BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16346
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ + +LD+ H ++ ++ R LSGG+++R +A L+ +P+L+LLDEP S LD+
Sbjct: 121 VEEVAKILDI----HHVL-NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
S + +K + G T++V H P+ IF + D++ +L G+ G K D + N
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVG---KPEDLYDN 231
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 13 LANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS 70
L N +T++GD RG LSGG+K+R IA L+ NP ++LLDE TS LD+ + + +
Sbjct: 540 LPNGYNTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA 596
Query: 71 LKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113
L + A +G+T ++ H+ S+ D ++ NGQ GD
Sbjct: 597 LDKAA--KGRTTIIIAHRLST--IRNADLIISCKNGQVVEVGD 635
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
T +GD RG LSGG+K+R IA L+ NP ++LLDE TS LD+ + + +L R
Sbjct: 1208 ETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-- 1262
Query: 76 EKEGKTVVVTVHQ 88
+EG+T +V H+
Sbjct: 1263 AREGRTCIVIAHR 1275
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L NP ++L D+PT LDS +M LK+ E++GKTVVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ F ++++ L +G+
Sbjct: 206 INVARFG--ERIIYLKDGE 222
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L NP ++L DEPT LDS + LK+ E++GKTVVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ + ++++ L +G+
Sbjct: 206 IN--VARFGERIIYLKDGE 222
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ + +LD+ H ++ ++ R LSG +++R +A L+ +P+L+LLDEP S LD+
Sbjct: 121 VEEVAKILDI----HHVL-NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
S + +K + G T++V H P+ IF + D++ +L G+ G K D + N
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVG---KPEDLYDN 231
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L NP ++L D+PT LDS +M LK+ E++GKTVVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ F ++++ L +G+
Sbjct: 206 INVARFG--ERIIYLKDGE 222
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ + VL LA+ + D + LSGG+++R I L+ P++ LLDEP S LD+
Sbjct: 114 VNQVAEVLQLAH-----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
+ + R ++ G+T++ H + + DK+++L G+ A G K ++ +H
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG---KPLELYH 223
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 8 INVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL 67
+ LD N H ++ LSGG+++ IA + + L+LLDEPTS LD +
Sbjct: 110 MQALDYLNLTHLAKREFT--SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
Query: 68 MSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+S L A+ + TVV T HQP +Q+ + +K LLL N Q FG+T ++
Sbjct: 168 LSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLL-NKQNFKFGETRNIL 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ + VL LA+ + D + LSGG+++R I L+ P++ LLDEP S LD+
Sbjct: 114 VNQVAEVLQLAH-----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
+ + R ++ G+T++ H + + DK+++L G+ A G K ++ +H
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG---KPLELYH 223
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGEK+R IA ++ P +++LDEP GLD L+ ++++ + GKTV++ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHD 197
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ I H+ D++++L G+ + G
Sbjct: 198 IETVINHV-DRVVVLEKGKKVFDG 220
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGEK+R IA ++ P +++LDEP GLD L+ ++++ + GKTV++ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHD 199
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ I H+ D++++L G+ + G
Sbjct: 200 IETVINHV-DRVVVLEKGKKVFDG 222
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
+T++G+ +G LSGG+K+R IA LL NP ++LLDE TS LD+ Y + +L R
Sbjct: 474 NTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 530
Query: 76 EKEGKTVVVTVHQPSS 91
+G+TV+V H+ S+
Sbjct: 531 --DGRTVLVIAHRLST 544
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 11/103 (10%)
Query: 10 VLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL 67
++ L + T++G+ RG LSGG+K+R IA L+ NP ++LLDE TS LD+ + +
Sbjct: 509 IMKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV 565
Query: 68 MSSLKRYAEKEGKTVVVTVHQPSS----QIFHMFDKLLLLCNG 106
++L + +EG+T +V H+ S+ + FD +++ G
Sbjct: 566 QAALDK--AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 13 LANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK 72
L + +T +GD + LSGG+K+R IA L+ P ++LLDE TS LD+ + + +L
Sbjct: 1157 LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 73 RYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +EG+T +V H+ S+ D ++++ NG+ G
Sbjct: 1216 K--AREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHG 1251
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ + VL LA+ + D + LSGG+++R I L+ P++ LLD+P S LD+
Sbjct: 114 VNQVAEVLQLAH-----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAAL 168
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
+ + R ++ G+T++ H + + DK+++L G+ A G K ++ +H
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG---KPLELYH 223
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 11/103 (10%)
Query: 10 VLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL 67
++ L + T++G+ RG LSGG+K+R IA L+ NP ++LLDE TS LD+ + +
Sbjct: 509 IMKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV 565
Query: 68 MSSLKRYAEKEGKTVVVTVHQPSS----QIFHMFDKLLLLCNG 106
++L + +EG+T +V H+ S+ + FD +++ G
Sbjct: 566 QAALDK--AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 13 LANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK 72
L + +T +GD + LSGG+K+R IA L+ P ++LLDE TS LD+ + + +L
Sbjct: 1157 LPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 73 RYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +EG+T +V H+ S+ D ++++ NG+ G
Sbjct: 1216 K--AREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHG 1251
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 12 DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL 71
+L +TI+G+ GLSGG+++R IA L+ NP +++ DE TS LD + + +M ++
Sbjct: 124 ELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 72 KRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +G+TV++ H+ S+ D+++++ G+ G
Sbjct: 183 HKIC--KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 12 DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL 71
+L +TI+G+ GLSGG+++R IA L+ NP +++ DE TS LD + + +M ++
Sbjct: 130 ELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 72 KRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +G+TV++ H+ S+ D+++++ G+ G
Sbjct: 189 HKIC--KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQG 225
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
+T++G+ +G LSGG+K+R IA LL NP ++LLDE TS LD+ Y + +L R
Sbjct: 505 NTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 561
Query: 76 EKEGKTVVVTVHQPSS 91
+G+TV+V H S+
Sbjct: 562 --DGRTVLVIAHHLST 575
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+ +L +TI+G+ GLSGG+++R IA L+ NP +++ DE TS LD + + +M
Sbjct: 124 ISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
++ + +G+TV++ H+ S+ D+++++ G+ G
Sbjct: 183 NMHKIC--KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQG 221
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 12 DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL 71
+L +TI+G+ GLSGG+++R IA L+ NP +++ DE TS LD + + +M ++
Sbjct: 126 ELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 72 KRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +G+TV++ H+ S+ D+++++ G+ G
Sbjct: 185 HKIC--KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQG 221
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +IA L P ++L DEPTS LD ++ +++ AE EGKT+VV H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHE 212
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H+ ++ L G+ GD +V
Sbjct: 213 MGF-ARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R SGG+K+R +IA L+ P +++LD+ TS +D ++ LKRY K T ++T
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQ 536
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFG 112
P++ + DK+L+L G+ A FG
Sbjct: 537 KIPTAL---LADKILVLHEGKVAGFG 559
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L+ P ++LLDEP S LD+ + + LKR ++ G T V H
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
++ M D++ ++ G+ G ++V
Sbjct: 194 -QAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 12 DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL 71
+L +TI+G+ GLSGG+++R IA L+ NP +++ D+ TS LD + + +M ++
Sbjct: 130 ELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM 188
Query: 72 KRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +G+TV++ H+ S+ D+++++ G+ G
Sbjct: 189 HKIC--KGRTVIIIAHRLST--VKNADRIIVMEKGKIVEQG 225
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 12 DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL 71
+L +TI+G+ GLSGG+++R IA L+ NP +++ DE TS LD + + +M ++
Sbjct: 124 ELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 72 KRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +G+TV++ + S+ D+++++ G+ G
Sbjct: 183 HKIC--KGRTVIIIAARLST--VKNADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 12 DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL 71
+L +TI+G+ GLSGG+++R IA L+ NP +++ DE TS LD + + +M ++
Sbjct: 130 ELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 72 KRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +G+TV++ + S+ D+++++ G+ G
Sbjct: 189 HKIC--KGRTVIIIAARLST--VKNADRIIVMEKGKIVEQG 225
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+ +R IA L P +ML DEPTS LD ++S +K+ A EG T+VV H+
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA-NEGMTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+ +R IA L P +ML DEPTS LD ++S +K+ A EG T+VV H+
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA-NEGMTMVVVTHE 218
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 62/107 (57%), Gaps = 11/107 (10%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
M +++++ LD T+IG+ LSGG+++R IA LL + +++LDE TS LD
Sbjct: 460 MEFIENMPQGLD------TVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 61 SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
+ + ++ ++L ++ KTV+V H+ S+ D++L++ G+
Sbjct: 513 TESERAIQAALDEL--QKNKTVLVIAHRLST--IEQADEILVVDEGE 555
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 3 YVDHII-NVLDLA-------NCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLL 52
Y D + VLDLA N + + +RG +SGG+++R IA L NP +++L
Sbjct: 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163
Query: 53 DEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
DE T+ LDS + + +L +G+T +V H+ S+ + DK+ + GQ G
Sbjct: 164 DEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSG 219
Query: 113 DTNKVV 118
N++V
Sbjct: 220 KHNELV 225
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 26 KRGL--SGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83
+RGL SGGEK+R IA +L P ++LLDE TS LD+ ++ +SL + +T +
Sbjct: 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN--RTTI 243
Query: 84 VTVHQPSSQIFHMFDKLLLLCNG 106
V H+ S+ + D++L++ +G
Sbjct: 244 VVAHRLSTVV--NADQILVIKDG 264
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSG 58
M Y IN +D N T+IG+ G LSGG+++R IA LL + +++LDE TS
Sbjct: 456 MAYAMDFINKMD--NGLDTVIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 59 LDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
LD+ + ++ ++L ++ +T +V H+ S+ D+++++ +G G N ++
Sbjct: 511 LDTESERAIQAALDEL--QKNRTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLL 566
Query: 119 D 119
+
Sbjct: 567 E 567
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA---AYSLMSSLKRYAEKEGKTVVVT 85
LSGGE++R +A L+TNP ++LLDEP S LD A ++S L K+ K V+
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL----HKKNKLTVLH 183
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+ ++ M D++ ++ +G+ G ++
Sbjct: 184 ITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A ++ P ++L+DEP S LD+ ++ + +K+ +K T + H
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+ M D++ ++ GQ G +V
Sbjct: 203 -QVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A ++ P ++L+DEP S LD+ ++ + +K+ +K T + H
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+ M D++ ++ GQ G +V
Sbjct: 202 -QVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 9/111 (8%)
Query: 10 VLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL 67
+++L T +G+ RG LSGG+K+R +IA L NP +++LDE TS LD + +
Sbjct: 460 IMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 68 MSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+L ++ +T ++ H+ S+ I H DK++++ NG G +++
Sbjct: 517 QEALDVLSKD--RTTLIVAHRLST-ITHA-DKIVVIENGHIVETGTHRELI 563
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSG 58
M Y IN +D N TIIG+ G LSGG+++R IA LL + +++LDE TS
Sbjct: 456 MAYAMDFINKMD--NGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 59 LDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106
LD+ + ++ ++L ++ +T +V H+ S+ D+++++ +G
Sbjct: 511 LDTESERAIQAALDEL--QKNRTSLVIAHRLST--IEQADEIVVVEDG 554
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A L P ++L DEP + +D+ L + +++ ++ G T V H
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+ + D++L+L G FG +V
Sbjct: 206 -QEEALEVADRVLVLHEGNVEQFGTPEEV 233
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG+K+R IA L +NP ++L DE TS LD S++ LK + G T+
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQ 107
++ H+ + + D + ++ NG+
Sbjct: 195 LLITHEMDV-VKRICDCVAVISNGE 218
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R LSGG+++R + ++ P + L+DEP S LD+ + + LK+ + G T +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
H + M D++ ++ G G ++V D
Sbjct: 198 HD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A L+ P ++L DEP S LD++ + + +K ++ G T V H
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNI 124
++ M ++ + G+ +G ++V D N+
Sbjct: 194 -QAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG+K+R IA L +NP ++L D+ TS LD S++ LK + G T+
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQ 107
++ H+ + + D + ++ NG+
Sbjct: 218 LLITHE-XDVVKRICDCVAVISNGE 241
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+KKR IA L+ P +++LDEPT+GLD +M L ++ G T+++ H
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R +A L+ P L+LLDEP S +D LM L R+ ++E ++ V
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTH 185
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ + D++ ++ NG+ G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG+K+R IA L +NP ++L D+ TS LD S++ LK + G T+
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQ 107
++ H+ + + D + ++ NG+
Sbjct: 218 LLITHEMDV-VKRICDCVAVISNGE 241
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 39 IACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFD 98
IA L+ NP L +LDEPTSGLD A + LK+ A +EG T++V+ H ++ + D
Sbjct: 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSHN-MLEVEFLCD 214
Query: 99 KLLLLCNGQTAYFGDTNKVVDFFH 122
++ L+ NG G ++ + +
Sbjct: 215 RIALIHNGTIVETGTVEELKERYK 238
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
++ ++ L+L N I + LSGGE +R IA LL N DEP+S LD
Sbjct: 139 LEEVVKALELENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ +++R +E EGK+V+V H + + ++ + G+ +G
Sbjct: 194 RLNAARAIRRLSE-EGKSVLVVEHDLA--VLDYLSDIIHVVYGEPGVYG 239
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE +R IA LL + + LLDEP++ LD ++ +++ EK KT +V H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Query: 89 PSSQIFHMFDKLLLLCNGQTAY------FGDTNKVVDFFHNIGLTWNKS 131
I ++ D+L + Y G F +IG+T+ +
Sbjct: 462 -VLXIDYVSDRLXVFEGEPGKYGRALPPXGXREGXNRFLASIGITFRRD 509
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 19 TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
TI+G+ + LSGGE++R IA LL +P +++ DE TS LDS Y +++ ++
Sbjct: 147 TIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--RK 203
Query: 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWN 129
+T+++ H+ S+ + ++LL G+ G ++ WN
Sbjct: 204 NRTLIIIAHRLST--ISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
+T+ DH I L T++ D LS G+++ I L NP +++LDE TS +D
Sbjct: 467 LTHSDHFIK--HLPEGYETVLTDN-GEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 61 SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+ S+ +++ + EGKT ++ H+ ++ D +++L +G+ G ++++
Sbjct: 524 TKTEKSIQAAM--WKLMEGKTSIIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELI 577
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE +R IA LL + + LLDEP++ LD ++ +++ EK KT +V H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDT-------NKVVDFFHNIGLTWNKS 131
I ++ D+L++ G+ G + F ++G+T+ +
Sbjct: 518 -VLMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASVGITFRRD 565
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE +R IA LL DEP+S LD + ++R A EGK V+V H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-NEGKAVLVVEHD 273
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ + ++ + G+ +G
Sbjct: 274 LA--VLDYLSDVIHVVYGEPGVYG 295
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE +R IA LL + + LLDEP++ LD ++ +++ EK KT +V H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDT-------NKVVDFFHNIGLTWNKS 131
I ++ D+L++ G+ G + F ++G+T+ +
Sbjct: 532 -VLMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFLASVGITFRRD 579
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE +R IA LL DEP+S LD + ++R A EGK V+V H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-NEGKAVLVVEHD 287
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ + ++ + G+ +G
Sbjct: 288 LA--VLDYLSDVIHVVYGEPGVYG 309
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 6 HIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD---SH 62
I VL+L D + LSGG+K+R IA L + + LDEP S LD
Sbjct: 120 RIKKVLELVGLSGLAAADPLN--LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 63 AAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF-F 121
+ ++ SLK EGK +++ H+ + D +L + NG + G + V+ F
Sbjct: 178 EIFQVLESLK----NEGKGIILVTHEL--EYLDDMDFILHISNGTIDFCGSWEEFVEREF 231
Query: 122 HNIGLTWNKSKAAKKCERRSSW 143
++ + + K K KKC + + W
Sbjct: 232 DDVEIPF-KWKLWKKCGKINLW 252
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 21 IGDYMKRG---LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+GD + R LSGGE++R IA L P L+ DEPT LDS +M + E
Sbjct: 130 LGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 78 EGKTVVVTVHQPSSQIFH 95
V+VT + +++ H
Sbjct: 190 GTSIVMVTHERELAELTH 207
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
RGLSGG+K + +A P L++LDEPT+ LD + +L +LK + EG +++T
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIIT 955
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDS 61
LSGG K + +A +L N ++LLDEPT+ LD+
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 6 HIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAY 65
+ L+L + + + Y+ G SGGEKKR I L+ P +LDE SGLD A
Sbjct: 121 KVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180
Query: 66 SLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMF--DKLLLLCNGQTAYFGDTNKVVDFFHN 123
+ + +V+T +Q +I + DK+ ++ +G+ G ++
Sbjct: 181 VVARGVNAMRGPNFGALVITHYQ---RILNYIQPDKVHVMMDGRVVATGGPELALE-LEA 236
Query: 124 IGLTWNKSKAAKKC 137
G W K K +
Sbjct: 237 KGYEWLKEKVKEGA 250
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 20 IIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
I+ RGLSGG+K + +A P L++LDEPT+ LD + +L +LK + EG
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EG 949
Query: 80 KTVVVT 85
+++T
Sbjct: 950 GVIIIT 955
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDS 61
LSGG K + +A +L N ++LLDEPT+ LD+
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 20 IIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
I+ RGLSGG+K + +A P L++LDEPT+ LD + +L +LK + EG
Sbjct: 887 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EG 943
Query: 80 KTVVVT 85
+++T
Sbjct: 944 GVIIIT 949
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDS 61
LSGG K + +A +L N ++LLDEPT+ LD+
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R LSGG+++R + ++ P + L DEP S LD+ + LK+ + G T +
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVT 200
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H + D++ + G+ G ++V
Sbjct: 201 HD-QVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+ K I L+TNP ++++DEP +G+ A+ + + + K G T ++ H+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHR 212
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ + D L ++ NGQ
Sbjct: 213 -LDIVLNYIDHLYVMFNGQ 230
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+ K I L+TNP ++++DEP +G+ A+ + + + K G T ++ H+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHR 212
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ + D L ++ NGQ
Sbjct: 213 -LDIVLNYIDHLYVMFNGQ 230
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS GEK+R IA L P +++LDEP +GLD A SL+S L ++ + V
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+I F K+LLL +GQ+ G ++
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 9 NVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLT------NPALMLLDEPTSGLDSH 62
V+ +C DY R LSGGE++R +A L P + LDEPTS LD +
Sbjct: 124 QVMAQTDCLALAQRDY--RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181
Query: 63 AAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ L++ +E V +H + + D+++LL G+ G +V++
Sbjct: 182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEEVLN 237
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGG K+R IA LL +P +++LDEPTS LD
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 18 HTIIGDYMKRG-----LSGGEKKRANIACELL---TNPALMLLDEPTSGLDSHAAYSLMS 69
H + Y+K G LSGGE +R +A EL T L +LDEPT GL L+
Sbjct: 790 HDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE 849
Query: 70 SLKRYAEKEGKTVVVTVHQ 88
L R ++ G TV+V H
Sbjct: 850 VLHRLVDR-GNTVIVIEHN 867
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 29 LSGGEKKRANIACELLTN--PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGGE +R +A ++ + + +LDEPT GL L+ +LK+ + G TV+V
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVE 523
Query: 87 HQ 88
H
Sbjct: 524 HD 525
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+ K I L+TNP ++++D+P +G+ A+ + + + K G T ++ H+
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHR 212
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ + D L ++ NGQ
Sbjct: 213 -LDIVLNYIDHLYVMFNGQ 230
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 24 YMKRG-----LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
YMK G LSGGE +R +A EL L +LDEPT+GL L+ L R
Sbjct: 836 YMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV 895
Query: 76 EKEGKTVVVTVH 87
+ G TV+V H
Sbjct: 896 DN-GDTVLVIEH 906
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 29 LSGGEKKRANIACELLTN--PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGGE +R +A ++ + L +LDEP+ GL L+++LK + G T++V
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVE 563
Query: 87 HQPSS 91
H +
Sbjct: 564 HDEDT 568
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 24 YMKRG-----LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
YMK G LSGGE +R +A EL L +LDEPT+GL L+ L R
Sbjct: 534 YMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV 593
Query: 76 EKEGKTVVVTVHQ 88
+ G TV+V H
Sbjct: 594 DN-GDTVLVIEHN 605
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 29 LSGGEKKRANIACELLTN--PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGGE +R +A ++ + L +LDEP+ GL L+++LK + G T++V
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVE 261
Query: 87 HQPSSQI 93
H + +
Sbjct: 262 HDEDTML 268
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
G SGGEKKR +I + P L +LDE SGLD A + + + + ++VT +
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 204
Query: 88 Q 88
Q
Sbjct: 205 Q 205
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
G SGGEKKR +I + P L +LDE SGLD A + + + + ++VT +
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223
Query: 88 Q 88
Q
Sbjct: 224 Q 224
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 29 LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE +R +A EL L +LDEPT+GL L+ L R + G TV+V
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVI 904
Query: 86 VH 87
H
Sbjct: 905 EH 906
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 29 LSGGEKKRANIACELLTN--PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGGE +R +A ++ + L +LDEP+ GL L+++LK + G T++V
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDL-GNTLIVVE 563
Query: 87 HQPSSQI 93
H + +
Sbjct: 564 HDEDTXL 570
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKRYAEKEGKTVVVTVH 87
LSGG+K+R ++A + +N + L D+P S +D+H + + + + KT ++ H
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187
Query: 88 QPSSQIFHMFDKLLLLCNGQTAYFG 112
S D ++++ G+ + G
Sbjct: 188 --SMSYLPQVDVIIVMSGGKISEMG 210
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 29 LSGGEKKRANIACELL---TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE +R +A EL T + +LDEPT+GL L++ + +K G TV+V
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIVI 922
Query: 86 VHQ 88
H
Sbjct: 923 EHN 925
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 29 LSGGEKKRANIACELLTN--PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGGE +R +A ++ + L +LDEP+ GL L+ +L R + G T++V
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL-GNTLIVVE 580
Query: 87 HQPSS 91
H +
Sbjct: 581 HDEDT 585
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++ +A L+ P L++LD+ TS LD+ + L E +TV++ HQ
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE ++ IA L L +LD+P+S LD Y + ++KR +E K V +
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT-RERKAVTFIIDH 444
Query: 89 PSSQIFHMFDKLLL 102
S ++ D++++
Sbjct: 445 DLSIHDYIADRIIV 458
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V ++N+ +L N I LSGG +R +A LL + + D+P+S LD
Sbjct: 122 VKELLNMTNLWNKDANI--------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE 173
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116
++ +++ + K V+V H + L+ + G+++ +G +K
Sbjct: 174 RMNMAKAIRELL--KNKYVIVVDHDLI--VLDYLTDLIHIIYGESSVYGRVSK 222
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG+++ +A L+ P +++LD+ TS LD+++ + L E+ ++V
Sbjct: 149 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSV 208
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
++ S + D +L L G G ++++
Sbjct: 209 LLITQHLS--LVEQADHILFLEGGAIREGGTHQQLME 243
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 29 LSGGEKKRANIACELL-----TNPA--LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81
LSGGE +R +A +L NPA L+LLDEP + LD A S + + ++G
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDV-AQQSALDKILSALSQQGLA 185
Query: 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+V + H + + H + LL G+ G +V+
Sbjct: 186 IVXSSHDLNHTLRHAH-RAWLLKGGKXLASGRREEVL 221
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++ +A L+ P L++LD TS LD+ + L E +TV++ Q
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 29 LSGGEKKRANIACELLTNP---ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE +R +A EL + + +LDEPT+GL L L + + G TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAV 789
Query: 86 VHQ 88
H+
Sbjct: 790 EHK 792
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 29 LSGGEKKRANIACELLTN--PALMLLDEPTSGL---DSHAAYSLMSSLKR 73
LS GE +R +A +L +N + +LDEP++GL D+ A S + +LKR
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR 429
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 29 LSGGEKKRANIACELLTN------PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE+ +A L + +L++LDEPT LD L++ ++RY +K + +
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 83 VVT 85
+V+
Sbjct: 118 LVS 120
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE +R I L + L+DEP++ LDS ++R+ KT + H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 29 LSGGEKKRANIACELL-----TNPA--LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81
LSGGE +R +A +L NPA L+LLDEP + LD A S + + ++G
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDV-AQQSALDKILSALCQQGLA 185
Query: 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+V + H + + H + LL G+ G +V+
Sbjct: 186 IVXSSHDLNHTLRHAH-RAWLLKGGKXLASGRREEVL 221
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++RA +A L +P L+LLDEP S LD + + GK+ V H
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ D++ ++ G+
Sbjct: 199 -REEALQYADRIAVMKQGR 216
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++ I L + P L+ DEP+ GL + +++ +EG T+++ V Q
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKI-NQEGTTILL-VEQ 197
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ + +L GQ G ++++D
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 32.0 bits (71), Expect = 0.84, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 29 LSGGEKKRANIACELLTN------PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
L GGE+ +A L + +L++LDEPT LD L++ ++RY +K + +
Sbjct: 54 LRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 113
Query: 83 VVT 85
+V+
Sbjct: 114 LVS 116
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 29 LSGGEKK------RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE+ R ++ L +L++LDEPT LD L++ ++RY +K + +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 83 VVT 85
+V+
Sbjct: 309 LVS 311
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 27 RGLSGGEKKRANIACELLTNPALM--------LLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
RGLSGGE RA I+ L + A + +DE S LD+ + S LK E+
Sbjct: 278 RGLSGGE--RALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL-ERL 334
Query: 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNG 106
K +V H + FD+ L + G
Sbjct: 335 NKVIVFITH--DREFSEAFDRKLRITGG 360
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 29 LSGGEKK------RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE+ R ++ L +L++LDEPT LD L++ ++RY +K + +
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 83 VVT 85
+V+
Sbjct: 329 LVS 331
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 9 NVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM 68
++ A +T++G+ LSGG++ R ++A + + L LLD P LD +
Sbjct: 142 DITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
Query: 69 SS--LKRYAEKEGKTVVVTVHQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S K A K ++VT S++ H+ DK+L+L G + ++G
Sbjct: 201 ESCVCKLMANK--TRILVT-----SKMEHLRKADKILILHQGSSYFYG 241
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 9 NVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM 68
++ A +T++G+ LSGG++ R ++A + + L LLD P LD +
Sbjct: 142 DITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
Query: 69 SS--LKRYAEKEGKTVVVTVHQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S K A K ++VT S++ H+ DK+L+L G + ++G
Sbjct: 201 ESCVCKLMANK--TRILVT-----SKMEHLRKADKILILHQGSSYFYG 241
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 27 RGLSGGEKKRANIACELLTNPALM--------LLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
RGLSGGE RA I+ L + A + +DE S LD+ + S LK E+
Sbjct: 278 RGLSGGE--RALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL-ERL 334
Query: 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNG 106
K +V H + FD+ L + G
Sbjct: 335 NKVIVFITH--DREFSEAFDRKLRITGG 360
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 9 NVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM 68
++ A +T++G+ LSGG++ R ++A + + L LLD P LD +
Sbjct: 142 DITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
Query: 69 SS--LKRYAEKEGKTVVVTVHQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S K A K ++VT S++ H+ DK+L+L G + ++G
Sbjct: 201 ESCVCKLMANK--TRILVT-----SKMEHLRKADKILILHQGSSYFYG 241
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 9 NVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM 68
++ A +T++G+ LSGG++ R ++A + + L LLD P LD +
Sbjct: 142 DITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
Query: 69 SS--LKRYAEKEGKTVVVTVHQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S K A K ++VT S++ H+ DK+L+L G + ++G
Sbjct: 201 ESCVCKLMANK--TRILVT-----SKMEHLRKADKILILHQGSSYFYG 241
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 29 LSGGEKK------RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE+ R ++ L +L++LDEPT LD L++ ++RY +K + +
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 83 VVT 85
+V+
Sbjct: 144 LVS 146
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 9 NVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM 68
++ A +T++G+ LSGG++ R ++A + + L LLD P LD +
Sbjct: 141 DITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 199
Query: 69 SS--LKRYAEKEGKTVVVTVHQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S K A K ++VT S++ H+ DK+L+L G + ++G
Sbjct: 200 ESCVCKLMANK--TRILVT-----SKMEHLRKADKILILHQGSSYFYG 240
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 29 LSGGEKK------RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE+ R ++ L +L++LDEPT LD L++ ++RY +K + +
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 83 VVT 85
+V+
Sbjct: 149 LVS 151
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS--LKRYAEKEGKTVVVTV 86
LSGG++ R ++A + + L LLD P LD + S K A K ++VT
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRILVT- 187
Query: 87 HQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S++ H+ DK+L+L G + ++G
Sbjct: 188 ----SKMEHLKKADKILILHEGSSYFYG 211
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS--LKRYAEKEGKTVVVTV 86
LSGG++ R ++A + + L LLD P LD + S K A K ++VT
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRILVT- 199
Query: 87 HQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S++ H+ DK+L+L G + ++G
Sbjct: 200 ----SKMEHLKKADKILILHEGSSYFYG 223
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS--LKRYAEKEGKTVVVTV 86
LSGG++ R ++A + + L LLD P LD + S K A K ++VT
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRILVT- 186
Query: 87 HQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S++ H+ DK+L+L G + ++G
Sbjct: 187 ----SKMEHLKKADKILILHEGSSYFYG 210
>pdb|3IKL|A Chain A, Crystal Structure Of Pol Gb Delta-I4.
pdb|3IKL|B Chain B, Crystal Structure Of Pol Gb Delta-I4
Length = 459
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 228 NWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFA 271
N V++IG A L+WF PRT D W+ +W FA
Sbjct: 194 NGVKSIGEKTEASLVWFTPPRTSNQWLDF--WLRHRLQWWRKFA 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS--LKRYAEKEGKTVVVTV 86
LSGG++ R ++A + + L LLD P LD + S K A K ++VT
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRILVT- 216
Query: 87 HQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S++ H+ DK+L+L G + ++G
Sbjct: 217 ----SKMEHLKKADKILILHEGSSYFYG 240
>pdb|2G4C|A Chain A, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|B Chain B, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|C Chain C, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
pdb|2G4C|D Chain D, Crystal Structure Of Human Dna Polymerase Gamma Accessory
Subunit
Length = 474
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 228 NWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFA 271
N V++IG A L+WF PRT D W+ +W FA
Sbjct: 215 NGVKSIGEKTEASLVWFTPPRTSNQWLDF--WLRHRLQWWRKFA 256
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS--LKRYAEKEGKTVVVTV 86
LSGG++ R ++A + + L LLD P LD + S K A K ++VT
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRILVT- 217
Query: 87 HQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S++ H+ DK+L+L G + ++G
Sbjct: 218 ----SKMEHLKKADKILILHEGSSYFYG 241
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS--LKRYAEKEGKTVVVTV 86
LSGG++ R ++A + + L LLD P LD + S K A K ++VT
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRILVT- 216
Query: 87 HQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S++ H+ DK+L+L G + ++G
Sbjct: 217 ----SKMEHLKKADKILILHEGSSYFYG 240
>pdb|3IKM|B Chain B, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|C Chain C, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|E Chain E, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|F Chain F, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 427
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 228 NWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFA 271
N V++IG A L+WF PRT D W+ +W FA
Sbjct: 168 NGVKSIGEKTEASLVWFTPPRTSNQWLDF--WLRHRLQWWRKFA 209
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
L+ G+++ +A L+ P L++LD TS LD+ + L E +TV++ Q
Sbjct: 157 LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216
Query: 89 PS 90
S
Sbjct: 217 LS 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,646,164
Number of Sequences: 62578
Number of extensions: 523966
Number of successful extensions: 1341
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 129
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)