosis transme 99.9 1.2E-27 4.3E-32 173.2 11.8 86 21-116 6-93 (229)
32 2ghi_A Transport protein; mult 99.9 7.9E-28 2.7E-32 177.2 10.6 94 21-116 17-117 (260)
33 2qi9_C Vitamin B12 import ATP- 99.9 1.7E-27 5.8E-32 174.7 10.5 91 21-116 4-98 (249)
34 3gd7_A Fusion complex of cysti 99.9 2.2E-27 7.5E-32 183.8 10.1 94 20-115 18-117 (390)
35 2cbz_A Multidrug resistance-as 99.9 2.8E-27 9.7E-32 172.1 9.7 86 21-116 3-90 (237)
36 3b5x_A Lipid A export ATP-bind 99.9 6.5E-27 2.2E-31 188.2 12.6 96 20-116 340-441 (582)
37 4a82_A Cystic fibrosis transme 99.9 6E-27 2.1E-31 188.4 11.8 97 21-118 339-441 (578)
38 3b60_A Lipid A export ATP-bind 99.9 6.8E-27 2.3E-31 188.1 11.7 95 21-116 341-441 (582)
39 3qf4_A ABC transporter, ATP-bi 99.9 7.6E-27 2.6E-31 188.2 10.0 97 21-118 341-443 (587)
40 3qf4_B Uncharacterized ABC tra 99.9 1E-26 3.5E-31 187.8 10.6 97 21-118 354-455 (598)
41 2pjz_A Hypothetical protein ST 99.9 8.7E-27 3E-31 172.1 9.3 92 21-116 1-98 (263)
42 2yl4_A ATP-binding cassette SU 99.9 1.5E-26 5.3E-31 186.5 11.1 95 22-117 342-443 (595)
43 4f4c_A Multidrug resistance pr 99.9 4.2E-26 1.4E-30 197.0 11.7 96 21-117 1076-1178(1321)
44 4f4c_A Multidrug resistance pr 99.9 1.5E-25 5E-30 193.6 12.2 99 21-120 415-520 (1321)
45 3g5u_A MCG1178, multidrug resi 99.9 5.1E-25 1.7E-29 189.9 12.5 97 21-118 387-490 (1284)
46 2bbs_A Cystic fibrosis transme 99.9 7.1E-25 2.4E-29 163.9 7.7 81 21-113 40-120 (290)
47 3g5u_A MCG1178, multidrug resi 99.9 5.5E-24 1.9E-28 183.5 10.2 96 21-117 1030-1132(1284)
48 1htw_A HI0065; nucleotide-bind 99.8 3.7E-24 1.3E-28 147.4 -8.8 91 22-116 8-100 (158)
49 3bk7_A ABC transporter ATP-bin 99.8 1.3E-20 4.5E-25 152.6 9.8 87 19-115 355-441 (607)
50 1yqt_A RNAse L inhibitor; ATP- 99.8 1.9E-20 6.4E-25 149.9 9.8 87 19-115 285-371 (538)
51 2iw3_A Elongation factor 3A; a 99.8 3.4E-20 1.2E-24 156.3 8.6 88 20-114 670-763 (986)
52 3ozx_A RNAse L inhibitor; ATP 99.8 1.2E-19 4E-24 145.3 10.5 87 20-115 268-354 (538)
53 2dpy_A FLII, flagellum-specifi 99.7 4.2E-20 1.4E-24 144.7 -4.7 95 21-116 131-239 (438)
54 3bk7_A ABC transporter ATP-bin 99.7 6.7E-19 2.3E-23 142.6 1.8 89 25-114 95-202 (607)
55 2iw3_A Elongation factor 3A; a 99.7 9.1E-18 3.1E-22 141.6 8.5 84 21-114 435-519 (986)
56 1yqt_A RNAse L inhibitor; ATP- 99.7 8.8E-19 3E-23 140.2 2.2 91 22-113 21-131 (538)
57 2npi_A Protein CLP1; CLP1-PCF1 99.7 2.1E-20 7.2E-25 147.3 -11.2 84 21-116 118-206 (460)
58 3b9q_A Chloroplast SRP recepto 99.7 1.5E-18 5.1E-23 130.2 -0.8 80 37-116 90-180 (302)
59 3ux8_A Excinuclease ABC, A sub 99.7 9.6E-18 3.3E-22 136.7 2.7 83 33-115 30-159 (670)
60 2v9p_A Replication protein E1; 99.7 2.5E-20 8.6E-25 140.2 -11.5 56 21-80 101-156 (305)
61 2jeo_A Uridine-cytidine kinase 99.7 1.4E-17 4.7E-22 120.6 2.9 73 32-115 10-82 (245)
62 2gza_A Type IV secretion syste 99.7 6.5E-18 2.2E-22 129.2 1.0 95 23-117 137-250 (361)
63 1z6g_A Guanylate kinase; struc 99.7 3E-18 1E-22 122.6 -1.8 69 33-105 9-82 (218)
64 3j16_B RLI1P; ribosome recycli 99.7 1.2E-16 4E-21 129.5 6.8 82 25-115 350-437 (608)
65 3sop_A Neuronal-specific septi 99.6 4.6E-18 1.6E-22 125.7 -2.1 69 49-117 4-73 (270)
66 2og2_A Putative signal recogni 99.6 1E-17 3.4E-22 128.5 -0.4 79 38-116 148-237 (359)
67 1znw_A Guanylate kinase, GMP k 99.6 1.7E-18 5.7E-23 122.5 -4.4 74 34-113 9-86 (207)
68 1sq5_A Pantothenate kinase; P- 99.6 4.5E-19 1.6E-23 132.8 -8.6 93 21-116 37-153 (308)
69 2yhs_A FTSY, cell division pro 99.6 1.3E-17 4.3E-22 132.3 -0.8 80 37-116 283-372 (503)
70 3b85_A Phosphate starvation-in 99.6 6.3E-19 2.2E-23 126.0 -7.9 66 30-100 9-75 (208)
71 3aez_A Pantothenate kinase; tr 99.6 2.7E-18 9.2E-23 129.3 -6.6 78 21-114 43-143 (312)
72 2qag_B Septin-6, protein NEDD5 99.6 4.4E-18 1.5E-22 132.9 -6.8 86 21-116 16-107 (427)
73 3szr_A Interferon-induced GTP- 99.6 1.1E-17 3.6E-22 135.6 -4.9 92 21-115 10-121 (608)
74 1tq4_A IIGP1, interferon-induc 99.6 9.9E-18 3.4E-22 130.5 -5.0 77 34-116 36-132 (413)
75 1rj9_A FTSY, signal recognitio 99.6 2.2E-16 7.6E-21 118.5 1.1 71 46-116 101-181 (304)
76 1u0l_A Probable GTPase ENGC; p 99.6 1.7E-16 5.9E-21 118.5 0.1 73 42-115 164-259 (301)
77 2qm8_A GTPase/ATPase; G protei 99.6 2.2E-18 7.5E-23 130.9 -11.0 84 21-104 29-120 (337)
78 2pt7_A CAG-ALFA; ATPase, prote 99.6 1.2E-16 4.1E-21 121.0 -2.5 77 35-116 159-237 (330)
79 1tf7_A KAIC; homohexamer, hexa 99.6 4.4E-17 1.5E-21 129.6 -5.2 81 21-101 12-98 (525)
80 1s96_A Guanylate kinase, GMP k 99.5 2.7E-17 9.1E-22 118.3 -6.1 70 39-108 8-79 (219)
81 3euj_A Chromosome partition pr 99.5 1.1E-15 3.7E-20 121.0 1.7 52 34-86 17-68 (483)
82 2obl_A ESCN; ATPase, hydrolase 99.5 4.1E-16 1.4E-20 118.9 -0.7 79 21-100 45-135 (347)
83 4aby_A DNA repair protein RECN 99.5 2.4E-14 8.2E-19 110.0 7.8 75 35-111 49-166 (415)
84 3e70_C DPA, signal recognition 99.5 1.9E-15 6.5E-20 114.5 1.5 73 44-116 126-208 (328)
85 2qnr_A Septin-2, protein NEDD5 99.5 6.5E-16 2.2E-20 115.5 -1.3 83 25-114 2-86 (301)
86 3tr0_A Guanylate kinase, GMP k 99.5 4.3E-16 1.5E-20 108.8 -3.3 68 41-112 1-72 (205)
87 2yv5_A YJEQ protein; hydrolase 99.5 1.8E-14 6.3E-19 107.7 4.1 68 43-112 161-240 (302)
88 3j16_B RLI1P; ribosome recycli 99.5 1.1E-14 3.9E-19 118.0 3.1 53 25-78 81-134 (608)
89 2eyu_A Twitching motility prot 99.5 1.7E-15 5.8E-20 111.4 -1.8 71 22-98 6-77 (261)
90 1t9h_A YLOQ, probable GTPase E 99.5 7E-15 2.4E-19 110.6 1.5 71 42-113 168-248 (307)
91 2qag_C Septin-7; cell cycle, c 99.5 1.4E-15 4.8E-20 118.6 -2.6 87 21-116 11-100 (418)
92 1qhl_A Protein (cell division 99.5 9.5E-16 3.2E-20 110.9 -3.7 72 20-99 8-91 (227)
93 3ozx_A RNAse L inhibitor; ATP 99.5 7.5E-15 2.6E-19 117.5 0.6 53 25-78 3-56 (538)
94 1zp6_A Hypothetical protein AT 99.4 5.4E-15 1.9E-19 102.3 -2.1 69 43-115 5-75 (191)
95 2i3b_A HCR-ntpase, human cance 99.4 3.4E-14 1.2E-18 100.0 1.0 52 47-100 1-54 (189)
96 1p9r_A General secretion pathw 99.4 1.1E-15 3.8E-20 119.1 -7.4 91 23-115 145-258 (418)
97 2rcn_A Probable GTPase ENGC; Y 99.4 6.6E-14 2.3E-18 107.3 2.5 74 37-111 206-281 (358)
98 3ux8_A Excinuclease ABC, A sub 99.4 1.3E-13 4.5E-18 112.3 3.9 35 34-68 335-369 (670)
99 4a74_A DNA repair and recombin 99.4 1.2E-14 4E-19 102.8 -2.6 70 43-115 21-97 (231)
100 4gp7_A Metallophosphoesterase; 99.4 2.3E-13 7.8E-18 93.7 4.0 43 39-81 1-55 (171)
101 3asz_A Uridine kinase; cytidin 99.4 3.7E-13 1.3E-17 94.6 4.4 54 44-115 3-58 (211)
102 2ewv_A Twitching motility prot 99.4 1.6E-14 5.3E-19 111.0 -3.0 70 44-114 133-208 (372)
103 3lnc_A Guanylate kinase, GMP k 99.3 2.8E-13 9.5E-18 96.8 2.1 38 34-71 14-52 (231)
104 2ehv_A Hypothetical protein PH 99.3 1.5E-14 5.1E-19 103.4 -5.4 75 22-99 7-87 (251)
105 2oap_1 GSPE-2, type II secreti 99.3 4.1E-13 1.4E-17 106.9 2.0 81 34-114 247-328 (511)
106 1ewq_A DNA mismatch repair pro 99.3 1.2E-13 4.1E-18 114.4 -1.6 82 22-116 551-636 (765)
107 1pui_A ENGB, probable GTP-bind 99.3 1.6E-13 5.5E-18 95.7 -0.9 57 21-80 3-64 (210)
108 2bbw_A Adenylate kinase 4, AK4 99.3 2.9E-14 9.9E-19 102.9 -5.3 69 46-114 26-97 (246)
109 2vf7_A UVRA2, excinuclease ABC 99.3 3.3E-12 1.1E-16 106.7 4.9 46 20-70 501-547 (842)
110 2o8b_B DNA mismatch repair pro 99.3 7.8E-13 2.7E-17 112.4 1.2 51 21-72 750-813 (1022)
111 4eun_A Thermoresistant glucoki 99.2 1.1E-13 3.7E-18 97.1 -4.4 76 36-115 18-96 (200)
112 3uie_A Adenylyl-sulfate kinase 99.2 3.6E-14 1.2E-18 99.6 -7.0 61 25-86 3-65 (200)
113 3jvv_A Twitching mobility prot 99.2 1.2E-12 4.2E-17 100.1 0.6 74 43-116 119-193 (356)
114 3nwj_A ATSK2; P loop, shikimat 99.2 3.8E-13 1.3E-17 98.4 -2.8 51 21-71 17-72 (250)
115 3kta_A Chromosome segregation 99.2 9.5E-12 3.2E-16 85.4 3.8 39 38-77 18-56 (182)
116 2bdt_A BH3686; alpha-beta prot 99.2 3.4E-13 1.2E-17 93.4 -3.6 64 47-115 2-65 (189)
117 2j41_A Guanylate kinase; GMP, 99.2 6.8E-12 2.3E-16 87.3 2.3 35 42-76 1-35 (207)
118 2r6f_A Excinuclease ABC subuni 99.2 7.6E-12 2.6E-16 105.5 2.7 44 20-68 628-671 (972)
119 1ye8_A Protein THEP1, hypothet 99.2 4E-12 1.4E-16 88.4 0.9 47 49-100 2-52 (178)
120 2x8a_A Nuclear valosin-contain 99.2 4.6E-14 1.6E-18 104.2 -9.9 52 31-86 30-81 (274)
121 4e22_A Cytidylate kinase; P-lo 99.2 2E-12 6.9E-17 94.0 -1.1 56 45-100 25-96 (252)
122 3c8u_A Fructokinase; YP_612366 99.1 7.5E-12 2.6E-16 88.2 1.4 43 44-86 19-64 (208)
123 1cr0_A DNA primase/helicase; R 99.1 2E-12 6.9E-17 95.4 -2.2 51 35-85 23-74 (296)
124 1in4_A RUVB, holliday junction 99.1 2.6E-14 8.8E-19 107.8 -12.7 91 22-114 19-124 (334)
125 1pzn_A RAD51, DNA repair and r 99.1 1.3E-12 4.5E-17 99.4 -3.4 77 36-115 119-203 (349)
126 2f1r_A Molybdopterin-guanine d 99.1 2.3E-12 7.8E-17 89.4 -2.0 56 48-103 3-73 (171)
127 1zu4_A FTSY; GTPase, signal re 99.1 7.9E-12 2.7E-16 94.3 -0.1 80 37-116 95-188 (320)
128 1e69_A Chromosome segregation 99.1 1E-11 3.5E-16 93.2 0.4 32 39-71 17-48 (322)
129 1lvg_A Guanylate kinase, GMP k 99.1 1.2E-11 4E-16 86.9 0.6 28 45-72 2-29 (198)
130 1nij_A Hypothetical protein YJ 99.1 6.3E-13 2.2E-17 99.8 -6.3 68 48-115 5-102 (318)
131 1lw7_A Transcriptional regulat 99.1 6.7E-12 2.3E-16 95.5 -1.0 77 36-114 157-246 (365)
132 3a00_A Guanylate kinase, GMP k 99.0 4.4E-11 1.5E-15 82.9 1.6 26 47-72 1-26 (186)
133 1kgd_A CASK, peripheral plasma 99.0 8.1E-11 2.8E-15 81.2 1.0 36 45-80 3-39 (180)
134 3thx_B DNA mismatch repair pro 99.0 1.9E-10 6.4E-15 96.9 3.4 49 21-69 640-695 (918)
135 1wb9_A DNA mismatch repair pro 99.0 3.4E-10 1.2E-14 94.2 4.1 49 22-71 578-631 (800)
136 3thx_A DNA mismatch repair pro 99.0 4.5E-10 1.5E-14 94.8 4.7 56 21-76 631-699 (934)
137 2w0m_A SSO2452; RECA, SSPF, un 98.9 3.1E-11 1.1E-15 84.8 -2.1 51 35-85 10-61 (235)
138 3vaa_A Shikimate kinase, SK; s 98.9 4.6E-10 1.6E-14 78.4 3.3 38 34-71 12-49 (199)
139 2ygr_A Uvrabc system protein A 98.9 4.5E-10 1.5E-14 95.1 3.6 44 20-68 646-689 (993)
140 1udx_A The GTP-binding protein 98.9 1E-09 3.6E-14 85.4 4.1 35 37-71 147-181 (416)
141 1n0w_A DNA repair protein RAD5 98.9 1.4E-09 4.7E-14 77.1 4.4 42 43-84 20-68 (243)
142 1w1w_A Structural maintenance 98.9 7.7E-10 2.6E-14 85.8 3.3 49 21-75 6-54 (430)
143 1ixz_A ATP-dependent metallopr 98.9 2.3E-11 7.9E-16 87.7 -5.2 60 22-85 26-85 (254)
144 3tau_A Guanylate kinase, GMP k 98.9 6.2E-10 2.1E-14 78.5 2.2 29 45-73 6-34 (208)
145 2o5v_A DNA replication and rep 98.9 1.8E-09 6.2E-14 82.6 5.0 43 24-69 6-48 (359)
146 2vp4_A Deoxynucleoside kinase; 98.9 5.6E-10 1.9E-14 79.8 1.9 41 41-85 14-54 (230)
147 1iy2_A ATP-dependent metallopr 98.9 2.8E-11 9.5E-16 88.6 -5.2 60 22-85 50-109 (278)
148 3tqc_A Pantothenate kinase; bi 98.9 2.1E-11 7.3E-16 92.1 -6.2 53 27-79 66-126 (321)
149 3pih_A Uvrabc system protein A 98.8 2.5E-09 8.6E-14 90.1 5.4 31 34-64 597-627 (916)
150 1ls1_A Signal recognition part 98.8 1.3E-10 4.6E-15 86.5 -2.5 61 22-86 77-137 (295)
151 1oix_A RAS-related protein RAB 98.8 4.3E-09 1.5E-13 72.7 4.3 37 49-85 31-78 (191)
152 1rz3_A Hypothetical protein rb 98.8 6.8E-10 2.3E-14 77.8 0.1 39 44-82 19-57 (201)
153 3ec2_A DNA replication protein 98.8 3.6E-10 1.2E-14 77.5 -1.7 36 41-76 32-67 (180)
154 2kjq_A DNAA-related protein; s 98.8 1.1E-09 3.6E-14 74.0 0.4 44 36-85 30-75 (149)
155 1knq_A Gluconate kinase; ALFA/ 98.8 1.6E-09 5.6E-14 73.7 1.4 38 45-86 6-43 (175)
156 2qt1_A Nicotinamide riboside k 98.8 6E-09 2E-13 72.8 4.2 31 42-72 16-46 (207)
157 3cr8_A Sulfate adenylyltranfer 98.7 1.9E-09 6.5E-14 86.6 1.5 43 43-85 365-409 (552)
158 4ad8_A DNA repair protein RECN 98.7 4.8E-09 1.6E-13 83.2 3.7 68 36-104 50-160 (517)
159 3k1j_A LON protease, ATP-depen 98.7 1.4E-09 4.9E-14 87.7 0.4 75 24-99 37-112 (604)
160 3qf7_A RAD50; ABC-ATPase, ATPa 98.7 7E-09 2.4E-13 79.2 4.2 32 36-68 13-44 (365)
161 3ney_A 55 kDa erythrocyte memb 98.7 3.3E-09 1.1E-13 75.0 2.0 32 41-72 13-44 (197)
162 1cke_A CK, MSSA, protein (cyti 98.7 4.7E-10 1.6E-14 79.1 -2.4 54 47-100 5-74 (227)
163 1vma_A Cell division protein F 98.7 1.8E-09 6.3E-14 80.9 0.2 48 39-86 96-143 (306)
164 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 8.3E-09 2.8E-13 79.8 3.7 68 43-110 16-103 (392)
165 1svm_A Large T antigen; AAA+ f 98.7 1.5E-09 5.1E-14 83.6 -0.7 44 34-80 156-199 (377)
166 2p67_A LAO/AO transport system 98.7 7.2E-11 2.4E-15 89.4 -8.4 63 22-84 31-93 (341)
167 1odf_A YGR205W, hypothetical 3 98.7 6.5E-09 2.2E-13 77.3 2.2 58 45-115 29-86 (290)
168 2f9l_A RAB11B, member RAS onco 98.7 1.5E-08 5.3E-13 70.0 3.8 37 49-85 7-54 (199)
169 2pez_A Bifunctional 3'-phospho 98.6 1.4E-09 4.7E-14 74.5 -1.9 39 45-84 3-43 (179)
170 1kag_A SKI, shikimate kinase I 98.6 1.3E-08 4.4E-13 68.8 2.4 28 46-73 3-30 (173)
171 3m6a_A ATP-dependent protease 98.6 4.3E-10 1.5E-14 89.9 -6.0 58 25-83 87-144 (543)
172 1sxj_E Activator 1 40 kDa subu 98.6 9.8E-09 3.3E-13 76.7 1.4 53 49-101 38-93 (354)
173 3lda_A DNA repair protein RAD5 98.6 3.4E-08 1.2E-12 76.5 4.1 43 43-85 174-223 (400)
174 2cvh_A DNA repair and recombin 98.6 2E-08 6.8E-13 70.1 2.5 45 37-83 9-54 (220)
175 1nlf_A Regulatory protein REPA 98.5 3E-08 1E-12 72.5 2.4 30 43-72 26-55 (279)
176 1f2t_A RAD50 ABC-ATPase; DNA d 98.5 5.2E-08 1.8E-12 65.6 3.2 29 39-68 16-44 (149)
177 3hr8_A Protein RECA; alpha and 98.5 1E-08 3.5E-13 78.4 -0.8 72 43-114 57-130 (356)
178 1tf7_A KAIC; homohexamer, hexa 98.5 3.8E-08 1.3E-12 78.2 2.4 41 41-82 275-317 (525)
179 2px0_A Flagellar biosynthesis 98.5 1.9E-08 6.4E-13 74.9 0.6 38 45-82 103-141 (296)
180 1mky_A Probable GTP-binding pr 98.5 1.5E-07 5.3E-12 73.1 5.2 38 48-85 181-230 (439)
181 4eaq_A DTMP kinase, thymidylat 98.4 7.2E-08 2.5E-12 69.1 2.7 45 35-80 11-58 (229)
182 3ice_A Transcription terminati 98.4 1.7E-08 5.9E-13 78.3 -0.6 51 21-71 133-198 (422)
183 2ffh_A Protein (FFH); SRP54, s 98.4 1.3E-08 4.4E-13 79.5 -1.9 59 24-86 79-137 (425)
184 2www_A Methylmalonic aciduria 98.4 4.6E-08 1.6E-12 74.2 1.2 39 45-83 72-110 (349)
185 2qag_A Septin-2, protein NEDD5 98.4 1.9E-08 6.4E-13 76.7 -1.5 51 21-77 17-67 (361)
186 1m7g_A Adenylylsulfate kinase; 98.3 8.7E-08 3E-12 67.3 1.1 43 42-84 20-64 (211)
187 3qkt_A DNA double-strand break 98.3 3.5E-07 1.2E-11 68.8 4.1 30 38-68 15-44 (339)
188 1jjv_A Dephospho-COA kinase; P 98.3 3.2E-07 1.1E-11 63.8 3.3 22 49-70 4-25 (206)
189 2dr3_A UPF0273 protein PH0284; 98.3 2.8E-07 9.4E-12 65.2 3.0 47 37-83 12-60 (247)
190 2gj8_A MNME, tRNA modification 98.3 6.9E-07 2.4E-11 60.5 4.8 27 45-71 2-28 (172)
191 1m2o_B GTP-binding protein SAR 98.3 6.5E-07 2.2E-11 61.5 4.5 49 35-84 12-68 (190)
192 3qks_A DNA double-strand break 98.3 3.6E-07 1.2E-11 64.3 3.2 29 39-68 16-44 (203)
193 1j8m_F SRP54, signal recogniti 98.3 1.2E-08 4.1E-13 76.1 -4.7 59 24-85 77-136 (297)
194 3t34_A Dynamin-related protein 98.3 3.4E-07 1.2E-11 69.3 3.1 42 34-78 24-67 (360)
195 1f6b_A SAR1; gtpases, N-termin 98.3 9.9E-08 3.4E-12 66.1 -0.0 55 29-84 7-70 (198)
196 2dhr_A FTSH; AAA+ protein, hex 98.3 1E-07 3.5E-12 75.7 -0.1 60 22-85 41-100 (499)
197 1y63_A LMAJ004144AAA protein; 98.3 4.1E-07 1.4E-11 62.5 2.9 32 39-70 2-33 (184)
198 2yvu_A Probable adenylyl-sulfa 98.3 2.7E-07 9.3E-12 63.3 1.9 36 43-78 9-44 (186)
199 2qtf_A Protein HFLX, GTP-bindi 98.2 9.3E-07 3.2E-11 67.5 4.9 39 47-85 178-228 (364)
200 2qor_A Guanylate kinase; phosp 98.2 4.6E-07 1.6E-11 63.2 2.6 29 43-71 8-36 (204)
201 2if2_A Dephospho-COA kinase; a 98.2 5.7E-07 2E-11 62.3 2.6 22 49-70 3-24 (204)
202 2dy1_A Elongation factor G; tr 98.2 7.3E-08 2.5E-12 78.8 -2.4 44 41-85 3-48 (665)
203 1sxj_C Activator 1 40 kDa subu 98.2 2.4E-08 8.1E-13 74.8 -5.5 52 25-76 22-75 (340)
204 2wji_A Ferrous iron transport 98.2 3.1E-06 1.1E-10 56.6 5.4 24 48-71 4-27 (165)
205 2wjg_A FEOB, ferrous iron tran 98.1 1.8E-06 6.3E-11 58.4 4.1 22 49-70 9-30 (188)
206 2ohf_A Protein OLA1, GTP-bindi 98.1 1.6E-06 5.6E-11 67.1 3.4 40 43-82 18-68 (396)
207 3auy_A DNA double-strand break 98.1 3.3E-06 1.1E-10 64.2 5.0 31 37-68 16-46 (371)
208 2zr9_A Protein RECA, recombina 98.1 3E-07 1E-11 69.9 -0.8 38 43-80 57-94 (349)
209 1ega_A Protein (GTP-binding pr 98.1 1.2E-06 4E-11 65.1 2.1 25 46-70 7-31 (301)
210 3cm0_A Adenylate kinase; ATP-b 98.1 2.1E-06 7E-11 58.5 3.1 25 45-69 2-26 (186)
211 3t61_A Gluconokinase; PSI-biol 98.0 1.8E-06 6.3E-11 59.8 2.6 25 47-71 18-42 (202)
212 2zej_A Dardarin, leucine-rich 98.0 2.6E-06 8.8E-11 58.0 3.3 23 49-71 4-26 (184)
213 2vf7_A UVRA2, excinuclease ABC 98.0 2.7E-06 9.3E-11 71.3 3.7 39 21-64 15-53 (842)
214 1q3t_A Cytidylate kinase; nucl 98.0 3.3E-06 1.1E-10 60.1 3.3 27 43-69 12-38 (236)
215 2ga8_A Hypothetical 39.9 kDa p 98.0 4E-07 1.4E-11 69.6 -1.9 37 35-71 10-48 (359)
216 1np6_A Molybdopterin-guanine d 98.0 2.4E-06 8.3E-11 59.0 2.1 35 48-82 7-44 (174)
217 3kb2_A SPBC2 prophage-derived 98.0 4.5E-06 1.5E-10 55.8 3.1 23 49-71 3-25 (173)
218 1qhx_A CPT, protein (chloramph 97.9 5.8E-06 2E-10 55.8 3.6 25 47-71 3-27 (178)
219 2p5t_B PEZT; postsegregational 97.9 3.7E-06 1.3E-10 60.6 2.4 40 43-84 28-67 (253)
220 1lv7_A FTSH; alpha/beta domain 97.9 3E-06 1E-10 60.8 1.8 46 36-85 36-81 (257)
221 2ygr_A Uvrabc system protein A 97.9 5.5E-06 1.9E-10 70.4 3.3 29 36-64 35-63 (993)
222 1kht_A Adenylate kinase; phosp 97.9 7.2E-06 2.5E-10 55.7 3.4 25 46-70 2-26 (192)
223 2ius_A DNA translocase FTSK; n 97.9 3.3E-06 1.1E-10 67.3 1.8 47 38-84 158-206 (512)
224 2r6f_A Excinuclease ABC subuni 97.9 5.7E-06 2E-10 70.1 3.4 29 36-64 33-61 (972)
225 1vht_A Dephospho-COA kinase; s 97.9 7.6E-06 2.6E-10 57.3 3.5 24 46-69 3-26 (218)
226 3lxx_A GTPase IMAP family memb 97.9 9.1E-06 3.1E-10 57.7 3.9 28 49-76 31-58 (239)
227 3r20_A Cytidylate kinase; stru 97.9 4.3E-06 1.5E-10 60.4 2.1 32 47-78 9-43 (233)
228 1ypw_A Transitional endoplasmi 97.9 3.9E-06 1.3E-10 69.9 2.0 40 42-83 233-272 (806)
229 3lw7_A Adenylate kinase relate 97.9 8.4E-06 2.9E-10 54.1 3.0 20 48-67 2-21 (179)
230 2rhm_A Putative kinase; P-loop 97.8 9.6E-06 3.3E-10 55.2 3.2 26 45-70 3-28 (193)
231 2ze6_A Isopentenyl transferase 97.8 8.8E-06 3E-10 58.9 3.1 24 48-71 2-25 (253)
232 1gtv_A TMK, thymidylate kinase 97.8 2.2E-06 7.6E-11 59.4 -0.2 25 49-73 2-26 (214)
233 3pih_A Uvrabc system protein A 97.8 4.5E-06 1.5E-10 70.5 1.6 29 36-64 13-41 (916)
234 2jaq_A Deoxyguanosine kinase; 97.8 1.1E-05 3.7E-10 55.3 3.2 22 49-70 2-23 (205)
235 2v54_A DTMP kinase, thymidylat 97.8 1.4E-05 4.8E-10 54.9 3.6 26 46-71 3-28 (204)
236 3trf_A Shikimate kinase, SK; a 97.8 1.4E-05 4.9E-10 54.3 3.3 25 46-70 4-28 (185)
237 2plr_A DTMP kinase, probable t 97.8 1.7E-05 5.7E-10 54.7 3.6 27 46-72 3-29 (213)
238 4ag6_A VIRB4 ATPase, type IV s 97.8 6.1E-06 2.1E-10 62.9 1.5 37 46-82 34-70 (392)
239 1uf9_A TT1252 protein; P-loop, 97.8 1.5E-05 5.1E-10 54.7 3.2 24 47-70 8-31 (203)
240 1ex7_A Guanylate kinase; subst 97.8 1.3E-05 4.6E-10 55.9 3.0 22 49-70 3-24 (186)
241 3iij_A Coilin-interacting nucl 97.8 1.3E-05 4.6E-10 54.3 2.9 25 45-69 9-33 (180)
242 1ly1_A Polynucleotide kinase; 97.8 1.7E-05 5.8E-10 53.3 3.3 22 48-69 3-24 (181)
243 1via_A Shikimate kinase; struc 97.8 1.4E-05 4.9E-10 54.0 2.9 23 49-71 6-28 (175)
244 3kl4_A SRP54, signal recogniti 97.8 5.9E-06 2E-10 64.6 1.1 40 46-85 96-135 (433)
245 2wwf_A Thymidilate kinase, put 97.7 1.7E-05 5.7E-10 54.9 3.1 25 45-69 8-32 (212)
246 2c95_A Adenylate kinase 1; tra 97.7 1.6E-05 5.5E-10 54.2 2.9 26 45-70 7-32 (196)
247 1tev_A UMP-CMP kinase; ploop, 97.7 2.1E-05 7.3E-10 53.3 3.5 24 46-69 2-25 (196)
248 1nn5_A Similar to deoxythymidy 97.7 2E-05 6.7E-10 54.5 3.1 25 45-69 7-31 (215)
249 1gvn_B Zeta; postsegregational 97.7 1.8E-05 6.3E-10 58.3 3.0 36 45-82 31-66 (287)
250 1jal_A YCHF protein; nucleotid 97.7 3.4E-05 1.2E-09 59.0 4.5 36 47-82 2-48 (363)
251 3ihw_A Centg3; RAS, centaurin, 97.7 6.1E-05 2.1E-09 51.2 5.4 36 49-84 22-66 (184)
252 3k53_A Ferrous iron transport 97.7 1.9E-05 6.4E-10 57.3 2.9 23 49-71 5-27 (271)
253 3ake_A Cytidylate kinase; CMP 97.7 2.5E-05 8.4E-10 53.8 2.9 22 49-70 4-25 (208)
254 2r6a_A DNAB helicase, replicat 97.6 2.1E-06 7.1E-11 67.0 -2.9 51 35-85 191-242 (454)
255 1nks_A Adenylate kinase; therm 97.6 2.4E-05 8.3E-10 53.0 2.8 23 49-71 3-25 (194)
256 4fcw_A Chaperone protein CLPB; 97.6 1.9E-05 6.4E-10 57.7 2.2 31 48-78 48-78 (311)
257 1aky_A Adenylate kinase; ATP:A 97.6 3.7E-05 1.3E-09 53.8 3.6 26 45-70 2-27 (220)
258 2vli_A Antibiotic resistance p 97.6 2.3E-05 7.8E-10 53.0 2.4 25 46-70 4-28 (183)
259 2z0h_A DTMP kinase, thymidylat 97.6 3.2E-05 1.1E-09 52.7 3.2 23 49-71 2-24 (197)
260 1ko7_A HPR kinase/phosphatase; 97.6 7E-05 2.4E-09 56.3 5.0 36 33-69 131-166 (314)
261 2bwj_A Adenylate kinase 5; pho 97.6 3.3E-05 1.1E-09 52.8 3.0 26 45-70 10-35 (199)
262 1xjc_A MOBB protein homolog; s 97.6 3.5E-05 1.2E-09 53.0 3.0 25 48-72 5-29 (169)
263 3cf0_A Transitional endoplasmi 97.6 3E-05 1E-09 57.1 2.8 40 42-83 44-83 (301)
264 2ged_A SR-beta, signal recogni 97.6 3.8E-05 1.3E-09 52.0 3.0 26 46-71 47-72 (193)
265 1zd8_A GTP:AMP phosphotransfer 97.6 3.9E-05 1.3E-09 54.0 3.0 25 45-69 5-29 (227)
266 1v5w_A DMC1, meiotic recombina 97.6 5.8E-05 2E-09 56.9 4.1 28 43-70 118-145 (343)
267 3fb4_A Adenylate kinase; psych 97.6 4.3E-05 1.5E-09 53.1 3.2 21 49-69 2-22 (216)
268 2cdn_A Adenylate kinase; phosp 97.6 5.2E-05 1.8E-09 52.3 3.5 26 45-70 18-43 (201)
269 3b1v_A Ferrous iron uptake tra 97.5 4.7E-05 1.6E-09 55.8 3.3 23 49-71 5-27 (272)
270 2pbr_A DTMP kinase, thymidylat 97.5 4.8E-05 1.6E-09 51.6 3.1 22 49-70 2-23 (195)
271 2ce7_A Cell division protein F 97.5 7.7E-06 2.6E-10 64.6 -1.1 39 31-71 35-73 (476)
272 1ukz_A Uridylate kinase; trans 97.5 5.4E-05 1.9E-09 52.1 3.4 24 46-69 14-37 (203)
273 2nzj_A GTP-binding protein REM 97.5 5.5E-05 1.9E-09 50.1 3.3 23 49-71 6-28 (175)
274 1zuh_A Shikimate kinase; alpha 97.5 5.4E-05 1.9E-09 50.7 3.3 23 48-70 8-30 (168)
275 3llm_A ATP-dependent RNA helic 97.5 2.7E-05 9.3E-10 55.3 1.8 25 44-68 73-97 (235)
276 1e6c_A Shikimate kinase; phosp 97.5 4.2E-05 1.4E-09 51.2 2.7 23 48-70 3-25 (173)
277 1z2a_A RAS-related protein RAB 97.5 4.9E-05 1.7E-09 49.9 2.9 22 49-70 7-28 (168)
278 2erx_A GTP-binding protein DI- 97.5 5.9E-05 2E-09 49.6 3.3 22 49-70 5-26 (172)
279 2z43_A DNA repair and recombin 97.5 7.3E-05 2.5E-09 55.8 4.1 28 43-70 103-130 (324)
280 2pt5_A Shikimate kinase, SK; a 97.5 5.7E-05 1.9E-09 50.4 3.2 22 49-70 2-23 (168)
281 3dl0_A Adenylate kinase; phosp 97.5 5.3E-05 1.8E-09 52.7 3.2 21 49-69 2-22 (216)
282 2lkc_A Translation initiation 97.5 7.5E-05 2.6E-09 49.6 3.8 25 46-70 7-31 (178)
283 3q72_A GTP-binding protein RAD 97.5 4.4E-05 1.5E-09 50.2 2.5 23 49-71 4-26 (166)
284 1qf9_A UMP/CMP kinase, protein 97.5 5.7E-05 1.9E-09 51.1 3.1 23 47-69 6-28 (194)
285 3q85_A GTP-binding protein REM 97.5 6.5E-05 2.2E-09 49.5 3.3 23 49-71 4-26 (169)
286 2iyv_A Shikimate kinase, SK; t 97.5 4.6E-05 1.6E-09 51.7 2.5 23 48-70 3-25 (184)
287 2dyk_A GTP-binding protein; GT 97.5 5.9E-05 2E-09 49.3 3.0 23 49-71 3-25 (161)
288 1zak_A Adenylate kinase; ATP:A 97.5 4.4E-05 1.5E-09 53.5 2.5 24 46-69 4-27 (222)
289 1kao_A RAP2A; GTP-binding prot 97.5 6E-05 2E-09 49.3 3.0 22 49-70 5-26 (167)
290 1uj2_A Uridine-cytidine kinase 97.5 5.9E-05 2E-09 54.1 3.2 24 47-70 22-45 (252)
291 1fzq_A ADP-ribosylation factor 97.5 4.6E-05 1.6E-09 51.6 2.5 23 48-70 17-39 (181)
292 3lxw_A GTPase IMAP family memb 97.5 6.4E-05 2.2E-09 54.0 3.3 24 48-71 22-45 (247)
293 1u8z_A RAS-related protein RAL 97.5 6.2E-05 2.1E-09 49.2 2.9 22 49-70 6-27 (168)
294 2ce2_X GTPase HRAS; signaling 97.5 5.2E-05 1.8E-09 49.4 2.6 22 49-70 5-26 (166)
295 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 7.7E-05 2.6E-09 53.9 3.6 25 46-70 3-27 (260)
296 1z08_A RAS-related protein RAB 97.5 6.4E-05 2.2E-09 49.5 3.0 22 49-70 8-29 (170)
297 3tw8_B RAS-related protein RAB 97.5 6.2E-05 2.1E-09 50.0 2.9 22 49-70 11-32 (181)
298 1z0j_A RAB-22, RAS-related pro 97.5 6.6E-05 2.3E-09 49.4 3.0 23 49-71 8-30 (170)
299 1ky3_A GTP-binding protein YPT 97.5 6.8E-05 2.3E-09 49.8 3.0 22 49-70 10-31 (182)
300 1c1y_A RAS-related protein RAP 97.5 7E-05 2.4E-09 49.1 2.9 22 49-70 5-26 (167)
301 1ek0_A Protein (GTP-binding pr 97.5 7.1E-05 2.4E-09 49.1 2.9 22 49-70 5-26 (170)
302 3tlx_A Adenylate kinase 2; str 97.5 8.6E-05 2.9E-09 53.2 3.6 24 46-69 28-51 (243)
303 1svi_A GTP-binding protein YSX 97.4 6.1E-05 2.1E-09 51.0 2.7 24 47-70 23-46 (195)
304 3pqc_A Probable GTP-binding pr 97.4 6.2E-05 2.1E-09 50.7 2.7 23 49-71 25-47 (195)
305 1wms_A RAB-9, RAB9, RAS-relate 97.4 7.4E-05 2.5E-09 49.6 3.0 22 49-70 9-30 (177)
306 2qmh_A HPR kinase/phosphorylas 97.4 0.00017 5.9E-09 51.1 5.0 37 33-70 21-57 (205)
307 2e87_A Hypothetical protein PH 97.4 6.3E-05 2.1E-09 56.8 2.9 26 46-71 166-191 (357)
308 2grj_A Dephospho-COA kinase; T 97.4 7.9E-05 2.7E-09 52.0 3.2 24 47-70 12-35 (192)
309 1fnn_A CDC6P, cell division co 97.4 8.1E-05 2.8E-09 55.6 3.4 36 46-81 41-80 (389)
310 3bos_A Putative DNA replicatio 97.4 8.9E-05 3E-09 51.6 3.4 26 46-71 51-76 (242)
311 2w58_A DNAI, primosome compone 97.4 5.6E-05 1.9E-09 52.0 2.3 26 48-73 55-80 (202)
312 1g16_A RAS-related protein SEC 97.4 6.7E-05 2.3E-09 49.3 2.6 22 49-70 5-26 (170)
313 3clv_A RAB5 protein, putative; 97.4 8E-05 2.8E-09 50.1 3.0 22 49-70 9-30 (208)
314 3t1o_A Gliding protein MGLA; G 97.4 7.9E-05 2.7E-09 50.2 2.9 24 49-72 16-39 (198)
315 2fn4_A P23, RAS-related protei 97.4 6.9E-05 2.4E-09 49.8 2.6 22 49-70 11-32 (181)
316 1a7j_A Phosphoribulokinase; tr 97.4 3.4E-05 1.2E-09 57.0 1.2 25 46-70 4-28 (290)
317 1wf3_A GTP-binding protein; GT 97.4 8.4E-05 2.9E-09 55.1 3.3 22 49-70 9-30 (301)
318 2qby_A CDC6 homolog 1, cell di 97.4 5.9E-05 2E-09 56.0 2.4 28 45-72 43-70 (386)
319 2cxx_A Probable GTP-binding pr 97.4 7.5E-05 2.6E-09 50.2 2.7 23 49-71 3-25 (190)
320 1r2q_A RAS-related protein RAB 97.4 8.7E-05 3E-09 48.7 2.9 21 49-69 8-28 (170)
321 2hxs_A RAB-26, RAS-related pro 97.4 0.0001 3.5E-09 49.0 3.3 22 49-70 8-29 (178)
322 4dsu_A GTPase KRAS, isoform 2B 97.4 8.9E-05 3E-09 49.7 3.0 22 49-70 6-27 (189)
323 3b9p_A CG5977-PA, isoform A; A 97.4 8.8E-05 3E-09 53.9 3.2 26 46-71 53-78 (297)
324 2oil_A CATX-8, RAS-related pro 97.4 8.8E-05 3E-09 50.3 3.0 22 49-70 27-48 (193)
325 3bc1_A RAS-related protein RAB 97.4 8.9E-05 3E-09 49.7 2.9 22 49-70 13-34 (195)
326 1upt_A ARL1, ADP-ribosylation 97.4 9.3E-05 3.2E-09 48.8 2.9 23 47-69 7-29 (171)
327 2f6r_A COA synthase, bifunctio 97.4 7.9E-05 2.7E-09 54.6 2.8 23 47-69 75-97 (281)
328 3iev_A GTP-binding protein ERA 97.4 9.8E-05 3.4E-09 54.7 3.3 23 48-70 11-33 (308)
329 2xb4_A Adenylate kinase; ATP-b 97.4 0.0001 3.6E-09 51.9 3.2 21 49-69 2-22 (223)
330 1moz_A ARL1, ADP-ribosylation 97.4 5.1E-05 1.7E-09 50.8 1.5 24 46-69 17-40 (183)
331 2a9k_A RAS-related protein RAL 97.4 0.0001 3.5E-09 49.2 2.9 22 49-70 20-41 (187)
332 1r8s_A ADP-ribosylation factor 97.4 0.00011 3.6E-09 48.3 2.9 21 49-69 2-22 (164)
333 3con_A GTPase NRAS; structural 97.4 0.0001 3.6E-09 49.7 2.9 22 49-70 23-44 (190)
334 1z0f_A RAB14, member RAS oncog 97.4 0.00011 3.7E-09 48.7 2.9 22 49-70 17-38 (179)
335 2g6b_A RAS-related protein RAB 97.4 0.00011 3.7E-09 48.9 2.9 22 49-70 12-33 (180)
336 4dhe_A Probable GTP-binding pr 97.3 6.7E-05 2.3E-09 52.0 1.9 24 48-71 30-53 (223)
337 3iby_A Ferrous iron transport 97.3 0.0001 3.4E-09 53.4 2.9 23 49-71 3-25 (256)
338 3t5d_A Septin-7; GTP-binding p 97.3 8.9E-05 3E-09 53.8 2.6 23 49-71 10-32 (274)
339 3cbq_A GTP-binding protein REM 97.3 8.8E-05 3E-09 51.0 2.3 22 49-70 25-46 (195)
340 2y8e_A RAB-protein 6, GH09086P 97.3 0.0001 3.4E-09 48.9 2.6 22 49-70 16-37 (179)
341 2efe_B Small GTP-binding prote 97.3 0.00012 4.1E-09 48.8 3.0 22 49-70 14-35 (181)
342 2dby_A GTP-binding protein; GD 97.3 9.4E-05 3.2E-09 56.6 2.7 22 49-70 3-24 (368)
343 3be4_A Adenylate kinase; malar 97.3 0.00011 3.7E-09 51.5 2.7 25 46-70 4-28 (217)
344 1nrj_B SR-beta, signal recogni 97.3 0.00012 4.2E-09 50.6 2.9 24 48-71 13-36 (218)
345 2xtp_A GTPase IMAP family memb 97.3 0.00012 4E-09 52.5 2.9 24 48-71 23-46 (260)
346 1ltq_A Polynucleotide kinase; 97.3 0.00014 4.8E-09 53.0 3.3 22 48-69 3-24 (301)
347 1vg8_A RAS-related protein RAB 97.3 0.00013 4.4E-09 49.8 3.0 22 49-70 10-31 (207)
348 1jbk_A CLPB protein; beta barr 97.3 0.00016 5.4E-09 48.2 3.4 27 45-71 41-67 (195)
349 3tkl_A RAS-related protein RAB 97.3 0.00013 4.5E-09 49.2 2.9 22 49-70 18-39 (196)
350 2bov_A RAla, RAS-related prote 97.3 0.00013 4.6E-09 49.6 2.9 22 49-70 16-37 (206)
351 1ksh_A ARF-like protein 2; sma 97.3 0.00014 4.9E-09 48.8 3.0 26 45-70 16-41 (186)
352 1e4v_A Adenylate kinase; trans 97.3 0.00012 4.3E-09 51.0 2.8 21 49-69 2-22 (214)
353 2gf9_A RAS-related protein RAB 97.3 0.00014 4.7E-09 49.2 2.9 22 49-70 24-45 (189)
354 2bme_A RAB4A, RAS-related prot 97.3 0.00012 4E-09 49.1 2.6 22 49-70 12-33 (186)
355 3kkq_A RAS-related protein M-R 97.3 0.00014 4.8E-09 48.7 2.9 22 49-70 20-41 (183)
356 3a1s_A Iron(II) transport prot 97.3 0.00016 5.4E-09 52.4 3.3 23 49-71 7-29 (258)
357 1mh1_A RAC1; GTP-binding, GTPa 97.3 0.00015 5.1E-09 48.4 2.9 21 49-69 7-27 (186)
358 1ak2_A Adenylate kinase isoenz 97.3 0.00018 6.3E-09 50.8 3.6 25 46-70 15-39 (233)
359 1zbd_A Rabphilin-3A; G protein 97.3 0.00017 5.8E-09 49.2 3.3 22 49-70 10-31 (203)
360 4edh_A DTMP kinase, thymidylat 97.3 0.00019 6.6E-09 50.8 3.6 28 45-72 4-31 (213)
361 2cjw_A GTP-binding protein GEM 97.3 0.00015 5.1E-09 49.6 2.9 21 49-69 8-28 (192)
362 3i8s_A Ferrous iron transport 97.3 0.00014 4.8E-09 53.0 2.9 23 49-71 5-27 (274)
363 1m7b_A RND3/RHOE small GTP-bin 97.3 0.00013 4.4E-09 49.2 2.6 22 49-70 9-30 (184)
364 2gf0_A GTP-binding protein DI- 97.3 0.00013 4.5E-09 49.4 2.6 22 48-69 9-30 (199)
365 3a8t_A Adenylate isopentenyltr 97.3 0.00023 7.7E-09 54.1 4.1 27 45-71 38-64 (339)
366 1z06_A RAS-related protein RAB 97.3 0.00016 5.5E-09 48.9 3.0 22 49-70 22-43 (189)
367 2fg5_A RAB-22B, RAS-related pr 97.3 0.00014 4.7E-09 49.5 2.6 22 49-70 25-46 (192)
368 2wsm_A Hydrogenase expression/ 97.3 0.00013 4.5E-09 50.6 2.6 24 47-70 30-53 (221)
369 2il1_A RAB12; G-protein, GDP, 97.2 0.00016 5.4E-09 49.3 2.9 22 49-70 28-49 (192)
370 4bas_A ADP-ribosylation factor 97.2 0.00016 5.6E-09 48.9 2.9 23 48-70 18-40 (199)
371 2qu8_A Putative nucleolar GTP- 97.2 0.00017 5.7E-09 50.6 3.0 23 48-70 30-52 (228)
372 3oes_A GTPase rhebl1; small GT 97.2 0.00014 4.9E-09 49.8 2.6 24 48-71 25-48 (201)
373 2a5j_A RAS-related protein RAB 97.2 0.00017 5.9E-09 48.9 3.0 22 49-70 23-44 (191)
374 3d3q_A TRNA delta(2)-isopenten 97.2 0.00017 5.9E-09 54.7 3.2 25 48-72 8-32 (340)
375 3zvl_A Bifunctional polynucleo 97.2 0.00017 5.9E-09 55.6 3.3 26 45-70 256-281 (416)
376 3bwd_D RAC-like GTP-binding pr 97.2 0.00018 6.1E-09 47.9 2.9 23 48-70 9-31 (182)
377 3t5g_A GTP-binding protein RHE 97.2 0.00015 5.2E-09 48.4 2.6 21 49-69 8-28 (181)
378 1jwy_B Dynamin A GTPase domain 97.2 0.00016 5.5E-09 53.0 2.9 23 49-71 26-48 (315)
379 2i1q_A DNA repair and recombin 97.2 0.00021 7.3E-09 52.9 3.6 27 43-69 94-120 (322)
380 1zj6_A ADP-ribosylation factor 97.2 0.00018 6E-09 48.6 2.9 24 47-70 16-39 (187)
381 3reg_A RHO-like small GTPase; 97.2 0.00018 6.2E-09 48.8 2.9 22 49-70 25-46 (194)
382 2f7s_A C25KG, RAS-related prot 97.2 0.00021 7.3E-09 49.3 3.3 23 49-71 27-49 (217)
383 1x3s_A RAS-related protein RAB 97.2 0.00018 6.3E-09 48.4 2.9 22 49-70 17-38 (195)
384 2h57_A ADP-ribosylation factor 97.2 0.00012 4.3E-09 49.5 2.0 23 49-71 23-45 (190)
385 3dz8_A RAS-related protein RAB 97.2 0.00016 5.4E-09 49.1 2.6 23 49-71 25-47 (191)
386 2o52_A RAS-related protein RAB 97.2 0.00018 6.2E-09 49.3 2.9 22 49-70 27-48 (200)
387 3v9p_A DTMP kinase, thymidylat 97.2 0.00016 5.5E-09 51.8 2.7 28 44-71 22-49 (227)
388 2ocp_A DGK, deoxyguanosine kin 97.2 0.00022 7.4E-09 50.7 3.3 26 46-71 1-26 (241)
389 2h92_A Cytidylate kinase; ross 97.2 0.00018 6.2E-09 50.0 2.8 25 47-71 3-27 (219)
390 1zd9_A ADP-ribosylation factor 97.2 0.0002 6.7E-09 48.5 2.9 22 49-70 24-45 (188)
391 2atv_A RERG, RAS-like estrogen 97.2 0.0002 6.8E-09 48.7 3.0 23 48-70 29-51 (196)
392 2ew1_A RAS-related protein RAB 97.2 0.00016 5.6E-09 50.0 2.6 22 49-70 28-49 (201)
393 3cph_A RAS-related protein SEC 97.2 0.0002 6.7E-09 49.1 2.9 24 47-70 20-43 (213)
394 2iwr_A Centaurin gamma 1; ANK 97.2 0.00016 5.3E-09 48.2 2.4 22 49-70 9-30 (178)
395 2p5s_A RAS and EF-hand domain 97.2 0.0002 6.9E-09 48.9 3.0 25 46-70 27-51 (199)
396 2h17_A ADP-ribosylation factor 97.2 0.00016 5.6E-09 48.6 2.4 22 49-70 23-44 (181)
397 3h4m_A Proteasome-activating n 97.2 0.00019 6.4E-09 51.8 2.8 29 44-72 48-76 (285)
398 2q3h_A RAS homolog gene family 97.2 0.00024 8.2E-09 48.4 3.3 24 47-70 20-43 (201)
399 2p65_A Hypothetical protein PF 97.2 0.0002 6.9E-09 47.7 2.8 27 45-71 41-67 (187)
400 2bcg_Y Protein YP2, GTP-bindin 97.2 0.00018 6.1E-09 49.3 2.6 22 49-70 10-31 (206)
401 1sky_E F1-ATPase, F1-ATP synth 97.2 0.00024 8.3E-09 56.1 3.6 31 42-72 146-176 (473)
402 3lv8_A DTMP kinase, thymidylat 97.2 0.00022 7.6E-09 51.3 3.1 26 46-71 26-51 (236)
403 2zts_A Putative uncharacterize 97.2 0.00032 1.1E-08 49.2 3.9 26 43-68 26-51 (251)
404 3llu_A RAS-related GTP-binding 97.2 0.00022 7.5E-09 48.7 2.9 23 49-71 22-44 (196)
405 3cnl_A YLQF, putative uncharac 97.2 0.00025 8.4E-09 51.7 3.2 29 48-76 100-128 (262)
406 1l8q_A Chromosomal replication 97.2 0.00016 5.6E-09 53.3 2.3 27 46-72 36-62 (324)
407 2fh5_B SR-beta, signal recogni 97.2 0.00023 7.9E-09 49.0 2.9 23 48-70 8-30 (214)
408 3c5c_A RAS-like protein 12; GD 97.2 0.00024 8.3E-09 48.2 3.0 22 49-70 23-44 (187)
409 2fv8_A H6, RHO-related GTP-bin 97.2 0.0002 6.9E-09 49.3 2.6 22 49-70 27-48 (207)
410 2j1l_A RHO-related GTP-binding 97.1 0.00023 8E-09 49.3 2.9 22 49-70 36-57 (214)
411 2aka_B Dynamin-1; fusion prote 97.1 0.0002 6.7E-09 52.0 2.6 23 49-71 28-50 (299)
412 3exa_A TRNA delta(2)-isopenten 97.1 0.00029 1E-08 53.1 3.6 25 47-71 3-27 (322)
413 1gwn_A RHO-related GTP-binding 97.1 0.00021 7.2E-09 49.5 2.6 22 49-70 30-51 (205)
414 3def_A T7I23.11 protein; chlor 97.1 0.00024 8.3E-09 51.2 2.9 23 49-71 38-60 (262)
415 4tmk_A Protein (thymidylate ki 97.1 0.00028 9.4E-09 50.0 3.1 27 46-72 2-28 (213)
416 1njg_A DNA polymerase III subu 97.1 0.00028 9.6E-09 48.5 3.1 23 49-71 47-69 (250)
417 3umf_A Adenylate kinase; rossm 97.1 0.00031 1.1E-08 50.0 3.4 27 43-69 25-51 (217)
418 3bh0_A DNAB-like replicative h 97.1 0.00028 9.5E-09 52.5 3.3 34 36-69 57-90 (315)
419 2fu5_C RAS-related protein RAB 97.1 0.00016 5.6E-09 48.3 1.8 22 49-70 10-31 (183)
420 3ld9_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 50.0 3.6 27 45-71 19-45 (223)
421 1h65_A Chloroplast outer envel 97.1 0.00025 8.5E-09 51.3 2.9 23 49-71 41-63 (270)
422 3crm_A TRNA delta(2)-isopenten 97.1 0.00028 9.7E-09 53.2 3.2 24 48-71 6-29 (323)
423 4dcu_A GTP-binding protein ENG 97.1 0.00021 7.2E-09 55.6 2.6 23 48-70 24-46 (456)
424 1p5z_B DCK, deoxycytidine kina 97.1 0.00018 6.1E-09 51.8 2.0 27 45-71 22-48 (263)
425 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00032 1.1E-08 49.8 3.2 27 45-71 37-63 (262)
426 2gco_A H9, RHO-related GTP-bin 97.1 0.00025 8.4E-09 48.6 2.6 22 49-70 27-48 (201)
427 2g3y_A GTP-binding protein GEM 97.1 0.00034 1.2E-08 49.1 3.3 22 49-70 39-60 (211)
428 1sxj_D Activator 1 41 kDa subu 97.1 4.4E-05 1.5E-09 56.5 -1.5 38 34-71 43-82 (353)
429 2b6h_A ADP-ribosylation factor 97.1 0.00025 8.6E-09 48.4 2.5 24 47-70 29-52 (192)
430 2hf9_A Probable hydrogenase ni 97.1 0.00026 8.9E-09 49.2 2.6 23 48-70 39-61 (226)
431 3tmk_A Thymidylate kinase; pho 97.1 0.00033 1.1E-08 49.8 3.1 29 45-73 3-31 (216)
432 2atx_A Small GTP binding prote 97.1 0.00028 9.6E-09 47.8 2.6 22 49-70 20-41 (194)
433 1ypw_A Transitional endoplasmi 97.1 7.7E-05 2.6E-09 62.2 -0.4 42 41-84 505-546 (806)
434 4djt_A GTP-binding nuclear pro 97.0 0.00014 4.7E-09 50.3 0.7 22 49-70 13-34 (218)
435 1u94_A RECA protein, recombina 97.0 0.0005 1.7E-08 52.3 3.8 28 43-70 59-86 (356)
436 2z4s_A Chromosomal replication 97.0 0.00031 1.1E-08 54.6 2.6 25 47-71 130-154 (440)
437 2yc2_C IFT27, small RAB-relate 97.0 0.00016 5.3E-09 49.3 0.8 22 49-70 22-43 (208)
438 3cpj_B GTP-binding protein YPT 97.0 0.00042 1.4E-08 48.2 3.0 22 49-70 15-36 (223)
439 2hup_A RAS-related protein RAB 97.0 0.00036 1.2E-08 47.9 2.6 22 49-70 31-52 (201)
440 4gzl_A RAS-related C3 botulinu 97.0 0.00037 1.3E-08 47.9 2.6 22 48-69 31-52 (204)
441 3q3j_B RHO-related GTP-binding 97.0 0.00044 1.5E-08 48.0 2.9 23 48-70 28-50 (214)
442 3foz_A TRNA delta(2)-isopenten 96.9 0.00058 2E-08 51.3 3.6 25 47-71 10-34 (316)
443 2x77_A ADP-ribosylation factor 96.9 0.00025 8.6E-09 47.8 1.5 23 47-69 22-44 (189)
444 3sr0_A Adenylate kinase; phosp 96.9 0.00054 1.9E-08 48.2 3.2 22 49-70 2-23 (206)
445 3tqf_A HPR(Ser) kinase; transf 96.9 0.0013 4.4E-08 45.7 4.9 33 36-69 6-38 (181)
446 3n70_A Transport activator; si 96.9 0.0007 2.4E-08 44.5 3.4 27 46-72 23-49 (145)
447 2j0v_A RAC-like GTP-binding pr 96.9 0.00048 1.7E-08 47.3 2.6 22 49-70 11-32 (212)
448 3dm5_A SRP54, signal recogniti 96.9 0.00046 1.6E-08 54.1 2.5 34 46-79 99-132 (443)
449 2v1u_A Cell division control p 96.9 0.00047 1.6E-08 51.2 2.5 27 45-71 42-68 (387)
450 4a1f_A DNAB helicase, replicat 96.8 0.00035 1.2E-08 52.9 1.7 49 36-84 35-83 (338)
451 2chg_A Replication factor C sm 96.8 0.00065 2.2E-08 46.2 2.9 22 49-70 40-61 (226)
452 3eph_A TRNA isopentenyltransfe 96.8 0.00068 2.3E-08 52.6 3.2 24 48-71 3-26 (409)
453 2r62_A Cell division protease 96.8 0.00025 8.6E-09 50.7 0.6 28 41-70 40-67 (268)
454 3r7w_A Gtpase1, GTP-binding pr 96.8 0.00077 2.6E-08 49.8 3.2 24 47-70 3-26 (307)
455 2hjg_A GTP-binding protein ENG 96.8 0.00058 2E-08 52.8 2.6 22 49-70 5-26 (436)
456 3syl_A Protein CBBX; photosynt 96.8 0.00078 2.7E-08 49.0 3.2 27 45-71 65-91 (309)
457 2orw_A Thymidine kinase; TMTK, 96.8 0.00084 2.9E-08 46.2 3.1 23 46-68 2-25 (184)
458 1wxq_A GTP-binding protein; st 96.8 0.00073 2.5E-08 52.0 2.9 23 49-71 2-24 (397)
459 2q6t_A DNAB replication FORK h 96.8 0.00067 2.3E-08 52.6 2.8 36 36-71 189-224 (444)
460 1lnz_A SPO0B-associated GTP-bi 96.8 0.00089 3E-08 50.6 3.4 33 38-70 149-181 (342)
461 1puj_A YLQF, conserved hypothe 96.8 0.0011 3.8E-08 48.7 3.8 26 47-72 120-145 (282)
462 4hlc_A DTMP kinase, thymidylat 96.8 0.001 3.5E-08 46.6 3.5 26 47-72 2-27 (205)
463 3p32_A Probable GTPase RV1496/ 96.7 0.00092 3.1E-08 50.4 3.4 26 46-71 78-103 (355)
464 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0011 3.6E-08 50.2 3.4 28 42-69 118-145 (331)
465 1d2n_A N-ethylmaleimide-sensit 96.7 0.00095 3.2E-08 48.0 3.0 26 45-70 62-87 (272)
466 3th5_A RAS-related C3 botulinu 95.7 0.00026 8.9E-09 48.4 0.0 22 48-69 31-52 (204)
467 2xau_A PRE-mRNA-splicing facto 96.7 0.0003 1E-08 58.4 0.3 30 44-73 106-135 (773)
468 1ofh_A ATP-dependent HSL prote 96.7 0.00098 3.4E-08 48.2 3.0 25 47-71 50-74 (310)
469 3hws_A ATP-dependent CLP prote 96.7 0.00096 3.3E-08 50.1 3.0 26 46-71 50-75 (363)
470 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0012 4E-08 49.2 3.4 27 45-71 43-69 (322)
471 1x6v_B Bifunctional 3'-phospho 96.7 0.0012 4E-08 53.9 3.6 26 46-71 51-76 (630)
472 3ec1_A YQEH GTPase; atnos1, at 96.6 0.00087 3E-08 51.0 2.6 25 46-70 161-185 (369)
473 2x2e_A Dynamin-1; nitration, h 96.6 0.00063 2.1E-08 51.2 1.8 23 49-71 33-55 (353)
474 2bjv_A PSP operon transcriptio 96.6 0.0016 5.4E-08 46.6 3.8 28 46-73 28-55 (265)
475 2qgz_A Helicase loader, putati 96.6 0.0013 4.5E-08 48.7 3.4 25 47-71 152-176 (308)
476 3gj0_A GTP-binding nuclear pro 96.6 0.00062 2.1E-08 47.2 1.6 21 49-69 17-38 (221)
477 1g8f_A Sulfate adenylyltransfe 96.6 0.0011 3.7E-08 52.8 3.1 28 45-72 393-420 (511)
478 3gmt_A Adenylate kinase; ssgci 96.6 0.0013 4.4E-08 47.3 3.2 22 48-69 9-30 (230)
479 3uk6_A RUVB-like 2; hexameric 96.6 0.0012 3.9E-08 49.2 3.1 28 45-72 68-95 (368)
480 3d8b_A Fidgetin-like protein 1 96.6 0.0013 4.6E-08 49.4 3.4 27 45-71 115-141 (357)
481 1m8p_A Sulfate adenylyltransfe 96.6 0.0013 4.4E-08 53.0 3.4 26 46-71 395-420 (573)
482 2qby_B CDC6 homolog 3, cell di 96.6 0.0013 4.3E-08 49.1 3.2 26 46-71 44-69 (384)
483 2qpt_A EH domain-containing pr 96.6 0.00096 3.3E-08 53.4 2.6 25 47-71 65-89 (550)
484 3eie_A Vacuolar protein sortin 96.6 0.0015 5.1E-08 48.4 3.4 26 46-71 50-75 (322)
485 3t15_A Ribulose bisphosphate c 96.6 0.0012 3.9E-08 48.5 2.8 26 46-71 35-60 (293)
486 3geh_A MNME, tRNA modification 96.6 0.00085 2.9E-08 52.7 2.1 25 46-70 223-247 (462)
487 3pvs_A Replication-associated 96.5 0.0013 4.3E-08 51.4 3.0 37 38-74 39-77 (447)
488 1xp8_A RECA protein, recombina 96.5 0.0016 5.3E-08 49.7 3.4 27 43-69 70-96 (366)
489 3sjy_A Translation initiation 96.5 0.0015 5E-08 50.0 3.3 23 49-71 10-32 (403)
490 2v3c_C SRP54, signal recogniti 96.5 0.00074 2.5E-08 52.6 1.6 25 48-72 100-124 (432)
491 3l0i_B RAS-related protein RAB 96.5 0.00017 5.9E-09 49.3 -1.9 22 49-70 35-56 (199)
492 2qen_A Walker-type ATPase; unk 96.5 0.0017 5.7E-08 47.5 3.4 24 47-70 31-54 (350)
493 3pfi_A Holliday junction ATP-d 96.5 0.0015 5E-08 48.2 2.9 24 48-71 56-79 (338)
494 3h2y_A GTPase family protein; 96.5 0.00099 3.4E-08 50.7 2.0 25 46-70 159-183 (368)
495 4a9a_A Ribosome-interacting GT 96.5 0.0016 5.5E-08 49.9 3.1 36 49-84 74-120 (376)
496 2r44_A Uncharacterized protein 96.5 0.0015 5.3E-08 48.1 2.9 29 44-72 43-71 (331)
497 1um8_A ATP-dependent CLP prote 96.5 0.0016 5.4E-08 49.1 3.0 25 47-71 72-96 (376)
498 1knx_A Probable HPR(Ser) kinas 96.5 0.0044 1.5E-07 46.4 5.3 37 32-69 133-169 (312)
499 2hjg_A GTP-binding protein ENG 96.4 0.0018 6.1E-08 50.0 3.3 24 48-71 176-199 (436)
500 1f5n_A Interferon-induced guan 96.4 0.0013 4.4E-08 53.3 2.5 25 47-71 38-62 (592)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=6.4e-31 Score=202.96 Aligned_cols=96 Identities=26% Similarity=0.529 Sum_probs=90.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q 98 (121)
+|+++|++++|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 4899999999999999999999999999999999999999999999999999999999999999863 34577999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+||++||+||+.|+.
T Consensus 83 ~~~l~p~ltV~eni~~~~ 100 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGL 100 (381)
T ss_dssp TCCCCTTSCHHHHHTHHH
T ss_pred CCcCCCCCCHHHHHHHHH
Confidence 999999999999999875
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=4.9e-31 Score=202.30 Aligned_cols=97 Identities=38% Similarity=0.719 Sum_probs=90.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC----C--hhhcccEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL----N--KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~----~--~~~~~~i~ 94 (121)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++ . ...++.++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 58999999999999999999999999999999999999999999999999999999999999987 2 13467899
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||||++.+||++||+||+.|+..
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~ 106 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLG 106 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTST
T ss_pred EEeCCCcCCCCCCHHHHHHHHHH
Confidence 99999999999999999999763
No 3
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.5e-30 Score=191.94 Aligned_cols=95 Identities=24% Similarity=0.428 Sum_probs=88.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--------------
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-------------- 86 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-------------- 86 (121)
+|+++|++++|+++++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 499999999999889999999999999999999999999999999999999999999999999874
Q ss_pred ---hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 87 ---KRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 87 ---~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
..+++.++||+|++.+++.+||+||+.++
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 117 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 117 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhh
Confidence 12456799999999999999999999885
No 4
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=3.6e-30 Score=187.66 Aligned_cols=96 Identities=28% Similarity=0.417 Sum_probs=88.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h-hcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R-WKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~-~~~~i~~ 95 (121)
+++++|++++|+++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. . .++.++|
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 85 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEE
Confidence 5999999999998899999999999999999999999999999999999999999999999999852 2 2456999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|+|++.+++.+|++||+.++.
T Consensus 86 v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 86 VPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGG
T ss_pred EecCCccCCCCcHHHHHHHhh
Confidence 999999999999999999864
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=2.6e-30 Score=186.77 Aligned_cols=96 Identities=30% Similarity=0.408 Sum_probs=88.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hh-ccc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RW-KRK 92 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~-~~~ 92 (121)
+++++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+ ++.
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 5999999999998899999999999999999999999999999999999999999999999998742 12 267
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++||+|++.+++.+||+||+.++.
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~ 107 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPM 107 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHhHH
Confidence 999999999999999999998754
No 6
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=3.7e-30 Score=197.46 Aligned_cols=96 Identities=33% Similarity=0.479 Sum_probs=89.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q 98 (121)
+++++|++++|+++++|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 4899999999998899999999999999999999999999999999999999999999999999853 34578999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+|+++||+||+.|+.
T Consensus 83 ~~~l~~~ltv~eni~~~~ 100 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPL 100 (359)
T ss_dssp SCCCCTTSCHHHHHHGGG
T ss_pred CcccCCCCCHHHHHHHHH
Confidence 999999999999999975
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=2.3e-30 Score=191.33 Aligned_cols=95 Identities=26% Similarity=0.497 Sum_probs=88.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i~ 94 (121)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+++.++
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 599999999999889999999999999999999999999999999999999999999999999873 13456799
Q ss_pred EEeeCCCCCCCCCHHHHHhhc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
||+|++.+++.+||+||+.++
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~ 124 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLA 124 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHH
T ss_pred EEeCCCcCCCCCCHHHHHHHH
Confidence 999999999999999999885
No 8
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.97 E-value=3.9e-30 Score=185.11 Aligned_cols=95 Identities=28% Similarity=0.436 Sum_probs=88.7
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
.+|+++|++++|++ ++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.++. .+++.++||+|+
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-~~~~~i~~v~q~ 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-KVKGKIFFLPEE 86 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-GGGGGEEEECSS
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-hhcCcEEEEeCC
Confidence 36999999999988 9999999999999999999999999999999999999999999999999875 456789999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+|++||+.++.
T Consensus 87 ~~~~~~~tv~enl~~~~ 103 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVA 103 (214)
T ss_dssp CCCCTTSBHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHH
Confidence 99999999999998853
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=5.1e-30 Score=196.47 Aligned_cols=98 Identities=26% Similarity=0.481 Sum_probs=91.0
Q ss_pred ccEEEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEE
Q psy16345 19 PLELVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICY 95 (121)
Q Consensus 19 ~~~i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~ 95 (121)
..+|+++|++++| +++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++|
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4569999999999 88889999999999999999999999999999999999999999999999999853 44678999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|||++.+|+++||+||+.|+.
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l 112 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGL 112 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHH
Confidence 999999999999999999865
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=2.8e-30 Score=187.80 Aligned_cols=96 Identities=30% Similarity=0.452 Sum_probs=86.1
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----h----
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----R---- 88 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~---- 88 (121)
+|+++|++++|++ .++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3789999999963 469999999999999999999999999999999999999999999999998852 1
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
.++.++||||++.+++.+||+||+.++.
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~ 108 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPL 108 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHH
Confidence 2346999999999999999999998753
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5.2e-30 Score=188.73 Aligned_cols=97 Identities=24% Similarity=0.398 Sum_probs=89.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYV 96 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v 96 (121)
.+|+++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+++.++||
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 35999999999998899999999999999999999999999999999999999999999999998852 456789999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+||+||+.+..
T Consensus 94 ~q~~~l~~~ltv~enl~~~~ 113 (256)
T 1vpl_A 94 PEEAGAYRNMQGIEYLRFVA 113 (256)
T ss_dssp CTTCCCCTTSBHHHHHHHHH
T ss_pred cCCCCCCCCCcHHHHHHHHH
Confidence 99999999999999998753
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=5.8e-30 Score=196.57 Aligned_cols=96 Identities=27% Similarity=0.502 Sum_probs=89.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q 98 (121)
+|+++|++++|+++++|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 4899999999988889999999999999999999999999999999999999999999999999853 34578999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+|+++||+||+.|+.
T Consensus 83 ~~~l~~~ltv~eni~~~~ 100 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPL 100 (362)
T ss_dssp TCCCCTTSCHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHH
Confidence 999999999999999864
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=7.5e-30 Score=188.72 Aligned_cols=98 Identities=27% Similarity=0.390 Sum_probs=90.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.+++++|+++.|+++++|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .+++.++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 36999999999999999999999999999999999999999999999999999999999999999862 45667999
Q ss_pred EeeCCCCCCCCCHHHHHhhccc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
++|++.+++.+||+||+.++..
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~ 111 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRA 111 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGT
T ss_pred EecCCccCCCCCHHHHHHhhhh
Confidence 9999998888999999998753
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=5.9e-30 Score=197.15 Aligned_cols=96 Identities=27% Similarity=0.489 Sum_probs=84.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q 98 (121)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 4999999999998889999999999999999999999999999999999999999999999999853 34568999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+|+++||+||+.|+.
T Consensus 91 ~~~l~~~ltv~eni~~~~ 108 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPL 108 (372)
T ss_dssp ------CCCHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHH
Confidence 999999999999999975
No 15
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=5.1e-30 Score=197.04 Aligned_cols=97 Identities=22% Similarity=0.384 Sum_probs=88.7
Q ss_pred cEEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------h
Q psy16345 20 LELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------R 88 (121)
Q Consensus 20 ~~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~ 88 (121)
.+|+++|+++.|+. ..+|++|||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 36999999999953 469999999999999999999999999999999999999999999999999852 2
Q ss_pred hcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 89 WKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+++.++||||++.+++.+||+||+.++.
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~ 130 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPL 130 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHH
Confidence 4678999999999999999999999864
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=7.5e-30 Score=196.55 Aligned_cols=96 Identities=26% Similarity=0.471 Sum_probs=89.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhccc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRK 92 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~ 92 (121)
+|+++|++++|+++++|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5899999999998899999999999999999999999999999999999999999999999988632 23567
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 93 ICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 93 i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
++||||++.+|+++||+||+.|+.
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHH
Confidence 999999999999999999999875
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=2.7e-30 Score=190.02 Aligned_cols=96 Identities=24% Similarity=0.375 Sum_probs=88.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~ 95 (121)
+++++|++++|+++++|+++||++++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+++.++|
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 6999999999998899999999999999999999999999999999999999999999999998852 23567999
Q ss_pred EeeCCCCCCCCCHHHHHhhcc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|+|++.+++.+||+||+.++.
T Consensus 87 v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGG
T ss_pred EccCCccCCCCcHHHHHHHHH
Confidence 999999999999999999864
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=4.9e-30 Score=196.40 Aligned_cols=97 Identities=26% Similarity=0.439 Sum_probs=89.5
Q ss_pred EEEEeeeEEEcCCcc--eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-------hhcc
Q psy16345 21 ELVFSGLSVTLDKRP--ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-------RWKR 91 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~--~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-------~~~~ 91 (121)
+|+++|++++|++++ +|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 489999999998888 9999999999999999999999999999999999999999999999988632 3467
Q ss_pred cEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 92 KICYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 92 ~i~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
.++||||++.+|+++||+||+.|+..
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~ 108 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLT 108 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 89999999999999999999999753
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=5e-30 Score=196.05 Aligned_cols=95 Identities=31% Similarity=0.494 Sum_probs=88.5
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q 98 (121)
+++++|++++|+++ +|+++||++++|++++|+||||||||||||+|+|+++|++|+|.++|+++.. ..++.++||||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 37899999999888 9999999999999999999999999999999999999999999999999853 34668999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+|+++||+||+.|+.
T Consensus 80 ~~~l~~~ltv~enl~~~~ 97 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGM 97 (348)
T ss_dssp TCCCCTTSCHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHH
Confidence 999999999999999875
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=2.4e-29 Score=189.44 Aligned_cols=96 Identities=30% Similarity=0.523 Sum_probs=88.7
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.|+++||+|+|+ ++++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.++.. .+++.++|
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~ 132 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEE
Confidence 599999999995 5789999999999999999999999999999999999999999999999999862 56788999
Q ss_pred EeeCCCCCCCCCHHHHHhhccc
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
|+|++.+|+. ||+||+.++..
T Consensus 133 v~Q~~~lf~~-Tv~eNi~~~~~ 153 (306)
T 3nh6_A 133 VPQDTVLFND-TIADNIRYGRV 153 (306)
T ss_dssp ECSSCCCCSE-EHHHHHHTTST
T ss_pred EecCCccCcc-cHHHHHHhhcc
Confidence 9999999864 99999999864
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=3.4e-29 Score=186.11 Aligned_cols=96 Identities=24% Similarity=0.368 Sum_probs=85.5
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--h----hhcccE
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--K----RWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--~----~~~~~i 93 (121)
+|+++|++++|++ ..+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. . .+++.+
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 6999999999975 45999999999999999999999999999999999999999999999999983 1 356789
Q ss_pred EEEeeCCC-CCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDI-FFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~-l~~~ltv~e~l~~~~ 116 (121)
+||||++. .++.+||+||+.++.
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~ 110 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGA 110 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHH
T ss_pred EEEEcCcccccccCcHHHHHHHHH
Confidence 99999873 334689999999865
No 22
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=3.7e-29 Score=183.17 Aligned_cols=95 Identities=21% Similarity=0.427 Sum_probs=86.5
Q ss_pred EEEEeeeEEEc--CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~--~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.|+++|++++| +++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+++.++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 46789999999999999999999999999999999999999999999999999852 3567899
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
||+|++.+++ .|++||+.++.
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~ 107 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLAN 107 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTC
T ss_pred EEeCCCcccc-ccHHHHHhccC
Confidence 9999998886 59999999864
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=2.5e-29 Score=187.10 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=86.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC------hhhcccE
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN------KRWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~------~~~~~~i 93 (121)
++++++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+++.+
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 4699999999999889999999999999999999999999999999999999999999999998774 2456789
Q ss_pred EEEeeCCCCC--CCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFF--PELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~--~~ltv~e~l~~~~ 116 (121)
+||+|++.++ +.+||+||+.++.
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~ 124 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGA 124 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred EEEEcCcccccCCCCCHHHHHHhhh
Confidence 9999997543 3569999998853
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=5.5e-29 Score=184.45 Aligned_cols=95 Identities=22% Similarity=0.401 Sum_probs=87.1
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i 93 (121)
+|+++|++++|++ +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+++++
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 5999999999976 789999999999999999999999999999999999999999999999998742 356679
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+||+|++.+++ .||+||+.++.
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~ 117 (271)
T 2ixe_A 96 AAVGQEPLLFG-RSFRENIAYGL 117 (271)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTC
T ss_pred EEEecCCcccc-ccHHHHHhhhc
Confidence 99999998887 49999999865
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=2.1e-29 Score=183.81 Aligned_cols=93 Identities=27% Similarity=0.512 Sum_probs=85.8
Q ss_pred EEEeeeEEEc-CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEE
Q psy16345 22 LVFSGLSVTL-DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYV 96 (121)
Q Consensus 22 i~~~~l~~~~-~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v 96 (121)
++++|++++| +++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .++++++||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 7899999999 66789999999999999999999999999999999999999999999999998752 356789999
Q ss_pred eeCCCCCCCCCHHHHHhhc
Q psy16345 97 LQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++.+++. |++||+.++
T Consensus 82 ~q~~~l~~~-tv~enl~~~ 99 (243)
T 1mv5_A 82 SQDSAIMAG-TIRENLTYG 99 (243)
T ss_dssp CCSSCCCCE-EHHHHTTSC
T ss_pred cCCCccccc-cHHHHHhhh
Confidence 999988874 999999986
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=1.3e-28 Score=181.94 Aligned_cols=96 Identities=27% Similarity=0.366 Sum_probs=86.4
Q ss_pred EEEEeeeEEEcC--C---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEE
Q psy16345 21 ELVFSGLSVTLD--K---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~--~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~ 94 (121)
+++++|++++|+ + +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .+++.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 489999999997 4 579999999999999999999999999999999999999999999999998864 4567899
Q ss_pred EEeeCC-CCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQD-IFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~-~l~~~ltv~e~l~~~~ 116 (121)
||+|++ .+++.+|++||+.++.
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~ 104 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAV 104 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTT
T ss_pred EEeccchhhcCCCcHHHHHHHHH
Confidence 999996 4566789999999864
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=9.8e-29 Score=181.02 Aligned_cols=96 Identities=32% Similarity=0.500 Sum_probs=86.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--CCCCccEEEECCEeCCh----h-hcccE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKERLNK----R-WKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~----~-~~~~i 93 (121)
+++++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.++|+++.. . .+..+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999998 78999999999999752 2 24468
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++|++.+++.+|++||+.++.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~ 105 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLAL 105 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHH
Confidence 99999999999999999998753
No 28
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=1.9e-28 Score=178.85 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=84.7
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--hhcccEEEEeeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--RWKRKICYVLQQ 99 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~ 99 (121)
++++|++++|++ +|+++||++++ ++++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++++||+|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 789999999975 59999999999 9999999999999999999999999999999999998853 345679999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+|++||+.++.
T Consensus 79 ~~l~~~ltv~enl~~~~ 95 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGL 95 (240)
T ss_dssp CCCCTTSCHHHHHHTTC
T ss_pred CccCCCCcHHHHHHHHH
Confidence 99999999999999864
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=3.7e-28 Score=179.62 Aligned_cols=95 Identities=31% Similarity=0.494 Sum_probs=85.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--CCCCccEEEECCEeCCh----hh-cccE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--VKLDSGVIRLNKERLNK----RW-KRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--~~~~~G~i~~~g~~~~~----~~-~~~i 93 (121)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.++|+++.. .+ ++.+
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 59999999999888999999999999999999999999999999999999 46899999999998742 22 3459
Q ss_pred EEEeeCCCCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+||+|++.+++.+|+.+|+.+.
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~ 121 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTA 121 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHH
T ss_pred EEEccCccccccccHHHHHHHH
Confidence 9999999999999999998764
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=1.2e-27 Score=175.69 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=81.5
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
+++++|++++|+ ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|. +++.++||+|+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---------~~~~i~~v~q~ 74 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE---------VYQSIGFVPQF 74 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE---------ECSCEEEECSC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---------EeccEEEEcCC
Confidence 599999999998 88899999999999999999999999999999999999999999998 24579999999
Q ss_pred CCCCCCCCHHHHHhhcc
Q psy16345 100 DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~~ 116 (121)
+.+++.+||+||+.++.
T Consensus 75 ~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 75 FSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp CCCSSCCBHHHHHHGGG
T ss_pred CccCCCCCHHHHHHHhh
Confidence 99988899999999864
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=1.2e-27 Score=173.17 Aligned_cols=86 Identities=29% Similarity=0.557 Sum_probs=80.5
Q ss_pred EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
+++++|++++|+ ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++| +++|++|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------~i~~v~q 76 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RISFCSQ 76 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------CEEEECS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------EEEEEec
Confidence 699999999995 47899999999999999999999999999999999999999999999987 5999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+++. |++||+.++.
T Consensus 77 ~~~~~~~-tv~enl~~~~ 93 (229)
T 2pze_A 77 FSWIMPG-TIKENIIFGV 93 (229)
T ss_dssp SCCCCSB-CHHHHHHTTS
T ss_pred CCcccCC-CHHHHhhccC
Confidence 9998886 9999999864
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=7.9e-28 Score=177.22 Aligned_cols=94 Identities=24% Similarity=0.359 Sum_probs=84.9
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i 93 (121)
+|+++|++++|++ +++|+++||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.++.. .+++.+
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 5999999999975 4699999999999999999999999999999999999987 8999999998742 456789
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+||+|++.+++ .|++||+.++.
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~ 117 (260)
T 2ghi_A 96 GIVPQDTILFN-ETIKYNILYGK 117 (260)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTC
T ss_pred EEEcCCCcccc-cCHHHHHhccC
Confidence 99999999886 59999999864
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=1.7e-27 Score=174.70 Aligned_cols=91 Identities=26% Similarity=0.389 Sum_probs=83.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKICYV 96 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~~v 96 (121)
+++++|++++ ++|+++||++++|++++|+||||||||||+|+|+|+++|+ |+|.++|+++. ..+++.++||
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 5899999986 6999999999999999999999999999999999999999 99999999874 2456679999
Q ss_pred eeCCCCCCCCCHHHHHhhcc
Q psy16345 97 LQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 97 ~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++.+++.+|++||+.++.
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~ 98 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQ 98 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTC
T ss_pred CCCCccCCCCcHHHHHHHhh
Confidence 99999998899999999863
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.2e-27 Score=183.76 Aligned_cols=94 Identities=22% Similarity=0.475 Sum_probs=85.4
Q ss_pred cEEEEeeeEEEc--CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccE
Q psy16345 20 LELVFSGLSVTL--DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~--~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i 93 (121)
..|+++||+++| +++.+|+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. .+++.+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 359999999999 66789999999999999999999999999999999999998 89999999998852 456789
Q ss_pred EEEeeCCCCCCCCCHHHHHhhc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+||||++.+|+ +||+||+.+.
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~ 117 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPN 117 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTT
T ss_pred EEEcCCcccCc-cCHHHHhhhc
Confidence 99999999987 5999999753
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=172.15 Aligned_cols=86 Identities=26% Similarity=0.461 Sum_probs=79.6
Q ss_pred EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
+++++|++++|+ ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++| .++||+|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------~i~~v~Q 73 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------SVAYVPQ 73 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---------CEEEECS
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---------EEEEEcC
Confidence 489999999997 47899999999999999999999999999999999999999999999997 4999999
Q ss_pred CCCCCCCCCHHHHHhhcc
Q psy16345 99 QDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~~ 116 (121)
++.+ +.+|++||+.++.
T Consensus 74 ~~~~-~~~tv~enl~~~~ 90 (237)
T 2cbz_A 74 QAWI-QNDSLRENILFGC 90 (237)
T ss_dssp SCCC-CSEEHHHHHHTTS
T ss_pred CCcC-CCcCHHHHhhCcc
Confidence 9875 4779999999864
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.94 E-value=6.5e-27 Score=188.24 Aligned_cols=96 Identities=26% Similarity=0.400 Sum_probs=88.4
Q ss_pred cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
..++++|++++|++ +++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. +.+++++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 35999999999974 68999999999999999999999999999999999999999999999999875 2567889
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+||+|++.+|+. |++||+.++.
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~ 441 (582)
T 3b5x_A 420 ALVSQNVHLFND-TIANNIAYAA 441 (582)
T ss_pred EEEcCCCccccc-cHHHHHhccC
Confidence 999999999875 9999999875
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.94 E-value=6e-27 Score=188.39 Aligned_cols=97 Identities=27% Similarity=0.474 Sum_probs=89.2
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ .++++++
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 418 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 5999999999964 579999999999999999999999999999999999999999999999999863 5678899
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
||+|++.+|+. |++||+.++.+.
T Consensus 419 ~v~Q~~~l~~~-tv~eni~~~~~~ 441 (578)
T 4a82_A 419 LVQQDNILFSD-TVKENILLGRPT 441 (578)
T ss_dssp EECSSCCCCSS-BHHHHHGGGCSS
T ss_pred EEeCCCccCcc-cHHHHHhcCCCC
Confidence 99999999976 999999998654
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.94 E-value=6.8e-27 Score=188.14 Aligned_cols=95 Identities=22% Similarity=0.419 Sum_probs=87.9
Q ss_pred EEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.++++|++++|++ +++|+++||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.+ .++++++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence 5999999999973 689999999999999999999999999999999999999999999999999852 4677899
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
||+|++.+|+. |++||+.++.
T Consensus 421 ~v~Q~~~l~~~-tv~eni~~~~ 441 (582)
T 3b60_A 421 LVSQNVHLFND-TVANNIAYAR 441 (582)
T ss_dssp EECSSCCCCSS-BHHHHHHTTT
T ss_pred EEccCCcCCCC-CHHHHHhccC
Confidence 99999999875 9999999875
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=7.6e-27 Score=188.23 Aligned_cols=97 Identities=27% Similarity=0.494 Sum_probs=88.9
Q ss_pred EEEEeeeEEEcC--CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 21 ELVFSGLSVTLD--KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~--~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
.++++|++++|+ ++++|+++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ .++++++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 420 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheE
Confidence 599999999994 4679999999999999999999999999999999999999999999999999852 5678899
Q ss_pred EEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
||+|++.+|+. |++||+.++.+.
T Consensus 421 ~v~Q~~~lf~~-tv~eni~~~~~~ 443 (587)
T 3qf4_A 421 AVPQETVLFSG-TIKENLKWGRED 443 (587)
T ss_dssp EECSSCCCCSE-EHHHHHTTTCSS
T ss_pred EECCCCcCcCc-cHHHHHhccCCC
Confidence 99999999876 999999988653
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1e-26 Score=187.77 Aligned_cols=97 Identities=34% Similarity=0.588 Sum_probs=88.9
Q ss_pred EEEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEE
Q psy16345 21 ELVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICY 95 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~ 95 (121)
.++++|++++|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.+ .++++++|
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 5999999999964 679999999999999999999999999999999999999999999999999863 56788999
Q ss_pred EeeCCCCCCCCCHHHHHhhcccC
Q psy16345 96 VLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 96 v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
|+|++.+|+. |++||+.++.+.
T Consensus 434 v~Q~~~lf~~-tv~eni~~~~~~ 455 (598)
T 3qf4_B 434 VLQDTILFST-TVKENLKYGNPG 455 (598)
T ss_dssp ECTTCCCCSS-BHHHHHHSSSTT
T ss_pred EeCCCccccc-cHHHHHhcCCCC
Confidence 9999999865 999999997643
No 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=8.7e-27 Score=172.14 Aligned_cols=92 Identities=26% Similarity=0.361 Sum_probs=82.7
Q ss_pred EEEEeeeEEEcCC----cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEE-
Q psy16345 21 ELVFSGLSVTLDK----RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKIC- 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~----~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~- 94 (121)
+++++|++++|++ +++|+++||+++ |++++|+||||||||||+|+|+|++ |++|+|.++|.++.. ..+++++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 3789999999976 789999999999 9999999999999999999999999 999999999988742 1256799
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
||+|++.+ .+|++||+.++.
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~ 98 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYE 98 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhh
Confidence 99999887 789999998754
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.94 E-value=1.5e-26 Score=186.45 Aligned_cols=95 Identities=28% Similarity=0.451 Sum_probs=87.4
Q ss_pred EEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEE
Q psy16345 22 LVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKIC 94 (121)
Q Consensus 22 i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~ 94 (121)
++++|++++|++ +++|+++||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+ .++++++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 999999999964 469999999999999999999999999999999999999999999999999852 4677899
Q ss_pred EEeeCCCCCCCCCHHHHHhhccc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
||+|++.+|+. |++||+.++.+
T Consensus 422 ~v~Q~~~l~~~-tv~eni~~~~~ 443 (595)
T 2yl4_A 422 TVSQEPILFSC-SIAENIAYGAD 443 (595)
T ss_dssp EECSSCCCCSS-BHHHHHHTTSS
T ss_pred EEccCCcccCC-CHHHHHhhcCC
Confidence 99999999875 99999999764
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=4.2e-26 Score=196.98 Aligned_cols=96 Identities=26% Similarity=0.463 Sum_probs=89.5
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.|+++||+|+|.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++. +.+|+++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5999999999954 46999999999999999999999999999999999999999999999999997 3689999
Q ss_pred EEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
+||||+|.+|.. |++||+.++.+
T Consensus 1156 ~~V~Qdp~LF~g-TIreNI~~gld 1178 (1321)
T 4f4c_A 1156 AIVSQEPTLFDC-SIAENIIYGLD 1178 (1321)
T ss_dssp EEECSSCCCCSE-EHHHHHSSSSC
T ss_pred EEECCCCEeeCc-cHHHHHhccCC
Confidence 999999999977 99999999863
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=1.5e-25 Score=193.61 Aligned_cols=99 Identities=21% Similarity=0.410 Sum_probs=91.1
Q ss_pred EEEEeeeEEEcC---CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLD---KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~---~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.|+++|++|+|+ ++++|+|+||+|++|+.+||+||||||||||+++|.|+++|++|+|.++|.++. +.+|+++
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 599999999995 357999999999999999999999999999999999999999999999999986 3678899
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccCcC
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIADED 120 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~ 120 (121)
+||+|++.+|.. |++||+.++.++++
T Consensus 495 ~~v~Q~~~Lf~~-TI~eNI~~g~~~~~ 520 (1321)
T 4f4c_A 495 AVVSQEPALFNC-TIEENISLGKEGIT 520 (1321)
T ss_dssp EEECSSCCCCSE-EHHHHHHTTCTTCC
T ss_pred cccCCcceeeCC-chhHHHhhhcccch
Confidence 999999999976 99999999986543
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.92 E-value=5.1e-25 Score=189.87 Aligned_cols=97 Identities=24% Similarity=0.429 Sum_probs=89.1
Q ss_pred EEEEeeeEEEcCC---cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLDK---RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~---~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.|+++|++|+|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++. +.+++++
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 5999999999964 46999999999999999999999999999999999999999999999999985 2567789
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcccC
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIAD 118 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~~ 118 (121)
+||+|++.+|+. |++||+.++.++
T Consensus 467 ~~v~Q~~~l~~~-ti~eNi~~g~~~ 490 (1284)
T 3g5u_A 467 GVVSQEPVLFAT-TIAENIRYGRED 490 (1284)
T ss_dssp EEECSSCCCCSS-CHHHHHHHHCSS
T ss_pred EEEcCCCccCCc-cHHHHHhcCCCC
Confidence 999999999976 999999998753
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.91 E-value=7.1e-25 Score=163.90 Aligned_cols=81 Identities=33% Similarity=0.590 Sum_probs=66.9
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
.++++|+++.+ +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++| +++||+|++
T Consensus 40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---------~i~~v~Q~~ 108 (290)
T 2bbs_A 40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------RISFCSQNS 108 (290)
T ss_dssp ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---------CEEEECSSC
T ss_pred eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------EEEEEeCCC
Confidence 58999999863 6799999999999999999999999999999999999999999999987 599999999
Q ss_pred CCCCCCCHHHHHh
Q psy16345 101 IFFPELTLRQTLE 113 (121)
Q Consensus 101 ~l~~~ltv~e~l~ 113 (121)
.+++. |++||+.
T Consensus 109 ~l~~~-tv~enl~ 120 (290)
T 2bbs_A 109 WIMPG-TIKENII 120 (290)
T ss_dssp CCCSS-BHHHHHH
T ss_pred ccCcc-cHHHHhh
Confidence 88875 9999997
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=5.5e-24 Score=183.48 Aligned_cols=96 Identities=27% Similarity=0.475 Sum_probs=87.6
Q ss_pred EEEEeeeEEEcCCc---ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccE
Q psy16345 21 ELVFSGLSVTLDKR---PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKI 93 (121)
Q Consensus 21 ~i~~~~l~~~~~~~---~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i 93 (121)
.++++|++++|+++ ++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. +.+++++
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 49999999999753 6999999999999999999999999999999999999999999999999986 3578889
Q ss_pred EEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
+||+|++.+|. .|++||+.++..
T Consensus 1110 ~~v~Q~~~l~~-~ti~eNi~~~~~ 1132 (1284)
T 3g5u_A 1110 GIVSQEPILFD-CSIAENIAYGDN 1132 (1284)
T ss_dssp EEEESSCCCCS-SBHHHHHTCCCS
T ss_pred EEECCCCcccc-ccHHHHHhccCC
Confidence 99999998875 599999998753
No 48
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.83 E-value=3.7e-24 Score=147.44 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=75.8
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhh-cccEEEEeeCC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW-KRKICYVLQQD 100 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~i~~v~Q~~ 100 (121)
++.+++++.|+++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.... .++ +++|++
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~--~~~q~~ 84 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAG--KMIYHF 84 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETT--EEEEEE
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCC--cceecc
Confidence 34456778888788999999999999999999999999999999999999 99999999987764211 122 799998
Q ss_pred CCCCCCCHHHHHhh-cc
Q psy16345 101 IFFPELTLRQTLEV-SI 116 (121)
Q Consensus 101 ~l~~~ltv~e~l~~-~~ 116 (121)
.++ .+|+.||+.+ +.
T Consensus 85 ~l~-~ltv~e~l~~~g~ 100 (158)
T 1htw_A 85 DLY-RLADPEELEFMGI 100 (158)
T ss_dssp ECT-TCSCTTHHHHSTH
T ss_pred ccc-cCCcHHHHHHcCh
Confidence 888 8999999854 53
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.83 E-value=1.3e-20 Score=152.64 Aligned_cols=87 Identities=24% Similarity=0.291 Sum_probs=77.7
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
...++++++++.|++ ..|+.++|++++||++||+||||||||||+|+|+|+++|++|+|.+ ...++|++|
T Consensus 355 ~~~l~~~~l~~~~~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---------~~~i~~v~Q 424 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---------DLTVAYKPQ 424 (607)
T ss_dssp CEEEEECCEEEECSS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---------CCCEEEECS
T ss_pred ceEEEEeceEEEecc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---------eeEEEEEec
Confidence 356999999999976 4699999999999999999999999999999999999999999976 246999999
Q ss_pred CCCCCCCCCHHHHHhhc
Q psy16345 99 QDIFFPELTLRQTLEVS 115 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~ 115 (121)
++.+++.+||.+++...
T Consensus 425 ~~~~~~~~tv~e~~~~~ 441 (607)
T 3bk7_A 425 YIKAEYEGTVYELLSKI 441 (607)
T ss_dssp SCCCCCSSBHHHHHHHH
T ss_pred CccCCCCCcHHHHHHhh
Confidence 98877788999988654
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.83 E-value=1.9e-20 Score=149.85 Aligned_cols=87 Identities=26% Similarity=0.302 Sum_probs=77.3
Q ss_pred ccEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 19 PLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 19 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
...++++++++.|++. .|+.++|+|++||++||+||||||||||+|+|+|+++|++|+|.+ ...++||+|
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---------~~~i~~v~Q 354 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---------DLTVAYKPQ 354 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---------CCCEEEECS
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---------CceEEEEec
Confidence 3469999999999764 699999999999999999999999999999999999999999985 246999999
Q ss_pred CCCCCCCCCHHHHHhhc
Q psy16345 99 QDIFFPELTLRQTLEVS 115 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~ 115 (121)
++..++.+||.+++...
T Consensus 355 ~~~~~~~~tv~~~~~~~ 371 (538)
T 1yqt_A 355 YIKADYEGTVYELLSKI 371 (538)
T ss_dssp SCCCCCSSBHHHHHHHH
T ss_pred CCcCCCCCcHHHHHHhh
Confidence 98877788999887653
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.81 E-value=3.4e-20 Score=156.28 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=76.4
Q ss_pred cEEEEeeeEEEcCC--cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEe
Q psy16345 20 LELVFSGLSVTLDK--RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVL 97 (121)
Q Consensus 20 ~~i~~~~l~~~~~~--~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~ 97 (121)
.+++++|++++|++ +++|+++||+|++|+++||+||||||||||+|+|+|+++|++|+|++++. .+++|++
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-------~~I~yv~ 742 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-------CRIAYIK 742 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-------CCEEEEC
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-------cceEeec
Confidence 46999999999964 67999999999999999999999999999999999999999999999752 2599999
Q ss_pred eCCCC----CCCCCHHHHHhh
Q psy16345 98 QQDIF----FPELTLRQTLEV 114 (121)
Q Consensus 98 Q~~~l----~~~ltv~e~l~~ 114 (121)
|++.. ....|+.+++.+
T Consensus 743 Q~~~~~l~~~~~~t~~e~i~~ 763 (986)
T 2iw3_A 743 QHAFAHIESHLDKTPSEYIQW 763 (986)
T ss_dssp HHHHHHGGGCTTSCHHHHHHH
T ss_pred cchhhhhhcccccCHHHHHHH
Confidence 98531 234689998865
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.81 E-value=1.2e-19 Score=145.30 Aligned_cols=87 Identities=28% Similarity=0.396 Sum_probs=77.6
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
..++++++++.|++ ..|..++|+|++||++||+||||||||||+|+|+|+++|++|+|.+++ ..++|++|+
T Consensus 268 ~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--------~~i~~~~q~ 338 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--------QILSYKPQR 338 (538)
T ss_dssp EEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--------CCEEEECSS
T ss_pred ceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------eeeEeechh
Confidence 46899999999977 458888999999999999999999999999999999999999998764 468999998
Q ss_pred CCCCCCCCHHHHHhhc
Q psy16345 100 DIFFPELTLRQTLEVS 115 (121)
Q Consensus 100 ~~l~~~ltv~e~l~~~ 115 (121)
....+.+||++|+.+.
T Consensus 339 ~~~~~~~tv~~~l~~~ 354 (538)
T 3ozx_A 339 IFPNYDGTVQQYLENA 354 (538)
T ss_dssp CCCCCSSBHHHHHHHH
T ss_pred cccccCCCHHHHHHHh
Confidence 7766678999999864
No 53
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.72 E-value=4.2e-20 Score=144.75 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=81.7
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE---eCCh---------
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE---RLNK--------- 87 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~---~~~~--------- 87 (121)
.++++++++.|+ +..+|+++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|+ ++..
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccc
Confidence 478899999997 57899999 999999999999999999999999999999999999999998 4421
Q ss_pred hhcccEEEEeeC-CCCCCCCCHHHHHhhcc
Q psy16345 88 RWKRKICYVLQQ-DIFFPELTLRQTLEVSI 116 (121)
Q Consensus 88 ~~~~~i~~v~Q~-~~l~~~ltv~e~l~~~~ 116 (121)
.+++.++|++|+ ..+++++++.+|+.+..
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a 239 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIA 239 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 256779999995 45667789999987643
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.72 E-value=6.7e-19 Score=142.63 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=70.1
Q ss_pred eeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE---------EECCEeCCh------h
Q psy16345 25 SGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI---------RLNKERLNK------R 88 (121)
Q Consensus 25 ~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i---------~~~g~~~~~------~ 88 (121)
+|++++|+++ .+|+++| ++++||++||+||||||||||||+|+|+++|++|++ .++|.++.. .
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 8999999876 4999999 999999999999999999999999999999999985 345544321 1
Q ss_pred hcccEEEEeeCCCCCC---CCCHHHHHhh
Q psy16345 89 WKRKICYVLQQDIFFP---ELTLRQTLEV 114 (121)
Q Consensus 89 ~~~~i~~v~Q~~~l~~---~ltv~e~l~~ 114 (121)
.+..+++++|....++ ..|++|++..
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 202 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKK 202 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHH
T ss_pred hhcceEEeechhhhchhhccccHHHHhhh
Confidence 2345789998643222 1389998864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.72 E-value=9.1e-18 Score=141.60 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=68.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCC
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~ 100 (121)
.+...|++++|+++.+|+++||+|++|++++|+||||||||||||+|+| |+| +|.+.... .+++|++|+.
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~--~~~~~v~q~~ 504 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEE--CRTVYVEHDI 504 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTT--SCEEETTCCC
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccc--eeEEEEcccc
Confidence 4677799999999999999999999999999999999999999999995 332 33332211 2478999875
Q ss_pred -CCCCCCCHHHHHhh
Q psy16345 101 -IFFPELTLRQTLEV 114 (121)
Q Consensus 101 -~l~~~ltv~e~l~~ 114 (121)
.+++.+|+.||+.+
T Consensus 505 ~~~~~~ltv~e~l~~ 519 (986)
T 2iw3_A 505 DGTHSDTSVLDFVFE 519 (986)
T ss_dssp CCCCTTSBHHHHHHT
T ss_pred cccccCCcHHHHHHH
Confidence 67788999999975
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=8.8e-19 Score=140.19 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=69.1
Q ss_pred EEE-eeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE---------EECCEeCCh---
Q psy16345 22 LVF-SGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI---------RLNKERLNK--- 87 (121)
Q Consensus 22 i~~-~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i---------~~~g~~~~~--- 87 (121)
.++ +|++++|+++ .+++++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++..
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 6899999876 5999999 999999999999999999999999999999999985 345544321
Q ss_pred ---hhcccEEEEeeCCCCCCC---CCHHHHHh
Q psy16345 88 ---RWKRKICYVLQQDIFFPE---LTLRQTLE 113 (121)
Q Consensus 88 ---~~~~~i~~v~Q~~~l~~~---ltv~e~l~ 113 (121)
..+..+++++|...+++. .++.+++.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~ 131 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK 131 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHh
Confidence 113458899987543332 37888775
No 57
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-20 Score=147.27 Aligned_cols=84 Identities=17% Similarity=0.060 Sum_probs=72.2
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-E-EEECCEeCChhhcccEEEEee
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-V-IRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~-i~~~g~~~~~~~~~~i~~v~Q 98 (121)
+++++|+++.|+ +++|++++|++++|+||||||||||+|+|+|++.|++| + |.++|. .++.++|++|
T Consensus 118 mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-----~~~~i~~vpq 186 (460)
T 2npi_A 118 MKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-----PQQPIFTVPG 186 (460)
T ss_dssp HHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-----TTSCSSSCSS
T ss_pred hhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-----ccCCeeeecc
Confidence 478889988885 79999999999999999999999999999999999999 9 999982 3567999999
Q ss_pred CCC---CCCCCCHHHHHhhcc
Q psy16345 99 QDI---FFPELTLRQTLEVSI 116 (121)
Q Consensus 99 ~~~---l~~~ltv~e~l~~~~ 116 (121)
+.. +.+.+|+++|+ ++.
T Consensus 187 ~~~l~~~~~~~tv~eni-~~~ 206 (460)
T 2npi_A 187 CISATPISDILDAQLPT-WGQ 206 (460)
T ss_dssp CCEEEECCSCCCTTCTT-CSC
T ss_pred chhhcccccccchhhhh-ccc
Confidence 984 34456898888 643
No 58
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.68 E-value=1.5e-18 Score=130.21 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=68.1
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh--cccEEEEeeCCC-CCCC
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW--KRKICYVLQQDI-FFPE 105 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~--~~~i~~v~Q~~~-l~~~ 105 (121)
+.+++|++++|++++|+||||||||||+++|+|+++|+.|+|.+.|.+..+ .+ +..++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 467899999999999999999999999999999999999999999988642 12 346999999988 8888
Q ss_pred CCHHHHHhhcc
Q psy16345 106 LTLRQTLEVSI 116 (121)
Q Consensus 106 ltv~e~l~~~~ 116 (121)
+++++++.++.
T Consensus 170 ~~v~e~l~~~~ 180 (302)
T 3b9q_A 170 TVLSKAVKRGK 180 (302)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999998753
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.67 E-value=9.6e-18 Score=136.73 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=43.8
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHH---------------------HHHHcCCCCC-------ccEEEECCEe
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLL---------------------NCLAGRVKLD-------SGVIRLNKER 84 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl---------------------~~l~gl~~~~-------~G~i~~~g~~ 84 (121)
...+|++|||+|++||++||+||||||||||+ +++.++..|+ .+.+.+++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45789999999999999999999999999998 8899998888 4555566654
Q ss_pred CChhhcccEEEEeeCC-------------------CCCCCCCHHHHHhhc
Q psy16345 85 LNKRWKRKICYVLQQD-------------------IFFPELTLRQTLEVS 115 (121)
Q Consensus 85 ~~~~~~~~i~~v~Q~~-------------------~l~~~ltv~e~l~~~ 115 (121)
.....++.+++|+|.+ ..++.+|++||+.+.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~ 159 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFF 159 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHh
Confidence 4322233344444432 234567999998763
No 60
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.67 E-value=2.5e-20 Score=140.20 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=51.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~ 80 (121)
.|++++|++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|..
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 378899999997 78999999999999999999999999999999999998 788853
No 61
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.67 E-value=1.4e-17 Score=120.62 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHH
Q psy16345 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQT 111 (121)
Q Consensus 32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~ 111 (121)
+++++|+++||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. +++.+|+.++
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~ 78 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE------QRQRKVVILSQDR-FYKVLTAEQK 78 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc------ccCCceEEEeCCc-CccccCHhHh
Confidence 5678999999999999999999999999999999999975 433333 3467899999995 6778899998
Q ss_pred Hhhc
Q psy16345 112 LEVS 115 (121)
Q Consensus 112 l~~~ 115 (121)
+.+.
T Consensus 79 ~~~~ 82 (245)
T 2jeo_A 79 AKAL 82 (245)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 7654
No 62
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.67 E-value=6.5e-18 Score=129.23 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=71.7
Q ss_pred EEeeeEEE---cCC--cceE---------EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC-C-
Q psy16345 23 VFSGLSVT---LDK--RPIL---------KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL-N- 86 (121)
Q Consensus 23 ~~~~l~~~---~~~--~~~l---------~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~-~- 86 (121)
++++++|+ |.. ..+| ++++|.+++|++++|+||||||||||+++|+|+++|++|.|.++|..- .
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 55666666 642 3344 999999999999999999999999999999999999999999987431 1
Q ss_pred hhhcccEEEEe-eCCCC--CCCCCHHHHHhhccc
Q psy16345 87 KRWKRKICYVL-QQDIF--FPELTLRQTLEVSIA 117 (121)
Q Consensus 87 ~~~~~~i~~v~-Q~~~l--~~~ltv~e~l~~~~~ 117 (121)
...++.++|++ |++.+ ++..|+++|+..++.
T Consensus 217 ~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR 250 (361)
T ss_dssp TTCSSEEEEECC----------CCHHHHHHHHTT
T ss_pred cccCCEEEEeecCccccccccccCHHHHHHHHHh
Confidence 12566799999 87654 367799999998764
No 63
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.66 E-value=3e-18 Score=122.59 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=45.7
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----hhcccEEEEeeCCCCCCC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----RWKRKICYVLQQDIFFPE 105 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----~~~~~i~~v~Q~~~l~~~ 105 (121)
.+.-|+++||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++.. ..++.++|++|++.+|+.
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 356799999999999999999999999999999999988 5 99998 665421 234678999998765543
No 64
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.2e-16 Score=129.54 Aligned_cols=82 Identities=29% Similarity=0.282 Sum_probs=68.4
Q ss_pred eeeEEEcCC-cceEEeeEEEEeCC-----eEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEee
Q psy16345 25 SGLSVTLDK-RPILKDVSGVVKPG-----ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 25 ~~l~~~~~~-~~~l~~vsl~i~~G-----~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
+++++.|++ ..++++++|++.+| |++||+||||||||||+|+|+|+++|++|+. + .+..++|++|
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~---~~~~i~~~~q 420 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I---PKLNVSMKPQ 420 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C---CSCCEEEECS
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c---cCCcEEEecc
Confidence 567788865 46899999999999 7899999999999999999999999999962 1 1346999999
Q ss_pred CCCCCCCCCHHHHHhhc
Q psy16345 99 QDIFFPELTLRQTLEVS 115 (121)
Q Consensus 99 ~~~l~~~ltv~e~l~~~ 115 (121)
+.......|+++++...
T Consensus 421 ~~~~~~~~tv~e~~~~~ 437 (608)
T 3j16_B 421 KIAPKFPGTVRQLFFKK 437 (608)
T ss_dssp SCCCCCCSBHHHHHHHH
T ss_pred cccccCCccHHHHHHHH
Confidence 97766667999987653
No 65
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.65 E-value=4.6e-18 Score=125.66 Aligned_cols=69 Identities=25% Similarity=0.189 Sum_probs=44.7
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-hhcccEEEEeeCCCCCCCCCHHHHHhhccc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-RWKRKICYVLQQDIFFPELTLRQTLEVSIA 117 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~ 117 (121)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ..++.++|++|++.+++.+||.||+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 479999999999999999999999999999999988753 345679999999999999999999888753
No 66
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.64 E-value=1e-17 Score=128.47 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=69.2
Q ss_pred EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh--cccEEEEeeCCC-CCCCC
Q psy16345 38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW--KRKICYVLQQDI-FFPEL 106 (121)
Q Consensus 38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~--~~~i~~v~Q~~~-l~~~l 106 (121)
.+++|++++|++++|+||||||||||+++|+|+++|+.|+|.+.+.++.+ .+ +..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 56889999999999999999999999999999999999999999988742 12 346999999988 88888
Q ss_pred CHHHHHhhcc
Q psy16345 107 TLRQTLEVSI 116 (121)
Q Consensus 107 tv~e~l~~~~ 116 (121)
++++++.++.
T Consensus 228 tv~e~l~~~~ 237 (359)
T 2og2_A 228 VLSKAVKRGK 237 (359)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999998754
No 67
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.64 E-value=1.7e-18 Score=122.55 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=47.8
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC----ChhhcccEEEEeeCCCCCCCCCHH
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL----NKRWKRKICYVLQQDIFFPELTLR 109 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~----~~~~~~~i~~v~Q~~~l~~~ltv~ 109 (121)
.+++++ .++++|++++|+||||||||||+|+|+|+++. +.+++... ....++.++|+||++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 456777 69999999999999999999999999999863 33333211 112346799999998777766766
Q ss_pred HHHh
Q psy16345 110 QTLE 113 (121)
Q Consensus 110 e~l~ 113 (121)
+++.
T Consensus 83 ~~l~ 86 (207)
T 1znw_A 83 GELL 86 (207)
T ss_dssp TCEE
T ss_pred CCce
Confidence 6653
No 68
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.63 E-value=4.5e-19 Score=132.82 Aligned_cols=93 Identities=10% Similarity=0.146 Sum_probs=79.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEE-------------------eCCeEEEEECCCCchHHHHHHHHHcCCC--CCccEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVV-------------------KPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIR 79 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i-------------------~~G~~~~liG~nGsGKSTLl~~l~gl~~--~~~G~i~ 79 (121)
.|++++|++.| .++++++++.+ .+|+++||+|+||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 47889999999 47899999988 9999999999999999999999999988 9999999
Q ss_pred E---CCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 80 L---NKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 80 ~---~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+ +|.......++.++++ |...+++.+++.+++.+..
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 9 8776554444567888 8777777889999987643
No 69
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.63 E-value=1.3e-17 Score=132.35 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=69.7
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------h--hcccEEEEeeCCCCCCCC
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------R--WKRKICYVLQQDIFFPEL 106 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~--~~~~i~~v~Q~~~l~~~l 106 (121)
-+++||++.+|++++|+|+||||||||+++|+|++++..|+|.+.+.+..+ . .++.++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999998766532 1 256799999998888888
Q ss_pred CHHHHHhhcc
Q psy16345 107 TLRQTLEVSI 116 (121)
Q Consensus 107 tv~e~l~~~~ 116 (121)
++++|+.++.
T Consensus 363 tV~e~l~~a~ 372 (503)
T 2yhs_A 363 VIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 70
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=6.3e-19 Score=125.96 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=50.9
Q ss_pred EcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC-hhhcccEEEEeeCC
Q psy16345 30 TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN-KRWKRKICYVLQQD 100 (121)
Q Consensus 30 ~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~-~~~~~~i~~v~Q~~ 100 (121)
.|+++.+|+++ ++|++++|+||||||||||+|+|+|+ +|++|+|........ ..+++.++|++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 45667788886 89999999999999999999999999 999999843111111 23466799999986
No 71
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.61 E-value=2.7e-18 Score=129.30 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=66.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEE-----------------------EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGV-----------------------VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~-----------------------i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~ 77 (121)
.|++++|++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 488899999994 566666654 8999999999999999999999999999887553
Q ss_pred EEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 78 IRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 78 i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
+.++||+|++.+++. |+++|+.+
T Consensus 121 -------------~~v~~v~qd~~~~~~-t~~e~~~~ 143 (312)
T 3aez_A 121 -------------PRVDLVTTDGFLYPN-AELQRRNL 143 (312)
T ss_dssp -------------CCEEEEEGGGGBCCH-HHHHHTTC
T ss_pred -------------CeEEEEecCccCCcc-cHHHHHHH
Confidence 468999999988888 99999865
No 72
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=4.4e-18 Score=132.91 Aligned_cols=86 Identities=24% Similarity=0.278 Sum_probs=61.6
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeE--EEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC----hhhcccEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----KRWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~--~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~----~~~~~~i~ 94 (121)
.+++++ ++.|++.+ ++++||++++|++ ++|+||||||||||+++|+|+. ++|.++. ...++.++
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~ 85 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNT 85 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEE
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEE
Confidence 356677 88898877 9999999999999 9999999999999999999984 2222221 12345799
Q ss_pred EEeeCCCCCCCCCHHHHHhhcc
Q psy16345 95 YVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 95 ~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
|++|++.+++.+|+.||+.++.
T Consensus 86 ~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 86 YDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEC--CEEEEEEEEEECCCC
T ss_pred EEeecCccccccchhhhhhhhh
Confidence 9999988877788888877654
No 73
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.60 E-value=1.1e-17 Score=135.56 Aligned_cols=92 Identities=18% Similarity=0.344 Sum_probs=59.7
Q ss_pred EEEEeeeEEEcCC--cceEEee----------EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEECCEeCC-
Q psy16345 21 ELVFSGLSVTLDK--RPILKDV----------SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRLNKERLN- 86 (121)
Q Consensus 21 ~i~~~~l~~~~~~--~~~l~~v----------sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~- 86 (121)
.++++++++.|+. +++++.+ +++++. +||+|+|||||||||++|+|+..| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4788999999965 3455444 366665 999999999999999999999988 7999999998852
Q ss_pred ------hhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 87 ------KRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 87 ------~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
..+++.++|++|++.+++.++|++|+.+.
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 24677899999999999999999999764
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.59 E-value=9.9e-18 Score=130.54 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=63.1
Q ss_pred cceEEeeEEEEeCCe--------------------EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccE
Q psy16345 34 RPILKDVSGVVKPGE--------------------LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKI 93 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~--------------------~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i 93 (121)
+.++++++|++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+.. + .
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---~--~ 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---M--E 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------C--C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---e--e
Confidence 468999999999999 99999999999999999999999999999999987653 1 2
Q ss_pred EEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 94 CYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 94 ~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
+|++|++ .++.++++|++.++.
T Consensus 111 ~~v~q~~-~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 111 RHPYKHP-NIPNVVFWDLPGIGS 132 (413)
T ss_dssp CEEEECS-SCTTEEEEECCCGGG
T ss_pred EEecccc-ccCCeeehHhhcccc
Confidence 7899985 456778777765543
No 75
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.58 E-value=2.2e-16 Score=118.48 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=61.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh--cccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW--KRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~--~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
+|++++|+||||||||||+++|+|+++|+.|+|.+.|.++.+ .+ +..++|++|++.++|.+++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999988642 12 34689999999888888999998764
Q ss_pred c
Q psy16345 116 I 116 (121)
Q Consensus 116 ~ 116 (121)
.
T Consensus 181 ~ 181 (304)
T 1rj9_A 181 K 181 (304)
T ss_dssp H
T ss_pred H
Confidence 3
No 76
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.57 E-value=1.7e-16 Score=118.49 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=51.7
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCChh----hcccEEEEeeCCC-------------
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNKR----WKRKICYVLQQDI------------- 101 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~~----~~~~i~~v~Q~~~------------- 101 (121)
|++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ +|+.+.+. ..+.++||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 345679999999999999999999999999999999999 88876531 1236899999975
Q ss_pred ---CCCCCCHHHHHhhc
Q psy16345 102 ---FFPELTLRQTLEVS 115 (121)
Q Consensus 102 ---l~~~ltv~e~l~~~ 115 (121)
+|+++++ +|+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HGGGSTTSSS-CCCSST
T ss_pred HHHHHHhccc-ccCcCC
Confidence 5788888 888774
No 77
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.56 E-value=2.2e-18 Score=130.85 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=73.7
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhccc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRK 92 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~ 92 (121)
+++++++++.|+.+.++++++|++.+|++++|+|+||||||||+++|+|++.|+.|+|.+.+.+... ..+++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3778889999977889999999999999999999999999999999999999999999999887632 23557
Q ss_pred EEEEeeCCCCCC
Q psy16345 93 ICYVLQQDIFFP 104 (121)
Q Consensus 93 i~~v~Q~~~l~~ 104 (121)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 899999988765
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.55 E-value=1.2e-16 Score=121.03 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=63.8
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--hhhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKICYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--~~~~~~i~~v~Q~~~l~~~ltv~e~l 112 (121)
+++++++|.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+.. ...++.++++++ ...+.+.++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~l 233 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCL 233 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHHH
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-----CChhHHHHH
Confidence 4789999999999999999999999999999999999999999999986532 124566888875 355777777
Q ss_pred hhcc
Q psy16345 113 EVSI 116 (121)
Q Consensus 113 ~~~~ 116 (121)
..++
T Consensus 234 a~aL 237 (330)
T 2pt7_A 234 KSCL 237 (330)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6654
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=4.4e-17 Score=129.60 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=67.0
Q ss_pred EEEEeeeEEEcCCcceEEeeEE-EEeCCeEEEEECCCCchHHHHHHH--HHcCCCCCccEEEECCEeCCh---hhcccEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSG-VVKPGELLAVMGPSGCGKTTLLNC--LAGRVKLDSGVIRLNKERLNK---RWKRKIC 94 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl-~i~~G~~~~liG~nGsGKSTLl~~--l~gl~~~~~G~i~~~g~~~~~---~~~~~i~ 94 (121)
.++.+++.+...+.++|++++| .+++|++++|+||||||||||+++ ++|+.+|.+|.|+++|.+... ..++.++
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 4666667666667889999999 999999999999999999999999 689999899999999987432 3356789
Q ss_pred EEeeCCC
Q psy16345 95 YVLQQDI 101 (121)
Q Consensus 95 ~v~Q~~~ 101 (121)
|++|++.
T Consensus 92 ~~~q~~~ 98 (525)
T 1tf7_A 92 WDLAKLV 98 (525)
T ss_dssp CCHHHHH
T ss_pred CChHHhh
Confidence 9998753
No 80
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.55 E-value=2.7e-17 Score=118.26 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=52.4
Q ss_pred eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeCChhhcccEEEEeeCCCCCCCCCH
Q psy16345 39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTL 108 (121)
Q Consensus 39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv 108 (121)
+-.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+++.....++.++|+||++.+|+.+++
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~ 79 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 79 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHh
Confidence 33456799999999999999999999999999885 68888888766543345678999998776665555
No 81
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.54 E-value=1.1e-15 Score=121.03 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=49.1
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
..+|+++||++++ ++++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4689999999999 999999999999999999999999999999999998764
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.54 E-value=4.1e-16 Score=118.94 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=67.2
Q ss_pred EEEEeeeEEEcC-CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh-----------h
Q psy16345 21 ELVFSGLSVTLD-KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK-----------R 88 (121)
Q Consensus 21 ~i~~~~l~~~~~-~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~-----------~ 88 (121)
.++.+++++.|+ +..+++++ |.|.+|++++|+|+||||||||+++|+|+.+|+.|.+.+.|++... .
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 478899999997 67899999 9999999999999999999999999999999999999998865211 1
Q ss_pred hcccEEEEeeCC
Q psy16345 89 WKRKICYVLQQD 100 (121)
Q Consensus 89 ~~~~i~~v~Q~~ 100 (121)
+++.+.+++|..
T Consensus 124 ~~~~v~~~~~~~ 135 (347)
T 2obl_A 124 LSKCVLVVTTSD 135 (347)
T ss_dssp HTTEEEEEECTT
T ss_pred hhceEEEEECCC
Confidence 345578888753
No 83
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.52 E-value=2.4e-14 Score=109.98 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=60.1
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC--------------------------------------CCcc
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--------------------------------------LDSG 76 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~--------------------------------------~~~G 76 (121)
.++++++|++.+| +++|+|+|||||||||++|+++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5799999999999 999999999999999999977664 3478
Q ss_pred EEEECCEeCCh----hh-cccEEEEeeCCCCCCCCCHHHH
Q psy16345 77 VIRLNKERLNK----RW-KRKICYVLQQDIFFPELTLRQT 111 (121)
Q Consensus 77 ~i~~~g~~~~~----~~-~~~i~~v~Q~~~l~~~ltv~e~ 111 (121)
.++++|+++.. .+ ...+++++|+..++.. +..+.
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~ 166 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQ 166 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHH
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHH
Confidence 89999999863 23 3348999998776543 44433
No 84
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.52 E-value=1.9e-15 Score=114.51 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=62.8
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhc--ccEEEEeeCCCCCCCCCHHHHHh
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWK--RKICYVLQQDIFFPELTLRQTLE 113 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~--~~i~~v~Q~~~l~~~ltv~e~l~ 113 (121)
.++|++++|+||||||||||+++|+|+++|+.|+|.+.+.++.+ .++ ..+.|++|...++|.+++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999988742 122 34669999998999899999998
Q ss_pred hcc
Q psy16345 114 VSI 116 (121)
Q Consensus 114 ~~~ 116 (121)
++.
T Consensus 206 ~~~ 208 (328)
T 3e70_C 206 HAK 208 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 85
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=6.5e-16 Score=115.51 Aligned_cols=83 Identities=22% Similarity=0.207 Sum_probs=34.7
Q ss_pred eeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC-CCCCccEEEECCEeCCh-hhcccEEEEeeCCCC
Q psy16345 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR-VKLDSGVIRLNKERLNK-RWKRKICYVLQQDIF 102 (121)
Q Consensus 25 ~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl-~~~~~G~i~~~g~~~~~-~~~~~i~~v~Q~~~l 102 (121)
.||+++|+++.++++++|+| +|+|+||+|||||+++|+|. ..|++| +.++|.++.. ...+.+++++|...+
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 47899999999999999998 99999999999999999997 888889 8877766542 123457889987766
Q ss_pred CCCCCHHHHHhh
Q psy16345 103 FPELTLRQTLEV 114 (121)
Q Consensus 103 ~~~ltv~e~l~~ 114 (121)
...++++|+..+
T Consensus 75 ~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 75 KLRLTVVDTPGY 86 (301)
T ss_dssp CEEEEEEEEC--
T ss_pred ccCcchhhhhhh
Confidence 666666665544
No 86
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.49 E-value=4.3e-16 Score=108.80 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=49.1
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh----hhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~----~~~~~i~~v~Q~~~l~~~ltv~e~l 112 (121)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+....+ ..+..++|++|++.+++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57788999999999999999999999999864 46777665542 2345688999987766655554443
No 87
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.48 E-value=1.8e-14 Score=107.67 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=51.5
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCCh---hhc-ccEEEEeeCCCCC-----CCCCHHH
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNK---RWK-RKICYVLQQDIFF-----PELTLRQ 110 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~---~~~-~~i~~v~Q~~~l~-----~~ltv~e 110 (121)
++.+|++++|+||||||||||+|+|+ +..|..|+|.+ +|+...+ ..+ +.++|++|+|.+. +++|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 44579999999999999999999999 99999999999 8887653 112 3689999998653 67889 8
Q ss_pred HH
Q psy16345 111 TL 112 (121)
Q Consensus 111 ~l 112 (121)
|+
T Consensus 239 ~l 240 (302)
T 2yv5_A 239 EV 240 (302)
T ss_dssp GG
T ss_pred HH
Confidence 87
No 88
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.1e-14 Score=117.96 Aligned_cols=53 Identities=28% Similarity=0.495 Sum_probs=47.0
Q ss_pred eeeEEEcCCc-ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345 25 SGLSVTLDKR-PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78 (121)
Q Consensus 25 ~~l~~~~~~~-~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i 78 (121)
++++++|+.. ..+++++ .+++|+++||+||||||||||||+|+|+++|++|+|
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 3578999764 4677777 689999999999999999999999999999999987
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.47 E-value=1.7e-15 Score=111.39 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=57.1
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCEeCChhhcccEEEEee
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKRKICYVLQ 98 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~i~~v~Q 98 (121)
++++++++. ++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....+..+++++|
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q 77 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ 77 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeH
Confidence 345666542 5899999 8999999999999999999999999999987 899999987764323334566777
No 90
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.47 E-value=7e-15 Score=110.61 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=44.5
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE---CCEeCCh--hh-cccEEEEeeCCCCCC----CCCHHHH
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL---NKERLNK--RW-KRKICYVLQQDIFFP----ELTLRQT 111 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~---~g~~~~~--~~-~~~i~~v~Q~~~l~~----~ltv~e~ 111 (121)
+++.+|++++|+|+||+|||||+|+|+|+..+..|+|.+ .|+..++ .+ +..++|++|.|.+.. ++|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567799999999999999999999999999999999998 7776542 22 222799999987665 6788 88
Q ss_pred Hh
Q psy16345 112 LE 113 (121)
Q Consensus 112 l~ 113 (121)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 84
No 91
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.4e-15 Score=118.58 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=55.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC---hhhcccEEEEe
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN---KRWKRKICYVL 97 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~---~~~~~~i~~v~ 97 (121)
++.+++++++|+++.++++++|+| +|+|+||||||||+++|+|+..+..| .++..+. ....+.+++++
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCccceeeeeEEEEE
Confidence 489999999999999999999998 99999999999999999999875544 1221111 11234588888
Q ss_pred eCCCCCCCCCHHHHHhhcc
Q psy16345 98 QQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~ 116 (121)
|+..+++.+|++|++.++.
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp -----CEEEEEEECC----
T ss_pred ecCCcccceeeeechhhhh
Confidence 8877776777777766543
No 92
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.46 E-value=9.5e-16 Score=110.95 Aligned_cols=72 Identities=14% Similarity=0.253 Sum_probs=51.7
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh------------
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK------------ 87 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~------------ 87 (121)
..|+++|+...++. ++++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++..
T Consensus 8 ~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred eEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 35788888655532 566666 8999999999999999999999999999999999987621
Q ss_pred hhcccEEEEeeC
Q psy16345 88 RWKRKICYVLQQ 99 (121)
Q Consensus 88 ~~~~~i~~v~Q~ 99 (121)
..+..++|++|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 135679999985
No 93
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.45 E-value=7.5e-15 Score=117.53 Aligned_cols=53 Identities=28% Similarity=0.323 Sum_probs=44.0
Q ss_pred eeeEEEcCCcceEEeeEEE-EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345 25 SGLSVTLDKRPILKDVSGV-VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78 (121)
Q Consensus 25 ~~l~~~~~~~~~l~~vsl~-i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i 78 (121)
++.+.+|+... ++-..|. .++||++||+||||||||||+|+|+|+++|++|+|
T Consensus 3 ~~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 3 GEVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CCEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CCCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 45788897532 4444553 36999999999999999999999999999999998
No 94
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.42 E-value=5.4e-15 Score=102.29 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=51.2
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChh--hcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~--~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
.+++|++++|+|+||||||||+|+|++. +..|.|.+++.++... .++.++|++|+.. +.+++.+++.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHH
Confidence 4789999999999999999999999998 6789999998765321 1233566666532 345788887653
No 95
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=3.4e-14 Score=99.97 Aligned_cols=52 Identities=25% Similarity=0.375 Sum_probs=45.6
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC--hhhcccEEEEeeCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN--KRWKRKICYVLQQD 100 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~--~~~~~~i~~v~Q~~ 100 (121)
|++++|+||||||||||+++|+|+++ ++| |.++|.... +.++++++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec
Confidence 78999999999999999999999998 889 998887764 24677899999974
No 96
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.40 E-value=1.1e-15 Score=119.10 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=66.3
Q ss_pred EEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hhcccEE
Q psy16345 23 VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RWKRKIC 94 (121)
Q Consensus 23 ~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~~~~i~ 94 (121)
+++++.+.|+...+|+++ +. .+|++++|+|||||||||||++|+|++.+.+|+|.+.+.++.. ...+.++
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred CHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccC
Confidence 344455555444567777 43 7999999999999999999999999999999999998877631 1234455
Q ss_pred EEe---------eCCCC--CCC----CCHHHHHhhc
Q psy16345 95 YVL---------QQDIF--FPE----LTLRQTLEVS 115 (121)
Q Consensus 95 ~v~---------Q~~~l--~~~----ltv~e~l~~~ 115 (121)
+.+ |++.+ +.+ .|+.+++.++
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~ 258 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS 258 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH
Confidence 555 88764 233 5888888764
No 97
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.40 E-value=6.6e-14 Score=107.26 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=51.7
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEEC-CEeCChhhcccEEEEeeCCCCCCCCCHHHH
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLN-KERLNKRWKRKICYVLQQDIFFPELTLRQT 111 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~-g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~ 111 (121)
++++++. .+|++++|+|+||||||||+++|+|+.. +..|+|.+. |..........+++++|+..+++..+++++
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 4555554 4899999999999999999999999999 999999987 655433445678999998877766677664
No 98
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.39 E-value=1.3e-13 Score=112.35 Aligned_cols=35 Identities=43% Similarity=0.543 Sum_probs=32.5
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
..+|++|||+|++||++||+||||||||||+++|+
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 46899999999999999999999999999998754
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.38 E-value=1.2e-14 Score=102.77 Aligned_cols=70 Identities=26% Similarity=0.333 Sum_probs=51.3
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCC-------CccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKL-------DSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~-------~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
-+++|++++|+||||||||||+++|+|+..+ ..+.+++++.... ..+++++++|...+++. ++.+|+.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 6899999999999999999999999995544 3447777765421 12245666777666665 777776654
No 100
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.38 E-value=2.3e-13 Score=93.65 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=35.4
Q ss_pred eeEEEEeCCeEEEEECCCCchHHHHHH------------HHHcCCCCCccEEEEC
Q psy16345 39 DVSGVVKPGELLAVMGPSGCGKTTLLN------------CLAGRVKLDSGVIRLN 81 (121)
Q Consensus 39 ~vsl~i~~G~~~~liG~nGsGKSTLl~------------~l~gl~~~~~G~i~~~ 81 (121)
++||++++|++++|+||||||||||+| .+.|+..++.|.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~ 55 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVT 55 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhH
Confidence 689999999999999999999999999 6666666655554443
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.37 E-value=3.7e-13 Score=94.56 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=44.2
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCC--CCCCHHHHHhhc
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFF--PELTLRQTLEVS 115 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~--~~ltv~e~l~~~ 115 (121)
.++|+++||+|+||||||||+++|+|++.| .++|++|++.++ ..++++++..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------------~i~~v~~d~~~~~~~~~~~~~~~~~~ 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------------RVALLPMDHYYKDLGHLPLEERLRVN 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------------CeEEEecCccccCcccccHHHhcCCC
Confidence 478999999999999999999999998754 488999998766 557888876553
No 102
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.36 E-value=1.6e-14 Score=110.96 Aligned_cols=70 Identities=26% Similarity=0.302 Sum_probs=55.2
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCEeCChhhcccEEEEee-----CCCCCCCCCHHHHHhh
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKRKICYVLQ-----QDIFFPELTLRQTLEV 114 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~i~~v~Q-----~~~l~~~ltv~e~l~~ 114 (121)
+++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++...++..++||+| ++..|. .++++++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~-~~l~~~L~~ 208 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFA-DALRAALRE 208 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSH-HHHHHHTTS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHH-HHHHHHhhh
Confidence 7899999999999999999999999999887 899987766654344567899999 544442 356666654
No 103
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.33 E-value=2.8e-13 Score=96.82 Aligned_cols=38 Identities=34% Similarity=0.415 Sum_probs=22.9
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH-cCC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA-GRV 71 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~-gl~ 71 (121)
.+..+++||++++|++++|+||||||||||+++|+ |++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999 998
No 104
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.31 E-value=1.5e-14 Score=103.37 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=50.6
Q ss_pred EEEeeeEEEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH--cCCCCCccEEEECCEeCCh---hhcccEEE
Q psy16345 22 LVFSGLSVTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA--GRVKLDSGVIRLNKERLNK---RWKRKICY 95 (121)
Q Consensus 22 i~~~~l~~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~--gl~~~~~G~i~~~g~~~~~---~~~~~i~~ 95 (121)
++++.++..+.. ..++.+ .|++|++++|+||||||||||+++|+ ++..+..|.+++.+..... ...+.++|
T Consensus 7 ~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 83 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGW 83 (251)
T ss_dssp -CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTC
T ss_pred cccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCC
Confidence 555666655533 123322 78999999999999999999999999 6645666777777654322 22344666
Q ss_pred EeeC
Q psy16345 96 VLQQ 99 (121)
Q Consensus 96 v~Q~ 99 (121)
++|+
T Consensus 84 ~~~~ 87 (251)
T 2ehv_A 84 DFEK 87 (251)
T ss_dssp CHHH
T ss_pred ChHH
Confidence 6665
No 105
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.31 E-value=4.1e-13 Score=106.89 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=59.7
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe-CChhhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER-LNKRWKRKICYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~-~~~~~~~~i~~v~Q~~~l~~~ltv~e~l 112 (121)
..+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|.+.|.. +.......++++.|........+..+++
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 356788999999999999999999999999999999999999999998754 2211123456666554322234555554
Q ss_pred hh
Q psy16345 113 EV 114 (121)
Q Consensus 113 ~~ 114 (121)
..
T Consensus 327 ~~ 328 (511)
T 2oap_1 327 RA 328 (511)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 106
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.30 E-value=1.2e-13 Score=114.40 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=57.0
Q ss_pred EEEeeeEEEc---CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCC-CCccEEEECCEeCChhhcccEEEEe
Q psy16345 22 LVFSGLSVTL---DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK-LDSGVIRLNKERLNKRWKRKICYVL 97 (121)
Q Consensus 22 i~~~~l~~~~---~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~i~~v~ 97 (121)
+++++..+.. +++.+++|++|+ |++++|+||||||||||||+|+|+.. +..|.+.- ..+..+++++
T Consensus 551 i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-------a~~~~i~~v~ 620 (765)
T 1ewq_A 551 LQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-------AEEAHLPLFD 620 (765)
T ss_dssp EEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-------SSEEEECCCS
T ss_pred EEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-------hhccceeeHH
Confidence 6677765444 456789999999 99999999999999999999999864 56675421 1234577777
Q ss_pred eCCCCCCCCCHHHHHhhcc
Q psy16345 98 QQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~~ 116 (121)
| +++.+++.||+..+.
T Consensus 621 ~---i~~~~~~~d~l~~g~ 636 (765)
T 1ewq_A 621 G---IYTRIGASDDLAGGK 636 (765)
T ss_dssp E---EEEECCC------CC
T ss_pred H---hhccCCHHHHHHhcc
Confidence 6 566678888887654
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.29 E-value=1.6e-13 Score=95.71 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=37.1
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC-----CCCccEEEE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV-----KLDSGVIRL 80 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~-----~~~~G~i~~ 80 (121)
+++++|+++.|+ ..++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 478999999997 467877 899999999999999999999999999987 677776643
No 108
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.28 E-value=2.9e-14 Score=102.93 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=53.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHH---cCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
++++++|+|+||||||||+++|+ |+..++.|++.+++.+........+.+++|+..+++..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 9999999998876644322233345556777777777788888865
No 109
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.26 E-value=3.3e-12 Score=106.73 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=40.9
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHH-HHcC
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNC-LAGR 70 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~-l~gl 70 (121)
..++++++++ ..|++|||+|++|+++||+|+||||||||+++ |+|+
T Consensus 501 ~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 501 GWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp CEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 3599999986 26999999999999999999999999999996 6654
No 110
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.26 E-value=7.8e-13 Score=112.38 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=42.4
Q ss_pred EEEEee-----eEEEc-CCcceEEeeEEEEeC-------CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 21 ELVFSG-----LSVTL-DKRPILKDVSGVVKP-------GELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 21 ~i~~~~-----l~~~~-~~~~~l~~vsl~i~~-------G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
+|++++ +++.| +++.+++|++|++.+ |++++|+||||||||||||++ |++.
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 489999 99998 668899999999987 999999999999999999999 8865
No 111
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.24 E-value=1.1e-13 Score=97.11 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=51.1
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh---hhcccEEEEeeCCCCCCCCCHHHHH
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK---RWKRKICYVLQQDIFFPELTLRQTL 112 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~---~~~~~i~~v~Q~~~l~~~ltv~e~l 112 (121)
++.+..+..++|++++|+|+||||||||+++|++.+ |.+.+++.++.. ..+...++++|+...++.+++.+++
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 333334566899999999999999999999999976 888998877642 1223467888876666666777776
Q ss_pred hhc
Q psy16345 113 EVS 115 (121)
Q Consensus 113 ~~~ 115 (121)
...
T Consensus 94 ~~~ 96 (200)
T 4eun_A 94 MDA 96 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 112
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.23 E-value=3.6e-14 Score=99.58 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=46.2
Q ss_pred eeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE--EECCEeCC
Q psy16345 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI--RLNKERLN 86 (121)
Q Consensus 25 ~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i--~~~g~~~~ 86 (121)
+|+++.++.....+..++..++|++++|+|+|||||||++++|++.+. ..|.+ ++++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 466777777667778888889999999999999999999999999887 66877 88776553
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.22 E-value=1.2e-12 Score=100.06 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=53.2
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCC-ccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhcc
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLD-SGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSI 116 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~ 116 (121)
...+|++++|+|||||||||||++|+|+++++ .|.|...+.++........+++.|.......++..+.+...+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh
Confidence 66889999999999999999999999999886 577765554443233344567777654444457777665544
No 114
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.21 E-value=3.8e-13 Score=98.40 Aligned_cols=51 Identities=31% Similarity=0.437 Sum_probs=36.1
Q ss_pred EEEEeee-EEEc-CCcceEEeeEEEEeC---CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 21 ELVFSGL-SVTL-DKRPILKDVSGVVKP---GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 21 ~i~~~~l-~~~~-~~~~~l~~vsl~i~~---G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++++|+ ++.| ++.++|+++||++.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 9999 778899999999999 9999999999999999999998844
No 115
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.19 E-value=9.5e-12 Score=85.43 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.7
Q ss_pred EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345 38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77 (121)
Q Consensus 38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~ 77 (121)
+++++++.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6889999998 99999999999999999999987766553
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.19 E-value=3.4e-13 Score=93.36 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=45.8
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
|++++|+||||||||||+++|++ +..|.+.+++.++... ...++++|.....+.+++++++.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDL 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHH
Confidence 68999999999999999999997 5678899887654221 2345666654333445777776653
No 117
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.17 E-value=6.8e-12 Score=87.32 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=29.4
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G 76 (121)
+++++|++++|+|+|||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999999866555
No 118
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.17 E-value=7.6e-12 Score=105.50 Aligned_cols=44 Identities=39% Similarity=0.414 Sum_probs=38.8
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
..+++++++. ..|++|||+|++|+++||+|+||||||||+++|+
T Consensus 628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3588888863 4699999999999999999999999999999853
No 119
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.17 E-value=4e-12 Score=88.41 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=33.5
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC---Ch-hhcccEEEEeeCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL---NK-RWKRKICYVLQQD 100 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~---~~-~~~~~i~~v~Q~~ 100 (121)
.++|+||||||||||+|+|+|++. +.++|... .. ..+++++|++|+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999875 33444332 11 3456799999975
No 120
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.16 E-value=4.6e-14 Score=104.16 Aligned_cols=52 Identities=29% Similarity=0.477 Sum_probs=45.4
Q ss_pred cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
++...+++++++.+++| ++|+||||||||||+|+|++...+ +.+.++|.++.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL 81 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence 45567899999999999 999999999999999999998876 78999887653
No 121
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.16 E-value=2e-12 Score=94.00 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=48.3
Q ss_pred eCCeEEEEECCCCchHHHHHHHHH---cCCCCCccEEE--------ECCEeCC-----hhhcccEEEEeeCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVIR--------LNKERLN-----KRWKRKICYVLQQD 100 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i~--------~~g~~~~-----~~~~~~i~~v~Q~~ 100 (121)
.+|++++|+|||||||||++|+|+ |+..++.|.++ .+|.++. ..+++.+++++|..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999998 7887763 24567789999753
No 122
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.14 E-value=7.5e-12 Score=88.20 Aligned_cols=43 Identities=30% Similarity=0.427 Sum_probs=37.3
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECCEeCC
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKERLN 86 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~ 86 (121)
.++|++++|+||||||||||+++|+|+++| ..|.|.++|..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 478999999999999999999999999875 4788888776654
No 123
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.13 E-value=2e-12 Score=95.41 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=44.5
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEEECCEeC
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNKERL 85 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~ 85 (121)
++|+++++.+++|++++|+||||||||||+++|++...+.+| .+.+.+.+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 579999999999999999999999999999999999988877 676544333
No 124
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.13 E-value=2.6e-14 Score=107.78 Aligned_cols=91 Identities=18% Similarity=0.285 Sum_probs=69.0
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCC-------eEEEEECCCCchHHHHHHHHHcCC----CCCccEEEECCEeCCh---
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPG-------ELLAVMGPSGCGKTTLLNCLAGRV----KLDSGVIRLNKERLNK--- 87 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G-------~~~~liG~nGsGKSTLl~~l~gl~----~~~~G~i~~~g~~~~~--- 87 (121)
++.++++..|++..+++++++.+.+| +.++|+||||+|||||+++|++.+ .+.+|.+...+.++..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 55677777888888999999999876 899999999999999999999987 5556655544443321
Q ss_pred h-hcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 88 R-WKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 88 ~-~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
. .+..+.+++|...+.+ ++.|++..
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~ 124 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYS 124 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHH
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHH
Confidence 1 2456899998776654 67777754
No 125
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.12 E-value=1.3e-12 Score=99.40 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=58.4
Q ss_pred eEEee-EEEEeCCeEEEEECCCCchHHHHHHHHHcCC--CCCc----cE-EEECCEeCChhhcccEEEEeeCCCCCCCCC
Q psy16345 36 ILKDV-SGVVKPGELLAVMGPSGCGKTTLLNCLAGRV--KLDS----GV-IRLNKERLNKRWKRKICYVLQQDIFFPELT 107 (121)
Q Consensus 36 ~l~~v-sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~--~~~~----G~-i~~~g~~~~~~~~~~i~~v~Q~~~l~~~lt 107 (121)
.|+.+ .+.+++|++++|+||||||||||+++|++.. +|+. |. +++++.+.. .++++++++|...+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 34444 5799999999999999999999999999987 5665 67 888876541 23457778887776655 6
Q ss_pred HHHHHhhc
Q psy16345 108 LRQTLEVS 115 (121)
Q Consensus 108 v~e~l~~~ 115 (121)
+.+|+.+.
T Consensus 196 v~~ni~~~ 203 (349)
T 1pzn_A 196 VLKHIYVA 203 (349)
T ss_dssp HGGGEEEE
T ss_pred HhhCEEEE
Confidence 77776654
No 126
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.12 E-value=2.3e-12 Score=89.36 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=41.0
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCCC---ccEEEECCEeCC-------hhhc-ccEE----EEeeCCCCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKLD---SGVIRLNKERLN-------KRWK-RKIC----YVLQQDIFF 103 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~-------~~~~-~~i~----~v~Q~~~l~ 103 (121)
++++|+|+||||||||+++|+|+++|. .|.|.+++.++. ..++ +.++ ++.|++.+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 589999999999999999999999987 899999987732 2344 3456 788876544
No 127
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.10 E-value=7.9e-12 Score=94.28 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=64.1
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCCh--------hh-----cccEEEE-eeCCCC
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNK--------RW-----KRKICYV-LQQDIF 102 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--------~~-----~~~i~~v-~Q~~~l 102 (121)
+++++|++.++++++|+|+||+||||++..|++.+.+..|++.+.+.+..+ .+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 368899999999999999999999999999999998888999988776632 23 5578999 777666
Q ss_pred CCCCCHHHHHhhcc
Q psy16345 103 FPELTLRQTLEVSI 116 (121)
Q Consensus 103 ~~~ltv~e~l~~~~ 116 (121)
.|..++++++....
T Consensus 175 ~p~~~~~~~l~~~~ 188 (320)
T 1zu4_A 175 DPASVVFDAIKKAK 188 (320)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66556778876543
No 128
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.10 E-value=1e-11 Score=93.15 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=28.8
Q ss_pred eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
++++++.+| +++|+|+||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 578888898 99999999999999999998553
No 129
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.09 E-value=1.2e-11 Score=86.93 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999875
No 130
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.09 E-value=6.3e-13 Score=99.82 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=51.7
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC--------CCCccEEEECCEeCCh-------------------hhcccEEEE---e
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV--------KLDSGVIRLNKERLNK-------------------RWKRKICYV---L 97 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~--------~~~~G~i~~~g~~~~~-------------------~~~~~i~~v---~ 97 (121)
++++|+|+||||||||+|.|.|+. .++.|+|.++|.++.. .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999987 7889999999887642 123446666 5
Q ss_pred eCCCCCCCCCHHHHHhhc
Q psy16345 98 QQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 98 Q~~~l~~~ltv~e~l~~~ 115 (121)
|+..++++.++.|++.++
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 776655566666665543
No 131
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.09 E-value=6.7e-12 Score=95.55 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=56.1
Q ss_pred eEEeeEEEEeC--CeEEEEECCCCchHHHHHHHHHcCCCCCc----cEEEEC----CEeCC---hhhcccEEEEeeCCCC
Q psy16345 36 ILKDVSGVVKP--GELLAVMGPSGCGKTTLLNCLAGRVKLDS----GVIRLN----KERLN---KRWKRKICYVLQQDIF 102 (121)
Q Consensus 36 ~l~~vsl~i~~--G~~~~liG~nGsGKSTLl~~l~gl~~~~~----G~i~~~----g~~~~---~~~~~~i~~v~Q~~~l 102 (121)
..+.|++++.+ |+.++|+|+||||||||+|+|+|+++|+. |++.++ +.+.. ..+ +.+++++|++.+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999998 888763 33321 122 346777776543
Q ss_pred CCCCCHHHHHhh
Q psy16345 103 FPELTLRQTLEV 114 (121)
Q Consensus 103 ~~~ltv~e~l~~ 114 (121)
+. .++.+|+.+
T Consensus 236 ~~-~t~~~nl~~ 246 (365)
T 1lw7_A 236 YA-VRHSHKIAF 246 (365)
T ss_dssp HH-HHHCSSEEE
T ss_pred HH-HhccCCEEE
Confidence 32 355555544
No 132
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.04 E-value=4.4e-11 Score=82.88 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=24.6
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999987
No 133
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.98 E-value=8.1e-11 Score=81.22 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=29.4
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCC-CccEEEE
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL-DSGVIRL 80 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~-~~G~i~~ 80 (121)
.+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36899999999999999999999998763 3455543
No 134
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.98 E-value=1.9e-10 Score=96.94 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=41.6
Q ss_pred EEEEeeeEEEc-------CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 21 ELVFSGLSVTL-------DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 21 ~i~~~~l~~~~-------~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.+.+++..... +++.+++|++|++++|++++|+||||||||||||++++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 46777765543 34689999999999999999999999999999999874
No 135
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.96 E-value=3.4e-10 Score=94.22 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=41.3
Q ss_pred EEEeeeEEEc-----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 22 LVFSGLSVTL-----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 22 i~~~~l~~~~-----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.+++..... +++.+++|++|+ ++|++++|+||||||||||||+|+|+.
T Consensus 578 i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 578 IRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 6666654432 456799999999 999999999999999999999999964
No 136
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.95 E-value=4.5e-10 Score=94.81 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=45.4
Q ss_pred EEEEeeeEEEc-----CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHH--------HcCCCCCcc
Q psy16345 21 ELVFSGLSVTL-----DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL--------AGRVKLDSG 76 (121)
Q Consensus 21 ~i~~~~l~~~~-----~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l--------~gl~~~~~G 76 (121)
.+++++....+ +.+.+++|++|++.+|++++|+||||||||||||++ .|..-|.++
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 47777765544 235789999999999999999999999999999999 776666544
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.95 E-value=3.1e-11 Score=84.82 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=43.0
Q ss_pred ceEEeeEE-EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 35 PILKDVSG-VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 35 ~~l~~vsl-~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
+.|+++.+ .+++|++++|+||||||||||+++|++...+..|.+.+.+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 45777776 7999999999999999999999999988777778887765444
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=4.6e-10 Score=78.36 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=24.5
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..+++++||++++|++++|+|++||||||+.+.|+..+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999754
No 139
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.92 E-value=4.5e-10 Score=95.08 Aligned_cols=44 Identities=32% Similarity=0.396 Sum_probs=38.9
Q ss_pred cEEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 20 LELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 20 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
..+++++++. ..|++|||+|++|+++||+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3588898862 3699999999999999999999999999999853
No 140
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.88 E-value=1e-09 Score=85.40 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=33.2
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-++++|+++.|+.++|+|+|||||||||++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 57999999999999999999999999999999983
No 141
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.88 E-value=1.4e-09 Score=77.13 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=36.5
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHc--CCCC-----CccEEEECCEe
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAG--RVKL-----DSGVIRLNKER 84 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~-----~~G~i~~~g~~ 84 (121)
-+++|++++|+||||||||||++.|++ +.++ ..|.+++++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 5554 56788888766
No 142
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.88 E-value=7.7e-10 Score=85.78 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=38.8
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS 75 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~ 75 (121)
.++++|+ +.|++.. .+++.+|++++|+|||||||||||++|++++.+.+
T Consensus 6 ~l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 6 GLELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 4788888 6775532 25567899999999999999999999999887754
No 143
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.87 E-value=2.3e-11 Score=87.70 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=51.1
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
.+++++.+.|+...+++++++.+++| +.|+||||+|||||+++|++... .|.+.+++.++
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 45677777787778899999999999 89999999999999999999875 68888877543
No 144
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=6.2e-10 Score=78.46 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=27.3
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL 73 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~ 73 (121)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 145
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.87 E-value=1.8e-09 Score=82.61 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=36.1
Q ss_pred EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
++.++.. +...+++++|++.+| +++|+||||||||||+++|++
T Consensus 6 i~~L~l~--~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 6 LSALSTL--NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEEE--SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EeEEEEe--CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 4555543 334578999999999 999999999999999999997
No 146
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.86 E-value=5.6e-10 Score=79.81 Aligned_cols=41 Identities=27% Similarity=0.199 Sum_probs=35.2
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
+...++|++++|.|+||||||||+++|+++ .|+|.+.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 335579999999999999999999999997 68888887664
No 147
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.86 E-value=2.8e-11 Score=88.63 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=50.1
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
.+++++.+.|+...+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.++
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 109 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence 34466666677777899999999999 89999999999999999999875 68888887554
No 148
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.85 E-value=2.1e-11 Score=92.11 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=42.9
Q ss_pred eEEEcCCcceEEeeEEEEeCCe------EEEEECCCCchHHHHHHHHHcCCC--CCccEEE
Q psy16345 27 LSVTLDKRPILKDVSGVVKPGE------LLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIR 79 (121)
Q Consensus 27 l~~~~~~~~~l~~vsl~i~~G~------~~~liG~nGsGKSTLl~~l~gl~~--~~~G~i~ 79 (121)
+++.|++...+++++..+..++ ++||+||||||||||+++|.+++. |..|.+.
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~ 126 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVE 126 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEE
Confidence 4555667778888888888777 999999999999999999999876 4555543
No 149
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.84 E-value=2.5e-09 Score=90.11 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=29.3
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl 64 (121)
...|++|||+|++|++++|+|+||||||||+
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 4579999999999999999999999999997
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.82 E-value=1.3e-10 Score=86.50 Aligned_cols=61 Identities=23% Similarity=0.110 Sum_probs=51.7
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
+.++++++.|+... ++++|+ +|++++++|+||+||||+++.|++++.+..|++.+.+.+..
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 45567777786543 788888 99999999999999999999999999888899999877764
No 151
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.79 E-value=4.3e-09 Score=72.72 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=32.0
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCC-----------CccEEEECCEeC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKL-----------DSGVIRLNKERL 85 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~-----------~~G~i~~~g~~~ 85 (121)
.++|+|+||||||||++.++|...+ ..|.+.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999998754 578899988654
No 152
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.78 E-value=6.8e-10 Score=77.77 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=34.5
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK 82 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g 82 (121)
..+|++++|+|+||||||||+++|++++.+..|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 578999999999999999999999998877778877654
No 153
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.77 E-value=3.6e-10 Score=77.53 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=31.5
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G 76 (121)
+|.+.+|+.++|+||||+|||||+++|++.+.+..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 456678999999999999999999999998866556
No 154
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=1.1e-09 Score=74.00 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=36.7
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc--EEEECCEeC
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLNKERL 85 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G--~i~~~g~~~ 85 (121)
+++++ +|+.++|+||||+|||||+++|++...+ .| .+++++.++
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM 75 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence 45555 8999999999999999999999998876 57 777776554
No 155
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.76 E-value=1.6e-09 Score=73.67 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=32.1
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999864 67777776553
No 156
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.75 E-value=6e-09 Score=72.82 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=27.8
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
-++++|.+++|+|++||||||+++.|++.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3568899999999999999999999999763
No 157
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.74 E-value=1.9e-09 Score=86.59 Aligned_cols=43 Identities=30% Similarity=0.414 Sum_probs=37.5
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEE-ECCEeC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIR-LNKERL 85 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~-~~g~~~ 85 (121)
.+.+|++++|+|+||||||||+|+|++++.+..| .+. ++|..+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4679999999999999999999999999988886 675 777554
No 158
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.74 E-value=4.8e-09 Score=83.18 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=51.0
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC----------------------C----------------CCCccE
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR----------------------V----------------KLDSGV 77 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl----------------------~----------------~~~~G~ 77 (121)
.+++++|++.+| +.+|+|+|||||||||.+|..+ . ....+.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~ 128 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCE
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcE
Confidence 577899999999 9999999999999999999654 2 122456
Q ss_pred EEECCEeCCh-----hhcccEEEEeeCCCCCC
Q psy16345 78 IRLNKERLNK-----RWKRKICYVLQQDIFFP 104 (121)
Q Consensus 78 i~~~g~~~~~-----~~~~~i~~v~Q~~~l~~ 104 (121)
++++|.++.. .....+.+++|+..+..
T Consensus 129 ~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l 160 (517)
T 4ad8_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL 160 (517)
T ss_dssp EESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred EEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence 7788877752 22345788888765543
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.73 E-value=1.4e-09 Score=87.72 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=59.7
Q ss_pred EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCc-cEEEECCEeCChhhcccEEEEeeC
Q psy16345 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDS-GVIRLNKERLNKRWKRKICYVLQQ 99 (121)
Q Consensus 24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~-G~i~~~g~~~~~~~~~~i~~v~Q~ 99 (121)
-++++.-|+...+++.+++.+.+|+.+.|+||||+|||||+++|++++++.. |.+.+.+.+.. .....++++++.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~-~~~p~i~~~p~g 112 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED-ENMPRIKTVPAC 112 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC-TTSCEEEEEETT
T ss_pred ccccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc-ccCCcEEEEecc
Confidence 3445555788889999999999999999999999999999999999998877 77777765543 233456776653
No 160
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.73 E-value=7e-09 Score=79.21 Aligned_cols=32 Identities=34% Similarity=0.629 Sum_probs=29.4
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
.++++++++.+| +++|+||||||||||+.+|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 467889999998 88999999999999999998
No 161
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.72 E-value=3.3e-09 Score=75.05 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=26.5
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
++...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999998765
No 162
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.72 E-value=4.7e-10 Score=79.13 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=42.1
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC---CCCccEEEE--------CCEeCCh-----hhcccEEEEeeCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV---KLDSGVIRL--------NKERLNK-----RWKRKICYVLQQD 100 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~---~~~~G~i~~--------~g~~~~~-----~~~~~i~~v~Q~~ 100 (121)
+.+++|+|++||||||++++|++.+ .++.|++.. .|.++.. .+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999998765 567788776 5665541 3566788888863
No 163
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.70 E-value=1.8e-09 Score=80.92 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=41.8
Q ss_pred eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
.+++...++++++|+|+|||||||+++.|++.+.+..|++.+.+.+..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 356667889999999999999999999999999888889998877654
No 164
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.70 E-value=8.3e-09 Score=79.81 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=48.7
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHc------------CCCCCccEEEECCEeCCh-----hhccc---EEEEeeCCCC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAG------------RVKLDSGVIRLNKERLNK-----RWKRK---ICYVLQQDIF 102 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~g------------l~~~~~G~i~~~g~~~~~-----~~~~~---i~~v~Q~~~l 102 (121)
.+++|..+||+|+||+|||||+++|+| ...|..|.+.+.|..+.. ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 556889999998744321 01112 2366676666
Q ss_pred CCCCCHHH
Q psy16345 103 FPELTLRQ 110 (121)
Q Consensus 103 ~~~ltv~e 110 (121)
....+..+
T Consensus 96 ~~~~s~~e 103 (392)
T 1ni3_A 96 TKGASTGV 103 (392)
T ss_dssp CCCCCSSS
T ss_pred ccCCcHHH
Confidence 66555433
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.68 E-value=1.5e-09 Score=83.55 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=39.1
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~ 80 (121)
..+++++++.+++|++++|+||||||||||+++|++.. .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 36789999999999999999999999999999999853 577665
No 166
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.67 E-value=7.2e-11 Score=89.35 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=51.4
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
++.+++.+.|+.+.+++++++.+.++.+++|+|++|+|||||++.|++.+.+..+++.+-+.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 455666666766778999999999999999999999999999999999877666666654443
No 167
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.66 E-value=6.5e-09 Score=77.30 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=45.5
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCChhhcccEEEEeeCCCCCCCCCHHHHHhhc
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVS 115 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 115 (121)
.++.++||+|++|||||||++.|.+++.+. | . -++.+.+|+||..+++. +.++|+.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g----------~-~~~~~~iv~~D~f~~~~-~~~~~l~~~ 86 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y----------G-GEKSIGYASIDDFYLTH-EDQLKLNEQ 86 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H----------G-GGSCEEEEEGGGGBCCH-HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C----------C-CCceEEEeccccccCCh-HHHHHHhcc
Confidence 578899999999999999999999988653 2 0 13345666999887765 888888765
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.65 E-value=1.5e-08 Score=70.02 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=30.4
Q ss_pred EEEEECCCCchHHHHHHHHHcCCC-----C------CccEEEECCEeC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVK-----L------DSGVIRLNKERL 85 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~-----~------~~G~i~~~g~~~ 85 (121)
.++|+|+||||||||++.|+|... | ..|.+.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 579999999999999999999742 3 257888988654
No 169
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.64 E-value=1.4e-09 Score=74.50 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=30.9
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCCcc--EEEECCEe
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLNKER 84 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G--~i~~~g~~ 84 (121)
.+|++++|+|++||||||++++|++.+.+ .| .+.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 47899999999999999999999987654 45 55555443
No 170
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.61 E-value=1.3e-08 Score=68.85 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKL 73 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~ 73 (121)
.|++++|+|+|||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999997653
No 171
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.60 E-value=4.3e-10 Score=89.89 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=47.6
Q ss_pred eeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345 25 SGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83 (121)
Q Consensus 25 ~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 83 (121)
+++...|....++.++++++ +|+.++|+||||+|||||+|+|++.+.+..|.+.+.+.
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 44555555556778888887 89999999999999999999999998888888887764
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=9.8e-09 Score=76.74 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=32.6
Q ss_pred EEEEECCCCchHHHHHHHHHc-CCCCCccEEEECCEeCCh--hhcccEEEEeeCCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG-RVKLDSGVIRLNKERLNK--RWKRKICYVLQQDI 101 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g-l~~~~~G~i~~~g~~~~~--~~~~~i~~v~Q~~~ 101 (121)
.+.|.||||+|||||+++|++ +..+..|.+.++|.+... ..+..+++++|...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 389999999999999999999 888999999998876542 22445777777653
No 173
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.58 E-value=3.4e-08 Score=76.52 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=34.9
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHH--HcCCCCCcc-----EEEECCEeC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCL--AGRVKLDSG-----VIRLNKERL 85 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l--~gl~~~~~G-----~i~~~g~~~ 85 (121)
-|++|+++.|+||||||||||++.| .++.+++.| .+++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 6899999999999999999999954 567665443 788887653
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.57 E-value=2e-08 Score=70.08 Aligned_cols=45 Identities=33% Similarity=0.364 Sum_probs=34.2
Q ss_pred EEeeEE-EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345 37 LKDVSG-VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83 (121)
Q Consensus 37 l~~vsl-~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 83 (121)
|+.+.. .+++|++++|+|+||||||||++.|++ ....+.++++..
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 444443 589999999999999999999999999 333445555544
No 175
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.52 E-value=3e-08 Score=72.48 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=27.2
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.+++|++++|+||||||||||++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999998543
No 176
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.51 E-value=5.2e-08 Score=65.62 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=23.7
Q ss_pred eeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence 34455555 499999999999999999986
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.49 E-value=1e-08 Score=78.37 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=51.2
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE-EECCEeCC-hhhcccEEEEeeCCCCCCCCCHHHHHhh
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI-RLNKERLN-KRWKRKICYVLQQDIFFPELTLRQTLEV 114 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i-~~~g~~~~-~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 114 (121)
-+++|+++.|.||+|||||||+..++....+..|.+ ++++.... ..+.+++++.+|+..+....++.+.+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH
Confidence 478999999999999999999999998776666765 55554432 2344556666666554445577666543
No 178
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.49 E-value=3.8e-08 Score=78.15 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=34.5
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE--EEECC
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV--IRLNK 82 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~--i~~~g 82 (121)
+..+++|++++|+|+||||||||+++++|+..+. |. +++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ 317 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAY 317 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEES
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 3489999999999999999999999999988775 54 44443
No 179
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.49 E-value=1.9e-08 Score=74.94 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=32.2
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEEECC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNK 82 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~~~g 82 (121)
.+|++++|+|+||+||||+++.|++.+.+..| +|.+-+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 57999999999999999999999999887677 554433
No 180
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.47 E-value=1.5e-07 Score=73.08 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=32.2
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCC------------CCccEEEECCEeC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVK------------LDSGVIRLNKERL 85 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~------------~~~G~i~~~g~~~ 85 (121)
-.++|+|+||+|||||++.|+|... +..|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3799999999999999999999753 5678999998764
No 181
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.45 E-value=7.2e-08 Score=69.11 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=31.2
Q ss_pred ceEEeeEEEEe---CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345 35 PILKDVSGVVK---PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80 (121)
Q Consensus 35 ~~l~~vsl~i~---~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~ 80 (121)
.-|.++++.+. +|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 34777777776 9999999999999999999999998776 556543
No 182
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.45 E-value=1.7e-08 Score=78.28 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=45.7
Q ss_pred EEEEeeeEEEcCC-cceEE--------------eeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 21 ELVFSGLSVTLDK-RPILK--------------DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 21 ~i~~~~l~~~~~~-~~~l~--------------~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+.++|+++.|.. +..++ |+.+.+.+|+.++|+|++|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3678999999965 66888 899999999999999999999999999998864
No 183
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.42 E-value=1.3e-08 Score=79.51 Aligned_cols=59 Identities=22% Similarity=0.102 Sum_probs=48.7
Q ss_pred EeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeCC
Q psy16345 24 FSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN 86 (121)
Q Consensus 24 ~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 86 (121)
.+++++.|+... ++++|+ ++++++++|+||+||||++..|++.+.+..+++.+.+.+..
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 345666676543 678887 89999999999999999999999999888889988776654
No 184
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.42 E-value=4.6e-08 Score=74.25 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=32.7
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 83 (121)
+++.+++|+|++|||||||++.|++.+.+..|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 457899999999999999999999987777777765543
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.40 E-value=1.9e-08 Score=76.73 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=38.3
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccE
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~ 77 (121)
.+.+.+++..|+++.++++++|.| +|+|++|+|||||++.|.+...+..+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 488899999998888999999987 999999999999999998875544443
No 186
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.35 E-value=8.7e-08 Score=67.26 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=36.1
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc--EEEECCEe
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG--VIRLNKER 84 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G--~i~~~g~~ 84 (121)
+.+.+|.++.|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34578999999999999999999999998876677 77777543
No 187
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.33 E-value=3.5e-07 Score=68.85 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=24.3
Q ss_pred EeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
.+..+++.+ .+++|+|||||||||++.+|+
T Consensus 15 ~~~~i~f~~-~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cCeEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 345566655 589999999999999999874
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.32 E-value=3.2e-07 Score=63.80 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
+++|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 189
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.31 E-value=2.8e-07 Score=65.17 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=32.7
Q ss_pred EEee-EEEEeCCeEEEEECCCCchHHHHHHHH-HcCCCCCccEEEECCE
Q psy16345 37 LKDV-SGVVKPGELLAVMGPSGCGKTTLLNCL-AGRVKLDSGVIRLNKE 83 (121)
Q Consensus 37 l~~v-sl~i~~G~~~~liG~nGsGKSTLl~~l-~gl~~~~~G~i~~~g~ 83 (121)
|+.+ ..-+++|+++.|+|+||||||||+..+ ....+...+.+++...
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4444 456899999999999999999996555 4444444445555543
No 190
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.31 E-value=6.9e-07 Score=60.48 Aligned_cols=27 Identities=41% Similarity=0.663 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
++|..++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 191
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.29 E-value=6.5e-07 Score=61.46 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=28.2
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--------CCCCccEEEECCEe
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--------VKLDSGVIRLNKER 84 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--------~~~~~G~i~~~g~~ 84 (121)
.+++++++..++. .++|+|++|+|||||++.+.+- ..+..+.+.+++..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 4788999988877 6789999999999999999872 22345667777643
No 192
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.29 E-value=3.6e-07 Score=64.25 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=23.8
Q ss_pred eeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34556655 599999999999999999885
No 193
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.29 E-value=1.2e-08 Score=76.06 Aligned_cols=59 Identities=22% Similarity=0.131 Sum_probs=46.8
Q ss_pred EeeeEEEcCCcceEEe-eEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 24 FSGLSVTLDKRPILKD-VSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 24 ~~~l~~~~~~~~~l~~-vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
.+++...|+... ++ ++++.+ +++++++|++|+||||++..|++.+.+..+++.+.+.+.
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 345666666543 56 788766 999999999999999999999998887778888766654
No 194
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.28 E-value=3.4e-07 Score=69.26 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=31.8
Q ss_pred cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--CCCCCccEE
Q psy16345 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVI 78 (121)
Q Consensus 34 ~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~~~G~i 78 (121)
..+|++++++++ .++|+|++|||||||++.|+| +++...|.+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 358999999998 899999999999999999999 555555544
No 195
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.27 E-value=9.9e-08 Score=66.10 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=38.7
Q ss_pred EEcCC-cceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC--------CCCCccEEEECCEe
Q psy16345 29 VTLDK-RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR--------VKLDSGVIRLNKER 84 (121)
Q Consensus 29 ~~~~~-~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl--------~~~~~G~i~~~g~~ 84 (121)
+.|++ ..+++++++..++. .++|+|++|+|||||++.+.+- ..+..+.+.+++..
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 34544 46888899887776 4789999999999999999872 23345777777644
No 196
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.27 E-value=1e-07 Score=75.71 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=48.3
Q ss_pred EEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 22 i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
.+++++...|....+++++++.+++| +.|+||||+|||||+|+|++... .+.+.+++.++
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 34455555566667889999999998 89999999999999999999764 67888887654
No 197
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.26 E-value=4.1e-07 Score=62.54 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.4
Q ss_pred eeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 39 DVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 39 ~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++|+...++..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 198
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.26 E-value=2.7e-07 Score=63.27 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=30.2
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i 78 (121)
...+|.++.|+|++||||||+.+.|+..+....+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 446799999999999999999999998776555555
No 199
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.25 E-value=9.3e-07 Score=67.52 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=30.6
Q ss_pred CeE-EEEECCCCchHHHHHHHHHcCCC-----------CCccEEEECCEeC
Q psy16345 47 GEL-LAVMGPSGCGKTTLLNCLAGRVK-----------LDSGVIRLNKERL 85 (121)
Q Consensus 47 G~~-~~liG~nGsGKSTLl~~l~gl~~-----------~~~G~i~~~g~~~ 85 (121)
|-. ++|+|++|||||||++.|+|... +..|.+.++|.++
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 444 99999999999999999999765 5668888887653
No 200
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.23 E-value=4.6e-07 Score=63.18 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=25.6
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999999998765
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.20 E-value=5.7e-07 Score=62.32 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
+++|+|+|||||||++++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
No 202
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.20 E-value=7.3e-08 Score=78.75 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=33.1
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCC--CccEEEECCEeC
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL--DSGVIRLNKERL 85 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~ 85 (121)
++++++++.++|+|++|+|||||++.|++...+ ..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence 466789999999999999999999999976543 56766 455443
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=2.4e-08 Score=74.84 Aligned_cols=52 Identities=27% Similarity=0.407 Sum_probs=42.9
Q ss_pred eeeEEEcCCcceEEeeEEEEeCCeE--EEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345 25 SGLSVTLDKRPILKDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRVKLDSG 76 (121)
Q Consensus 25 ~~l~~~~~~~~~l~~vsl~i~~G~~--~~liG~nGsGKSTLl~~l~gl~~~~~G 76 (121)
++++..++...+++.++..++.|++ +.|.||+|+||||+++++++.+.+..+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 4455556777889999999999998 999999999999999999997654443
No 204
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.15 E-value=3.1e-06 Score=56.58 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.5
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-.++|+|++|+|||||++.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 205
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.14 E-value=1.8e-06 Score=58.37 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.10 E-value=1.6e-06 Score=67.07 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=32.2
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcC-----------CCCCccEEEECC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGR-----------VKLDSGVIRLNK 82 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl-----------~~~~~G~i~~~g 82 (121)
.+..+..++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467788999999999999999999997 557778777655
No 207
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.09 E-value=3.3e-06 Score=64.24 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=26.7
Q ss_pred EEeeEEEEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 37 l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
+++..+++.+ .++.|+|+|||||||++.+|+
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4667778777 599999999999999999886
No 208
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.09 E-value=3e-07 Score=69.89 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=29.2
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEE
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~ 80 (121)
-+++|+++.|.|++|+|||||+..++.......|.+.|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly 94 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF 94 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 57899999999999999999988887543333344443
No 209
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.07 E-value=1.2e-06 Score=65.10 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++.+++|+|++|+|||||++.|.|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999986
No 210
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.06 E-value=2.1e-06 Score=58.47 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
No 211
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.04 E-value=1.8e-06 Score=59.79 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.3
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 212
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.04 E-value=2.6e-06 Score=57.96 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999964
No 213
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.03 E-value=2.7e-06 Score=71.27 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=32.4
Q ss_pred EEEEeeeEEEcCCcceEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64 (121)
Q Consensus 21 ~i~~~~l~~~~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl 64 (121)
.|++++..- -=|+||+++|+.|.+++|.|.||||||||.
T Consensus 15 ~I~i~gar~-----hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 15 FVQVRGARQ-----HNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEEEECS-----TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred eEEEeeccc-----cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 366655431 239999999999999999999999999996
No 214
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.00 E-value=3.3e-06 Score=60.13 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.5
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
+-.+|.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999999986
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.98 E-value=4e-07 Score=69.65 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=32.2
Q ss_pred ceEEeeEEEEeCCeE--EEEECCCCchHHHHHHHHHcCC
Q psy16345 35 PILKDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~--~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 466777888889988 9999999999999999998854
No 216
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.98 E-value=2.4e-06 Score=59.00 Aligned_cols=35 Identities=40% Similarity=0.450 Sum_probs=27.5
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCC---CccEEEECC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNK 82 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~---~~G~i~~~g 82 (121)
.+++|+|++|||||||++.|.+.+.. .-|.+..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 58899999999999999999986543 236666644
No 217
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.96 E-value=4.5e-06 Score=55.78 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
No 218
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.95 E-value=5.8e-06 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=22.5
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
No 219
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.92 E-value=3.7e-06 Score=60.61 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=31.5
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 457789999999999999999999998654 2445666544
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.92 E-value=3e-06 Score=60.78 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=30.2
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
.++.+++.+++| +.|.||+|+|||||+++|++..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 455566666655 8899999999999999999865421 355665443
No 221
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.90 E-value=5.5e-06 Score=70.40 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=27.7
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLL 64 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl 64 (121)
=|+||+++|+++++++|.|.||||||||.
T Consensus 35 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 35 NLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 39999999999999999999999999995
No 222
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.90 E-value=7.2e-06 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+|.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999763
No 223
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.90 E-value=3.3e-06 Score=67.33 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=37.5
Q ss_pred EeeEEEEeCCeEEEEECCCCchHHHHHHHHHc--CCCCCccEEEECCEe
Q psy16345 38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG--RVKLDSGVIRLNKER 84 (121)
Q Consensus 38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g--l~~~~~G~i~~~g~~ 84 (121)
+.+.+++.++..+.|.|.+||||||++++|.. +..++.+++.+...+
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 35788889999999999999999999999875 455556666655444
No 224
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.90 E-value=5.7e-06 Score=70.13 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=27.8
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLL 64 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl 64 (121)
=|+||+++|+++++++|.|.||||||||.
T Consensus 33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 49999999999999999999999999995
No 225
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.89 E-value=7.6e-06 Score=57.27 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHHc
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
++-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 226
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.89 E-value=9.1e-06 Score=57.68 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=23.3
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSG 76 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~~~G 76 (121)
.++|+|++|+|||||++.|+|...+..+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5799999999999999999997654443
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.88 E-value=4.3e-06 Score=60.37 Aligned_cols=32 Identities=41% Similarity=0.666 Sum_probs=25.0
Q ss_pred CeEEEEECCCCchHHHHHHHHH---cCCCCCccEE
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLA---GRVKLDSGVI 78 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~---gl~~~~~G~i 78 (121)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999998 4444444444
No 228
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.87 E-value=3.9e-06 Score=69.92 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=32.7
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 83 (121)
|.+++++.+.|+||||+|||||+++|++.+... -+.+++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~ 272 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGP 272 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEch
Confidence 467899999999999999999999999987543 3555543
No 229
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.85 E-value=8.4e-06 Score=54.13 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=18.6
Q ss_pred eEEEEECCCCchHHHHHHHH
Q psy16345 48 ELLAVMGPSGCGKTTLLNCL 67 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l 67 (121)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 230
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.84 E-value=9.6e-06 Score=55.23 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 231
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.84 E-value=8.8e-06 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.1
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+++|+||+|||||||.+.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998743
No 232
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.83 E-value=2.2e-06 Score=59.45 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=21.9
Q ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVKL 73 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~~ 73 (121)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999876543
No 233
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.82 E-value=4.5e-06 Score=70.51 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=27.8
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHH
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLL 64 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl 64 (121)
=|+||+++|+++++++|.|.||||||||.
T Consensus 13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 13 NLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 39999999999999999999999999996
No 234
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.82 E-value=1.1e-05 Score=55.32 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
+++|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 235
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.80 E-value=1.4e-05 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999865
No 236
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.79 E-value=1.4e-05 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999754
No 237
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.78 E-value=1.7e-05 Score=54.66 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999987543
No 238
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.77 E-value=6.1e-06 Score=62.88 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK 82 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g 82 (121)
.+..+.|+|++|||||||++.|+....+..+.+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5678899999999999999999987766677777653
No 239
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.77 E-value=1.5e-05 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.8
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999975
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.77 E-value=1.3e-05 Score=55.88 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=19.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
-+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999988643
No 241
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.76 E-value=1.3e-05 Score=54.31 Aligned_cols=25 Identities=36% Similarity=0.320 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.++.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
No 242
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.76 E-value=1.7e-05 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.3
Q ss_pred eEEEEECCCCchHHHHHHHHHc
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~g 69 (121)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 243
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.75 E-value=1.4e-05 Score=53.98 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998643
No 244
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.75 E-value=5.9e-06 Score=64.62 Aligned_cols=40 Identities=25% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEeC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERL 85 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~ 85 (121)
++.+++++|++|+||||++..|+..+....+++.+-+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5899999999999999999999998877777887765554
No 245
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.74 E-value=1.7e-05 Score=54.88 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.+|.+++|.|+.||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999975
No 246
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.73 E-value=1.6e-05 Score=54.22 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++.+++|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 247
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.73 E-value=2.1e-05 Score=53.34 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHHc
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
++.+++|.|++||||||+.+.|+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 248
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.71 E-value=2e-05 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
++|.+++|.|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999985
No 249
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.70 E-value=1.8e-05 Score=58.29 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=27.8
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK 82 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g 82 (121)
..+.++.|.|++||||||+.+.|+..++ .+.+.++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4578999999999999999999986432 24455554
No 250
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.70 E-value=3.4e-05 Score=59.01 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=28.8
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC-----------CCCCccEEEECC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR-----------VKLDSGVIRLNK 82 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl-----------~~~~~G~i~~~g 82 (121)
|-.++|+|.+|+|||||++.|++- ..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 356899999999999999999982 345667777655
No 251
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.69 E-value=6.1e-05 Score=51.23 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.3
Q ss_pred EEEEECCCCchHHHHHHHHHc-C----CCCCcc----EEEECCEe
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG-R----VKLDSG----VIRLNKER 84 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g-l----~~~~~G----~i~~~g~~ 84 (121)
.++|+|++|+|||||++.+.+ . ..|+.+ .+.+++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 588999999999999976654 3 345555 56666654
No 252
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.69 E-value=1.9e-05 Score=57.32 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.3
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 253
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.65 E-value=2.5e-05 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
No 254
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.65 E-value=2.1e-06 Score=67.01 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=39.9
Q ss_pred ceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCcc-EEEECCEeC
Q psy16345 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG-VIRLNKERL 85 (121)
Q Consensus 35 ~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~ 85 (121)
..|+++..-+++|+++.|.|++|+|||||+..+++...+..| .+.+.+.+.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 357777778999999999999999999999999886654334 566654443
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.65 E-value=2.4e-05 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
No 256
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.63 E-value=1.9e-05 Score=57.69 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.4
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCCCccEE
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i 78 (121)
..+.|.||+|+||||++++|+..+....+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 6899999999999999999999876655543
No 257
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.62 E-value=3.7e-05 Score=53.84 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+++.++.|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999753
No 258
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.62 E-value=2.3e-05 Score=52.98 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=17.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999853
No 259
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.62 E-value=3.2e-05 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 260
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.61 E-value=7e-05 Score=56.31 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=31.2
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
....++...+++ .|.-+.|+|+||+|||||...|.+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 345788888887 889999999999999999998886
No 261
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.60 E-value=3.3e-05 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+.+.+++|+|+.||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999764
No 262
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.59 E-value=3.5e-05 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.8
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999987653
No 263
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.59 E-value=3e-05 Score=57.15 Aligned_cols=40 Identities=28% Similarity=0.511 Sum_probs=31.9
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCE
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~ 83 (121)
+.+.++..+.|.||+|+|||||+++|++... .+.+.+++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~ 83 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP 83 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH
Confidence 3467889999999999999999999998653 455666543
No 264
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.58 E-value=3.8e-05 Score=52.02 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.-.++|+|++|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33478999999999999999999854
No 265
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.57 E-value=3.9e-05 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.3
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.++.++.|+|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 266
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.56 E-value=5.8e-05 Score=56.89 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=25.7
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-+++|+++.|.|++|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988873
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.56 E-value=4.3e-05 Score=53.13 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
.++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 268
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.56 E-value=5.2e-05 Score=52.31 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
..+.+++|+|+.||||||+.+.|+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999753
No 269
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.55 E-value=4.7e-05 Score=55.79 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.2
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 270
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.54 E-value=4.8e-05 Score=51.61 Aligned_cols=22 Identities=41% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 271
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.54 E-value=7.7e-06 Score=64.61 Aligned_cols=39 Identities=28% Similarity=0.560 Sum_probs=31.6
Q ss_pred cCCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 31 ~~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.....++++++.+++| +.|+||+|+|||||+|+|++..
T Consensus 35 l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 35 LKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred hhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 44445667777777777 7799999999999999999854
No 272
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.54 E-value=5.4e-05 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHHc
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
+..+++|.|+.||||||+.+.|+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
No 273
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.54 E-value=5.5e-05 Score=50.07 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999998753
No 274
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.54 E-value=5.4e-05 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.9
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++++|+|..||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
No 275
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.53 E-value=2.7e-05 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=21.8
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
+.+|+.+.+.||+||||||++.++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999999999887664
No 276
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.53 E-value=4.2e-05 Score=51.17 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.4
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 277
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.53 E-value=4.9e-05 Score=49.91 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 278
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=5.9e-05 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999873
No 279
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.52 E-value=7.3e-05 Score=55.76 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=25.5
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-+++|+++.|.|++|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999888763
No 280
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.52 E-value=5.7e-05 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 281
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.52 E-value=5.3e-05 Score=52.73 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
.++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 282
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.51 E-value=7.5e-05 Score=49.63 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999873
No 283
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.51 E-value=4.4e-05 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
No 284
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.51 E-value=5.7e-05 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred CeEEEEECCCCchHHHHHHHHHc
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~g 69 (121)
..+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 285
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.50 E-value=6.5e-05 Score=49.54 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998643
No 286
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.50 E-value=4.6e-05 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.3
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 287
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.50 E-value=5.9e-05 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 288
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.49 E-value=4.4e-05 Score=53.50 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHHc
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.+.++.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999975
No 289
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.49 E-value=6e-05 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999998753
No 290
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.49 E-value=5.9e-05 Score=54.09 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
--+++|.|++||||||+.+.|+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999773
No 291
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.49 E-value=4.6e-05 Score=51.56 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=21.0
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999975
No 292
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.48 E-value=6.4e-05 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.3
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-.++|+|.+|+|||||++.|.|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 357999999999999999999854
No 293
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.48 E-value=6.2e-05 Score=49.23 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 294
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.48 E-value=5.2e-05 Score=49.40 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 295
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.48 E-value=7.7e-05 Score=53.90 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999863
No 296
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.47 E-value=6.4e-05 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 297
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.47 E-value=6.2e-05 Score=50.00 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 298
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.47 E-value=6.6e-05 Score=49.36 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 299
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.46 E-value=6.8e-05 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
No 300
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.45 E-value=7e-05 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 301
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.45 E-value=7.1e-05 Score=49.14 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 302
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.45 E-value=8.6e-05 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHHc
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
++-+++|.|++||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 303
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.45 E-value=6.1e-05 Score=50.98 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.3
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
--.++|+|+.|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
No 304
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.45 E-value=6.2e-05 Score=50.68 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998753
No 305
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.45 E-value=7.4e-05 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 306
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.44 E-value=0.00017 Score=51.09 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=29.3
Q ss_pred CcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 33 ~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
....++..-++ ..|..+.|+||+|+|||||...|+..
T Consensus 21 ~~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 21 ERRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred cceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34456666555 46789999999999999999998864
No 307
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.44 E-value=6.3e-05 Score=56.79 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..-.++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999864
No 308
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.44 E-value=7.9e-05 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.3
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
..+++|+|..||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 309
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.44 E-value=8.1e-05 Score=55.58 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=28.0
Q ss_pred CCe--EEEEECCCCchHHHHHHHHHcCCCCCc--cEEEEC
Q psy16345 46 PGE--LLAVMGPSGCGKTTLLNCLAGRVKLDS--GVIRLN 81 (121)
Q Consensus 46 ~G~--~~~liG~nGsGKSTLl~~l~gl~~~~~--G~i~~~ 81 (121)
.+. .+.|.||+|+|||||++.+++...+.. .-+.++
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 446 899999999999999999998776542 344454
No 310
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.43 E-value=8.9e-05 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998754
No 311
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.43 E-value=5.6e-05 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.6
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKL 73 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~ 73 (121)
..+.|.||+|+|||||+++|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999876543
No 312
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.42 E-value=6.7e-05 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 313
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.42 E-value=8e-05 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 314
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.42 E-value=7.9e-05 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHHHHHcCCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998643
No 315
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.42 E-value=6.9e-05 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 316
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.42 E-value=3.4e-05 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=19.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+.-++||.|++||||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999763
No 317
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.42 E-value=8.4e-05 Score=55.11 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 318
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.41 E-value=5.9e-05 Score=56.02 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998654
No 319
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.41 E-value=7.5e-05 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998853
No 320
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.41 E-value=8.7e-05 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
.++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 321
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.40 E-value=0.0001 Score=48.99 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 322
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.40 E-value=8.9e-05 Score=49.65 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 323
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.40 E-value=8.8e-05 Score=53.94 Aligned_cols=26 Identities=38% Similarity=0.624 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
++..+.|.||+|+|||||++++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56788999999999999999999865
No 324
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.40 E-value=8.8e-05 Score=50.28 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 325
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.40 E-value=8.9e-05 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
No 326
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.39 E-value=9.3e-05 Score=48.77 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.4
Q ss_pred CeEEEEECCCCchHHHHHHHHHc
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.-.++|+|+.|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
No 327
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.39 E-value=7.9e-05 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.9
Q ss_pred CeEEEEECCCCchHHHHHHHHHc
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~g 69 (121)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 328
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.38 E-value=9.8e-05 Score=54.74 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.2
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-+++|+|+.|+|||||++.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999985
No 329
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.37 E-value=0.0001 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
++.|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 330
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.37 E-value=5.1e-05 Score=50.78 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHHc
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999984
No 331
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.37 E-value=0.0001 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 332
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.36 E-value=0.00011 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999975
No 333
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.36 E-value=0.0001 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++++|+.|+|||||++.|++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 334
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.36 E-value=0.00011 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 335
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.00011 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 336
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.35 E-value=6.7e-05 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.6
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-.++|+|+.|+|||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 337
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.35 E-value=0.0001 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|..|+|||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 338
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.34 E-value=8.9e-05 Score=53.85 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|++|+|||||++.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987753
No 339
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.33 E-value=8.8e-05 Score=50.95 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999753
No 340
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.33 E-value=0.0001 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999853
No 341
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.33 E-value=0.00012 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 342
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.33 E-value=9.4e-05 Score=56.58 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999875
No 343
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.32 E-value=0.00011 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++..+.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999753
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.32 E-value=0.00012 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.1
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-.++|+|+.|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998754
No 345
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.31 E-value=0.00012 Score=52.45 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-.++|+|++|+|||||++.|.+-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 346
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.31 E-value=0.00014 Score=53.04 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.3
Q ss_pred eEEEEECCCCchHHHHHHHHHc
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~g 69 (121)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 347
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.31 E-value=0.00013 Score=49.79 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 348
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.00016 Score=48.17 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998753
No 349
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.30 E-value=0.00013 Score=49.25 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 350
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.30 E-value=0.00013 Score=49.60 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 351
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.30 E-value=0.00014 Score=48.85 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999999864
No 352
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.29 E-value=0.00012 Score=50.96 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 353
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.29 E-value=0.00014 Score=49.22 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 354
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.29 E-value=0.00012 Score=49.09 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 355
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.29 E-value=0.00014 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 356
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.28 E-value=0.00016 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|..|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 357
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.28 E-value=0.00015 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 579999999999999999975
No 358
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.28 E-value=0.00018 Score=50.84 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.+..+.|+|+.||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 359
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.27 E-value=0.00017 Score=49.20 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.27 E-value=0.00019 Score=50.75 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999976443
No 361
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.27 E-value=0.00015 Score=49.65 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=19.5
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
.++|+|.+|+|||||++.+++
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 362
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.27 E-value=0.00014 Score=52.98 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 363
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.27 E-value=0.00013 Score=49.21 Aligned_cols=22 Identities=45% Similarity=0.750 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 364
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.26 E-value=0.00013 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEECCCCchHHHHHHHHHc
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~g 69 (121)
=.++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3689999999999999999986
No 365
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.26 E-value=0.00023 Score=54.06 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+++.++.|+||+|||||||...|+..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999999999765
No 366
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.26 E-value=0.00016 Score=48.86 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.6
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999753
No 367
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.26 E-value=0.00014 Score=49.50 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 368
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.26 E-value=0.00013 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.1
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
--.++|+|+.|+|||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999998864
No 369
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00016 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 370
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.25 E-value=0.00016 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.4
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-.++|+|..|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999874
No 371
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.24 E-value=0.00017 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.9
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 372
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.24 E-value=0.00014 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368899999999999999998743
No 373
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.24 E-value=0.00017 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 374
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.23 E-value=0.00017 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999987553
No 375
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.23 E-value=0.00017 Score=55.63 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
....++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999753
No 376
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.23 E-value=0.00018 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 377
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.23 E-value=0.00015 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.2
Q ss_pred EEEEECCCCchHHHHHHHHHc
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~g 69 (121)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
No 378
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.23 E-value=0.00016 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 379
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.23 E-value=0.00021 Score=52.90 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=24.8
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999999988874
No 380
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00018 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.8
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999853
No 381
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.22 E-value=0.00018 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 382
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.22 E-value=0.00021 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 383
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00018 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 384
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.21 E-value=0.00012 Score=49.46 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 385
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.21 E-value=0.00016 Score=49.06 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 386
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.21 E-value=0.00018 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 387
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.21 E-value=0.00016 Score=51.79 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=21.3
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..+|.++.|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987654
No 388
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.20 E-value=0.00022 Score=50.67 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+|.+++|.|..||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998654
No 389
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.20 E-value=0.00018 Score=50.02 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.7
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998743
No 390
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.20 E-value=0.0002 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 391
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.0002 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 392
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00016 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999988753
No 393
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.20 E-value=0.0002 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.9
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.=.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.20 E-value=0.00016 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999863
No 395
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.20 E-value=0.0002 Score=48.92 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+--.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999999864
No 396
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.19 E-value=0.00016 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 397
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.19 E-value=0.00019 Score=51.83 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=24.7
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
+.++.-+.|.||+|+|||||++.++....
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35667799999999999999999998653
No 398
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.19 E-value=0.00024 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.4
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.=.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 399
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.18 E-value=0.0002 Score=47.71 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.....+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998754
No 400
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.18 E-value=0.00018 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 401
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.18 E-value=0.00024 Score=56.08 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=27.2
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
+.+-+|+..+|+|++|+|||||++.|+....
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5678999999999999999999999887543
No 402
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.17 E-value=0.00022 Score=51.35 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+|.++.|.|++||||||+++.|...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999997654
No 403
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.17 E-value=0.00032 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.0
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHH
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLA 68 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~ 68 (121)
=+++|+++.|.|++|+|||||+-.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999999976554
No 404
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.17 E-value=0.00022 Score=48.69 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|.+|+|||||++.+.+-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999998853
No 405
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.16 E-value=0.00025 Score=51.68 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=22.6
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCCCCcc
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~~~~G 76 (121)
-.++++|.+|+|||||++.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 48899999999999999999986554334
No 406
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.15 E-value=0.00016 Score=53.33 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.+..+.|.||+|+|||||++.|+..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 346788999999999999999998653
No 407
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.15 E-value=0.00023 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.3
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999864
No 408
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.15 E-value=0.00024 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888753
No 409
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.15 E-value=0.0002 Score=49.27 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 410
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.15 E-value=0.00023 Score=49.33 Aligned_cols=22 Identities=41% Similarity=0.768 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 411
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.15 E-value=0.0002 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|..|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 412
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.15 E-value=0.00029 Score=53.08 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=22.1
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.+++|+||+|||||||.+.|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4688999999999999999998754
No 413
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.13 E-value=0.00021 Score=49.50 Aligned_cols=22 Identities=45% Similarity=0.750 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 414
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.13 E-value=0.00024 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|..|+|||||++.|.+-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 415
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.13 E-value=0.00028 Score=50.01 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999986543
No 416
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.12 E-value=0.00028 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+.|.||+|+|||||++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999997643
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.12 E-value=0.00031 Score=50.01 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.4
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.+++..++.|+||.||||+|..+.|+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 446778999999999999999999974
No 418
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.12 E-value=0.00028 Score=52.49 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=29.1
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
-|+.+..-+++|+++.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666665689999999999999999999888764
No 419
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.12 E-value=0.00016 Score=48.34 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=9.2
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 420
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.11 E-value=0.00035 Score=49.96 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+|.++.|.|++||||||+.+.|...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999997644
No 421
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.11 E-value=0.00025 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.8
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++++|++|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999853
No 422
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.10 E-value=0.00028 Score=53.16 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.5
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
No 423
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.10 E-value=0.00021 Score=55.59 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=21.0
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-.++|+|++|+|||||++.|+|-
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999999884
No 424
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.10 E-value=0.00018 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999998765
No 425
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.09 E-value=0.00032 Score=49.77 Aligned_cols=27 Identities=37% Similarity=0.620 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
....-+.|.||+|+|||||++.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998754
No 426
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.09 E-value=0.00025 Score=48.61 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 427
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.00034 Score=49.13 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|.+|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 428
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=4.4e-05 Score=56.50 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=27.5
Q ss_pred cceEEeeEEEEeCC--eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 34 RPILKDVSGVVKPG--ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 34 ~~~l~~vsl~i~~G--~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..+++.+.-.+..| ..+.|.||+|+||||+++++++.+
T Consensus 43 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444444444 348999999999999999998864
No 429
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.08 E-value=0.00025 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.8
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999753
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.07 E-value=0.00026 Score=49.22 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-.++|+|..|+|||||++.++.-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999888764
No 431
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.07 E-value=0.00033 Score=49.79 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.5
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKL 73 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~~ 73 (121)
.+|.++.+-|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999876654
No 432
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00028 Score=47.76 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 433
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.05 E-value=7.7e-05 Score=62.17 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=32.6
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
++.+.+++.+.|.||+|+|||||.++|++.+.. +-+.+++.+
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~ 546 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPE 546 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCCSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEechH
Confidence 566789999999999999999999999987642 334444433
No 434
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.02 E-value=0.00014 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988853
No 435
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.01 E-value=0.0005 Score=52.28 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.8
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
-+++|+++.|.|++|+|||||...++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999998877753
No 436
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.00 E-value=0.00031 Score=54.57 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.3
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+..+.|.||+|+|||||+++|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999865
No 437
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.99 E-value=0.00016 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=4.3
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988765
No 438
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00042 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 439
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.99 E-value=0.00036 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999764
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.97 E-value=0.00037 Score=47.93 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.6
Q ss_pred eEEEEECCCCchHHHHHHHHHc
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~g 69 (121)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4688999999999999988875
No 441
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.96 E-value=0.00044 Score=48.03 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.3
Q ss_pred eEEEEECCCCchHHHHHHHHHcC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl 70 (121)
=.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36889999999999999998764
No 442
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.95 E-value=0.00058 Score=51.34 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.8
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..++.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 443
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.94 E-value=0.00025 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.2
Q ss_pred CeEEEEECCCCchHHHHHHHHHc
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.=.++|+|+.|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999999965
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.93 E-value=0.00054 Score=48.21 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=19.3
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
++.|+||.||||+|..+.|+.-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 445
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.92 E-value=0.0013 Score=45.71 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=25.5
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.++..-.+ ..|.-+.|.|+||+|||||...|..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444 5688999999999999999887764
No 446
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.91 E-value=0.0007 Score=44.48 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.+.-+.|.||+|+|||++.+.|+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 455688999999999999999998653
No 447
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.88 E-value=0.00048 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999853
No 448
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.86 E-value=0.00046 Score=54.08 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=26.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCCCccEEE
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~ 79 (121)
++.++.++|++|+||||++..|+..+....-++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4789999999999999999999875544333443
No 449
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00047 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998755
No 450
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.85 E-value=0.00035 Score=52.92 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=35.3
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCCCCCccEEEECCEe
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~ 84 (121)
-|+.+..-+.+|+++.|.|++|+|||||+..++.......+.+.|..-+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3455555689999999999999999999988876433234556554333
No 451
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.84 E-value=0.00065 Score=46.16 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.+.|.||.|+|||||++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 452
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.82 E-value=0.00068 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.0
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+++|+||+|||||||.+.|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998643
No 453
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.80 E-value=0.00025 Score=50.74 Aligned_cols=28 Identities=36% Similarity=0.699 Sum_probs=22.4
Q ss_pred EEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 41 sl~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.+..++| +.|.||+|+|||||+++|+..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3444455 779999999999999999874
No 454
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.80 E-value=0.00077 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.0
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998765
No 455
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.79 E-value=0.00058 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.752 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999884
No 456
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.79 E-value=0.00078 Score=48.99 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.+..+.|.||+|+|||||++.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999887654
No 457
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.78 E-value=0.00084 Score=46.23 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCchHHHHH-HHHH
Q psy16345 46 PGELLAVMGPSGCGKTTLL-NCLA 68 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl-~~l~ 68 (121)
+|.++.+.|+.|+||||++ +.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999997 5543
No 458
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.76 E-value=0.00073 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|.+++|||||++.|++..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 459
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.76 E-value=0.00067 Score=52.61 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=29.4
Q ss_pred eEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 36 ~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-|+.+.--+++|+++.|.|++|+|||||+..++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 355555568999999999999999999998887643
No 460
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.76 E-value=0.00089 Score=50.60 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.8
Q ss_pred EeeEEEEeCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 38 KDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 38 ~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
..+.++++---.++|+|.+++|||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 455666666556899999999999999999864
No 461
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.76 E-value=0.0011 Score=48.66 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.7
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
+-.++++|.+|+|||||++.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998653
No 462
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.75 E-value=0.001 Score=46.64 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=22.6
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
|.+++|=|.-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987553
No 463
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.75 E-value=0.00092 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.-+++|+|+.|+|||||+..|+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997643
No 464
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.71 E-value=0.0011 Score=50.20 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 42 GVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 42 l~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
--+++|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4678899999999999999999998874
No 465
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.70 E-value=0.00095 Score=47.99 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.+...+.|.||+|+|||||++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
No 466
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.72 E-value=0.00026 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.4
Q ss_pred eEEEEECCCCchHHHHHHHHHc
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~g 69 (121)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4689999999999999988865
No 467
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.69 E-value=0.0003 Score=58.43 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=25.0
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~~ 73 (121)
+..|+.+.|+||+||||||++.+++....+
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~ 135 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEM 135 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467899999999999999999988665433
No 468
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.67 E-value=0.00098 Score=48.17 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.8
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+..+.|.||+|+||||+++.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998765
No 469
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.67 E-value=0.00096 Score=50.08 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
++..+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999765
No 470
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.0012 Score=49.16 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+..-+.|.||.|+|||+|++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999865
No 471
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.66 E-value=0.0012 Score=53.88 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+|.++.|+|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998644
No 472
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.65 E-value=0.00087 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++..++++|.+|+|||||++.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999985
No 473
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.64 E-value=0.00063 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 474
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.64 E-value=0.0016 Score=46.58 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCCCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRVKL 73 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~~~ 73 (121)
.+.-+.|.||+|+|||+|++.|+.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3467889999999999999999987643
No 475
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.63 E-value=0.0013 Score=48.72 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.2
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 476
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.63 E-value=0.00062 Score=47.16 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=18.2
Q ss_pred EEEEECCCCchHHHHHHH-HHc
Q psy16345 49 LLAVMGPSGCGKTTLLNC-LAG 69 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~-l~g 69 (121)
.++|+|+.|+|||||++. +.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999998 544
No 477
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.62 E-value=0.0011 Score=52.82 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999987554
No 478
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.62 E-value=0.0013 Score=47.33 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.5
Q ss_pred eEEEEECCCCchHHHHHHHHHc
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~g 69 (121)
-..||+|+.||||||+.+.|+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.62 E-value=0.0012 Score=49.22 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.++..+.|.||.|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999987654
No 480
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.61 E-value=0.0013 Score=49.42 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 45 KPGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 45 ~~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+...+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356678999999999999999998754
No 481
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.60 E-value=0.0013 Score=52.96 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+.++.|.|.+||||||+.+.|...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998654
No 482
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.59 E-value=0.0013 Score=49.07 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998753
No 483
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.59 E-value=0.00096 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.2
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
--.++|+|..|+|||||++.|.|..
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999999853
No 484
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.57 E-value=0.0015 Score=48.37 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
+..-+.|.||.|+|||+|+++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45568899999999999999998754
No 485
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.57 E-value=0.0012 Score=48.53 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.-..+.|.||.|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33567788999999999999999754
No 486
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.55 E-value=0.00085 Score=52.65 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
.|=.++|+|+.|+|||||++.|++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4455999999999999999999874
No 487
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.55 E-value=0.0013 Score=51.41 Aligned_cols=37 Identities=35% Similarity=0.615 Sum_probs=27.5
Q ss_pred EeeEEEEeCCeE--EEEECCCCchHHHHHHHHHcCCCCC
Q psy16345 38 KDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRVKLD 74 (121)
Q Consensus 38 ~~vsl~i~~G~~--~~liG~nGsGKSTLl~~l~gl~~~~ 74 (121)
+.+.-.+..|.+ +.|.||+|+|||||+++|+......
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 333334445554 8899999999999999999876543
No 488
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.55 E-value=0.0016 Score=49.73 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.0
Q ss_pred EEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 43 VVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 43 ~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
-+++|+++.|.|++|+|||||+..++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999877654
No 489
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.54 E-value=0.0015 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEECCCCchHHHHHHHHHcCC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
.++++|..|+|||||++.|++..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999999853
No 490
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.53 E-value=0.00074 Score=52.60 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.7
Q ss_pred eEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
.+++|+|++|+||||++..|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998654
No 491
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.52 E-value=0.00017 Score=49.27 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHHcC
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl 70 (121)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988864
No 492
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.52 E-value=0.0017 Score=47.50 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.7
Q ss_pred CeEEEEECCCCchHHHHHHHHHcC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
|..+.|.|+.|+|||||++.++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999998764
No 493
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.49 E-value=0.0015 Score=48.24 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.1
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
..+.|.||+|+|||||++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 357899999999999999998754
No 494
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.49 E-value=0.00099 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCchHHHHHHHHHcC
Q psy16345 46 PGELLAVMGPSGCGKTTLLNCLAGR 70 (121)
Q Consensus 46 ~G~~~~liG~nGsGKSTLl~~l~gl 70 (121)
++..++++|.+|+|||||++.|.+.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999885
No 495
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0016 Score=49.95 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=28.5
Q ss_pred EEEEECCCCchHHHHHHHHHcCCC-----------CCccEEEECCEe
Q psy16345 49 LLAVMGPSGCGKTTLLNCLAGRVK-----------LDSGVIRLNKER 84 (121)
Q Consensus 49 ~~~liG~nGsGKSTLl~~l~gl~~-----------~~~G~i~~~g~~ 84 (121)
.+||+|...+|||||++.|++--. |..|.+.+.|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 689999999999999999998532 334777777654
No 496
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.46 E-value=0.0015 Score=48.10 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCchHHHHHHHHHcCCC
Q psy16345 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVK 72 (121)
Q Consensus 44 i~~G~~~~liG~nGsGKSTLl~~l~gl~~ 72 (121)
+..|.-+.|.||.|+|||+|++.++..+.
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 33467789999999999999999998554
No 497
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.46 E-value=0.0016 Score=49.06 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.9
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
...+.|.||+|+||||+.+.|+..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999999765
No 498
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.45 E-value=0.0044 Score=46.43 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=28.1
Q ss_pred CCcceEEeeEEEEeCCeEEEEECCCCchHHHHHHHHHc
Q psy16345 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69 (121)
Q Consensus 32 ~~~~~l~~vsl~i~~G~~~~liG~nGsGKSTLl~~l~g 69 (121)
.....+|..-.+ -.|.-+.|.|+||+||||+.-.+..
T Consensus 133 a~~~~~H~~~v~-~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLE-VFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEE-ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344567775444 5688899999999999999877654
No 499
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.44 E-value=0.0018 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEECCCCchHHHHHHHHHcCC
Q psy16345 48 ELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 48 ~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
-.++|+|.+|+|||||++.+.|-.
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
No 500
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.44 E-value=0.0013 Score=53.29 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.2
Q ss_pred CeEEEEECCCCchHHHHHHHHHcCC
Q psy16345 47 GELLAVMGPSGCGKTTLLNCLAGRV 71 (121)
Q Consensus 47 G~~~~liG~nGsGKSTLl~~l~gl~ 71 (121)
--+++|+|+.++|||||++.|.|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3568999999999999999999864
Done!