RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16345
(121 letters)
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 76.8 bits (190), Expect = 5e-18
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
L LS + P+L D+S + PGE+L ++G SGCGKTTLL CLAG + DSG I L+
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64
Query: 82 KERLNKR------WKRKICYVLQQDIFFPELTLRQ 110
+ + + +R++ Y++Q+ + FP LT+ +
Sbjct: 65 GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR 99
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 75.7 bits (187), Expect = 7e-18
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
+ + + ILK +S + G+ + G +G GKTTLLN L SG + L
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 82 KERLNK------RWKRKICYV---LQQDIFFPE 105
+ K ++ I +V L + E
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 71.5 bits (176), Expect = 4e-16
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRK 92
++ VS ++ GE++ ++GPSG GKTT+L +AG + G + + +R+ KR
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88
Query: 93 ICYVLQQDIFFPELTLRQ 110
+ V Q F +T+
Sbjct: 89 VGLVFQNYALFQHMTVYD 106
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 70.0 bits (172), Expect = 2e-15
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 5 IPSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
I + R + + L L+ G +K GE++ ++GP+G GKTT +
Sbjct: 271 IKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFV 329
Query: 65 NCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADEDE 121
LAG + G I + + Y Q E T+ + L A +
Sbjct: 330 KMLAGVEEPTEGKIEWDL---------TVAYKPQYIKADYEGTVYELLSKIDASKLN 377
Score = 45.4 bits (108), Expect = 8e-07
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
+ VVK G ++ ++GP+G GK+T + LAG++
Sbjct: 33 VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 69.3 bits (170), Expect = 3e-15
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
L +G K GE++ ++GP+G GKTT L G + D G + K+ L+ +
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK---- 335
Query: 93 ICYVLQQDIFF-PELTLRQTLEVSIADE 119
Q IF + T++Q LE + D
Sbjct: 336 -----PQRIFPNYDGTVQQYLENASKDA 358
Score = 52.7 bits (127), Expect = 2e-09
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 37 LKDVS-GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
K K +L V+G +G GKTT+L LAG + + G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 67.6 bits (166), Expect = 5e-15
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
+ + + ++ + G++LAV+G +GCGK+TLL+ L G + G I + +
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---------QS 67
Query: 93 ICYVLQQ-DIFFP 104
I +V Q F
Sbjct: 68 IGFVPQFFSSPFA 80
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 68.0 bits (167), Expect = 6e-15
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKIC 94
L ++S V+ GE ++GP+G GKT L +AG DSG I L+ + + K I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 95 YVLQQDIFFPELTLRQ 110
+V Q FP + +++
Sbjct: 76 FVYQNYSLFPHMNVKK 91
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 66.7 bits (164), Expect = 8e-15
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
L L V +K + V G+++ ++G +G GKTT L+ +AG V+ G I N
Sbjct: 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 82 KERL-----NKRWKRKICYVLQQDIFFPELTLRQTLEV 114
+ + + + I V + FPELT+ + L +
Sbjct: 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMM 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 68.1 bits (167), Expect = 1e-14
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 6 PSLPPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
+ E + L T +L G E+L +MG +G GKTTL+
Sbjct: 338 IADATEDLQNDSASRAFSYPSLKKTQGDF-VLNVEEGEFSDSEILVMMGENGTGKTTLIK 396
Query: 66 CLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTLRQTLEVSIADE 119
LAG +K D G K + Q+ T+RQ I +
Sbjct: 397 LLAGALKPDEGQD---------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441
Score = 53.9 bits (130), Expect = 8e-10
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 8 LPPEKYPLS-----HRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTT 62
+ +K P + P L + ++ +PG++L ++G +G GK+T
Sbjct: 60 ICVKKCPFDAIQIINLPTNLE-AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKST 118
Query: 63 LLNCLAGRVKLDSGVIRLNKE 83
L LAG+ K + G E
Sbjct: 119 ALKILAGKQKPNLGRFDDPPE 139
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 65.3 bits (160), Expect = 3e-14
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 31 LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK 90
+ + L +SG V+ GE+L ++GP+G GK+TLL +AG + G I+ + L W
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLE-AWS 67
Query: 91 -----RKICYVLQQDIFFPELTLRQTLE 113
Y+ QQ + L
Sbjct: 68 ATKLALHRAYLSQQQTPPFATPVWHYLT 95
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 66.2 bits (162), Expect = 4e-14
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
L+ G ++ GE++ ++GP+G GKTT + LAG + G + +
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL---------T 418
Query: 93 ICYVLQQDIFFPELTLRQTLEVSIADE 119
+ Y Q E T+ + L + +
Sbjct: 419 VAYKPQYIKAEYEGTVYELLSKIDSSK 445
Score = 53.1 bits (128), Expect = 1e-09
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 27 LSVTLDK--------RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
L LD+ + +VK G ++ ++GP+G GKTT + LAG++ +
Sbjct: 89 LPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148
Query: 79 RLNKE 83
+ +
Sbjct: 149 NDSWD 153
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 64.8 bits (159), Expect = 4e-14
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
L+ ++ ++ G ++ GP+G GKTTLL ++ +K G I N + K K KI ++
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-VKGKIFFL 83
Query: 97 LQQDIFFPELTLRQTLE 113
++ I ++++ L+
Sbjct: 84 PEEIIVPRKISVEDYLK 100
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 63.7 bits (156), Expect = 1e-13
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLD-SGVIRLNKERLNK 87
ILK +S VK GE ++++G SG GK+TLL L G+V L+ V N++ L+
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 88 RWKRKICYVLQQDIFFPELT 107
RK+ +V Q PELT
Sbjct: 79 LRNRKLGFVFQFHYLIPELT 98
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 63.3 bits (155), Expect = 2e-13
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKER 84
D IL+D+S +P ++A GPSG GK+T+ + L AG + +D I
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID----N 68
Query: 85 LNKRWKRK-ICYVLQQDIFF 103
++ R I +V Q
Sbjct: 69 ISLENWRSQIGFVSQDSAIM 88
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 62.6 bits (153), Expect = 3e-13
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR--WKRKICYVLQQDIFFP 104
+ ++GP+G GK+ L +AG VK D G +RLN + +R I +V Q FP
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP 83
Query: 105 ELTLRQ 110
L++ +
Sbjct: 84 HLSVYR 89
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 62.7 bits (153), Expect = 4e-13
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 9 PPEKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
+ S + +L P+LKD++ ++ G+LLAV G +G GKT+LL +
Sbjct: 26 KQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85
Query: 69 GRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99
G ++ G I+ + +I + Q
Sbjct: 86 GELEPSEGKIKHSG---------RISFCSQN 107
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 61.6 bits (150), Expect = 1e-12
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 30 TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW 89
+R L++++ V GE + ++GP+G GKTTLL ++G + SG I +N + K
Sbjct: 14 KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRKI- 70
Query: 90 KRKICYVLQQ-DIFFPELTLRQ 110
+ I Y + + +T+
Sbjct: 71 RNYIRYSTNLPEAYEIGVTVND 92
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 61.0 bits (149), Expect = 1e-12
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLN---CL----AGRVKLD-SGVIRLNKERLN 86
LK+V+ +K GE +++MGPSG GK+T+LN CL G V +D L+ + L
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 87 KRWKRKICYVLQQ 99
K + KI +V QQ
Sbjct: 79 KIRRDKIGFVFQQ 91
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 60.6 bits (148), Expect = 2e-12
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKR 91
P+LKD++ ++ G+LLAV G +G GKT+LL + G ++ G I+ +
Sbjct: 19 GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------- 69
Query: 92 KICYVLQQ 99
+I + Q
Sbjct: 70 RISFCSQF 77
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 61.4 bits (150), Expect = 2e-12
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 14/76 (18%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGV-IR-LNK 82
K+P+LKD++ +KPG+ +A++GP+G GKTT++N L G++ +D G+ IR + +
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD-GIDIRKIKR 424
Query: 83 ERLNKRWKRKICYVLQ 98
L + I VLQ
Sbjct: 425 SSL----RSSIGIVLQ 436
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 61.5 bits (150), Expect = 2e-12
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 2 VSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGC 58
+P L F + RP I +D S + G + A++GPSG
Sbjct: 322 EPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGS 381
Query: 59 GKTTLLNCL-------AGRVKLDSGV-IRLNKERLNKRWKR-KICYVLQQDIFF 103
GK+T+L+ L +G + LD G IR +LN W R KI V Q+ I F
Sbjct: 382 GKSTVLSLLLRLYDPASGTISLD-GHDIR----QLNPVWLRSKIGTVSQEPILF 430
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 60.3 bits (147), Expect = 2e-12
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKR 91
P L ++ + G L+AV+G GCGK++LL+ L + G + +
Sbjct: 16 SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--------- 66
Query: 92 KICYVLQQ 99
+ YV QQ
Sbjct: 67 SVAYVPQQ 74
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 60.2 bits (147), Expect = 3e-12
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIR 79
L L ++D ILK V+ VV GE+ A+MGP+G GK+TL LAG + ++ G I
Sbjct: 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL 63
Query: 80 LNKERL 85
L+ E +
Sbjct: 64 LDGENI 69
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 60.2 bits (147), Expect = 3e-12
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKER 84
D IL +++ +K GE++ ++G SG GK+TL + G+V +D +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA----L 75
Query: 85 LNKRWKRK-ICYVLQQDIFF 103
+ W R+ + VLQ ++
Sbjct: 76 ADPNWLRRQVGVVLQDNVLL 95
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 60.7 bits (148), Expect = 3e-12
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 15/80 (18%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGV-IR-LNK 82
++ PILKD++ ++ GE +A +G SG GK+TL+N + +G++ +D G I+
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID-GHNIKDFLT 410
Query: 83 ERLNKRWKRKICYVLQQDIF 102
L R +I V QD
Sbjct: 411 GSL--R--NQIGLVQ-QDNI 425
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 59.1 bits (144), Expect = 7e-12
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK--LDSGVIR 79
L L V+++ + IL+ +S V PGE+ A+MGP+G GK+TL LAGR + G +
Sbjct: 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 80
Query: 80 LNKERL 85
+ L
Sbjct: 81 FKGKDL 86
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 59.9 bits (146), Expect = 7e-12
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 14/81 (17%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGV-IR-LNK 82
+ P+L V+ VKPG L+AV+G +G GK+TL+N + GRV++D + +R +
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD-ELDVRTVKL 412
Query: 83 ERLNKRWKRKICYVLQQDIFF 103
+ L + I V Q+ + F
Sbjct: 413 KDL----RGHISAVPQETVLF 429
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 59.5 bits (145), Expect = 8e-12
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 6 PSLPPEKYPLSHRPLELVFSGLSVT--LDKRPILKDVSGVVKPGELLAVMGPSGCGKTTL 63
KY E+ ++ T ++P L VS + G+ +A++G SG GK+T+
Sbjct: 326 TERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTI 385
Query: 64 LNCL-------AGRVKLDSGV-IR-LNKERLNKRWKRKICYVLQQDIFF 103
N +G + LD G +R L +R V Q F
Sbjct: 386 ANLFTRFYDVDSGSICLD-GHDVRDYKLTNL----RRHFALVSQNVHLF 429
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 59.5 bits (145), Expect = 9e-12
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGV-IR-LNK 82
+ P L++++ + G+ +A++G SG GK+T+ + + G + +D G +R
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD-GHDLREYTL 412
Query: 83 ERLNKRWKRKICYVLQQDIFF 103
L + ++ V Q F
Sbjct: 413 ASL----RNQVALVSQNVHLF 429
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 59.3 bits (144), Expect = 1e-11
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 12/77 (15%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
P+L+ +S VK G+ LA++G SGCGK+T++ L AG V LD I+ +LN
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK----QLNV 1102
Query: 88 RWKRK-ICYVLQQDIFF 103
+W R + V Q+ I F
Sbjct: 1103 QWLRAQLGIVSQEPILF 1119
Score = 58.9 bits (143), Expect = 1e-11
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 2 VSNIPSLPPEKYPLSHRPLELVFSGLSVTLDKRP---ILKDVSGVVKPGELLAVMGPSGC 58
+I S + + L F + + R ILK ++ VK G+ +A++G SGC
Sbjct: 368 KPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427
Query: 59 GKTTLLNCL-------AGRVKLDSGVIRLNKERLNKRWKRKICYVLQQD 100
GK+T + + G V +D IR +N R+ R+I V+ Q+
Sbjct: 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIR----TINVRYLREIIGVVSQE 472
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 58.8 bits (143), Expect = 1e-11
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK----- 90
+LK ++ ++ GE++ V+GPSG GK+T L CL D G I ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 91 -RKICYVLQQDIFFPELT 107
++ V Q+ FP +T
Sbjct: 99 REEVGMVFQRFNLFPHMT 116
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 58.4 bits (142), Expect = 2e-11
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW--- 89
K L +V+ ++ GE ++GPSG GKTT + +AG +G + + +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 90 ----KRKICYVLQQDIFFPELTLRQ 110
RKI V Q +P LT +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFE 101
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 58.4 bits (142), Expect = 2e-11
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIR 79
D R L+DVS V PG+ LA++GPSG GK+T+L L +G +++D I
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 57.6 bits (140), Expect = 2e-11
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL------AGRVKLDSGVIRLNKERLNK 87
LK ++ + G A++G +G GK+T+ L G +K+ + + N+
Sbjct: 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVN----KYNR 88
Query: 88 RWKRKICYVLQQDIF 102
R I ++ QD
Sbjct: 89 NSIRSIIGIVPQDTI 103
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 57.5 bits (140), Expect = 3e-11
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVKLDSGVIRLNKERLNK 87
+L+ ++ + PG++ A++GP+G GK+T+ L G+V LD + + +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV----QYDH 88
Query: 88 RWKR-KICYVLQQDIFF 103
+ ++ V Q+ + F
Sbjct: 89 HYLHTQVAAVGQEPLLF 105
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 57.1 bits (139), Expect = 4e-11
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKR 88
L VS V G++ ++GP+G GK+TL+N + G +K D G + + + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 56.4 bits (137), Expect = 7e-11
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
+V L + K+ ILK +S ++ GE+ ++GP+G GKTT L ++ +K SG++ +
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 82 -----KERLNKRWKRKICYVLQQDIFFPELTLRQTLE 113
+E ++ I Y+ ++ + + + L
Sbjct: 76 GKNVVEEP--HEVRKLISYLPEEAGAYRNMQGIEYLR 110
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 56.0 bits (136), Expect = 9e-11
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
+LK VS + G++++++G SG GK+T L C+ K G I +N + +N +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii}
Length = 362
Score = 54.9 bits (133), Expect = 3e-10
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
E+ + L +++ +K GE +A++GPSG GK+TLL +AG K SG I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 81 NKERLN 86
+++ +
Sbjct: 63 DEKDVT 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 55.0 bits (132), Expect = 4e-10
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
+P + D++ +AV+GP+G GK+TL+N L G + SG + ++ +
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE-------NCR 737
Query: 93 ICYVLQQDIFFPELTLRQT 111
I Y+ Q E L +T
Sbjct: 738 IAYIKQHAFAHIESHLDKT 756
Score = 46.2 bits (109), Expect = 4e-07
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
+L S+ + +L +K + GP+GCGK+TL+ +A
Sbjct: 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG---QVDGFPT 491
Query: 81 NKERLNKRWKRKICYVLQQDIFFPE 105
+E + YV
Sbjct: 492 QEE-------CRTVYVEHDIDGTHS 509
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 54.5 bits (132), Expect = 4e-10
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
+ + + ++++S VK GE + ++GPSGCGKTT L +AG + G I +
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 81 NKERLN 86
+ +
Sbjct: 63 GDKLVA 68
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport,
alpha and beta proteins (A/B) TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 54.5 bits (132), Expect = 5e-10
Identities = 27/66 (40%), Positives = 34/66 (51%)
Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
+ L K + VS VK GE +A++GPSGCGKTT L LAG K SG I
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62
Query: 81 NKERLN 86
+ +N
Sbjct: 63 DDVLVN 68
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 54.1 bits (131), Expect = 6e-10
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 32 DKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLN----- 86
D LK ++ +K GE+ A++G +G GK+TL G +K SG I + + ++
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 87 -KRWKRKICYVLQQDIFFPE 105
+ + I V Q P+
Sbjct: 79 IMKLRESIGIVFQ----DPD 94
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 53.8 bits (130), Expect = 8e-10
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 21 ELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
E+ L+ + ++ +K GE L ++GPSGCGKTT L +AG + G I
Sbjct: 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 81 NKERLN 86
+
Sbjct: 71 GDRDVT 76
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 53.0 bits (128), Expect = 1e-09
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 30 TLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRW 89
T ++ L++VS V+ GE L V G +G GK+TLL +AG ++ SG + + ER
Sbjct: 16 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE 75
Query: 90 KR-KICYVLQQDIFFPE 105
R I Q +PE
Sbjct: 76 IRRNIGIAFQ----YPE 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 6e-09
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 3 SNIPSLPPEKYPLSHRPLE---LVFSGLSVTLDKRP----ILKDVSGVVKPGELLAVMGP 55
PS+ Y L VF+ +V+ R L+ ++P + + + G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 56 SGCGKTTLLNCLAGRVKLDSGVIRLN 81
G GKT +A V L V
Sbjct: 159 LGSGKT----WVALDVCLSYKVQCKM 180
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 49.9 bits (120), Expect = 2e-08
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 28 SVTLD---KR----PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
SV L K + KD++ + GE + +GPSGCGK+TLL +AG + SG + +
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 81 NKERLN 86
++R+N
Sbjct: 63 GEKRMN 68
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 43.9 bits (104), Expect = 2e-06
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 1 VVSNIPSLPPEKYPLSHRPLELVFSGLSV--TLDKRPILKDVSGVVKPGELLAVMGPSGC 58
++ N + +P ++ L+ T IL+++S + PG+ + ++G +G
Sbjct: 2 LIENSHVKKDDIWPSGG---QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGS 58
Query: 59 GKTTLLNCLAGRVKLDSGVIRLNKERLNK----RWKRKICYVLQQDIFFPELTLRQTL 112
GK+TLL+ + G I+++ + +W++ + Q+ F T R+ L
Sbjct: 59 GKSTLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIF-SGTFRKNL 114
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 42.7 bits (101), Expect = 5e-06
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 24 FSGLSVT--LDKRPI--LKDVSGVVKPGELLAVMGPSGCGKTTLLNCL-------AGRVK 72
S ++ R I L +VS V G++ V+G SG GK+TL+ C+ G V
Sbjct: 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 73 LDSGVI-RLNKERLNKRWKRKICYVLQQ 99
+D + L++ L K +R+I + Q
Sbjct: 87 VDGQELTTLSESELTKA-RRQIGMIFQH 113
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 38.5 bits (89), Expect = 1e-04
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70
+ +MG SG GK+ + + +A +
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 38.1 bits (88), Expect = 2e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70
+ + VMG SG GK+++ +A
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEA 41
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 37.4 bits (86), Expect = 3e-04
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGR 70
+P + VMG SG GKTT+ + +A
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 36.4 bits (84), Expect = 7e-04
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGR---VKLDSGVIR 79
L+ V G GKTTL LA L +
Sbjct: 7 LIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK 40
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 36.2 bits (84), Expect = 8e-04
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGR 70
L+ + GP C K+T+ L+
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKE 24
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 35.8 bits (83), Expect = 0.001
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 16/72 (22%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTL 108
+L + G S GKTTL N L+ + L ++ V D E
Sbjct: 24 VLGIDGLSRSGKTTLANQLS--------------QTLREQGIS--VCVFHMDDHIVERAK 67
Query: 109 RQTLEVSIADED 120
R E
Sbjct: 68 RYHTGNEEWFEY 79
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 51 AVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+ G SG GK++LLN + +KL +
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEV 200
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 51 AVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
G SG GK++LLN ++ + L + I
Sbjct: 177 VFAGQSGVGKSSLLNAISPELGLRTNEI 204
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 35.1 bits (80), Expect = 0.002
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
G +L + G G GK+T+ LA +
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 35.4 bits (81), Expect = 0.002
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
+AV G +G GK++ +N L G + G +
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAK 101
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCL 67
+ + + G L+ + GPSG GK T+ +
Sbjct: 2 NAMTERGLLIVLSGPSGVGKGTVREAV 28
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 34.4 bits (80), Expect = 0.005
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 37/108 (34%)
Query: 34 RP-ILKDVSG---VVKPGELLAVM------------GPSGCGKTTLLNCLAGRVKLD--- 74
RP L G ++ G+ L GP G GKTTL +A D
Sbjct: 21 RPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVER 80
Query: 75 -----SGV--IR--LNKERLNKRWKRK-ICYV--------LQQDIFFP 104
SGV IR + + R N+ R+ I +V QQD F P
Sbjct: 81 ISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLP 128
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 34.1 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCL 67
G ++ + GPS GK+T++ CL
Sbjct: 18 AVGRVVVLSGPSAVGKSTVVRCL 40
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 33.6 bits (78), Expect = 0.006
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCL 67
+ G L+ + GPSG GK T+ +
Sbjct: 4 EKGLLIVLSGPSGVGKGTVRKRI 26
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 34.0 bits (77), Expect = 0.006
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 22 LVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
+V+S ++ R +LKD V +++ V G GCGKT + RV + +I +
Sbjct: 136 VVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKE---ILSRVNFEEDLILVP 192
Query: 82 KERLNKRWKRKI 93
+ + +R+
Sbjct: 193 GRQAAEMIRRRA 204
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 33.8 bits (78), Expect = 0.009
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAG 69
G + G SG GK++LLN L G
Sbjct: 215 GRISIFAGQSGVGKSSLLNALLG 237
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 33.3 bits (77), Expect = 0.010
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCL 67
G +L + PSGCGKTT+ N L
Sbjct: 25 SVGVILVLSSPSGCGKTTVANKL 47
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 47 GELLAVMGPSGCGKTTLLNCL 67
+ + GPSG GK+TLL L
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKL 24
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 32.9 bits (76), Expect = 0.013
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCL 67
G + L + GPSG GK TL+ L
Sbjct: 18 GSMNNIYPLVICGPSGVGKGTLIKKL 43
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 32.9 bits (76), Expect = 0.014
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCL 67
S + L + PSG GKT+L+ L
Sbjct: 1 SNAMNKANLFIISAPSGAGKTSLVRAL 27
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.9 bits (75), Expect = 0.016
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 52 VMGPSGCGKTTLLNCLAG 69
++G +GCGKT +
Sbjct: 928 LVGKAGCGKTATWKTVID 945
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.8 bits (74), Expect = 0.016
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 16 SHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
+H+P+ ++ + + + +V G + A++ P G GK+ L LA ++
Sbjct: 3 THKPINIL-EAFAAAPPPLDYV--LPNMV-AGTVGALVSPGGAGKSMLALQLAAQI 54
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 32.9 bits (74), Expect = 0.016
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 52 VMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK-RKICYVLQQDIFFPELTL 108
V+G SG GK+TL+N L VI E++ + + +++ LT+
Sbjct: 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 32.8 bits (74), Expect = 0.016
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 42 GVVKPGELLAVM--GPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQ 99
G + G +M G SG GK+TL+N L + + ++++
Sbjct: 1 GPLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 60
Query: 100 DIFFPELTL 108
LT+
Sbjct: 61 GGVQLLLTI 69
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 32.5 bits (75), Expect = 0.016
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 51 AVMGPSGCGKTTLLNCLAG 69
+ GPSG GK+++L+ L G
Sbjct: 169 ILAGPSGVGKSSILSRLTG 187
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 32.6 bits (75), Expect = 0.017
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
G+ + + SG GK+TLL + D V+ L ER
Sbjct: 71 GQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 32.8 bits (75), Expect = 0.017
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTL 108
L+ V G + GK+T+ + + L + + +R ++ +L QD F+ LT
Sbjct: 27 LIGVSGGTASGKSTVCEKI---------MELLGQNEVEQRQRK--VVILSQDRFYKVLTA 75
Query: 109 RQT 111
Q
Sbjct: 76 EQK 78
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 32.5 bits (75), Expect = 0.019
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCL 67
G L V PSG GK++L+ L
Sbjct: 14 AQGTLYIVSAPSGAGKSSLIQAL 36
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 32.8 bits (75), Expect = 0.020
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 52 VMGPSGCGKTTLLNCLAGRVKLDSGVI 78
V+G + GKTT LN + + D+ V+
Sbjct: 265 VVGETASGKTTTLNAIMMFIPPDAKVV 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.024
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 15/62 (24%)
Query: 6 PSLPPEKYPLSHRPLELVFSGLS------VTLDKRPILKDVSGVVKPGELLAVM-GPSGC 58
PS P+K L P+ G+ VT + G PGEL + + G +G
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA-------KLLG-FTPGELRSYLKGATGH 273
Query: 59 GK 60
+
Sbjct: 274 SQ 275
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 32.1 bits (74), Expect = 0.025
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCL 67
L V GPSG GK TL+ +
Sbjct: 10 ARIPPLVVCGPSGVGKGTLIKKV 32
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 32.2 bits (74), Expect = 0.025
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRV 71
G PG L V GP GKTTL
Sbjct: 16 GFA-PGVLTQVYGPYASGKTTLALQTGLLS 44
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 31.9 bits (72), Expect = 0.025
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGR 70
++ + GP G GKT + L R
Sbjct: 7 IIWINGPFGVGKTHTAHTLHER 28
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 32.3 bits (73), Expect = 0.026
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSG 76
+ ++G +G GK+ N + GR SG
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSG 58
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 32.0 bits (73), Expect = 0.028
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 10 PEKYPLSHRPLEL--VFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
P K H E ++ L +K + G+ + V G +G GKTT + +
Sbjct: 135 PSKTTYPHSFFEEQGFYNLLDNKEQAISAIK---DGIAIGKNVIVCGGTGSGKTTYIKSI 191
Query: 68 AGRV 71
+
Sbjct: 192 MEFI 195
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 32.1 bits (73), Expect = 0.030
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 54 GPSGCGKTTLLNCLAGRVKL 73
GP G GKT + +A
Sbjct: 245 GPPGTGKTLIARAVANETGA 264
Score = 27.1 bits (60), Expect = 1.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 54 GPSGCGKTTLLNCLAG 69
GP GCGKT L +A
Sbjct: 518 GPPGCGKTLLAKAIAN 533
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.4 bits (72), Expect = 0.037
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCL 67
+ + L ++G SG G++ + N L
Sbjct: 17 QGRKTLVLIGASGVGRSHIKNAL 39
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.9 bits (71), Expect = 0.037
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVIR 79
L V+G GK+T LN L G L S V
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNP 101
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 31.6 bits (71), Expect = 0.037
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 49 LLAVMGPSGCGKTTLLNCL 67
+L+++G S GKTTL+ +
Sbjct: 4 ILSIVGTSDSGKTTLITRM 22
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 31.7 bits (72), Expect = 0.040
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELT 107
L+ V G + GK+++ + L + ++ R K+ +L QD F+ LT
Sbjct: 24 LIGVSGGTASGKSSVCAKIV---------QLLGQNEVDYRQKQ--VVILSQDSFYRVLT 71
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 31.6 bits (72), Expect = 0.043
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 47 GELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
G+ + + SG GK+ LL +A + D V+ L ER
Sbjct: 157 GQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGER 194
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 31.3 bits (72), Expect = 0.045
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 47 GELLAVMGPSGCGKTTLLNCL 67
+ L ++G G G+ + N L
Sbjct: 5 RKTLVLLGAHGVGRRHIKNTL 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 31.6 bits (72), Expect = 0.047
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 22/80 (27%)
Query: 11 EKYPLSHRPLELVFSGLSVTLDK----RPILKDVSGVVKPGEL--LAVMGPSGCGKTTLL 64
EKY RP LD I+K + VK G + L GP G GKTT
Sbjct: 17 EKY----RP---------QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAA 63
Query: 65 NCLAGRV---KLDSGVIRLN 81
LA + + LN
Sbjct: 64 LALARELFGENWRHNFLELN 83
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 31.3 bits (70), Expect = 0.049
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 46 PGELLAVMGPSGCGKTTLLNCLAGR 70
++ + G S GK+ ++ CL
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSV 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 31.1 bits (71), Expect = 0.050
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLL 64
G+ G +A+ G G GKT
Sbjct: 19 GIP-QGFFIALTGEPGTGKTIFS 40
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 31.1 bits (71), Expect = 0.056
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 52 VMGPSGCGKTTLLNCLAGRV 71
V G +G GKTTL+ L +
Sbjct: 180 VAGETGSGKTTLMKALMQEI 199
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.5 bits (70), Expect = 0.072
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 49 LLAVMGPSGCGKTTLLNCL 67
+ + GPSG GK+TLL L
Sbjct: 3 PIVISGPSGTGKSTLLKKL 21
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 30.6 bits (68), Expect = 0.076
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 49 LLAVMGPSGCGKTTLLNCL 67
LLA SG GKTTLL L
Sbjct: 8 LLAFAAWSGTGKTTLLKKL 26
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.4 bits (69), Expect = 0.085
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLL 64
G+ ++ + G G GKT
Sbjct: 19 GIP-ERNVVLLSGGPGTGKTIFS 40
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 30.3 bits (69), Expect = 0.092
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRL 80
++ + G + GKTTL LA + ++ +
Sbjct: 8 VIGIAGGTASGKTTLAQALARTLGERVALLPM 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 30.3 bits (69), Expect = 0.092
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 22/80 (27%)
Query: 11 EKYPLSHRPLELVFSGLSVTLD----KRPILKDVSGVVKPGEL--LAVMGPSGCGKTTLL 64
EKY RP TLD + +++ + G V+ + L GP G GKT
Sbjct: 9 EKY----RP---------RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55
Query: 65 NCLAGRV---KLDSGVIRLN 81
LA + I +N
Sbjct: 56 IALARDLFGENWRDNFIEMN 75
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 30.7 bits (68), Expect = 0.092
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 18 RPLELVFS----GLSVTLDKRPILKDVSGVV-KPGELLAVMGPSGCGKTTLLNCLAGR 70
P++++ + + V K ++V G GK+ L++ +
Sbjct: 33 GPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 30.6 bits (68), Expect = 0.096
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWK-RKICYVLQQDIFFPELTL 108
L V+G SG GK+TL+N L VI E++ + + +++ LT+
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.4 bits (68), Expect = 0.098
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 49 LLAVMGPSGCGKTTLLNCL 67
+ V+G GKTTL+
Sbjct: 6 VWQVVGYKHSGKTTLMEKW 24
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 30.6 bits (69), Expect = 0.11
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 54 GPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
GP G GKTT + +A +L ++ N
Sbjct: 84 GPPGIGKTTAAHLVAQ--ELGYDILEQN 109
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 30.2 bits (68), Expect = 0.12
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 15 LSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
++++P+ V SG+ D+ +++ G G + + G +G GKTT
Sbjct: 4 MAYQPVRRVKSGIP-GFDE--LIEG--GFP-EGTTVLLTGGTGTGKTTFA 47
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 30.4 bits (69), Expect = 0.12
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 42 GVVKPGELLAVMGPSGC 58
GV PG+L+ MG S C
Sbjct: 283 GVTTPGKLVMAMGTSIC 299
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.0 bits (67), Expect = 0.12
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 51 AVMGPSGCGKTTLLNCLA 68
A+ G G GK+T+ ++
Sbjct: 4 AIFGTVGAGKSTISAEIS 21
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 30.3 bits (68), Expect = 0.13
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLL 64
G ++ G +G GKT L+
Sbjct: 277 GFF-KDSIILATGATGTGKTLLV 298
Score = 29.9 bits (67), Expect = 0.19
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLL 64
G+ G V G SG GKT
Sbjct: 35 GLP-IGRSTLVSGTSGTGKTLFS 56
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 30.2 bits (68), Expect = 0.13
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 11 EKYPLSHRPLELVFSGLSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
+KY RP L + LS + LK +S + L + GP+G GK T L
Sbjct: 6 DKY----RPKSL--NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59
Query: 71 V-KLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELT 107
+ ++++ + RK+ + + E+T
Sbjct: 60 IFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEIT 97
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 30.0 bits (67), Expect = 0.14
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 51 AVMGPSGCGKTTLLNCLA 68
+ G G GKTT LN
Sbjct: 24 LIEGNIGSGKTTYLNHFE 41
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 30.0 bits (68), Expect = 0.14
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 44 VKPGELLAVMGPSGCGKTTLLNCLA 68
K + L + G G GKT LL +A
Sbjct: 51 GKKMKGLYLHGSFGVGKTYLLAAIA 75
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 30.0 bits (68), Expect = 0.15
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 22/80 (27%)
Query: 11 EKYPLSHRPLELVFSGLSVTLD----KRPILKDVSGVVKPGEL--LAVMGPSGCGKTTLL 64
EKY RP TLD + +++ + G V+ + L GP G GKT
Sbjct: 9 EKY----RP---------RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55
Query: 65 NCLAGRV---KLDSGVIRLN 81
LA + I +N
Sbjct: 56 IALARDLFGENWRDNFIEMN 75
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.0 bits (67), Expect = 0.16
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 52 VMGPSGCGKTTLLNCL 67
+G +G GKTTL
Sbjct: 19 FVGTAGSGKTTLTGEF 34
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 29.9 bits (67), Expect = 0.17
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+ VMG G GK++ +N + G +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPF 70
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.6 bits (66), Expect = 0.18
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 49 LLAVMGPSGCGKTTLLNCLA 68
+++V G SG G +T+ +
Sbjct: 7 IISVTGSSGAGTSTVKHTFD 26
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 29.8 bits (67), Expect = 0.18
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 50 LAVMGPSGCGKTTLLNCLA 68
L + G G GK+ LL +A
Sbjct: 155 LYLYGDMGIGKSYLLAAMA 173
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.4 bits (65), Expect = 0.23
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDIFFPELTL 108
L V+G SG GK+TL+N L + + ++++ LT+
Sbjct: 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 92
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 29.3 bits (65), Expect = 0.26
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 50 LAVMGPSGCGKTTLLNCLA 68
L++ G GK+T + L
Sbjct: 5 LSIEGNIAVGKSTFVKLLT 23
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 29.0 bits (65), Expect = 0.29
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 49 LLAVMGPSGCGKTTLLNCLA 68
++ + G + GKTTL L
Sbjct: 23 IIGISGVTNSGKTTLAKNLQ 42
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 29.3 bits (65), Expect = 0.30
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
+ + ++ L ++G GK++LL
Sbjct: 21 SRKLEESLENYPLTLLLGIRRVGKSSLLR 49
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 28.9 bits (64), Expect = 0.31
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGR----VKLDSGVIRLNKERL 85
+ +V + + G + GK+ L L R V D ++ +L
Sbjct: 10 NFLVIDKMGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQL 58
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 29.2 bits (65), Expect = 0.31
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 51 AVMGPSGCGKTTLLNCLAGRV 71
++ G GK+ L R
Sbjct: 39 TILAKPGAGKSFTAKMLLLRE 59
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.7 bits (65), Expect = 0.34
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 52 VMGPSGCGKTTLLN--CLAGRVKLDSGVI 78
+MG G GKT L+ ++ G +
Sbjct: 35 IMGAIGSGKTLLIERTIERIGNEVKIGAM 63
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.8 bits (65), Expect = 0.34
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 52 VMGPSGCGKTTLLN--CLAGRVKLDSGVI 78
MG G GKT L+ + K I
Sbjct: 43 FMGAIGSGKTLLIEKLIDNLKDKYKIACI 71
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 29.0 bits (66), Expect = 0.35
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 51 AVMGPSGCGKTTLLNCLAGRVK---LDSG 76
+ GPSG GK TL +A ++ LDSG
Sbjct: 9 TIDGPSGAGKGTLCKAMAEALQWHLLDSG 37
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 28.8 bits (64), Expect = 0.36
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLD 74
+ + G G GKTTL LA + L
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLK 38
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 29.0 bits (66), Expect = 0.37
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
LK++ + G + V G SG GK++L+
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVM 628
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 28.6 bits (64), Expect = 0.38
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 52 VMGPSGCGKTTLLNCLAGRVKLD 74
GP GKTT L + +V
Sbjct: 19 YYGPGLSGKTTNLKWIYSKVPEG 41
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 28.8 bits (64), Expect = 0.38
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGR 70
L + GP+G GK+T LA +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQ 25
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.7 bits (63), Expect = 0.41
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
R + + +P + + G SG GKTT+ + ++ ++ + +
Sbjct: 19 LRSLTRGKKSSKQP-IAILLGGQSGAGKTTIHRIKQK--EFQGNIVIIDGDSFRSQHPHY 75
Query: 93 ICYVLQQDIFFPELT 107
+ + E T
Sbjct: 76 LELQQEYGKDSVEYT 90
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 28.7 bits (65), Expect = 0.42
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
LK+VS + G +AV G SG GK+TL+N
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 28.6 bits (65), Expect = 0.44
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 51 AVMGPSGCGKTTLLNCLAGR---VKLDSG 76
+ GPS GK+++ +A L SG
Sbjct: 6 TIDGPSASGKSSVARRVAAALGVPYLSSG 34
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 28.6 bits (65), Expect = 0.46
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 51 AVMGPSGCGKTTLLNCLAGR---VKLDSG 76
AV GP+G GK+++ LA LD+G
Sbjct: 13 AVDGPAGTGKSSVSRGLARALGARYLDTG 41
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 28.6 bits (65), Expect = 0.47
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 51 AVMGPSGCGKTTLLNCLAGRVK---LDSG 76
A+ GP+ GK+T+ +A LD+G
Sbjct: 20 AIDGPASSGKSTVAKIIAKDFGFTYLDTG 48
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 28.5 bits (63), Expect = 0.47
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+ + G G GK+T +A S +
Sbjct: 10 IYLDGVYGIGKSTTGRVMASAASGGSPTL 38
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.6 bits (63), Expect = 0.47
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 52 VMGPSGCGKTTLLNCL 67
+G +G GK+TL++ L
Sbjct: 47 CVGETGLGKSTLMDTL 62
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.5 bits (63), Expect = 0.51
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 47 GELLAVMGPSGCGKTTLLN 65
+ V+G GK++++
Sbjct: 30 APITLVLGLRRTGKSSIIK 48
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.5 bits (63), Expect = 0.52
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 48 ELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLN 81
+++ +G G GK+T + G +N
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNP---GFYNIN 33
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 28.3 bits (63), Expect = 0.54
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 48 ELLAVMGPSGCGKTTLLNCLAGR 70
L+ + G G GK+T LA
Sbjct: 5 MLIILTGLPGVGKSTFSKNLAKI 27
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 28.6 bits (65), Expect = 0.55
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
L ++ G + +V G SG GK+TL++
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVS 541
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.2 bits (62), Expect = 0.56
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 50 LAVMGPSGCGKTTLLNCLAGR 70
+ + G G GKT++ +A
Sbjct: 13 ILITGTPGTGKTSMAEMIAAE 33
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 28.3 bits (64), Expect = 0.61
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
L+ + G L +V G SG GK+TL+N
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVN 686
Score = 25.6 bits (57), Expect = 5.7
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
L+ V + L+ G SG GK++L
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAF 64
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 27.8 bits (62), Expect = 0.62
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 48 ELLAVMGPSGCGKTTL 63
+++ +G G GK+T
Sbjct: 3 KIILTIGCPGSGKSTW 18
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 28.3 bits (62), Expect = 0.62
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 50 LAVMGPSGCGKTTLLNCLA 68
+++ G GK+T +N L
Sbjct: 27 ISIEGNIAAGKSTFVNILK 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.3 bits (63), Expect = 0.64
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 49 LLAVMGPSGCGKTTL 63
+ + G +GCGK+ L
Sbjct: 149 WVTIYGMAGCGKSVL 163
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.8 bits (62), Expect = 0.68
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 52 VMGPSGCGKTTLLNCLAG 69
+ GP GKT+LL L
Sbjct: 17 IAGPQNSGKTSLLTLLTT 34
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 28.2 bits (64), Expect = 0.70
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 37 LKDVSGVVKPGELLAVMGPSGCGKTTLLN 65
LK+VS + G +AV G SG GK+TL+N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 27.8 bits (63), Expect = 0.70
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 51 AVMGPSGCGKTTLLNCLAGRVK---LDSG 76
A+ GP+ GK+T+ +A + +D+G
Sbjct: 7 ALDGPAAAGKSTIAKRVASELSMIYVDTG 35
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.8 bits (62), Expect = 0.73
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 52 VMGPSGCGKTTLLNCLAG 69
+ GP GKT+LL L
Sbjct: 53 IAGPQNSGKTSLLTLLTT 70
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 28.2 bits (63), Expect = 0.74
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 54 GPSGCGKTTLLNCLAGRVKL 73
GP G GKT + +A
Sbjct: 245 GPPGTGKTLIARAVANETGA 264
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.3 bits (63), Expect = 0.76
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 52 VMGPSGCGKTTLLNCLA 68
++GPSG GKTT
Sbjct: 911 MVGPSGGGKTTSWEVYL 927
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 27.7 bits (62), Expect = 0.81
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
+ G+ L +G G GKT L + G+
Sbjct: 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 27.7 bits (61), Expect = 0.81
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
+ ++G +G GK+ N + + +S +
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKL 52
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 28.0 bits (62), Expect = 0.85
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGR 70
LL +MG +G GK+ L LA
Sbjct: 42 LLVLMGATGTGKSRLSIDLAAH 63
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 27.6 bits (62), Expect = 0.89
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
+ ++ + L+ V GP+G GK+T + +
Sbjct: 15 DKVLELCH--RKMGLILVTGPTGSGKSTTIASM 45
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 27.8 bits (62), Expect = 0.89
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 52 VMGPSGCGKTTLLNCL 67
+G GKT L L
Sbjct: 12 FVGLCDSGKTLLFVRL 27
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 27.7 bits (61), Expect = 0.94
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 51 AVMGPSGCGKTTLLN----CLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
++G +G GK++LL+ L +++ + K+ + + Y+
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYWPLRI-----KDIKKDEFTKVGARDTYI 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 52 VMGPSGCGKTTL----LNCLAGRVKLDSGVIRLN 81
+ G +G GKT + L+ L + + +N
Sbjct: 50 IYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 1.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKR 91
+ + G G GKTTL+ + R+ + + R + KR
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR 44
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.2 bits (60), Expect = 1.1
Identities = 5/40 (12%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 52 VMGPSGCGKTTLLNCLAGRVKLDSGV-----IRLNKERLN 86
+MG GK+++ + ++ + + ++ K+ ++
Sbjct: 25 LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS 64
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 27.5 bits (61), Expect = 1.1
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 23/81 (28%)
Query: 11 EKYPLSHRPLELVFSGLSVTLDK----RPILKDVSGVVKPGEL--LAVMGPSGCGKTTLL 64
EKY RP LD+ + + +K L + GP G GKT+ +
Sbjct: 29 EKY----RP---------KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75
Query: 65 NCLA----GRVKLDSGVIRLN 81
L G + S ++ LN
Sbjct: 76 LALTKELYGPDLMKSRILELN 96
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 27.3 bits (60), Expect = 1.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGV 77
L ++G +G GK+ N + G+ + S +
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRL 51
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.4 bits (61), Expect = 1.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 49 LLAVMGPSGCGKTTLLNCLA 68
L+A+ G G GK+TL N LA
Sbjct: 24 LVALSGAPGSGKSTLSNPLA 43
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 27.4 bits (61), Expect = 1.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 50 LAVMGPSGCGKTTLLNCLAG 69
+ V G G GK+T + LA
Sbjct: 48 VLVFGDRGTGKSTAVRALAA 67
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 27.3 bits (60), Expect = 1.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKL 73
G ++ + V G G GKT L + LA V+L
Sbjct: 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQL 157
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic
initiation factor 3 complex, RNA recognition motif; NMR
{Homo sapiens}
Length = 105
Score = 26.2 bits (58), Expect = 1.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 1 VVSNIPSLPPEKYPLSHRPLELVFS 25
VV N+P + P++ + +FS
Sbjct: 19 VVDNVPQVGPDRLEKLKNVIHKIFS 43
>3n6m_A RNA-dependent RNA polymerase; EV71, RDRP, GTP, transferase; HET:
GTP; 2.50A {Human enterovirus 71} PDB: 3n6l_A* 3n6n_A*
Length = 462
Score = 27.0 bits (59), Expect = 1.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 53 MGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
PSGC T++ N + + + + +I+ K
Sbjct: 286 GMPSGCSGTSIFNSMINNIIIRALLIKTFKG 316
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 26.9 bits (60), Expect = 1.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 58 CGKTTLLNCLAG 69
CGKTTL N L
Sbjct: 12 CGKTTLFNALTN 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 26.9 bits (60), Expect = 1.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 58 CGKTTLLNCLAG 69
GKTTL N L G
Sbjct: 14 SGKTTLFNQLTG 25
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3,
eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo
sapiens}
Length = 81
Score = 25.8 bits (57), Expect = 1.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 1 VVSNIPSLPPEKYPLSHRPLELVFS 25
VV N+P + P++ + +FS
Sbjct: 5 VVDNVPQVGPDRLEKLKNVIHKIFS 29
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 27.1 bits (59), Expect = 1.7
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 34 RPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGV--IRLNKERLNKRW 89
L++ ++G G GKT L L K + + +N
Sbjct: 34 GNWLRNPGH--HYPRAT-LLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase;
2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A*
1xr6_A
Length = 460
Score = 27.0 bits (59), Expect = 1.7
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 53 MGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
PSGC T++ N + + + + V+ K + K
Sbjct: 284 GVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKLKIIAY 325
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 26.7 bits (60), Expect = 1.8
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 58 CGKTTLLNCLAG 69
GK+T+ N L G
Sbjct: 14 VGKSTIFNALTG 25
>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA
polymerase, picornavirus, protease, hydrolase,
transferase; 3.40A {Human poliovirus 1} SCOP: b.47.1.4
e.8.1.4
Length = 644
Score = 27.1 bits (59), Expect = 1.8
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 55 PSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
PSGC T++ N + + + + +++ K K
Sbjct: 470 PSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAY 509
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 26.7 bits (59), Expect = 1.9
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
RP + +G+ P + + + GP G GKT + C+A
Sbjct: 105 LRPDI--FTGLRGPPKGILLFGPPGTGKTLIGKCIA 138
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 26.4 bits (59), Expect = 1.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 58 CGKTTLLNCLAG 69
GK+T+ N L G
Sbjct: 18 VGKSTIFNALTG 29
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 26.5 bits (59), Expect = 2.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 58 CGKTTLLNCLAG 69
GKT+L N L G
Sbjct: 16 VGKTSLFNALTG 27
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 26.5 bits (59), Expect = 2.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 58 CGKTTLLNCLAG 69
GKT+L N + G
Sbjct: 14 SGKTSLFNLITG 25
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 26.5 bits (59), Expect = 2.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 58 CGKTTLLNCLAG 69
GKTT+ N L G
Sbjct: 14 VGKTTIFNALTG 25
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.9 bits (59), Expect = 2.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 54 GPSGCGKTTLLNCL 67
GP+G G TTL +
Sbjct: 52 GPAGTGATTLTKFI 65
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 26.5 bits (59), Expect = 2.2
Identities = 2/18 (11%), Positives = 4/18 (22%)
Query: 41 SGVVKPGELLAVMGPSGC 58
+ + G S
Sbjct: 274 ENANFDRRIALIGGTSTA 291
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 26.2 bits (58), Expect = 2.4
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 51 AVMGPSGCGKTTLLN----CLAGRVKLDSGVIRLNKERLNKRWKRKICYV 96
++G +G GK++LL+ L +++ + K+ + + Y+
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYWPLRI-----KDIKKDEFTKVGARDTYI 71
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 26.5 bits (59), Expect = 2.5
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 49 LLAVMGPSGCGKTTL 63
++ + G +G GK+ L
Sbjct: 4 VIVIAGTTGVGKSQL 18
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.4 bits (58), Expect = 2.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 29 VTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCL 67
VT+ P+ +D L V G +G GK+ LL L
Sbjct: 40 VTVAGVPMPRD-----AEPRHLLVNGATGTGKSVLLREL 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 26.2 bits (58), Expect = 2.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 36 ILKDVSGVVKPGEL--LAVMGPSGCGKTTLLNCLAGRV---KLDSGVIRLN 81
++ V V G+L L GP G GKT+ + LA + + V+ LN
Sbjct: 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 26.1 bits (58), Expect = 2.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 30 TLDKRPILKDVSGVVKPGELLAVMG 54
TLD R I V++PG V G
Sbjct: 116 TLDGRTIPVVFKDVIRPGMRRKVPG 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 26.2 bits (57), Expect = 2.7
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 46 PGELLAVMGPSGCGKTTLLNCLAGRVK 72
+++ V G G G TT ++
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 26.3 bits (58), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAG 69
RP L +G+ P L + GP G GKT L +A
Sbjct: 136 LRPEL--FTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 26.2 bits (57), Expect = 2.8
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVKL---DSGVIRLNKERLN 86
++ + G G + LA + + D +++L E+
Sbjct: 16 IITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA 56
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 26.3 bits (59), Expect = 3.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 49 LLAVMGPSGCGKTTL 63
L+A++GP+ GKT
Sbjct: 5 LVAIVGPTAVGKTKT 19
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 26.1 bits (58), Expect = 3.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLA 68
RP L +G+ P + L + GP G GKT L +A
Sbjct: 42 VRPEL--FTGLRAPAKGLLLFGPPGNGKTLLARAVA 75
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
+ ++ + L+ V GP+G GK+T +
Sbjct: 126 DKVLEL--CHRKMGLILVTGPTGSGKSTTI 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 26.2 bits (58), Expect = 3.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAGRVKLDSG 76
+ + + G +G GKTT L LA L+
Sbjct: 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 26.0 bits (58), Expect = 3.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 49 LLAVMGPSGCGKTTL 63
L+ ++GP+ GKT L
Sbjct: 9 LIVIVGPTASGKTEL 23
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 26.2 bits (58), Expect = 3.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 54 GPSGCGKTTLLNCLAG 69
GP GKT L +A
Sbjct: 71 GPPHSGKTALAAKIAE 86
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 26.1 bits (58), Expect = 3.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 51 AVMGPSGCGKTTLLNCLAGRVKL 73
A G S GK+T +N L + +L
Sbjct: 33 AFAGRSNAGKSTAINVLCNQKRL 55
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 26.1 bits (56), Expect = 3.4
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRK 92
+++ V P + G G GKT+L + + + VI ++ + ++
Sbjct: 20 LEELIQGKKAVESP-TAFLLGGQPGSGKTSLRSAIFE--ETQGNVIVIDNDTFKQQHPNF 76
Query: 93 ICYVLQQDIFFPELT 107
V + +
Sbjct: 77 DELVKLYEKDVVKHV 91
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 26.2 bits (58), Expect = 3.4
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 36 ILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
+ + G G+L+ + GCG NCL GR
Sbjct: 72 VEESYHGF-SQGDLVMPVNRRGCGIC--RNCLVGR 103
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 25.8 bits (56), Expect = 3.4
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 41 SGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
V G + + G SG GK+ L R
Sbjct: 28 VLVDIYGLGVLITGDSGVGKSETALELVQR 57
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 26.0 bits (58), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
+ K VS P L+ V GP+G GK+T L
Sbjct: 113 EVFKRVSD--VPRGLVLVTGPTGSGKSTTL 140
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 25.6 bits (57), Expect = 3.5
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 30 TLDKRPILKDVSGVVKPGELLAVMG 54
TLD R + + +V P V
Sbjct: 116 TLDNRNLQIPIKEIVNPKTRKIVPN 140
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 25.8 bits (57), Expect = 3.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 50 LAVMGPSGCGKTTLLNCLA 68
L ++G +G GKTTLL L
Sbjct: 5 LMIVGNTGSGKTTLLQQLM 23
>2jlq_A Serine protease subunit NS3; ribonucleoprotein,
nucleotide-binding, viral nucleoprotein, endoplasmic
reticulum, helicase, hydrolase; 1.67A {Dengue virus 4}
PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A*
2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 26.0 bits (57), Expect = 3.6
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
P + + + L + G GKT +
Sbjct: 7 PDYEVDEDIFRKKRLTIMDLHPGAGKTKRI 36
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 25.6 bits (57), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 51 AVMGPSGCGKTTLLNCLAGRVKL 73
A+ G S GK++ +N L R L
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNL 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 26.1 bits (58), Expect = 3.7
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 42 GVVKP-GELLAVMGPSGCGKTTL 63
G+ G L GP GCGKT L
Sbjct: 45 GMTPSKGVLFY--GPPGCGKTLL 65
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 25.9 bits (58), Expect = 3.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 49 LLAVMGPSGCGKTTL 63
+ +MGP+ GKT L
Sbjct: 12 AIFLMGPTASGKTAL 26
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 26.1 bits (57), Expect = 3.7
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 52 VMGPSGCGKTTLLNCLAGRVKLD 74
+MG SG GK+++ + +
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAF 30
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 25.9 bits (58), Expect = 3.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 49 LLAVMGPSGCGKTTL 63
+ +MGP+ GKT L
Sbjct: 7 AIFLMGPTAAGKTDL 21
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 25.7 bits (57), Expect = 3.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 44 VKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVI 78
+K G L+A G G GK++ L ++L V
Sbjct: 1 MKKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVY 35
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 25.8 bits (56), Expect = 3.8
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 49 LLAVMGPSGCGKTTLLN 65
++ +MG CGK+++
Sbjct: 1 MVLLMGVRRCGKSSICK 17
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug
gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 25.9 bits (56), Expect = 3.9
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 54 GPSGCGKTTLLNCLAGRVKLDS 75
GP G GKTT L D
Sbjct: 11 GPHGMGKTTTTQLLVALGSRDD 32
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.1 bits (56), Expect = 3.9
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 18 RPLELVFSG---LSVTLDKRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
P+ L+ + L + IL ++ + ++A++G GK+ L+N LAG+
Sbjct: 9 GPMCLIENTNGRLMANPEALKILSAITQPMV---VVAIVGLYRTGKSYLMNKLAGK 61
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 25.9 bits (56), Expect = 4.1
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGR 70
P L+D KP ++ V G GKT+ + L +
Sbjct: 55 PALEDADFDGKP--MVLVAGQYSTGKTSFIQYLLEQ 88
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 25.9 bits (57), Expect = 4.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLA 68
G ++ + G G GKT L + L+
Sbjct: 102 GGIETRTMTEFFGEFGSGKTQLCHQLS 128
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 25.9 bits (57), Expect = 4.2
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 35 PILKDVSGVVKPGELLAVMGPSGCGKTTLL 64
+ + +++ ++ + G GKT +
Sbjct: 9 QMGRGSPNMLRKRQMTVLDLHPGSGKTRKI 38
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A
{Homo sapiens} PDB: 2xsz_A*
Length = 456
Score = 25.7 bits (56), Expect = 4.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 45 KPGELLAVMGPSGCGKTTLLNCLAG 69
G + + GP G GKT L +A
Sbjct: 61 MAGRAVLLAGPPGTGKTALALAIAQ 85
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 25.6 bits (57), Expect = 4.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 53 MGPSGCGKTTLLNCLA 68
+GP+G GKT L LA
Sbjct: 57 IGPTGSGKTLLAETLA 72
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 25.7 bits (57), Expect = 4.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 53 MGPSGCGKTTLLNCLA 68
+GP+G GKT + LA
Sbjct: 78 IGPTGSGKTLMAQTLA 93
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase;
2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Length = 466
Score = 25.9 bits (56), Expect = 4.6
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 55 PSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKIC 94
PSGC T++ N + + + + ++ K + K
Sbjct: 286 PSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKLKILAY 325
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 25.7 bits (57), Expect = 4.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 51 AVMGPSGCGKTTLLNCLAGRVKL 73
A G S GK++ LN L + L
Sbjct: 30 AFAGRSNAGKSSALNTLTNQKSL 52
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 25.4 bits (56), Expect = 4.7
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 22/80 (27%)
Query: 11 EKYPLSHRPLELVFSGLSVTLDK----RPILKDVSGVVKPGEL--LAVMGPSGCGKTTLL 64
EKY RP L + + + + K G + + + G G GKTT +
Sbjct: 13 EKY----RP---------QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSV 59
Query: 65 NCLAGRV---KLDSGVIRLN 81
+CLA + GV+ LN
Sbjct: 60 HCLAHELLGRSYADGVLELN 79
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity
clamp, clamp loader, AAA+ ATPase, transferase; HET:
DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20
PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 25.6 bits (57), Expect = 5.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 7/23 (30%)
Query: 54 GPSGCGKTTL-------LNCLAG 69
G G GKT++ LNC G
Sbjct: 45 GTRGVGKTSIARLLAKGLNCETG 67
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 25.5 bits (55), Expect = 5.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 49 LLAVMGPSGCGKTTLLNCLAGRVK 72
+ V G G GK+T+L + +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILD 26
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 25.6 bits (56), Expect = 5.2
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKERLNKRWKRKICYVLQQDI 101
G ++ + G GKT L + L +L KI ++ ++
Sbjct: 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGG---------KIIFIDTENT 167
Query: 102 FFPELTLRQTLEVSIADEDE 121
F P+ LR + D D
Sbjct: 168 FRPDR-LRDIADRFNVDHDA 186
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 25.3 bits (56), Expect = 5.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 45 KPGELLAVMGPSGCGKTTL 63
+ ++ + G G GKTTL
Sbjct: 31 EKAIMVYLNGDLGAGKTTL 49
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 25.2 bits (56), Expect = 5.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 50 LAVMGPSGCGKTTLL 64
LA++G G GK+ L
Sbjct: 24 LAILGRRGAGKSALT 38
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 25.3 bits (56), Expect = 5.8
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 30 TLDKRPILKDVSGVVKPGELLAVMG 54
T+D R + V+P + G
Sbjct: 110 TIDGRTLPLSRVQPVQPSQTSTYPG 134
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 25.3 bits (55), Expect = 6.0
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 33 KRPILKDVSGVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
K P L +G P + + GP G GK+ L +A
Sbjct: 155 KFPHL--FTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN 192
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 25.5 bits (55), Expect = 6.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 52 VMGPSGCGKTTLLNCLAGR 70
++G S GKT+L L
Sbjct: 143 IVGGSQTGKTSLSRTLCSY 161
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 25.2 bits (55), Expect = 6.2
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 44 VKPGELLAVMGPSGCGKTTLLNCLAGR 70
+K +L + G G GK+ + +
Sbjct: 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent
pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP:
d.156.1.1
Length = 288
Score = 25.3 bits (55), Expect = 6.4
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 58 CGKTTLLNCL 67
CG T LL +
Sbjct: 15 CGTTKLLLAI 24
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 6.4
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 15/38 (39%)
Query: 82 KERLNKRWKRKICYVLQQDI-FF-----PELTLRQTLE 113
K+ L K LQ + + P L ++ T+E
Sbjct: 19 KQALKK---------LQASLKLYADDSAPALAIKATME 47
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 24.9 bits (55), Expect = 6.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 42 GVVKPGELLAVMGPSGCGKTTLLNCLAGRVK 72
G + G+ + G G GKTT L R++
Sbjct: 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 25.0 bits (55), Expect = 6.9
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 36 ILKDVSGVVKPGEL--LAVMGPS-GCGKTTLLNCLAGRVKLDSGVIRLN--KERLN 86
+ + G++ + + PS G GKTT+ L +++ ++ +N +++
Sbjct: 34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCH--DVNADMMFVNGSDCKID 87
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 25.2 bits (56), Expect = 7.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 59 GKTTLLNCLAGR 70
GK+TLLN L
Sbjct: 255 GKSTLLNRLLNE 266
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 25.2 bits (56), Expect = 7.0
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 59 GKTTLLNCLAGR 70
GK++LLN +
Sbjct: 236 GKSSLLNAWSQS 247
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 25.2 bits (55), Expect = 7.1
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 41 SGVVKPGELLAVMGPSGCGKTTLL 64
S ++K G + G GKT
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRF 25
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 25.0 bits (54), Expect = 7.3
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 48 ELLAVMGPSGCGKTTLLNCLAGRVKLDS 75
E AV+ G + + V ++
Sbjct: 120 ECTAVVARGGTANAIRIAAVDNPVNVNK 147
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 25.2 bits (56), Expect = 7.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 59 GKTTLLNCLAGR 70
GK+TLLN L G+
Sbjct: 245 GKSTLLNTLLGQ 256
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding,
nucleotidyltransferase, covalent protein-RNA linkage,
RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A
2uut_A
Length = 515
Score = 25.1 bits (54), Expect = 7.5
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 54 GPSGCGKTTLLNCLAGRVKLDSGVIRLNKER 84
PSG T+++N + + + + +++ +
Sbjct: 298 LPSGMPFTSVVNSINHMIYVAAAILQAYESH 328
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 24.9 bits (55), Expect = 7.5
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 7/23 (30%)
Query: 54 GPSGCGKTTL-------LNCLAG 69
G G GKT++ LNC G
Sbjct: 52 GTRGVGKTSIARLLAKGLNCETG 74
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 24.8 bits (55), Expect = 7.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 59 GKTTLLNCLAGR 70
GK++LLN LAGR
Sbjct: 16 GKSSLLNALAGR 27
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 24.9 bits (55), Expect = 7.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 46 PGELLAVMGPSGCGK 60
+ A++GP+G GK
Sbjct: 23 SDRVTAIVGPNGSGK 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 24.8 bits (55), Expect = 7.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 54 GPSGCGKTTLLNCLA 68
GP+G GKTTL N ++
Sbjct: 62 GPAGLGKTTLANIIS 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 24.8 bits (55), Expect = 7.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 54 GPSGCGKTTLLNCLA 68
GP G GKTTL + +A
Sbjct: 58 GPPGLGKTTLAHIIA 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 25.2 bits (55), Expect = 7.8
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 51 AVMGPSGCGKTTLLN--CLA--GRVKLDSGVIRLNKERLNKRWKRKICYV 96
V GP+G GK++L A G + + +N+ +
Sbjct: 27 VVEGPNGAGKSSLFEAISFALFGNG---IRYPN-SYDYVNRNAVDGTARL 72
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 24.9 bits (54), Expect = 7.8
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 27 LSVTLDKRPILKDVSGVVKPGELLAVMGPSG-CGKTTL 63
L V D + +SG ++ P G G +T+
Sbjct: 123 LGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTV 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 24.8 bits (55), Expect = 8.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 54 GPSGCGKTTLLNCLA 68
GP G GKTTL + +A
Sbjct: 45 GPPGLGKTTLAHVIA 59
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 24.9 bits (54), Expect = 8.1
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNK 82
+ + GP+ GKT + +A V V N+
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNE 139
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein,
GTP binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 24.8 bits (55), Expect = 8.4
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 57 GCGKTTLLN 65
G GKTTLL
Sbjct: 14 GAGKTTLLR 22
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 24.8 bits (54), Expect = 8.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 52 VMGPSGCGKTTLLNCLA 68
V+G GKT LL A
Sbjct: 23 VVGDGAVGKTCLLMSYA 39
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A
{Saccharomyces cerevisiae} PDB: 3ns5_A
Length = 100
Score = 24.3 bits (53), Expect = 8.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1 VVSNIPSLPPEKYPLSHRPLELVFS 25
VV+ P +P K P+ + L +FS
Sbjct: 10 VVNGAPVIPSAKVPVLKKALTSLFS 34
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 25.0 bits (54), Expect = 8.9
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 50 LAVMGPSGCGKTT----LLNCLAGRV 71
GP GKTT LL G+
Sbjct: 172 WLFKGPIDSGKTTLAAALLELCGGKA 197
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 24.7 bits (54), Expect = 9.2
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 50 LAVMGPSGCGKTTLLNCLA 68
V+G GKT LL
Sbjct: 33 CVVVGDGAVGKTCLLISYT 51
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 24.7 bits (54), Expect = 9.5
Identities = 5/23 (21%), Positives = 5/23 (21%), Gaps = 7/23 (30%)
Query: 54 GPSGCGKTTL-------LNCLAG 69
G G L L C
Sbjct: 31 ALPGMGDDALIYALSRYLLCQQP 53
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 24.8 bits (53), Expect = 9.7
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 50 LAVMGPSGCGKTTLLNCLAGRVKLDSGVIRLNKE 83
+ + G G GKTT + I L E
Sbjct: 15 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE 48
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 24.7 bits (53), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 54 GPSGCGKTTLLNCLAGRVK 72
GP G GKTTL++ + +K
Sbjct: 8 GPPGVGKTTLIHKASEVLK 26
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 24.7 bits (54), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 50 LAVMGPSGCGKTTLLNCLA 68
+ ++G GCGKT+LL A
Sbjct: 37 VVLVGDGGCGKTSLLMVFA 55
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 24.4 bits (54), Expect = 9.9
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 50 LAVMGPSGCGKTTLLN 65
+ ++G GK+ L++
Sbjct: 23 VGIVGNLSSGKSALVH 38
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 24.5 bits (54), Expect = 10.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 54 GPSGCGKTTLLNCLAGRVKLD 74
G GCG TT+ LA + +
Sbjct: 9 GARGCGMTTVGRELARALGYE 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.140 0.410
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,823,284
Number of extensions: 97007
Number of successful extensions: 750
Number of sequences better than 10.0: 1
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 344
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)