Query psy16346
Match_columns 494
No_of_seqs 241 out of 2500
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:01:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061|consensus 100.0 8.8E-81 1.9E-85 676.2 43.0 462 2-493 144-610 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 3.9E-80 8.4E-85 676.9 48.4 469 2-493 139-615 (617)
3 PLN03211 ABC transporter G-25; 100.0 1.3E-79 2.9E-84 673.3 49.5 466 2-492 180-659 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 3E-77 6.6E-82 699.7 47.8 473 4-492 185-695 (1394)
5 PLN03140 ABC transporter G fam 100.0 1.3E-75 2.8E-80 684.0 44.1 461 4-491 312-789 (1470)
6 PLN03140 ABC transporter G fam 100.0 6.6E-74 1.4E-78 669.7 49.6 459 3-494 994-1469(1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 3.1E-73 6.8E-78 665.9 46.4 466 2-494 876-1394(1394)
8 KOG0065|consensus 100.0 9.6E-72 2.1E-76 616.6 31.9 467 3-492 235-731 (1391)
9 KOG0065|consensus 100.0 2.8E-69 6.1E-74 597.0 23.6 410 2-438 904-1325(1391)
10 COG1135 AbcC ABC-type metal io 99.9 4.2E-26 9.2E-31 220.8 10.9 111 2-118 120-230 (339)
11 COG1126 GlnQ ABC-type polar am 99.9 1.4E-25 3.1E-30 207.2 11.9 110 2-118 115-224 (240)
12 COG1120 FepC ABC-type cobalami 99.9 8.5E-25 1.8E-29 211.1 11.4 111 3-119 118-228 (258)
13 COG1131 CcmA ABC-type multidru 99.9 2.3E-24 4.9E-29 215.6 13.8 115 2-122 115-229 (293)
14 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.9E-24 4.2E-29 207.6 11.5 110 2-119 118-227 (254)
15 COG4555 NatA ABC-type Na+ tran 99.9 1.9E-24 4.2E-29 197.1 10.2 111 2-119 112-222 (245)
16 COG1127 Ttg2A ABC-type transpo 99.9 3.8E-24 8.2E-29 200.7 12.1 110 4-119 125-235 (263)
17 COG1125 OpuBA ABC-type proline 99.9 7.1E-24 1.5E-28 199.8 11.8 112 2-119 112-225 (309)
18 COG1122 CbiO ABC-type cobalt t 99.9 5.3E-24 1.2E-28 205.0 10.9 113 2-120 117-229 (235)
19 COG1124 DppF ABC-type dipeptid 99.9 1.6E-23 3.5E-28 197.2 10.3 113 2-120 119-232 (252)
20 COG3840 ThiQ ABC-type thiamine 99.9 3.3E-23 7.3E-28 186.1 11.0 111 2-118 108-218 (231)
21 COG1136 SalX ABC-type antimicr 99.9 3.9E-23 8.6E-28 195.8 11.8 101 2-108 120-220 (226)
22 TIGR02314 ABC_MetN D-methionin 99.9 5.1E-23 1.1E-27 209.7 13.4 111 2-118 119-229 (343)
23 COG0444 DppD ABC-type dipeptid 99.9 3.7E-23 8.1E-28 202.8 11.7 114 2-118 129-242 (316)
24 COG1137 YhbG ABC-type (unclass 99.9 4.9E-23 1.1E-27 187.7 10.5 110 3-119 119-228 (243)
25 COG3638 ABC-type phosphate/pho 99.9 4E-23 8.6E-28 193.3 9.8 112 3-120 127-238 (258)
26 COG1118 CysA ABC-type sulfate/ 99.9 8.8E-23 1.9E-27 197.4 11.6 113 2-120 116-228 (345)
27 COG1123 ATPase components of v 99.9 1E-22 2.2E-27 213.3 13.0 115 2-120 131-245 (539)
28 PRK13537 nodulation ABC transp 99.9 1.5E-22 3.3E-27 203.9 13.7 111 2-119 117-227 (306)
29 PRK11650 ugpC glycerol-3-phosp 99.9 1.9E-22 4.1E-27 206.9 13.7 112 2-119 113-224 (356)
30 cd03261 ABC_Org_Solvent_Resist 99.9 2E-22 4.4E-27 195.6 13.0 110 3-118 116-225 (235)
31 TIGR03258 PhnT 2-aminoethylpho 99.9 2.1E-22 4.6E-27 206.7 13.4 112 2-119 116-228 (362)
32 TIGR03265 PhnT2 putative 2-ami 99.9 2.1E-22 4.5E-27 206.4 13.3 112 2-119 113-224 (353)
33 TIGR01188 drrA daunorubicin re 99.9 2.9E-22 6.2E-27 201.8 13.7 111 3-120 104-214 (302)
34 COG0411 LivG ABC-type branched 99.9 2.5E-22 5.4E-27 189.4 11.9 113 2-120 128-240 (250)
35 PRK11432 fbpC ferric transport 99.9 3.1E-22 6.6E-27 204.9 13.4 111 2-118 115-225 (351)
36 cd03256 ABC_PhnC_transporter A 99.9 4.5E-22 9.7E-27 193.8 13.9 110 3-118 124-233 (241)
37 PRK10851 sulfate/thiosulfate t 99.9 3.7E-22 7.9E-27 204.6 13.6 112 2-119 115-226 (353)
38 PRK13637 cbiO cobalt transport 99.9 7.4E-22 1.6E-26 197.3 14.4 112 2-119 121-234 (287)
39 PRK13634 cbiO cobalt transport 99.9 5.9E-22 1.3E-26 198.4 13.6 111 2-118 123-234 (290)
40 PRK13536 nodulation factor exp 99.9 6.4E-22 1.4E-26 201.8 13.8 111 3-120 152-262 (340)
41 PRK11022 dppD dipeptide transp 99.9 5.9E-22 1.3E-26 201.2 13.5 115 2-119 129-243 (326)
42 PRK11153 metN DL-methionine tr 99.9 5.8E-22 1.3E-26 202.8 13.5 111 2-118 119-229 (343)
43 PRK09452 potA putrescine/sperm 99.9 5.6E-22 1.2E-26 204.4 13.4 112 2-119 123-234 (375)
44 PRK15093 antimicrobial peptide 99.9 7E-22 1.5E-26 201.2 14.0 113 3-118 135-247 (330)
45 TIGR02315 ABC_phnC phosphonate 99.9 6.8E-22 1.5E-26 192.8 13.2 109 3-117 125-233 (243)
46 cd03296 ABC_CysA_sulfate_impor 99.9 6.9E-22 1.5E-26 192.4 13.1 110 3-118 116-225 (239)
47 cd03294 ABC_Pro_Gly_Bertaine T 99.9 8E-22 1.7E-26 195.3 13.8 110 3-118 140-249 (269)
48 TIGR01186 proV glycine betaine 99.9 7.4E-22 1.6E-26 202.4 13.7 112 2-119 108-219 (363)
49 cd03219 ABC_Mj1267_LivG_branch 99.9 7.7E-22 1.7E-26 191.6 13.1 109 3-118 123-231 (236)
50 PRK11000 maltose/maltodextrin 99.9 7.8E-22 1.7E-26 203.6 13.7 112 2-119 112-223 (369)
51 COG1116 TauB ABC-type nitrate/ 99.9 4.7E-22 1E-26 188.9 11.1 99 2-106 109-207 (248)
52 PRK09536 btuD corrinoid ABC tr 99.9 6.3E-22 1.4E-26 205.3 13.1 110 2-118 118-227 (402)
53 cd03259 ABC_Carb_Solutes_like 99.9 7.6E-22 1.7E-26 188.7 12.6 104 3-112 110-213 (213)
54 COG3839 MalK ABC-type sugar tr 99.9 4.3E-22 9.4E-27 199.4 11.3 113 2-120 112-224 (338)
55 PRK09473 oppD oligopeptide tra 99.9 9.2E-22 2E-26 200.1 13.8 115 2-119 137-251 (330)
56 PRK11607 potG putrescine trans 99.9 8.3E-22 1.8E-26 203.4 13.5 112 2-119 128-239 (377)
57 TIGR01187 potA spermidine/putr 99.9 1.1E-21 2.4E-26 199.3 14.1 111 3-119 80-190 (325)
58 cd03265 ABC_DrrA DrrA is the A 99.9 9.4E-22 2E-26 189.0 12.8 109 3-117 111-219 (220)
59 PRK15079 oligopeptide ABC tran 99.9 9E-22 2E-26 200.1 13.4 111 2-118 139-250 (331)
60 TIGR01288 nodI ATP-binding ABC 99.9 1E-21 2.2E-26 197.9 13.6 110 3-119 115-224 (303)
61 TIGR01184 ntrCD nitrate transp 99.9 7.4E-22 1.6E-26 191.1 12.0 109 3-117 94-202 (230)
62 PRK13636 cbiO cobalt transport 99.9 1.2E-21 2.6E-26 195.5 13.7 112 2-119 120-231 (283)
63 cd03258 ABC_MetN_methionine_tr 99.9 1.2E-21 2.7E-26 189.8 13.3 110 3-118 120-229 (233)
64 PRK11308 dppF dipeptide transp 99.9 1.2E-21 2.6E-26 199.0 13.7 112 2-119 132-244 (327)
65 PRK13646 cbiO cobalt transport 99.9 1.6E-21 3.4E-26 194.9 14.3 112 2-119 123-235 (286)
66 PRK10771 thiQ thiamine transpo 99.9 1.5E-21 3.3E-26 189.2 13.6 111 3-119 109-219 (232)
67 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.2E-21 2.6E-26 188.3 12.7 107 3-115 111-219 (220)
68 PRK11144 modC molybdate transp 99.9 1.3E-21 2.9E-26 200.8 13.8 112 2-119 107-218 (352)
69 cd03260 ABC_PstB_phosphate_tra 99.9 1.2E-21 2.7E-26 189.0 12.7 108 3-116 119-226 (227)
70 PF01061 ABC2_membrane: ABC-2 99.9 4.7E-23 1E-27 194.7 2.4 206 206-427 1-210 (210)
71 cd03218 ABC_YhbG The ABC trans 99.9 1.4E-21 3.1E-26 189.2 12.9 109 3-118 113-221 (232)
72 PRK13652 cbiO cobalt transport 99.9 1.8E-21 3.9E-26 193.7 13.8 111 3-119 117-227 (277)
73 TIGR02770 nickel_nikD nickel i 99.9 2E-21 4.3E-26 188.1 13.5 110 3-118 102-214 (230)
74 PRK11831 putative ABC transpor 99.9 1.8E-21 3.9E-26 192.9 13.4 110 3-118 123-232 (269)
75 PRK11264 putative amino-acid A 99.9 2E-21 4.3E-26 190.4 13.6 109 3-118 124-232 (250)
76 PRK13651 cobalt transporter AT 99.9 2E-21 4.2E-26 195.7 13.6 110 2-118 143-253 (305)
77 TIGR02142 modC_ABC molybdenum 99.9 1.8E-21 3.9E-26 200.0 13.6 111 3-119 111-221 (354)
78 PRK13643 cbiO cobalt transport 99.9 2.3E-21 4.9E-26 193.9 14.0 109 3-118 123-232 (288)
79 PRK11300 livG leucine/isoleuci 99.9 2.1E-21 4.5E-26 190.8 13.1 110 3-118 133-242 (255)
80 PRK09493 glnQ glutamine ABC tr 99.9 2.3E-21 5E-26 188.8 13.2 109 3-118 116-224 (240)
81 PRK10070 glycine betaine trans 99.9 2.5E-21 5.4E-26 200.7 14.2 111 2-118 143-253 (400)
82 cd03301 ABC_MalK_N The N-termi 99.9 2.1E-21 4.5E-26 185.6 12.5 104 3-112 110-213 (213)
83 PRK13650 cbiO cobalt transport 99.9 2.7E-21 5.9E-26 192.5 13.8 110 2-118 119-228 (279)
84 PRK13647 cbiO cobalt transport 99.9 2.6E-21 5.6E-26 192.2 13.6 109 2-117 117-225 (274)
85 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.7E-21 5.9E-26 188.6 13.3 110 3-118 113-224 (242)
86 PRK13638 cbiO cobalt transport 99.9 3E-21 6.6E-26 191.4 13.5 109 3-118 116-224 (271)
87 cd03226 ABC_cobalt_CbiO_domain 99.9 2.8E-21 6.1E-26 183.7 12.7 100 3-109 106-205 (205)
88 PRK13641 cbiO cobalt transport 99.9 3.4E-21 7.4E-26 192.6 13.9 110 2-118 123-233 (287)
89 PRK10253 iron-enterobactin tra 99.9 3.4E-21 7.3E-26 190.5 13.6 110 3-118 123-232 (265)
90 COG4175 ProV ABC-type proline/ 99.9 2.1E-21 4.5E-26 188.2 11.6 112 2-119 143-254 (386)
91 TIGR03415 ABC_choXWV_ATP choli 99.9 3E-21 6.6E-26 198.8 13.5 111 2-118 143-253 (382)
92 PRK13631 cbiO cobalt transport 99.9 3.6E-21 7.8E-26 194.9 13.8 110 2-118 154-264 (320)
93 TIGR03522 GldA_ABC_ATP gliding 99.9 2.9E-21 6.4E-26 194.3 13.1 110 2-119 112-221 (301)
94 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.1E-21 6.7E-26 184.2 12.5 104 3-112 108-211 (211)
95 cd03297 ABC_ModC_molybdenum_tr 99.9 3.3E-21 7.1E-26 184.5 12.6 104 3-112 111-214 (214)
96 PRK13633 cobalt transporter AT 99.9 4E-21 8.8E-26 191.4 13.6 111 2-119 123-233 (280)
97 PRK13645 cbiO cobalt transport 99.9 4.5E-21 9.8E-26 191.9 13.7 110 3-118 129-239 (289)
98 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 5.2E-21 1.1E-25 185.9 13.8 110 3-119 112-221 (236)
99 PRK09984 phosphonate/organopho 99.9 4.1E-21 8.9E-26 189.5 13.2 109 3-117 132-240 (262)
100 TIGR02769 nickel_nikE nickel i 99.9 4.9E-21 1.1E-25 189.3 13.5 110 3-118 129-239 (265)
101 PRK10418 nikD nickel transport 99.9 6.4E-21 1.4E-25 187.3 14.1 110 3-118 117-229 (254)
102 TIGR03005 ectoine_ehuA ectoine 99.9 5.4E-21 1.2E-25 187.6 13.4 110 3-118 126-235 (252)
103 PRK10619 histidine/lysine/argi 99.8 6.5E-21 1.4E-25 187.6 13.9 109 3-118 131-240 (257)
104 TIGR00960 3a0501s02 Type II (G 99.8 3.7E-21 8E-26 184.3 11.8 100 2-108 117-216 (216)
105 PRK11247 ssuB aliphatic sulfon 99.8 5.6E-21 1.2E-25 187.9 13.2 108 2-115 112-219 (257)
106 COG4598 HisP ABC-type histidin 99.8 4.5E-21 9.7E-26 172.0 11.2 110 2-118 131-240 (256)
107 COG3842 PotA ABC-type spermidi 99.8 1.6E-21 3.4E-26 196.4 9.3 112 2-119 115-226 (352)
108 cd03268 ABC_BcrA_bacitracin_re 99.8 3.9E-21 8.5E-26 183.1 11.6 104 2-112 105-208 (208)
109 PRK11231 fecE iron-dicitrate t 99.8 5.9E-21 1.3E-25 187.7 13.2 109 3-118 118-226 (255)
110 PRK14250 phosphate ABC transpo 99.8 7.7E-21 1.7E-25 185.3 13.8 110 3-118 110-220 (241)
111 PRK10575 iron-hydroxamate tran 99.8 6.4E-21 1.4E-25 188.5 13.3 110 3-118 127-236 (265)
112 cd03224 ABC_TM1139_LivF_branch 99.8 5.1E-21 1.1E-25 184.0 12.2 109 3-118 111-220 (222)
113 PRK13639 cbiO cobalt transport 99.8 7.5E-21 1.6E-25 189.0 13.7 109 3-118 117-225 (275)
114 cd03263 ABC_subfamily_A The AB 99.8 5.2E-21 1.1E-25 183.8 12.2 107 3-117 113-219 (220)
115 PRK14245 phosphate ABC transpo 99.8 7.5E-21 1.6E-25 186.3 13.5 112 3-118 122-233 (250)
116 TIGR00972 3a0107s01c2 phosphat 99.8 7.1E-21 1.5E-25 186.2 13.3 108 3-118 120-231 (247)
117 COG2884 FtsE Predicted ATPase 99.8 5.3E-21 1.2E-25 173.3 11.4 105 2-113 116-220 (223)
118 TIGR02323 CP_lyasePhnK phospho 99.8 8E-21 1.7E-25 186.5 13.6 110 3-118 127-237 (253)
119 PRK11701 phnK phosphonate C-P 99.8 8.2E-21 1.8E-25 187.0 13.7 110 3-118 130-240 (258)
120 PRK13644 cbiO cobalt transport 99.8 7E-21 1.5E-25 189.1 13.3 108 3-118 116-223 (274)
121 PRK13635 cbiO cobalt transport 99.8 7.7E-21 1.7E-25 189.2 13.7 111 2-119 119-229 (279)
122 PRK11614 livF leucine/isoleuci 99.8 4.6E-21 1E-25 186.3 11.8 109 3-118 116-225 (237)
123 TIGR03771 anch_rpt_ABC anchore 99.8 7E-21 1.5E-25 183.5 12.9 108 3-118 93-200 (223)
124 PRK13648 cbiO cobalt transport 99.8 9.2E-21 2E-25 187.8 13.9 109 3-118 122-230 (269)
125 PRK11124 artP arginine transpo 99.8 8.2E-21 1.8E-25 185.2 13.3 108 3-117 121-228 (242)
126 PRK10895 lipopolysaccharide AB 99.8 6.9E-21 1.5E-25 185.6 12.7 109 3-118 117-225 (241)
127 PRK13548 hmuV hemin importer A 99.8 8E-21 1.7E-25 187.1 13.3 110 3-118 114-229 (258)
128 PRK13640 cbiO cobalt transport 99.8 7.7E-21 1.7E-25 189.6 13.3 111 2-119 122-232 (282)
129 TIGR01277 thiQ thiamine ABC tr 99.8 8.1E-21 1.7E-25 181.7 12.8 105 3-113 108-212 (213)
130 TIGR01978 sufC FeS assembly AT 99.8 9.4E-21 2E-25 184.7 13.5 109 3-118 122-233 (243)
131 cd03269 ABC_putative_ATPase Th 99.8 6.4E-21 1.4E-25 181.9 11.9 103 3-112 108-210 (210)
132 PRK13649 cbiO cobalt transport 99.8 8.4E-21 1.8E-25 189.1 13.3 109 3-118 124-233 (280)
133 PRK15112 antimicrobial peptide 99.8 8.6E-21 1.9E-25 187.8 13.2 110 3-118 128-238 (267)
134 TIGR03411 urea_trans_UrtD urea 99.8 9E-21 1.9E-25 184.8 13.1 108 3-118 123-230 (242)
135 cd03266 ABC_NatA_sodium_export 99.8 7.1E-21 1.5E-25 182.6 12.0 103 3-112 116-218 (218)
136 cd03299 ABC_ModC_like Archeal 99.8 1.2E-20 2.5E-25 183.3 13.6 110 3-118 109-218 (235)
137 TIGR03740 galliderm_ABC gallid 99.8 8.1E-21 1.8E-25 182.9 12.4 107 3-116 104-210 (223)
138 COG1123 ATPase components of v 99.8 5.5E-21 1.2E-25 200.4 11.9 112 2-118 407-518 (539)
139 TIGR03873 F420-0_ABC_ATP propo 99.8 1.1E-20 2.4E-25 185.8 13.2 109 3-118 117-225 (256)
140 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 7.4E-21 1.6E-25 182.4 11.3 99 3-108 120-218 (218)
141 cd03300 ABC_PotA_N PotA is an 99.8 1.6E-20 3.6E-25 181.9 13.8 110 3-118 110-219 (232)
142 cd03235 ABC_Metallic_Cations A 99.8 1.1E-20 2.4E-25 180.7 12.2 102 3-112 112-213 (213)
143 COG4148 ModC ABC-type molybdat 99.8 4.6E-21 1E-25 182.9 9.5 112 2-119 107-218 (352)
144 PRK11629 lolD lipoprotein tran 99.8 1.4E-20 3.1E-25 182.4 13.1 106 2-114 124-229 (233)
145 cd03267 ABC_NatA_like Similar 99.8 1.2E-20 2.6E-25 183.4 12.5 104 3-112 133-236 (236)
146 COG1117 PstB ABC-type phosphat 99.8 4.1E-21 8.8E-26 177.1 8.4 112 2-118 124-236 (253)
147 PRK13632 cbiO cobalt transport 99.8 1.8E-20 3.8E-25 186.0 13.5 109 3-118 122-230 (271)
148 cd03264 ABC_drug_resistance_li 99.8 1.2E-20 2.7E-25 180.0 11.9 102 3-112 110-211 (211)
149 PRK14258 phosphate ABC transpo 99.8 2.3E-20 5E-25 184.1 14.0 115 3-119 126-245 (261)
150 PRK14268 phosphate ABC transpo 99.8 1.9E-20 4.2E-25 184.3 13.4 112 3-118 130-241 (258)
151 PRK11248 tauB taurine transpor 99.8 1.6E-20 3.5E-25 184.6 12.8 107 3-115 108-216 (255)
152 PRK14242 phosphate transporter 99.8 2.1E-20 4.5E-25 183.5 13.3 112 3-118 125-236 (253)
153 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.7E-20 3.7E-25 180.9 12.4 103 3-112 122-224 (224)
154 PRK14273 phosphate ABC transpo 99.8 2.3E-20 4.9E-25 183.4 13.4 108 3-118 126-237 (254)
155 TIGR03410 urea_trans_UrtE urea 99.8 1.4E-20 3.1E-25 182.0 11.9 109 3-117 110-219 (230)
156 PRK03695 vitamin B12-transport 99.8 2.5E-20 5.5E-25 182.5 13.5 109 3-118 106-221 (248)
157 cd03234 ABCG_White The White s 99.8 2.6E-20 5.6E-25 179.8 13.4 103 4-112 123-226 (226)
158 PRK14247 phosphate ABC transpo 99.8 2.7E-20 5.8E-25 182.4 13.7 112 3-118 122-233 (250)
159 PRK13642 cbiO cobalt transport 99.8 2.6E-20 5.6E-25 185.3 13.7 109 3-118 120-228 (277)
160 cd03225 ABC_cobalt_CbiO_domain 99.8 1.7E-20 3.6E-25 179.1 11.9 98 3-107 114-211 (211)
161 PRK10419 nikE nickel transport 99.8 1.9E-20 4.2E-25 185.4 12.7 110 3-118 130-240 (268)
162 PRK13547 hmuV hemin importer A 99.8 2.6E-20 5.6E-25 184.7 13.5 110 3-118 125-243 (272)
163 PRK14244 phosphate ABC transpo 99.8 2.5E-20 5.5E-25 182.7 13.3 112 3-118 125-236 (251)
164 TIGR03269 met_CoM_red_A2 methy 99.8 2.1E-20 4.6E-25 202.0 14.0 114 2-121 147-260 (520)
165 TIGR02211 LolD_lipo_ex lipopro 99.8 2.2E-20 4.7E-25 179.6 12.4 100 3-109 121-220 (221)
166 TIGR00968 3a0106s01 sulfate AB 99.8 2.9E-20 6.3E-25 180.8 13.2 110 3-118 110-219 (237)
167 CHL00131 ycf16 sulfate ABC tra 99.8 3.8E-20 8.2E-25 181.5 14.1 108 3-117 129-239 (252)
168 PRK15134 microcin C ABC transp 99.8 2E-20 4.4E-25 202.5 13.4 111 2-118 132-245 (529)
169 TIGR02673 FtsE cell division A 99.8 1.9E-20 4.1E-25 179.1 11.7 98 3-107 117-214 (214)
170 cd03292 ABC_FtsE_transporter F 99.8 1.8E-20 4E-25 179.2 11.5 99 3-108 116-214 (214)
171 cd03257 ABC_NikE_OppD_transpor 99.8 2.5E-20 5.4E-25 179.9 12.5 102 5-112 126-228 (228)
172 PRK10261 glutathione transport 99.8 2.3E-20 5.1E-25 205.3 13.8 111 2-118 441-552 (623)
173 PRK09580 sufC cysteine desulfu 99.8 5.6E-20 1.2E-24 179.8 14.9 117 3-126 123-241 (248)
174 cd03214 ABC_Iron-Siderophores_ 99.8 3.2E-20 7E-25 172.9 12.4 100 7-112 81-180 (180)
175 PRK15056 manganese/iron transp 99.8 3.9E-20 8.4E-25 183.6 13.2 108 3-118 122-229 (272)
176 PRK14274 phosphate ABC transpo 99.8 4.3E-20 9.3E-25 182.0 13.2 112 3-118 131-242 (259)
177 PRK14267 phosphate ABC transpo 99.8 4.9E-20 1.1E-24 180.9 13.5 112 3-118 125-236 (253)
178 PRK09544 znuC high-affinity zi 99.8 4E-20 8.7E-25 181.3 12.8 110 2-118 99-208 (251)
179 PRK10938 putative molybdenum t 99.8 3.2E-20 7E-25 199.1 13.3 110 2-118 114-223 (490)
180 COG4172 ABC-type uncharacteriz 99.8 2.8E-20 6E-25 185.4 11.6 113 2-119 404-516 (534)
181 PRK14269 phosphate ABC transpo 99.8 5.2E-20 1.1E-24 180.0 13.6 112 3-118 118-229 (246)
182 cd03262 ABC_HisP_GlnQ_permease 99.8 3.2E-20 6.8E-25 177.4 11.8 99 3-108 115-213 (213)
183 PRK15134 microcin C ABC transp 99.8 2.9E-20 6.4E-25 201.2 13.0 110 3-118 404-514 (529)
184 PRK10584 putative ABC transpor 99.8 4.3E-20 9.3E-25 178.4 12.7 103 2-111 125-227 (228)
185 PRK13545 tagH teichoic acids e 99.8 5.4E-20 1.2E-24 193.7 14.4 112 3-121 123-234 (549)
186 PRK10744 pstB phosphate transp 99.8 5.5E-20 1.2E-24 181.3 13.5 112 3-118 132-243 (260)
187 PRK14239 phosphate transporter 99.8 5.9E-20 1.3E-24 180.1 13.5 112 3-118 124-235 (252)
188 PRK14235 phosphate transporter 99.8 6E-20 1.3E-24 181.8 13.6 112 3-118 139-250 (267)
189 PRK09700 D-allose transporter 99.8 4.3E-20 9.4E-25 199.1 13.4 108 3-117 125-232 (510)
190 PRK14256 phosphate ABC transpo 99.8 7.2E-20 1.6E-24 179.6 13.5 112 3-118 124-235 (252)
191 TIGR03269 met_CoM_red_A2 methy 99.8 5.8E-20 1.2E-24 198.6 14.0 111 3-119 402-517 (520)
192 COG4161 ArtP ABC-type arginine 99.8 4.3E-20 9.3E-25 163.0 10.5 107 2-115 120-226 (242)
193 PRK15439 autoinducer 2 ABC tra 99.8 5.1E-20 1.1E-24 198.4 13.5 110 2-118 119-228 (510)
194 PRK10908 cell division protein 99.8 5.8E-20 1.3E-24 176.8 12.4 100 3-109 117-216 (222)
195 PRK14270 phosphate ABC transpo 99.8 8E-20 1.7E-24 179.2 13.5 111 3-118 123-234 (251)
196 PRK14253 phosphate ABC transpo 99.8 8.7E-20 1.9E-24 178.7 13.6 112 3-118 121-232 (249)
197 cd03252 ABCC_Hemolysin The ABC 99.8 8E-20 1.7E-24 177.6 13.0 91 25-119 135-225 (237)
198 PRK14237 phosphate transporter 99.8 9.9E-20 2.1E-24 180.2 13.8 112 3-118 139-250 (267)
199 PRK14257 phosphate ABC transpo 99.8 8.5E-20 1.8E-24 185.5 13.6 111 4-118 202-312 (329)
200 PRK13549 xylose transporter AT 99.8 5.3E-20 1.1E-24 198.2 12.7 108 3-117 123-230 (506)
201 PRK13546 teichoic acids export 99.8 1.4E-19 3E-24 178.7 14.6 109 4-119 124-232 (264)
202 PRK10762 D-ribose transporter 99.8 5E-20 1.1E-24 198.2 12.4 108 3-117 121-228 (501)
203 PRK14248 phosphate ABC transpo 99.8 9.8E-20 2.1E-24 180.3 13.6 112 3-118 140-251 (268)
204 PRK14262 phosphate ABC transpo 99.8 9.6E-20 2.1E-24 178.5 13.3 113 3-119 122-234 (250)
205 PRK10261 glutathione transport 99.8 5.2E-20 1.1E-24 202.6 12.7 111 2-118 144-257 (623)
206 PRK13549 xylose transporter AT 99.8 5.6E-20 1.2E-24 198.0 12.5 108 3-117 384-492 (506)
207 PRK14236 phosphate transporter 99.8 9.9E-20 2.2E-24 180.7 13.3 112 3-118 144-255 (272)
208 COG4608 AppF ABC-type oligopep 99.8 6.8E-20 1.5E-24 176.3 11.3 112 2-119 87-199 (268)
209 PRK14241 phosphate transporter 99.8 1.3E-19 2.8E-24 178.5 13.3 112 3-118 124-241 (258)
210 PRK15439 autoinducer 2 ABC tra 99.8 6.8E-20 1.5E-24 197.5 12.4 108 3-117 382-490 (510)
211 PRK14240 phosphate transporter 99.8 1.4E-19 3.1E-24 177.2 13.6 112 3-118 122-233 (250)
212 COG4586 ABC-type uncharacteriz 99.8 6.9E-20 1.5E-24 174.5 10.8 115 2-122 135-249 (325)
213 PRK14263 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 178.3 13.6 112 3-118 125-244 (261)
214 PRK14251 phosphate ABC transpo 99.8 1.4E-19 3.1E-24 177.4 13.0 112 3-118 123-234 (251)
215 PRK10982 galactose/methyl gala 99.8 1.2E-19 2.7E-24 194.7 13.5 108 3-117 114-221 (491)
216 PRK14271 phosphate ABC transpo 99.8 1.8E-19 3.8E-24 179.2 13.7 112 3-118 139-250 (276)
217 PRK14249 phosphate ABC transpo 99.8 1.8E-19 4E-24 176.6 13.6 111 4-118 124-234 (251)
218 PRK14259 phosphate ABC transpo 99.8 1.8E-19 4E-24 178.5 13.5 113 3-119 130-253 (269)
219 PRK11288 araG L-arabinose tran 99.8 9.1E-20 2E-24 196.1 12.2 108 3-117 375-483 (501)
220 cd03245 ABCC_bacteriocin_expor 99.8 1.1E-19 2.5E-24 174.4 11.6 106 3-112 109-220 (220)
221 PRK14275 phosphate ABC transpo 99.8 1.7E-19 3.7E-24 180.2 13.3 108 3-118 158-269 (286)
222 PRK14272 phosphate ABC transpo 99.8 2.1E-19 4.6E-24 176.2 13.6 111 4-118 125-235 (252)
223 PRK14261 phosphate ABC transpo 99.8 1.6E-19 3.5E-24 177.2 12.7 112 3-118 125-236 (253)
224 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.9E-19 4E-24 170.6 12.5 93 27-122 103-196 (200)
225 COG4604 CeuD ABC-type enteroch 99.8 4.3E-20 9.3E-25 168.2 7.7 112 2-119 114-225 (252)
226 PRK09700 D-allose transporter 99.8 1.4E-19 3E-24 195.1 13.1 105 3-114 388-493 (510)
227 COG4987 CydC ABC-type transpor 99.8 1.1E-19 2.4E-24 187.5 11.6 113 2-119 442-561 (573)
228 PRK14266 phosphate ABC transpo 99.8 1.9E-19 4.1E-24 176.4 12.8 112 3-118 122-233 (250)
229 PRK14265 phosphate ABC transpo 99.8 2.5E-19 5.4E-24 178.0 13.6 111 4-118 138-257 (274)
230 PRK10762 D-ribose transporter 99.8 1.4E-19 2.9E-24 194.8 12.6 108 3-117 374-482 (501)
231 COG4988 CydD ABC-type transpor 99.8 1.4E-19 3E-24 189.3 12.2 113 2-119 425-543 (559)
232 PRK11174 cysteine/glutathione 99.8 1.5E-19 3.3E-24 198.2 13.2 113 2-119 453-572 (588)
233 cd03251 ABCC_MsbA MsbA is an e 99.8 2.3E-19 5E-24 174.0 12.9 91 25-119 135-225 (234)
234 cd03254 ABCC_Glucan_exporter_l 99.8 1.9E-19 4.1E-24 174.0 12.2 112 4-119 109-226 (229)
235 TIGR02633 xylG D-xylose ABC tr 99.8 1.7E-19 3.6E-24 194.1 13.2 109 3-117 120-228 (500)
236 COG4152 ABC-type uncharacteriz 99.8 9.9E-20 2.1E-24 170.9 9.8 114 2-122 109-222 (300)
237 cd03237 ABC_RNaseL_inhibitor_d 99.8 3.1E-19 6.7E-24 174.4 13.6 109 4-118 96-206 (246)
238 PRK14260 phosphate ABC transpo 99.8 2.5E-19 5.5E-24 176.5 13.0 112 3-118 126-242 (259)
239 PRK14255 phosphate ABC transpo 99.8 3.3E-19 7.2E-24 174.9 13.6 111 4-118 125-235 (252)
240 PRK14243 phosphate transporter 99.8 2.8E-19 6.2E-24 176.6 13.2 112 3-118 127-247 (264)
241 PRK14238 phosphate transporter 99.8 2.9E-19 6.3E-24 177.2 13.3 91 25-118 164-254 (271)
242 COG4181 Predicted ABC-type tra 99.8 1.7E-19 3.7E-24 160.8 10.2 102 2-110 125-226 (228)
243 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 2.3E-19 5E-24 174.4 12.1 92 25-120 136-227 (238)
244 cd03289 ABCC_CFTR2 The CFTR su 99.8 3.1E-19 6.6E-24 177.0 12.9 113 3-119 107-225 (275)
245 TIGR02982 heterocyst_DevA ABC 99.8 2.8E-19 6E-24 171.9 12.3 100 3-109 121-220 (220)
246 PRK14246 phosphate ABC transpo 99.8 3.8E-19 8.2E-24 175.1 13.4 112 3-118 129-240 (257)
247 TIGR01257 rim_protein retinal- 99.8 2.1E-19 4.5E-24 213.9 13.4 113 3-122 2050-2162(2272)
248 PRK14254 phosphate ABC transpo 99.8 4.1E-19 8.9E-24 177.4 13.4 112 3-118 156-268 (285)
249 PRK14264 phosphate ABC transpo 99.8 4.4E-19 9.6E-24 178.8 13.3 112 3-118 176-288 (305)
250 cd03270 ABC_UvrA_I The excisio 99.8 6.2E-19 1.4E-23 170.2 13.7 100 5-112 118-226 (226)
251 COG4172 ABC-type uncharacteriz 99.8 2.4E-19 5.2E-24 178.7 10.9 114 2-118 133-246 (534)
252 COG4559 ABC-type hemin transpo 99.8 3.4E-19 7.3E-24 164.2 11.1 110 3-119 115-230 (259)
253 TIGR02633 xylG D-xylose ABC tr 99.8 3.5E-19 7.5E-24 191.6 12.6 107 3-116 382-489 (500)
254 cd03232 ABC_PDR_domain2 The pl 99.8 4.5E-19 9.7E-24 166.9 11.7 84 28-112 108-192 (192)
255 PRK11176 lipid transporter ATP 99.8 6.1E-19 1.3E-23 193.2 14.5 113 2-119 448-567 (582)
256 cd03233 ABC_PDR_domain1 The pl 99.8 5E-19 1.1E-23 167.9 12.0 90 23-112 113-202 (202)
257 cd03213 ABCG_EPDR ABCG transpo 99.8 5.5E-19 1.2E-23 166.6 12.0 84 28-112 111-194 (194)
258 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 5.9E-19 1.3E-23 196.8 13.8 111 2-119 556-673 (686)
259 PRK11288 araG L-arabinose tran 99.8 6E-19 1.3E-23 189.8 13.3 105 3-114 120-224 (501)
260 PRK11160 cysteine/glutathione 99.8 6.7E-19 1.5E-23 192.4 13.9 113 2-119 444-562 (574)
261 COG2274 SunT ABC-type bacterio 99.8 3.6E-19 7.8E-24 195.6 11.7 101 15-120 597-697 (709)
262 cd03253 ABCC_ATM1_transporter 99.8 8.4E-19 1.8E-23 170.2 12.8 91 25-119 134-224 (236)
263 PRK14252 phosphate ABC transpo 99.8 1.1E-18 2.5E-23 172.4 13.7 112 3-118 137-248 (265)
264 cd03271 ABC_UvrA_II The excisi 99.8 1.4E-18 3E-23 170.4 13.7 104 3-114 148-261 (261)
265 PRK15177 Vi polysaccharide exp 99.8 1.2E-18 2.6E-23 166.8 12.9 110 7-124 88-197 (213)
266 COG0410 LivF ABC-type branched 99.8 1E-18 2.2E-23 163.7 12.0 110 4-119 116-226 (237)
267 PRK10790 putative multidrug tr 99.8 1.3E-18 2.8E-23 191.0 14.9 112 2-118 444-562 (592)
268 PRK10982 galactose/methyl gala 99.8 7.9E-19 1.7E-23 188.5 12.6 106 3-115 370-476 (491)
269 TIGR01842 type_I_sec_PrtD type 99.8 1.1E-18 2.4E-23 189.7 13.8 99 17-119 444-542 (544)
270 cd03216 ABC_Carb_Monos_I This 99.8 1E-18 2.2E-23 160.2 11.4 81 28-110 82-162 (163)
271 cd03288 ABCC_SUR2 The SUR doma 99.8 1.4E-18 3E-23 171.1 13.0 91 25-119 153-243 (257)
272 TIGR01257 rim_protein retinal- 99.8 8.4E-19 1.8E-23 208.8 13.4 112 2-121 1040-1151(2272)
273 TIGR03375 type_I_sec_LssB type 99.8 1E-18 2.3E-23 195.1 13.4 113 3-120 570-689 (694)
274 TIGR02203 MsbA_lipidA lipid A 99.8 1E-18 2.2E-23 191.0 12.9 112 2-118 437-555 (571)
275 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1.3E-18 2.9E-23 194.8 13.9 111 2-119 583-700 (710)
276 cd03238 ABC_UvrA The excision 99.8 2.9E-18 6.2E-23 158.7 13.4 99 6-112 69-170 (176)
277 PRK10247 putative ABC transpor 99.8 1.3E-18 2.8E-23 167.9 11.3 104 3-113 116-221 (225)
278 KOG0055|consensus 99.8 9.3E-19 2E-23 196.3 11.4 102 13-119 475-576 (1228)
279 cd03244 ABCC_MRP_domain2 Domai 99.8 1.8E-18 3.9E-23 166.3 11.9 106 3-113 108-220 (221)
280 TIGR03608 L_ocin_972_ABC putat 99.8 1.6E-18 3.6E-23 164.6 11.4 94 2-103 113-206 (206)
281 COG1132 MdlB ABC-type multidru 99.8 2E-18 4.4E-23 188.5 13.3 99 16-119 454-552 (567)
282 TIGR01846 type_I_sec_HlyB type 99.8 2.3E-18 5E-23 192.3 14.0 112 3-119 562-680 (694)
283 COG1119 ModF ABC-type molybden 99.8 1.7E-18 3.6E-23 163.6 10.9 106 2-113 150-256 (257)
284 PRK10938 putative molybdenum t 99.8 1.6E-18 3.6E-23 186.0 12.0 104 3-112 380-485 (490)
285 TIGR01193 bacteriocin_ABC ABC- 99.8 2.4E-18 5.2E-23 192.6 13.6 111 3-119 580-697 (708)
286 PRK13657 cyclic beta-1,2-gluca 99.8 3.4E-18 7.3E-23 187.6 14.5 111 3-118 440-557 (588)
287 TIGR01192 chvA glucan exporter 99.8 3.1E-18 6.6E-23 187.5 14.0 98 17-119 461-558 (585)
288 TIGR00958 3a01208 Conjugate Tr 99.8 2.3E-18 5E-23 192.5 12.8 111 2-119 585-702 (711)
289 PRK10789 putative multidrug tr 99.8 3.5E-18 7.6E-23 186.6 13.9 112 3-119 420-538 (569)
290 cd03230 ABC_DR_subfamily_A Thi 99.8 2E-18 4.3E-23 159.8 10.2 78 29-108 96-173 (173)
291 cd03248 ABCC_TAP TAP, the Tran 99.8 2.4E-18 5.1E-23 166.1 11.0 96 4-108 129-226 (226)
292 cd03215 ABC_Carb_Monos_II This 99.8 2E-18 4.4E-23 161.1 10.0 78 29-108 105-182 (182)
293 cd03247 ABCC_cytochrome_bd The 99.8 3.3E-18 7.2E-23 159.0 11.0 83 26-112 96-178 (178)
294 cd03246 ABCC_Protease_Secretio 99.8 2.8E-18 6E-23 158.8 10.3 77 29-108 97-173 (173)
295 cd03231 ABC_CcmA_heme_exporter 99.8 3.3E-18 7.2E-23 162.1 11.1 95 2-103 104-198 (201)
296 cd03236 ABC_RNaseL_inhibitor_d 99.8 3.9E-18 8.5E-23 167.4 11.8 103 2-112 118-220 (255)
297 cd03229 ABC_Class3 This class 99.8 3.5E-18 7.5E-23 158.9 10.6 78 29-107 101-178 (178)
298 cd03369 ABCC_NFT1 Domain 2 of 99.8 5.3E-18 1.1E-22 161.4 11.6 86 25-114 122-207 (207)
299 PRK13409 putative ATPase RIL; 99.8 3.8E-18 8.2E-23 185.9 12.0 105 3-114 433-537 (590)
300 PRK13543 cytochrome c biogenes 99.7 5.5E-18 1.2E-22 162.2 11.4 96 3-105 117-212 (214)
301 PRK15064 ABC transporter ATP-b 99.7 5.7E-18 1.2E-22 183.5 12.9 108 3-119 134-242 (530)
302 PRK13538 cytochrome c biogenes 99.7 4.5E-18 9.7E-23 161.6 10.6 95 2-103 108-202 (204)
303 cd03222 ABC_RNaseL_inhibitor T 99.7 5.9E-18 1.3E-22 156.8 11.1 89 29-118 72-162 (177)
304 TIGR02204 MsbA_rel ABC transpo 99.7 7.4E-18 1.6E-22 184.5 13.5 111 3-118 445-562 (576)
305 KOG0058|consensus 99.7 3.7E-18 8.1E-23 181.9 10.6 103 12-119 589-691 (716)
306 KOG0057|consensus 99.7 6.4E-18 1.4E-22 174.6 11.9 112 3-119 456-574 (591)
307 KOG0055|consensus 99.7 4.3E-18 9.4E-23 191.0 11.2 103 12-119 1111-1213(1228)
308 PRK15064 ABC transporter ATP-b 99.7 7.3E-18 1.6E-22 182.6 12.5 107 3-119 417-525 (530)
309 COG0396 sufC Cysteine desulfur 99.7 1.9E-17 4.1E-22 154.7 13.3 118 2-127 121-241 (251)
310 TIGR02324 CP_lyasePhnL phospho 99.7 9.2E-18 2E-22 161.7 11.4 95 3-104 128-223 (224)
311 cd03291 ABCC_CFTR1 The CFTR su 99.7 1.8E-17 3.9E-22 165.0 13.6 91 25-119 156-247 (282)
312 PTZ00265 multidrug resistance 99.7 1E-17 2.3E-22 198.4 12.9 113 3-118 1327-1451(1466)
313 PRK10535 macrolide transporter 99.7 1.5E-17 3.2E-22 183.9 12.8 109 2-118 123-231 (648)
314 TIGR01166 cbiO cobalt transpor 99.7 1.1E-17 2.4E-22 157.1 10.0 82 3-90 107-188 (190)
315 PRK10522 multidrug transporter 99.7 2.6E-17 5.7E-22 179.0 14.3 105 3-111 424-530 (547)
316 PTZ00265 multidrug resistance 99.7 2E-17 4.2E-22 196.1 13.1 101 3-106 548-655 (1466)
317 PRK11819 putative ABC transpor 99.7 2.2E-17 4.9E-22 179.7 12.6 105 3-118 144-249 (556)
318 COG4525 TauB ABC-type taurine 99.7 2.7E-17 5.9E-22 149.7 10.8 113 2-120 111-225 (259)
319 cd03290 ABCC_SUR1_N The SUR do 99.7 2.7E-17 5.8E-22 157.8 11.3 100 4-107 110-218 (218)
320 PRK10636 putative ABC transpor 99.7 2.5E-17 5.5E-22 181.7 12.6 107 3-119 409-517 (638)
321 TIGR01189 ccmA heme ABC export 99.7 2.4E-17 5.2E-22 155.8 10.5 91 3-102 107-197 (198)
322 PRK13539 cytochrome c biogenes 99.7 2.7E-17 5.8E-22 156.7 10.8 94 3-105 107-200 (207)
323 cd03250 ABCC_MRP_domain1 Domai 99.7 3.1E-17 6.7E-22 155.8 11.2 80 25-107 124-204 (204)
324 cd03228 ABCC_MRP_Like The MRP 99.7 2.5E-17 5.4E-22 152.1 10.0 75 29-107 97-171 (171)
325 TIGR01194 cyc_pep_trnsptr cycl 99.7 5.2E-17 1.1E-21 176.9 13.9 107 2-111 443-551 (555)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 4.2E-17 9.1E-22 177.5 12.8 106 3-119 142-248 (552)
327 PRK10636 putative ABC transpor 99.7 4.5E-17 9.8E-22 179.6 12.8 106 3-118 128-235 (638)
328 PLN03232 ABC transporter C fam 99.7 5.9E-17 1.3E-21 193.3 14.4 112 3-119 1340-1458(1495)
329 PLN03073 ABC transporter F fam 99.7 6.7E-17 1.4E-21 179.4 13.6 108 3-120 606-715 (718)
330 PRK11147 ABC transporter ATPas 99.7 6.8E-17 1.5E-21 178.4 13.0 104 3-118 138-242 (635)
331 COG4618 ArpD ABC-type protease 99.7 5.1E-17 1.1E-21 166.5 11.0 108 11-122 456-563 (580)
332 PLN03130 ABC transporter C fam 99.7 7.7E-17 1.7E-21 192.7 14.3 112 3-119 1343-1461(1622)
333 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 5.8E-17 1.3E-21 145.4 9.9 77 26-107 68-144 (144)
334 PRK13409 putative ATPase RIL; 99.7 5.9E-17 1.3E-21 176.6 11.8 97 2-106 191-287 (590)
335 COG4107 PhnK ABC-type phosphon 99.7 7.5E-17 1.6E-21 144.2 10.2 111 4-119 131-241 (258)
336 TIGR00957 MRP_assoc_pro multi 99.7 1.2E-16 2.5E-21 191.1 14.4 112 3-119 1390-1508(1522)
337 cd03223 ABCD_peroxisomal_ALDP 99.7 1E-16 2.2E-21 147.4 10.6 75 26-106 89-163 (166)
338 COG1129 MglA ABC-type sugar tr 99.7 1.5E-16 3.3E-21 166.0 12.7 106 2-114 124-229 (500)
339 PRK00349 uvrA excinuclease ABC 99.7 1.3E-16 2.8E-21 180.1 12.8 105 7-119 472-585 (943)
340 PLN03232 ABC transporter C fam 99.7 1.1E-16 2.4E-21 191.1 12.8 113 2-119 708-828 (1495)
341 KOG0059|consensus 99.7 8.6E-17 1.9E-21 182.9 11.0 114 2-122 677-790 (885)
342 PTZ00243 ABC transporter; Prov 99.7 1.8E-16 3.8E-21 189.3 14.1 113 2-119 1413-1533(1560)
343 PLN03073 ABC transporter F fam 99.7 1.9E-16 4E-21 175.9 13.2 106 3-118 323-430 (718)
344 PRK13540 cytochrome c biogenes 99.7 1.3E-16 2.7E-21 151.2 10.1 91 3-101 107-197 (200)
345 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.2E-16 4.9E-21 171.8 13.1 104 4-117 423-529 (552)
346 PRK11819 putative ABC transpor 99.7 2.5E-16 5.4E-21 171.5 13.1 105 4-118 425-532 (556)
347 TIGR00630 uvra excinuclease AB 99.7 2.3E-16 4.9E-21 177.8 13.0 103 8-118 471-582 (924)
348 TIGR01271 CFTR_protein cystic 99.7 2.9E-16 6.2E-21 187.3 14.2 113 2-119 1321-1440(1490)
349 COG4674 Uncharacterized ABC-ty 99.7 1.5E-16 3.3E-21 144.9 9.0 110 2-119 126-235 (249)
350 PLN03130 ABC transporter C fam 99.7 2.4E-16 5.2E-21 188.6 13.1 113 2-119 708-828 (1622)
351 cd00267 ABC_ATPase ABC (ATP-bi 99.7 3E-16 6.5E-21 142.8 10.5 78 28-107 80-157 (157)
352 PRK13541 cytochrome c biogenes 99.7 2.7E-16 5.9E-21 148.3 9.7 90 3-100 103-192 (195)
353 PRK00349 uvrA excinuclease ABC 99.7 8.2E-16 1.8E-20 173.6 14.5 108 4-119 810-927 (943)
354 TIGR02857 CydD thiol reductant 99.6 3.6E-16 7.8E-21 169.5 10.5 97 2-103 426-529 (529)
355 COG1129 MglA ABC-type sugar tr 99.6 6.8E-16 1.5E-20 161.2 11.4 105 3-114 380-485 (500)
356 TIGR00630 uvra excinuclease AB 99.6 2.1E-15 4.5E-20 170.1 14.1 106 4-117 808-923 (924)
357 PRK00635 excinuclease ABC subu 99.6 1.8E-15 4E-20 177.8 13.5 106 6-119 791-906 (1809)
358 TIGR00954 3a01203 Peroxysomal 99.6 1.3E-15 2.9E-20 168.6 11.7 96 3-104 553-652 (659)
359 TIGR00957 MRP_assoc_pro multi 99.6 1.7E-15 3.8E-20 181.1 13.1 100 17-119 750-850 (1522)
360 PRK11147 ABC transporter ATPas 99.6 1.8E-15 3.8E-20 167.2 11.6 105 3-117 419-526 (635)
361 COG4619 ABC-type uncharacteriz 99.6 2E-15 4.3E-20 134.5 9.5 101 3-108 112-212 (223)
362 TIGR01271 CFTR_protein cystic 99.6 2.1E-15 4.6E-20 179.9 12.9 97 18-119 539-636 (1490)
363 COG5265 ATM1 ABC-type transpor 99.6 1.4E-15 2.9E-20 153.0 8.9 101 14-119 386-486 (497)
364 TIGR02868 CydC thiol reductant 99.6 1.3E-15 2.8E-20 165.1 9.5 85 2-89 438-529 (529)
365 PRK00635 excinuclease ABC subu 99.6 3.2E-15 7E-20 175.8 13.3 103 8-118 460-571 (1809)
366 PTZ00243 ABC transporter; Prov 99.6 3.5E-15 7.5E-20 178.4 13.2 98 18-119 773-870 (1560)
367 cd03279 ABC_sbcCD SbcCD and ot 99.6 5.1E-15 1.1E-19 141.6 11.2 82 24-107 119-210 (213)
368 COG3845 ABC-type uncharacteriz 99.6 4.8E-15 1E-19 152.2 11.4 105 2-113 119-223 (501)
369 KOG0056|consensus 99.6 2E-15 4.4E-20 153.5 8.3 105 10-119 657-761 (790)
370 cd03278 ABC_SMC_barmotin Barmo 99.6 5.5E-15 1.2E-19 139.6 10.7 92 2-105 95-190 (197)
371 COG0488 Uup ATPase components 99.6 4.6E-15 1E-19 158.4 10.8 105 2-117 133-238 (530)
372 COG1101 PhnK ABC-type uncharac 99.6 4.3E-15 9.4E-20 137.5 9.1 95 11-111 136-230 (263)
373 cd03276 ABC_SMC6_euk Eukaryoti 99.6 4E-15 8.7E-20 140.7 9.2 95 3-107 92-192 (198)
374 cd03275 ABC_SMC1_euk Eukaryoti 99.6 8.8E-15 1.9E-19 143.2 10.9 99 3-104 113-232 (247)
375 COG4167 SapF ABC-type antimicr 99.6 2.1E-14 4.5E-19 129.7 11.0 112 2-119 127-239 (267)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.6 1.6E-14 3.5E-19 140.8 10.9 77 24-104 154-234 (243)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.6 2.8E-14 6.1E-19 140.0 12.3 99 2-104 125-242 (251)
378 cd03240 ABC_Rad50 The catalyti 99.5 2.1E-14 4.7E-19 136.4 9.8 82 24-107 111-200 (204)
379 COG1134 TagH ABC-type polysacc 99.5 5.3E-14 1.1E-18 133.3 11.5 115 2-123 126-240 (249)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.9E-14 4.1E-19 137.5 8.2 92 5-105 109-204 (212)
381 KOG0054|consensus 99.5 7.8E-14 1.7E-18 160.4 12.1 114 2-119 611-731 (1381)
382 COG4170 SapD ABC-type antimicr 99.5 2.5E-14 5.3E-19 131.7 4.9 115 2-119 134-248 (330)
383 TIGR01247 drrB daunorubicin re 99.5 1.5E-11 3.2E-16 119.4 23.5 223 214-485 1-234 (236)
384 COG4138 BtuD ABC-type cobalami 99.4 1.8E-14 4E-19 129.1 1.6 109 3-118 105-220 (248)
385 COG4778 PhnL ABC-type phosphon 99.4 1.6E-13 3.4E-18 122.7 6.7 98 2-105 130-227 (235)
386 cd03239 ABC_SMC_head The struc 99.4 5.3E-13 1.1E-17 124.0 10.4 75 28-105 94-172 (178)
387 COG0488 Uup ATPase components 99.4 5.8E-13 1.3E-17 142.4 11.3 108 2-119 417-525 (530)
388 KOG0927|consensus 99.4 4.3E-13 9.2E-18 138.8 9.2 108 3-119 200-309 (614)
389 COG3845 ABC-type uncharacteriz 99.4 4.1E-13 8.9E-18 138.1 9.0 110 2-117 381-490 (501)
390 cd03277 ABC_SMC5_euk Eukaryoti 99.4 4.2E-13 9.2E-18 128.3 8.4 83 24-107 122-211 (213)
391 COG4133 CcmA ABC-type transpor 99.4 1.2E-12 2.5E-17 119.2 9.2 84 2-91 109-192 (209)
392 COG0178 UvrA Excinuclease ATPa 99.4 2.6E-12 5.6E-17 138.5 12.1 107 6-119 804-919 (935)
393 COG1245 Predicted ATPase, RNas 99.4 2.2E-12 4.8E-17 131.1 9.5 96 3-105 193-288 (591)
394 COG1245 Predicted ATPase, RNas 99.3 3.3E-12 7.1E-17 129.8 10.3 118 5-128 437-560 (591)
395 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 4.5E-11 9.7E-16 113.7 17.5 150 295-492 57-208 (208)
396 cd03227 ABC_Class2 ABC-type Cl 99.3 4.3E-12 9.2E-17 116.2 9.4 76 27-105 76-155 (162)
397 cd03241 ABC_RecN RecN ATPase i 99.3 3.4E-12 7.3E-17 127.0 9.2 77 27-107 169-249 (276)
398 KOG0054|consensus 99.3 8.4E-12 1.8E-16 143.9 12.8 98 17-119 1265-1362(1381)
399 COG4136 ABC-type uncharacteriz 99.3 3E-12 6.5E-17 112.3 6.8 84 2-90 113-196 (213)
400 TIGR00634 recN DNA repair prot 99.3 8E-12 1.7E-16 136.2 9.8 77 27-107 439-519 (563)
401 TIGR00025 Mtu_efflux ABC trans 99.3 1.1E-09 2.5E-14 106.0 23.6 222 220-488 3-229 (232)
402 TIGR01291 nodJ ABC-2 type tran 99.3 2.7E-09 5.8E-14 104.9 26.4 232 208-490 7-250 (253)
403 cd03280 ABC_MutS2 MutS2 homolo 99.3 3.3E-12 7.1E-17 121.0 4.7 83 26-112 89-172 (200)
404 PRK10869 recombination and rep 99.2 2.2E-11 4.8E-16 131.9 10.5 77 27-107 429-509 (553)
405 KOG0062|consensus 99.2 2.1E-11 4.5E-16 125.8 9.5 103 3-114 461-564 (582)
406 TIGR00618 sbcc exonuclease Sbc 99.2 2.6E-11 5.6E-16 141.3 10.9 81 24-106 946-1036(1042)
407 KOG0927|consensus 99.2 1.3E-11 2.9E-16 127.8 7.0 106 2-116 487-593 (614)
408 KOG0062|consensus 99.2 9.1E-12 2E-16 128.4 5.6 106 5-119 179-285 (582)
409 PHA02562 46 endonuclease subun 99.2 2.2E-11 4.7E-16 133.2 8.9 79 25-108 465-555 (562)
410 TIGR03861 phenyl_ABC_PedC alco 99.2 7.6E-09 1.7E-13 101.5 25.6 201 205-424 1-219 (253)
411 COG0178 UvrA Excinuclease ATPa 99.2 1.2E-10 2.5E-15 126.0 10.7 92 25-119 478-577 (935)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.1 4.9E-11 1.1E-15 114.8 5.9 84 26-113 87-175 (222)
413 COG4178 ABC-type uncharacteriz 99.1 8.1E-11 1.8E-15 125.8 8.1 99 2-104 488-587 (604)
414 PF00005 ABC_tran: ABC transpo 99.1 8.4E-11 1.8E-15 104.0 6.2 55 2-57 83-137 (137)
415 PRK15066 inner membrane transp 99.1 1.8E-07 4E-12 92.0 28.0 239 205-492 7-254 (257)
416 KOG0066|consensus 99.0 3.7E-10 8.1E-15 114.2 7.9 94 3-105 683-776 (807)
417 COG4615 PvdE ABC-type sideroph 99.0 2.7E-10 5.9E-15 114.2 6.8 110 2-113 422-531 (546)
418 PRK03918 chromosome segregatio 99.0 5.3E-10 1.1E-14 128.6 9.9 77 25-104 785-867 (880)
419 PRK10246 exonuclease subunit S 99.0 1.2E-09 2.6E-14 127.0 10.7 80 24-105 945-1032(1047)
420 KOG2355|consensus 99.0 1.1E-09 2.4E-14 101.1 7.9 111 2-120 128-238 (291)
421 PRK01156 chromosome segregatio 99.0 1.6E-09 3.5E-14 124.7 11.1 78 25-104 798-883 (895)
422 cd03242 ABC_RecF RecF is a rec 99.0 1.3E-09 2.8E-14 108.2 7.4 77 26-108 181-269 (270)
423 TIGR00606 rad50 rad50. This fa 98.9 4.3E-09 9.2E-14 125.3 8.6 71 26-97 1197-1277(1311)
424 cd03243 ABC_MutS_homologs The 98.8 7.3E-09 1.6E-13 98.2 8.1 85 28-116 91-176 (202)
425 TIGR02168 SMC_prok_B chromosom 98.8 5.6E-09 1.2E-13 123.4 7.8 76 25-104 1086-1165(1179)
426 PRK00064 recF recombination pr 98.8 1.1E-08 2.4E-13 105.6 8.5 79 25-108 270-359 (361)
427 COG0842 ABC-type multidrug tra 98.8 1.1E-06 2.4E-11 86.2 21.9 167 282-493 116-285 (286)
428 KOG0066|consensus 98.7 3.4E-09 7.4E-14 107.3 1.8 104 2-114 390-494 (807)
429 PRK02224 chromosome segregatio 98.7 2.8E-08 6.1E-13 114.4 9.4 78 26-106 779-869 (880)
430 TIGR02169 SMC_prok_A chromosom 98.7 2.4E-08 5.2E-13 118.1 8.6 76 25-104 1071-1150(1164)
431 COG2401 ABC-type ATPase fused 98.7 5.5E-08 1.2E-12 98.4 8.8 102 4-109 486-588 (593)
432 KOG0060|consensus 98.6 9.3E-08 2E-12 100.5 9.3 98 2-105 538-641 (659)
433 smart00534 MUTSac ATPase domai 98.6 3.4E-08 7.4E-13 92.4 5.5 80 27-109 60-140 (185)
434 PF02463 SMC_N: RecF/RecN/SMC 98.6 4.1E-07 8.9E-12 87.2 11.3 73 28-104 136-212 (220)
435 PRK14079 recF recombination pr 98.6 1.6E-07 3.4E-12 96.6 8.1 77 28-113 263-348 (349)
436 TIGR00611 recf recF protein. A 98.5 1.4E-07 3E-12 97.5 7.1 60 27-90 274-342 (365)
437 COG0419 SbcC ATPase involved i 98.4 6.6E-07 1.4E-11 103.2 10.0 78 25-105 812-897 (908)
438 TIGR01248 drrC daunorubicin re 98.4 6.5E-06 1.4E-10 74.5 14.4 128 279-423 14-146 (152)
439 cd03282 ABC_MSH4_euk MutS4 hom 98.4 5.4E-07 1.2E-11 85.6 7.0 63 26-90 89-152 (204)
440 KOG0063|consensus 98.4 3E-07 6.4E-12 93.5 5.0 96 3-104 436-531 (592)
441 KOG0063|consensus 98.4 8.1E-07 1.8E-11 90.4 7.1 96 3-105 193-288 (592)
442 cd03283 ABC_MutS-like MutS-lik 98.3 2E-06 4.4E-11 81.4 9.3 62 31-94 88-152 (199)
443 PF13304 AAA_21: AAA domain; P 98.3 1.6E-06 3.5E-11 83.2 8.5 65 25-90 233-300 (303)
444 KOG0064|consensus 98.3 3.7E-07 7.9E-12 95.0 3.8 84 3-90 583-670 (728)
445 cd01124 KaiC KaiC is a circadi 98.3 3.3E-06 7.1E-11 78.5 9.0 80 24-104 67-163 (187)
446 cd03284 ABC_MutS1 MutS1 homolo 98.2 1.4E-06 3.1E-11 83.4 6.0 87 27-117 84-179 (216)
447 TIGR02680 conserved hypothetic 98.2 1.8E-06 3.9E-11 102.9 7.4 59 26-88 1245-1315(1353)
448 cd03281 ABC_MSH5_euk MutS5 hom 98.2 4.4E-06 9.5E-11 79.9 7.1 64 27-90 87-155 (213)
449 PRK00409 recombination and DNA 98.1 3.4E-06 7.4E-11 95.1 6.7 81 26-110 388-469 (782)
450 PF13558 SbcCD_C: Putative exo 98.1 6.3E-06 1.4E-10 67.7 6.1 49 25-73 29-90 (90)
451 PF06422 PDR_CDR: CDR ABC tran 98.1 6E-06 1.3E-10 69.5 5.7 48 447-494 28-77 (103)
452 TIGR03518 ABC_perm_GldF glidin 98.0 0.0016 3.5E-08 63.4 22.7 187 209-422 2-210 (240)
453 COG1682 TagG ABC-type polysacc 98.0 0.0026 5.7E-08 62.7 23.8 205 203-428 15-225 (263)
454 PRK13695 putative NTPase; Prov 97.9 2.5E-05 5.5E-10 72.1 6.7 79 27-112 77-157 (174)
455 TIGR01069 mutS2 MutS2 family p 97.9 2.1E-05 4.5E-10 88.7 6.6 63 26-90 383-446 (771)
456 PTZ00132 GTP-binding nuclear p 97.9 2E-05 4.3E-10 75.2 5.4 43 33-75 157-204 (215)
457 TIGR02858 spore_III_AA stage I 97.7 9.8E-05 2.1E-09 73.1 8.0 68 40-117 188-267 (270)
458 PRK13830 conjugal transfer pro 97.7 7E-05 1.5E-09 85.4 7.6 70 43-114 649-728 (818)
459 PF12679 ABC2_membrane_2: ABC- 97.7 0.019 4E-07 56.5 23.5 159 285-487 89-272 (277)
460 PRK15176 Vi polysaccharide exp 97.7 0.014 3E-07 57.7 22.3 103 345-493 158-262 (264)
461 cd03286 ABC_MSH6_euk MutS6 hom 97.6 0.00014 2.9E-09 69.9 6.9 64 27-90 88-154 (218)
462 PF12698 ABC2_membrane_3: ABC- 97.6 1.5E-05 3.2E-10 80.2 0.0 155 279-484 182-343 (344)
463 cd01128 rho_factor Transcripti 97.4 7.1E-05 1.5E-09 73.2 2.4 77 25-108 126-211 (249)
464 cd03287 ABC_MSH3_euk MutS3 hom 97.4 0.00038 8.3E-09 67.0 7.3 59 32-90 96-155 (222)
465 cd01125 repA Hexameric Replica 97.4 0.00032 6.9E-09 68.3 6.2 81 2-90 58-160 (239)
466 PF13175 AAA_15: AAA ATPase do 97.2 0.00069 1.5E-08 70.8 7.5 66 25-90 338-413 (415)
467 PRK08533 flagellar accessory p 97.2 0.001 2.2E-08 64.4 7.5 60 28-88 95-162 (230)
468 PRK06067 flagellar accessory p 97.1 0.002 4.3E-08 62.4 9.0 75 29-104 101-186 (234)
469 COG3910 Predicted ATPase [Gene 97.1 0.0013 2.8E-08 60.7 6.9 63 25-89 126-188 (233)
470 cd01120 RecA-like_NTPases RecA 97.0 0.0021 4.6E-08 57.4 7.6 64 28-92 67-140 (165)
471 PRK13891 conjugal transfer pro 97.0 0.0015 3.3E-08 74.9 7.2 70 39-110 680-752 (852)
472 COG4637 Predicted ATPase [Gene 96.6 0.0073 1.6E-07 60.0 8.2 62 27-90 269-332 (373)
473 COG0497 RecN ATPase involved i 96.5 0.0092 2E-07 64.1 8.9 74 27-104 430-507 (557)
474 COG1277 NosY ABC-type transpor 96.4 1.1 2.4E-05 44.1 23.8 243 207-488 3-273 (278)
475 PF08370 PDR_assoc: Plant PDR 96.4 0.0059 1.3E-07 46.5 4.4 44 451-494 12-58 (65)
476 KOG0964|consensus 96.1 0.0041 8.8E-08 69.1 3.2 73 27-103 1096-1172(1200)
477 PRK07721 fliI flagellum-specif 96.0 0.027 5.9E-07 59.6 9.0 86 28-116 223-340 (438)
478 TIGR03185 DNA_S_dndD DNA sulfu 96.0 0.013 2.9E-07 65.4 6.7 59 25-88 548-613 (650)
479 COG1196 Smc Chromosome segrega 95.8 0.014 3E-07 69.6 6.1 74 26-103 1064-1141(1163)
480 PRK13873 conjugal transfer ATP 95.7 0.023 5.1E-07 65.1 7.4 47 43-90 632-679 (811)
481 TIGR02788 VirB11 P-type DNA tr 95.5 0.013 2.8E-07 59.3 4.2 73 37-119 209-281 (308)
482 PRK05399 DNA mismatch repair p 95.5 0.041 8.9E-07 63.3 8.4 78 18-99 654-738 (854)
483 PF12051 DUF3533: Protein of u 95.4 0.5 1.1E-05 49.3 15.7 129 295-479 239-380 (382)
484 TIGR02655 circ_KaiC circadian 95.3 0.0024 5.1E-08 68.8 -2.2 68 26-104 113-190 (484)
485 PF03379 CcmB: CcmB protein; 95.2 1.1 2.4E-05 42.9 15.8 134 208-356 1-145 (215)
486 PF09818 ABC_ATPase: Predicted 95.0 0.14 2.9E-06 53.6 9.5 82 26-108 320-416 (448)
487 PF13166 AAA_13: AAA domain 94.6 0.11 2.4E-06 58.7 8.6 65 25-89 497-571 (712)
488 KOG0962|consensus 94.6 0.055 1.2E-06 62.9 6.0 60 29-88 1184-1253(1294)
489 TIGR01190 ccmB heme exporter p 94.2 2.3 5E-05 40.5 15.3 130 212-356 2-142 (211)
490 PRK13898 type IV secretion sys 94.1 0.098 2.1E-06 60.0 6.8 49 42-91 638-687 (800)
491 cd01131 PilT Pilus retraction 93.8 0.084 1.8E-06 49.8 4.7 57 38-104 66-122 (198)
492 PRK06793 fliI flagellum-specif 93.7 0.065 1.4E-06 56.5 4.0 81 26-114 219-306 (432)
493 PRK08699 DNA polymerase III su 93.7 0.1 2.2E-06 53.3 5.2 39 50-90 116-154 (325)
494 TIGR00152 dephospho-CoA kinase 93.3 0.047 1E-06 50.9 2.0 73 31-106 60-133 (188)
495 cd00561 CobA_CobO_BtuR ATP:cor 93.2 0.22 4.8E-06 45.3 6.1 68 36-105 83-154 (159)
496 PRK07414 cob(I)yrinic acid a,c 92.8 0.3 6.6E-06 45.1 6.5 70 36-107 103-176 (178)
497 COG1195 RecF Recombinational D 92.8 0.2 4.4E-06 51.4 5.9 75 28-108 275-361 (363)
498 PF00488 MutS_V: MutS domain V 92.8 0.54 1.2E-05 45.7 8.6 69 26-96 100-171 (235)
499 PF12730 ABC2_membrane_4: ABC- 92.8 7.9 0.00017 35.6 16.7 38 285-322 69-114 (232)
500 KOG0933|consensus 92.8 0.081 1.8E-06 59.5 3.1 72 26-101 1080-1155(1174)
No 1
>KOG0061|consensus
Probab=100.00 E-value=8.8e-81 Score=676.24 Aligned_cols=462 Identities=34% Similarity=0.614 Sum_probs=391.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++|++++++|||++|+||+||+...||+||||||||+||.+|++||++++|||||||||+.++.++++.||++|++ |+|
T Consensus 144 ~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grt 222 (613)
T KOG0061|consen 144 ERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRT 222 (613)
T ss_pred HHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCE
Confidence 5899999999999999999999888999999999999999999999999999999999999999999999999966 999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHHhcCCCccCCCcchhHhhhhcccccccCCCccccccCCCC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWNKSKAAKKCERRSSWLPKRRGFTQAIPKNCNHN 161 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (494)
||+|+|||+++++++||++++|++|+++|+|+++++.+||++.|++|+...++.|+.-++...+.......+..+.....
T Consensus 223 Vi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~ 302 (613)
T KOG0061|consen 223 VICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLI 302 (613)
T ss_pred EEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999997766677666544311111000000000000000
Q ss_pred CCCCCCcchhHHHHhhhhccccccCCCCCCCcCCCCCCccCcHHHHHHHHHHHhHHhh-cchhHHHHHHHHHHHHHHHHH
Q psy16346 162 TFPMPTLSEEEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEA-RPRMLSTLNWVQTIGLGIMAG 240 (494)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-R~~~~~~~r~~~~i~~~ll~G 240 (494)
.. .+......+... ... +... . .........++||.|+++|++|.+++. ||+.+...|.++.+++|+++|
T Consensus 303 ~~-~~~~~~~~~~~~--~~~----~~~~-~-~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg 373 (613)
T KOG0061|consen 303 NK-FSQTDNLKKTLE--ALE----KSLS-T-SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLG 373 (613)
T ss_pred hh-ccccchhhhhHH--HHh----hhcc-c-ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000000 000 0000 0 000111117899999999999999998 999999999999999999999
Q ss_pred HHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhh
Q psy16346 241 LLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYH 320 (494)
Q Consensus 241 ~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~ 320 (494)
++||+++++..+++++.|++|+++.++.+.+++++++.|+.||++|.||+.+|+|+.++|++|+.++++|+.++.+++|.
T Consensus 374 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~ 453 (613)
T KOG0061|consen 374 LLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFS 453 (613)
T ss_pred HHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999989999889999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhccc
Q psy16346 321 LISYPMLGLQ-SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLA 399 (494)
Q Consensus 321 ~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i 399 (494)
+|+|||+|++ +..+|++|++++++..++++++|+++ |+..||...|+.+++++.+++++|+||++
T Consensus 454 ~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i--------------~~~~~~~~~a~~~~~~~~~~f~l~~G~fi 519 (613)
T KOG0061|consen 454 SIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFI--------------SAIVPNLSLATSLGPVLLLPFLLFGGFFI 519 (613)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhccchhheeehHHHHHHHHHHHhhhhc
Confidence 9999999996 67889999999999999999999999 99999999999999999999999999999
Q ss_pred C--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCCCCccCCCCcccCHhHHHhhcCCC-cchHHHHHHHHHHH
Q psy16346 400 T--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACANSTYIPVDAILESQGSS-LPLWCNTLILIGFL 476 (494)
Q Consensus 400 ~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~~~~C~~~~~~~g~~~L~~~~~~-~~~w~~~~il~~~~ 476 (494)
+ +||.||+|++|+||++|++|++++|||.+ ....|... |..++..+|+++++..+++ .+.|.|+.+++++.
T Consensus 520 ~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~-~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~ 593 (613)
T KOG0061|consen 520 NFDSIPKYFRWISYLSYFRYAFEALLINQFSG-GSSRCFLS-----GNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFI 593 (613)
T ss_pred CcccccHHHHHHHHHhHHHHHHHHHHHHHhhc-cccccccC-----cCCcccccHHHHHHhcCCcccccchhHHHHHHHH
Confidence 9 99999999999999999999999999985 56677532 2122366799999999985 78999999999999
Q ss_pred HHHHHHHHHHHHhhccC
Q psy16346 477 VFFRTLGYIVLRYFRRP 493 (494)
Q Consensus 477 ~~~~~l~~~~L~~~~~~ 493 (494)
++||+++|++|+++.+.
T Consensus 594 ~~~~il~y~~L~~~~~~ 610 (613)
T KOG0061|consen 594 VFFRVLGYLALRFRVKR 610 (613)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999999987653
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.9e-80 Score=676.85 Aligned_cols=469 Identities=33% Similarity=0.557 Sum_probs=388.8
Q ss_pred hHHHHHHHHcCCcccccccccCc-cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDY-MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~-~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||++++||.+|+. ..++||||||||++||++|+.+|++++|||||+|||+.++..+++.+++++ ++|+
T Consensus 139 ~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~-~~g~ 217 (617)
T TIGR00955 139 ERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA-QKGK 217 (617)
T ss_pred HHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHH-hCCC
Confidence 36899999999999999999985 368999999999999999999999999999999999999999999999998 4699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHHhcCCCccCCCcchhHhhhhcccccccCCCc-c-ccccC
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWNKSKAAKKCERRSSWLPKRRGFTQ-A-IPKNC 158 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~ 158 (494)
|||+++|||+++++++||++++|++|+++|.|+++++.+||+++|++++...+++|....+...+...+..+ + .++..
T Consensus 218 tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~ 297 (617)
T TIGR00955 218 TIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKIC 297 (617)
T ss_pred EEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHH
Confidence 999999999889999999999999999999999999999999999986655555554433311111000000 0 00000
Q ss_pred CCCCCCCCCcchhHHHHhhhhccccccCCCCCCCcCCCCCCccCcHHHHHHHHHHHhHHhh-cchhHHHHHHHHHHHHHH
Q psy16346 159 NHNTFPMPTLSEEEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEA-RPRMLSTLNWVQTIGLGI 237 (494)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-R~~~~~~~r~~~~i~~~l 237 (494)
+.... .+...+..+......+. +.............++..++++|+++|++|+++.. ||+.+...|+++.+++|+
T Consensus 298 ~~~~~-s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~l 373 (617)
T TIGR00955 298 DSFAV-SDIGRDMLVNTNLWSGK---AGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373 (617)
T ss_pred HHHhc-chhhHHHHHHhhhhhcc---ccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 00000 00000000000000000 00000000011223567899999999999999998 999999999999999999
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHh
Q psy16346 238 MAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPA 317 (494)
Q Consensus 238 l~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~ 317 (494)
++|++||+++.++.+++++.|++|++++++++.++...++.|+.||++|.||+.+|+|++++|++|++++|+|+.++.++
T Consensus 374 i~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~ 453 (617)
T TIGR00955 374 LIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPA 453 (617)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhh
Q psy16346 318 VYHLISYPMLGLQ-SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGG 396 (494)
Q Consensus 318 if~~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~G 396 (494)
+|.+|+|||+|++ ++..|++|++++++..++++++|+++ ++++||..+|+.+++++.+++++|+|
T Consensus 454 if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i--------------~~~~~~~~~a~~~~~~~~~~~~lf~G 519 (617)
T TIGR00955 454 LFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLI--------------SCAFSSTSMALTVGPPFVIPFLLFGG 519 (617)
T ss_pred HHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhcCchHHHHHHHHHHHHHHHHHhh
Confidence 9999999999997 77889999999999999999999999 99999999999999999999999999
Q ss_pred cccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCCCCccCCCCcccCHhHHHhhcCCC-cchHHHHHHHH
Q psy16346 397 YLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACANSTYIPVDAILESQGSS-LPLWCNTLILI 473 (494)
Q Consensus 397 f~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~~~~C~~~~~~~g~~~L~~~~~~-~~~w~~~~il~ 473 (494)
|+++ +||+||+|++|+||++|++|+++.|||++....+|.+.+....|. .+|+++|+.+|++ .+.|+|+++|+
T Consensus 520 ~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~----~~g~~~l~~~g~~~~~~~~~~~il~ 595 (617)
T TIGR00955 520 FFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP----SSGEVILETLSFRNADLYLDLIGLV 595 (617)
T ss_pred cccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC----cChHHHHHhcCCCcccHHHHHHHHH
Confidence 9998 999999999999999999999999999854445787543334463 4699999999997 67999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q psy16346 474 GFLVFFRTLGYIVLRYFRRP 493 (494)
Q Consensus 474 ~~~~~~~~l~~~~L~~~~~~ 493 (494)
++.++|++++|++|+++.+.
T Consensus 596 ~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 596 ILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987654
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.3e-79 Score=673.35 Aligned_cols=466 Identities=31% Similarity=0.570 Sum_probs=374.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++++||++|+...++||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++++ +|+|
T Consensus 180 ~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~T 258 (659)
T PLN03211 180 LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKT 258 (659)
T ss_pred HHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCE
Confidence 357899999999999999999988999999999999999999999999999999999999999999999999984 6999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHHhcCCCccCCCcchhHhhhhcccccccCC--CccccccCC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWNKSKAAKKCERRSSWLPKRRGF--TQAIPKNCN 159 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ 159 (494)
||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++|+...+++|+...+......... .++.+...+
T Consensus 259 vI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~ 338 (659)
T PLN03211 259 IVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQ 338 (659)
T ss_pred EEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHH
Confidence 999999998789999999999999999999999999999999999876555555554333111100000 000000000
Q ss_pred CC--CCCCCCcchhHHHHhhhhccccccC--CCCC-CCcCCCCCCccCcHHHHHHHHHHHhHHhhcchhHHHHHHHHHHH
Q psy16346 160 HN--TFPMPTLSEEEECKQLCLDSQSHAS--SSVS-SSYDDMSWQWPTSFWTQFKVLSQRNFQEARPRMLSTLNWVQTIG 234 (494)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~R~~~~~~~r~~~~i~ 234 (494)
.. .+..................+..+. .... ......+..+.+|||+|+++|++|+++++||+.+..+|+++.++
T Consensus 339 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~ 418 (659)
T PLN03211 339 SLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIA 418 (659)
T ss_pred HHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 00 0000000000000000000000000 0000 00001112356789999999999999988888888899999999
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhHHHH
Q psy16346 235 LGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTIT 314 (494)
Q Consensus 235 ~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~ 314 (494)
+|+++|++||+++ +.++++|.|++||+++++++.+++.+++.|+.||++|.||+.+|+|++++|++|++++|+|+.++
T Consensus 419 ~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~ 496 (659)
T PLN03211 419 AALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELI 496 (659)
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 67899999999999999888888899999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhcccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHH
Q psy16346 315 LPAVYHLISYPMLGLQ-SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQL 393 (494)
Q Consensus 315 ~~~if~~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~l 393 (494)
.+++|.+|+|||+|++ ++.+|++|++++++..++++++|+++ |+++||.++|+.++|++++++++
T Consensus 497 ~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i--------------~a~~~~~~~a~~~~~~~~~~~~l 562 (659)
T PLN03211 497 LPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLAL--------------GAAIMDAKKASTIVTVTMLAFVL 562 (659)
T ss_pred HHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 78899999999999999999999999 99999999999999999999999
Q ss_pred hhhcccCCchhhhHhhHhhcHHHHHHHHHHHHhcCCCC----ccccCCCC--CCccCCCCcccCHhHHHhhcCCCcchHH
Q psy16346 394 FGGYLATNIPYWLKWMQYLSMVHYAYQNMQIVEFSEGL----PIQCATQS--KFDACANSTYIPVDAILESQGSSLPLWC 467 (494)
Q Consensus 394 f~Gf~i~~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~----~~~C~~~~--~~~~C~~~~~~~g~~~L~~~~~~~~~w~ 467 (494)
|+||++++||+||+|++|+||++|++|++++|||+++. .++|.... ....|. ..+++.++ +.+.|.
T Consensus 563 fsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~----~~~~~~~~----~~~~~~ 634 (659)
T PLN03211 563 TGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCK----FVEEDVAG----QISPAT 634 (659)
T ss_pred HhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCc----cchhhhhc----ccchHH
Confidence 99999999999999999999999999999999997543 24685321 112342 23444443 346999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16346 468 NTLILIGFLVFFRTLGYIVLRYFRR 492 (494)
Q Consensus 468 ~~~il~~~~~~~~~l~~~~L~~~~~ 492 (494)
|+++|++++++||+++|++|++.++
T Consensus 635 ~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 635 SVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999997663
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3e-77 Score=699.73 Aligned_cols=473 Identities=23% Similarity=0.377 Sum_probs=386.5
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
++++++.+||++++||+||+..+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999966699999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHHhcCCCccCCCcchhHhhhhcccccccCCCc---cccccCCC
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWNKSKAAKKCERRSSWLPKRRGFTQ---AIPKNCNH 160 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~ 160 (494)
+++|||+++++++||++++|++|+++|+|+++++.+||+++|++++...+++|+...+...+++...+. ..++..++
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~ 344 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE 344 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHH
Confidence 999999889999999999999999999999999999999999986555555554433311111100000 00000000
Q ss_pred C--CCCCCCcchhHH-HHhhhhccc-c-c------cCCCC-CCCcCCCCCCccCcHHHHHHHHHHHhHHhh-cchhHHHH
Q psy16346 161 N--TFPMPTLSEEEE-CKQLCLDSQ-S-H------ASSSV-SSSYDDMSWQWPTSFWTQFKVLSQRNFQEA-RPRMLSTL 227 (494)
Q Consensus 161 ~--~~~~~~~~~~~~-~~~~~~~~~-~-~------~~~~~-~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-R~~~~~~~ 227 (494)
. .++.+....+.. ..+...+.. . . +.... .........++..|+|+|+++|++|++++. ||+....+
T Consensus 345 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~ 424 (1394)
T TIGR00956 345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLF 424 (1394)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 0 000000000000 000000000 0 0 00000 000112234678999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhcCCCCChHHHHHHHHHH
Q psy16346 228 NWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVG 307 (494)
Q Consensus 228 r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ay~la~~l~ 307 (494)
|+++.+++|+++|++||+++.++.++++|.|++|+++++.++.++. .+..+..||+||+||+.+++|++++|++|++++
T Consensus 425 r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~-~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~ 503 (1394)
T TIGR00956 425 MVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLL-EIASMYEARPIVEKHRKYALYHPSADAIASIIS 503 (1394)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcceeeeccccccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888864 455566899999999999999999999999999
Q ss_pred HHhHHHHhHhhhhhhhhcccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHH
Q psy16346 308 ELPLTITLPAVYHLISYPMLGLQ-SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISAL 386 (494)
Q Consensus 308 ~lp~~~~~~~if~~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~ 386 (494)
|+|+.++.+++|.+|+|||+|++ ++.+|++|++++++..++++++++++ |+++||.++|+.++++
T Consensus 504 ~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i--------------~a~~~~~~~A~~~~~~ 569 (1394)
T TIGR00956 504 EIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSI--------------GAVTKTLSEAMTPAAI 569 (1394)
T ss_pred HHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhcCCHHHHHHHHHH
Confidence 99999999999999999999996 78899999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCC---C--------CCCccCCCC------
Q psy16346 387 YTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCAT---Q--------SKFDACANS------ 447 (494)
Q Consensus 387 ~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~---~--------~~~~~C~~~------ 447 (494)
+++++++|+||++| +||+||+|++|+||++|+||+++.|||+ +..++|.. . .....|...
T Consensus 570 ~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~-~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~ 648 (1394)
T TIGR00956 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFH-GRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQ 648 (1394)
T ss_pred HHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhc-CCcccccccccCCCCCCCCCccCccccCCCCcCCc
Confidence 99999999999999 9999999999999999999999999998 56789962 1 013457432
Q ss_pred cccCHhHHHhh-cCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16346 448 TYIPVDAILES-QGSS-LPLWCNTLILIGFLVFFRTLGYIVLRYFRR 492 (494)
Q Consensus 448 ~~~~g~~~L~~-~~~~-~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 492 (494)
++++|+++|+. ++++ .++|+|++||++|+++|++++++++++.+.
T Consensus 649 ~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 649 DYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36789999994 6775 789999999999999999999999998763
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-75 Score=683.99 Aligned_cols=461 Identities=21% Similarity=0.338 Sum_probs=376.1
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
++++++.+||++|+||.||+..+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|
T Consensus 312 ~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvi 391 (1470)
T PLN03140 312 TDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVL 391 (1470)
T ss_pred HHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999866799999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHHhcCCCccCCCcchhHhhhhcccccccCCCccccccCCCCCC
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWNKSKAAKKCERRSSWLPKRRGFTQAIPKNCNHNTF 163 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (494)
+++|||+++++++||++++|++|+++|+||++++.+||+++|+.|+...+++|+...+....++..... .+..+ ..+
T Consensus 392 is~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~--~~~~p-~~~ 468 (1470)
T PLN03140 392 MSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWA--DRNKP-YRY 468 (1470)
T ss_pred EEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhh--ccCCc-ccc
Confidence 999999889999999999999999999999999999999999986555555555433311111000000 00000 000
Q ss_pred C--CCCcc--hhHHHH---hhhhccccccCCCCCCCcCCCCCCccCcHHHHHHHHHHHhHHhh-cchhHHHHHHHHHHHH
Q psy16346 164 P--MPTLS--EEEECK---QLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEA-RPRMLSTLNWVQTIGL 235 (494)
Q Consensus 164 ~--~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-R~~~~~~~r~~~~i~~ 235 (494)
. ++... .+.... ....+....++.. ........+|..|+++|++.+++|+++.. ||+..+..|+++.+++
T Consensus 469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ 546 (1470)
T PLN03140 469 ISVSEFAERFKSFHVGMQLENELSVPFDKSQS--HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIV 546 (1470)
T ss_pred CCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhc--ccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0 00000 000000 0000000000000 00011234588999999999999999999 9999999999999999
Q ss_pred HHHHHHHhccCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhHH
Q psy16346 236 GIMAGLLWFQLPRTE---EALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLT 312 (494)
Q Consensus 236 ~ll~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~ 312 (494)
|+++|++||+++.++ .+.+.+.|.+||++++.++.++ ..++.++.||+||+|||+.++|++++|++|++++|+|+.
T Consensus 547 ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~ 625 (1470)
T PLN03140 547 AAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPIS 625 (1470)
T ss_pred HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHH
Confidence 999999999997542 3456778999999888877664 667888899999999999999999999999999999999
Q ss_pred HHhHhhhhhhhhcccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHH
Q psy16346 313 ITLPAVYHLISYPMLGLQ-SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLAT 391 (494)
Q Consensus 313 ~~~~~if~~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~ 391 (494)
++.+++|.+|+|||+||+ ++.+||+|++++++..+++++++.++ ++++||..+|+.+++++++++
T Consensus 626 ~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i--------------~a~~~~~~~A~~~~~~~~l~~ 691 (1470)
T PLN03140 626 IIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLI--------------ASVCRTMIIANTGGALVLLLV 691 (1470)
T ss_pred HHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHcCcHHHHHHHHHHHHHHH
Confidence 999999999999999996 88899999999999999999999999 999999999999999999999
Q ss_pred HHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCCCCccCCCCcccCHhHHHhhcCCC---cchH
Q psy16346 392 QLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACANSTYIPVDAILESQGSS---LPLW 466 (494)
Q Consensus 392 ~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~~~~C~~~~~~~g~~~L~~~~~~---~~~w 466 (494)
++|+||++| +||+||+|++|+||++||+||+++|||.+.. ..|. .|......+|+++|+.+|+. .++|
T Consensus 692 ~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~-~~~~------~~~~~~~~~G~~~L~~~g~~~~~~~~w 764 (1470)
T PLN03140 692 FLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPR-WMNK------MASDNSTRLGTAVLNIFDVFTDKNWYW 764 (1470)
T ss_pred HHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCcc-ccCc------ccCCCCcccHHHHHHhcCcCccccchh
Confidence 999999999 9999999999999999999999999997432 2211 12222356799999999974 3579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16346 467 CNTLILIGFLVFFRTLGYIVLRYFR 491 (494)
Q Consensus 467 ~~~~il~~~~~~~~~l~~~~L~~~~ 491 (494)
+|+++|++|+++|+++++++|++.+
T Consensus 765 ~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 765 IGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999876
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.6e-74 Score=669.73 Aligned_cols=459 Identities=24% Similarity=0.391 Sum_probs=375.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++++|+.+|+..+++|||||||||+||++|+.+|+++||||||+|||+.++..+++.|++++ +.|+||
T Consensus 994 ~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~-~~g~tV 1072 (1470)
T PLN03140 994 FVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1072 (1470)
T ss_pred HHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 5889999999999999999987778999999999999999999999999999999999999999999999998 569999
Q ss_pred EEEecCcchHHHhccCeEEEEeC-CeEeEeCCh----hhHHHHHHhc-CCCccCCCcchhHhhhh-cccccccCCCcccc
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN-GQTAYFGDT----NKVVDFFHNI-GLTWNKSKAAKKCERRS-SWLPKRRGFTQAIP 155 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~-G~~~~~G~~----~~~~~~f~~~-g~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ 155 (494)
|+++|||+.++++.||++++|++ |+++|+|++ +++++||+++ |.+ .++...+++|++ +......+.... .
T Consensus 1073 I~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~--~~p~~~NPAd~~l~v~~~~~~~~~~-~ 1149 (1470)
T PLN03140 1073 VCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVP--KIKEKYNPATWMLEVSSLAAEVKLG-I 1149 (1470)
T ss_pred EEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCC--CCCCCCCchhhhhhhhccccccccc-c
Confidence 99999998788999999999996 899999996 5899999997 564 233333444443 211110000000 0
Q ss_pred ccCCCCCCCCCCcchhHHHHhhhhccccccCCCCCCCcCCCCCCccCcHHHHHHHHHHHhHHhh-cchhHHHHHHHHHHH
Q psy16346 156 KNCNHNTFPMPTLSEEEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEA-RPRMLSTLNWVQTIG 234 (494)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-R~~~~~~~r~~~~i~ 234 (494)
...+ .++.+....+.... ......+ ...........+++.|+|+|+++|++|++++. |||.+...|+++.++
T Consensus 1150 d~~~--~~~~s~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~ 1222 (1470)
T PLN03140 1150 DFAE--HYKSSSLYQRNKAL--VKELSTP---PPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLA 1222 (1470)
T ss_pred hHHH--HHhccHHHHHHHHH--HHHhccC---CCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHH
Confidence 0000 00000000000000 0000000 00000111234688999999999999999999 999999999999999
Q ss_pred HHHHHHHHhccCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhH
Q psy16346 235 LGIMAGLLWFQLPRTE---EALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPL 311 (494)
Q Consensus 235 ~~ll~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~ 311 (494)
+|+++|++||+++++. .+++++.|++|+++++.++..+...++.|..||++|+|||++|+|++++|++|++++|+|+
T Consensus 1223 ~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~ 1302 (1470)
T PLN03140 1223 AALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPY 1302 (1470)
T ss_pred HHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999765 4677889999999998888777778889999999999999999999999999999999999
Q ss_pred HHHhHhhhhhhhhcccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHH
Q psy16346 312 TITLPAVYHLISYPMLGLQ-SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLA 390 (494)
Q Consensus 312 ~~~~~~if~~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~ 390 (494)
.++.+++|.+|+|||+||+ ++..|++|++++++..++++++|+++ ++++||.++|..+++++.++
T Consensus 1303 ~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~--------------~a~~p~~~~A~~~~~~~~~~ 1368 (1470)
T PLN03140 1303 VLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMT--------------VSLTPNQQVAAIFAAAFYGL 1368 (1470)
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHCCcHHHHHHHHHHHHHH
Confidence 9999999999999999996 78899999999999999999999999 99999999999999999999
Q ss_pred HHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCCCCccCCCC-cccCHhHHH-hhcCCC-cch
Q psy16346 391 TQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACANS-TYIPVDAIL-ESQGSS-LPL 465 (494)
Q Consensus 391 ~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~~~~C~~~-~~~~g~~~L-~~~~~~-~~~ 465 (494)
+++|+||++| +||+||+|++|+||++|++++++.|||++ .+.+|. |+.. ...++++++ +.+|++ .++
T Consensus 1369 ~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~-~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~ 1440 (1470)
T PLN03140 1369 FNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGD-VEDTIK-------VPGGAPDPTIKWYIQDHYGYDPDFM 1440 (1470)
T ss_pred HHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCC-CCCccc-------CCCCCCCCcHHHHHHHhcCcCcccc
Confidence 9999999999 99999999999999999999999999974 444553 2210 123577774 567986 779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy16346 466 WCNTLILIGFLVFFRTLGYIVLRYFRRPG 494 (494)
Q Consensus 466 w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 494 (494)
|++++++++|+++|++++++++++.|.+|
T Consensus 1441 ~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1441 GPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999998876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.1e-73 Score=665.94 Aligned_cols=466 Identities=23% Similarity=0.398 Sum_probs=375.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCC-EeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPA-LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~-~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||++++|+.+|+. ..+||||||||++||++|+.+|+ +++|||||+|||+.++..+++.|++++ ++|+
T Consensus 876 ~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la-~~g~ 953 (1394)
T TIGR00956 876 EYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA-DHGQ 953 (1394)
T ss_pred HHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHH-HcCC
Confidence 36889999999999999999864 34899999999999999999997 999999999999999999999999998 5699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCC-eEeEeCCh----hhHHHHHHhcCC-CccCCCcchhHhhhhcccccccCCCccc
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNG-QTAYFGDT----NKVVDFFHNIGL-TWNKSKAAKKCERRSSWLPKRRGFTQAI 154 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G-~~~~~G~~----~~~~~~f~~~g~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 154 (494)
|||+++|||+..+++.||++++|++| +++|.|++ +++++||+..|+ +|+...+++|+.-++ ..........
T Consensus 954 tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldv--i~~~~~~~~~- 1030 (1394)
T TIGR00956 954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEV--IGAAPGAHAN- 1030 (1394)
T ss_pred EEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHH--hhcccccchh-
Confidence 99999999997788999999999987 99999997 578999999996 655444554443222 1110000000
Q ss_pred cccCCCCCCCCCCcchhHH-HHhhhhccccccCCCCCCCcCCCCCCccCcHHHHHHHHHHHhHHhh-cchhHHHHHHHHH
Q psy16346 155 PKNCNHNTFPMPTLSEEEE-CKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEA-RPRMLSTLNWVQT 232 (494)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-R~~~~~~~r~~~~ 232 (494)
....+ .++.+....+.. ..+..... . .............++++|+++|+++|++|++++. ||+.+...|++++
T Consensus 1031 ~~~~~--~~~~s~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~ 1105 (1394)
T TIGR00956 1031 QDYHE--VWRNSSEYQAVKNELDRLEAE-L--SKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLT 1105 (1394)
T ss_pred ccHHH--HHhcCHHHHHHHHHHHHhhcc-c--ccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 00000 000000000000 00000000 0 0000000111224678999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHhhcCCCCChHHHHHHHHHHHHhH
Q psy16346 233 IGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVI-NKERLSGAYRLSAYYLAKMVGELPL 311 (494)
Q Consensus 233 i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~-~rE~~~~~Y~~~ay~la~~l~~lp~ 311 (494)
+++|+++|++||++++++.+++++.|.+|+.+++..+. +...++.|+.||.++ +||+.+|+|++++|++|++++|+|+
T Consensus 1106 i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~ 1184 (1394)
T TIGR00956 1106 IFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPY 1184 (1394)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776554 456778898899886 8999999999999999999999999
Q ss_pred HHHhHhhhhhhhhcccCCC-Chh-------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHH
Q psy16346 312 TITLPAVYHLISYPMLGLQ-SPT-------VFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITI 383 (494)
Q Consensus 312 ~~~~~~if~~i~Y~m~gl~-~~~-------~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~ 383 (494)
.++.+++|.+|+|||+|++ ++. +|++|++++++..++++++|+++ ++++||.++|+.+
T Consensus 1185 ~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~--------------~~~~~~~~~a~~~ 1250 (1394)
T TIGR00956 1185 NLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMV--------------ISFNPNADNAAVL 1250 (1394)
T ss_pred HHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHH--------------HHHCCcHHHHHHH
Confidence 9999999999999999995 443 39999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCC-----------------------
Q psy16346 384 SALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQ----------------------- 438 (494)
Q Consensus 384 ~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~----------------------- 438 (494)
++++.+++++|+||+++ +||.||+|++|+||++|++++++.|||+ +.+++|.+.
T Consensus 1251 ~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~-~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~ 1329 (1394)
T TIGR00956 1251 ASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLA-DVPVTCKVKELLTFNPPSGQTCGEYMKPYLEN 1329 (1394)
T ss_pred HHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcC-CCeeecCccccceecCCCCCCHHHHHHHHHhh
Confidence 99999999999999999 9999999999999999999999999998 567888652
Q ss_pred --------CCCccCCCCcccCHhHHHhhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhh-ccCC
Q psy16346 439 --------SKFDACANSTYIPVDAILESQGSS-LPLWCNTLILIGFLVFFRTLGYIVLRYF-RRPG 494 (494)
Q Consensus 439 --------~~~~~C~~~~~~~g~~~L~~~~~~-~~~w~~~~il~~~~~~~~~l~~~~L~~~-~~~~ 494 (494)
+....|..|++.+|+++|+.++++ .+.|+|++++++|++++ ++++++|++. |+||
T Consensus 1330 ~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1330 AGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVPK 1394 (1394)
T ss_pred CCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcCC
Confidence 011246666688999999999986 78999999999999999 7777777654 5554
No 8
>KOG0065|consensus
Probab=100.00 E-value=9.6e-72 Score=616.60 Aligned_cols=467 Identities=24% Similarity=0.435 Sum_probs=386.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.+|.+++.+||++|+||+|||...||+||||||||++|.+++.+|+++++||+|+|||+.++.++++.+|++++..+.|+
T Consensus 235 ~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~ 314 (1391)
T KOG0065|consen 235 MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATA 314 (1391)
T ss_pred HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHHhcCCCccCCCcchhHhhhhcccccccCCCccccccCCCCC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWNKSKAAKKCERRSSWLPKRRGFTQAIPKNCNHNT 162 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (494)
++++|||+++++++||+|++|.+|+++|+||++++++||+++|+.|+.....+|+...+.. +..+..... .+...
T Consensus 315 ~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts--~k~~~~~~~---~~~~~ 389 (1391)
T KOG0065|consen 315 LVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTS--KKDQEQYWN---KRSKP 389 (1391)
T ss_pred EEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhc--Ccccccccc---ccCCC
Confidence 9999999999999999999999999999999999999999999987666555555544411 111000000 00000
Q ss_pred CCC----CCcc-----hhHHHHhhhhccccccCCCCCCCcCCCCCCccCcHHHHHHHHHHHhHHhh-cchhHHHHHHHHH
Q psy16346 163 FPM----PTLS-----EEEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEA-RPRMLSTLNWVQT 232 (494)
Q Consensus 163 ~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-R~~~~~~~r~~~~ 232 (494)
+.. +... ++-.......+...+.. ..........+|..++|.|++.+++|.+... ||..++..+..+.
T Consensus 390 ~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~--k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~ 467 (1391)
T KOG0065|consen 390 YPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKS--KKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQL 467 (1391)
T ss_pred cccCCHHHHHHHHhcchhhHHHHHHhcchhhhh--hccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHH
Confidence 000 0000 00000000001100000 0111234456789999999999999999999 8999988999999
Q ss_pred HHHHHHHHHHhccCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhH
Q psy16346 233 IGLGIMAGLLWFQLP-RTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPL 311 (494)
Q Consensus 233 i~~~ll~G~~f~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~ 311 (494)
+++|+++|++|++++ .+..+.+.+.|++||.+++.++.++ ..+....+.||||+|||...+|++|||.++..+.++|.
T Consensus 468 ~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~l-aEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~ 546 (1391)
T KOG0065|consen 468 VIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGL-AEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPS 546 (1391)
T ss_pred HHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhH-HHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcH
Confidence 999999999999999 7778899999999999999888776 44555557999999999999999999999999999999
Q ss_pred HHHhHhhhhhhhhcccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHH
Q psy16346 312 TITLPAVYHLISYPMLGLQ-SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLA 390 (494)
Q Consensus 312 ~~~~~~if~~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~ 390 (494)
.++.+++|.+|+||++|+. ++++||.+++++++.++++.++..++ ++++++...|+.++++.++.
T Consensus 547 ~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~i--------------a~l~~t~~~An~~g~~~~L~ 612 (1391)
T KOG0065|consen 547 SFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFI--------------ASLSRTLSIANLIGGILLLV 612 (1391)
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhcchHHHHhhHhHHHHHH
Confidence 9999999999999999995 89999999999999999999999999 99999999999999999999
Q ss_pred HHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCC--------CCccCCCCcccCHhHHHhhc-
Q psy16346 391 TQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQS--------KFDACANSTYIPVDAILESQ- 459 (494)
Q Consensus 391 ~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~--------~~~~C~~~~~~~g~~~L~~~- 459 (494)
..+++||+|| +||+||+|++|+||+.|++|++++|||+ +..+.|.+.. .+..|...+..+|+++++..
T Consensus 613 i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~-~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~ 691 (1391)
T KOG0065|consen 613 LFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFH-GRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRD 691 (1391)
T ss_pred HHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhh-cccCCCCCCCCcccccccccccchhhccccCceEEeccc
Confidence 9999999999 9999999999999999999999999998 5789998331 13466544444555555443
Q ss_pred ------CCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16346 460 ------GSS-LPLWCNTLILIGFLVFFRTLGYIVLRYFRR 492 (494)
Q Consensus 460 ------~~~-~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 492 (494)
+++ .++|+|++|++||.++|.++..+++.+.+-
T Consensus 692 ~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p 731 (1391)
T KOG0065|consen 692 YLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKP 731 (1391)
T ss_pred ccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCc
Confidence 332 579999999999999999999999988764
No 9
>KOG0065|consensus
Probab=100.00 E-value=2.8e-69 Score=597.03 Aligned_cols=410 Identities=26% Similarity=0.449 Sum_probs=338.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCC-CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNP-ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p-~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+.||++++.|+|++++|.+||+.. +|||.+||||++||+||+.+| .+++|||||||||++++..+++.+|+++ ++|+
T Consensus 904 ~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla-~tGq 981 (1391)
T KOG0065|consen 904 EYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA-DTGQ 981 (1391)
T ss_pred HHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH-hcCC
Confidence 579999999999999999999976 999999999999999999999 8999999999999999999999999999 5899
Q ss_pred EEEEEecCcchHHHhccCeEEEEe-CCeEeEeCChhh----HHHHHHhcC-CCccCCCcchhHhhhh-cccccccCCCcc
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLC-NGQTAYFGDTNK----VVDFFHNIG-LTWNKSKAAKKCERRS-SWLPKRRGFTQA 153 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~-~G~~~~~G~~~~----~~~~f~~~g-~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 153 (494)
||+||+|||+.++++.||++++|+ +|+++|.|+..+ +++||+++| ..| .+.+++++.+ +......+..
T Consensus 982 tIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~---~~~~NPA~~mLevi~~~~~~~-- 1056 (1391)
T KOG0065|consen 982 TILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKC---ISDENPAEWMLEVIGAGAEAS-- 1056 (1391)
T ss_pred eEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccC---CCCCChHHHHHhhcccccccc--
Confidence 999999999999999999999998 799999999854 667999987 443 3333555554 3221111100
Q ss_pred ccccCCCCCCCCCCcchhHHHHhhhhccccccCCCCCCCcCCCCCCccCcHHHHHHHHHHHhHHhh-cchhHHHHHHHHH
Q psy16346 154 IPKNCNHNTFPMPTLSEEEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEA-RPRMLSTLNWVQT 232 (494)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~-R~~~~~~~r~~~~ 232 (494)
......+.....+.. ++.++.-.......+. .......+.+++.|+|.|++.+++|++..+ |+|.+..+|++.+
T Consensus 1057 ~~~D~a~~w~~S~e~-k~~~e~v~~l~~~~~~----~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~ 1131 (1391)
T KOG0065|consen 1057 LSVDFAEIWKNSEEY-KRNKELVKELSQPPPG----FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALT 1131 (1391)
T ss_pred cCccHHHHHhccHHH-HHHHHHHHHHhcCCcc----CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 000000000000000 0111111111111111 011123355789999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhHH
Q psy16346 233 IGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLT 312 (494)
Q Consensus 233 i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~ 312 (494)
++.||++|+.||+.+++..++|+.+|.+|+.+++..........+.+..||.+++||+++|+|++.+|++|++++|+|+.
T Consensus 1132 i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~ 1211 (1391)
T KOG0065|consen 1132 IVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYN 1211 (1391)
T ss_pred HHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876544333345566789999999999999999999999999999999
Q ss_pred HHhHhhhhhhhhcccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHH
Q psy16346 313 ITLPAVYHLISYPMLGLQ-SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLAT 391 (494)
Q Consensus 313 ~~~~~if~~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~ 391 (494)
++.+++|.+++|+|+||. ++..|++||+..++..++...+|+++ .+++||.++|..+.+++...+
T Consensus 1212 l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~--------------~s~tPn~~~Aav~~s~~~s~~ 1277 (1391)
T KOG0065|consen 1212 LLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMML--------------VSLTPNLQTAAVIASLFFSFW 1277 (1391)
T ss_pred HHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999996 77888999999999999999999999 899999999999999999999
Q ss_pred HHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCC
Q psy16346 392 QLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQ 438 (494)
Q Consensus 392 ~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~ 438 (494)
.+|+|+++| .||.||+|+||+||+.|..++++..+++ +.+..|...
T Consensus 1278 ~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~-d~~v~c~~~ 1325 (1391)
T KOG0065|consen 1278 NLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLG-DVEVTCEDS 1325 (1391)
T ss_pred HHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhC-CCceeeecC
Confidence 999999999 9999999999999999999999999998 677888654
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.2e-26 Score=220.81 Aligned_cols=111 Identities=29% Similarity=0.448 Sum_probs=105.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+||.++++.+||++.+|. ++.+|||||||||+|||||+.+|++|++|||||.|||.+...|++.|+++.++.|.|
T Consensus 120 ~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglT 194 (339)
T COG1135 120 QRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLT 194 (339)
T ss_pred HHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCE
Confidence 689999999999988774 688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++||++ +-+.++|||+.+|++|+++..|+..++.
T Consensus 195 IvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 195 IVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred EEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999996 4889999999999999999999987764
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.4e-25 Score=207.15 Aligned_cols=110 Identities=26% Similarity=0.430 Sum_probs=102.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++..++|+++||.+.+|. ++.+|||||||||+|||||+.+|+++++|||||.|||+...++.+.++++| +.|.|
T Consensus 115 ~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA-~eGmT 188 (240)
T COG1126 115 EKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMT 188 (240)
T ss_pred HHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH-HcCCe
Confidence 467789999999998885 688999999999999999999999999999999999999999999999999 67999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
.+++||+.. ...+.+|||+.|++|+++..|+|+++.
T Consensus 189 MivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 189 MIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred EEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 999999965 788999999999999999999987764
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=8.5e-25 Score=211.10 Aligned_cols=111 Identities=31% Similarity=0.456 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.+++.|+.+|+++.+++. ..+||||||||+.||+||+.+|++++||||||.||...+.++++.++++++++|+||
T Consensus 118 ~v~~aL~~~~~~~la~r~-----~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tv 192 (258)
T COG1120 118 IVEEALELLGLEHLADRP-----VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192 (258)
T ss_pred HHHHHHHHhCcHHHhcCc-----ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEE
Confidence 588889999999999864 567999999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++||++ ...++||++++|++|++++.|+|+++++
T Consensus 193 v~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 193 VMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 99999987 7899999999999999999999988763
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=2.3e-24 Score=215.55 Aligned_cols=115 Identities=29% Similarity=0.521 Sum_probs=104.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+.+++ ++++||+|||||++||+||+++|+++||||||+||||.++.++.+.|++++++.|+|
T Consensus 115 ~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~t 189 (293)
T COG1131 115 ERIEELLELFGLEDKANK-----KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189 (293)
T ss_pred HHHHHHHHHcCCchhhCc-----chhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcE
Confidence 478999999999985543 567899999999999999999999999999999999999999999999999654489
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~ 122 (494)
|++|||++. ++.++||+|++|++|++++.|+++++...+.
T Consensus 190 vlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 190 ILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred EEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 999999976 8899999999999999999999998776654
No 14
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.9e-24 Score=207.60 Aligned_cols=110 Identities=32% Similarity=0.532 Sum_probs=102.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.+++.|+.+|+.+.+|..+| +|||||+|||-|||||+++|++++|||||+|+|+.++..+.++|++++++ |+|
T Consensus 118 ~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~t 191 (254)
T COG1121 118 EKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKT 191 (254)
T ss_pred HHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCE
Confidence 579999999999999998765 59999999999999999999999999999999999999999999999865 999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|++++||+. .+.+.||+++.| ++++++.|+++++.+
T Consensus 192 Il~vtHDL~-~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 192 VLMVTHDLG-LVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred EEEEeCCcH-HhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999986 789999999999 678999999988764
No 15
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.9e-24 Score=197.12 Aligned_cols=111 Identities=25% Similarity=0.461 Sum_probs=104.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++.+.|+|.++.|+++| ++|.|+||||+|||||+++|+++++||||||||..+...+.+.++++. +.|++
T Consensus 112 ari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~ 185 (245)
T COG4555 112 ARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRA 185 (245)
T ss_pred HHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcE
Confidence 578999999999999998776 589999999999999999999999999999999999999999999985 67999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|.. +++..+||+++++++|++++.|+++++..
T Consensus 186 viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 186 VIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999996 58999999999999999999999987764
No 16
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=3.8e-24 Score=200.68 Aligned_cols=110 Identities=26% Similarity=0.456 Sum_probs=100.7
Q ss_pred HHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 4 VDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 4 v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+..-|+..||... ++ .++.+||||||||+++|||++.+|+++++||||+||||.++..+.++|+++.++.|.|+
T Consensus 125 v~~KL~~VGL~~~~~~-----~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~ 199 (263)
T COG1127 125 VLMKLELVGLRGAAAD-----LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTV 199 (263)
T ss_pred HHHHHHhcCCChhhhh-----hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEE
Confidence 4445777888765 44 57899999999999999999999999999999999999999999999999998899999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+++|||.. +++..+||+.+|.+|+++..|+++++.+
T Consensus 200 i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 200 IMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999965 7999999999999999999999998874
No 17
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=7.1e-24 Score=199.85 Aligned_cols=112 Identities=22% Similarity=0.475 Sum_probs=105.2
Q ss_pred hHHHHHHHHcCCcc--cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 2 TYVDHIINVLDLAN--CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 2 ~~v~~~l~~l~L~~--~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
++++++|+.+||++ +++ +++.+|||||+|||.+||||+.+|+++++|||++.|||.++.++.+.++++.++.|
T Consensus 112 ~r~~ELl~lvgL~p~~~~~-----RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~ 186 (309)
T COG1125 112 KRADELLDLVGLDPSEYAD-----RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG 186 (309)
T ss_pred HHHHHHHHHhCCCHHHHhh-----cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhC
Confidence 58999999999975 455 57899999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|||++|||. +|.++++||+.+|++|+++..|+|++++.
T Consensus 187 kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 187 KTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred CEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 9999999996 58999999999999999999999998874
No 18
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.3e-24 Score=205.03 Aligned_cols=113 Identities=30% Similarity=0.502 Sum_probs=104.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+.++. .+..|||||||||+||.+|+.+|++++|||||+|||+..+.++++.++++.++.|+|
T Consensus 117 ~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~t 191 (235)
T COG1122 117 ERVAEALELVGLEELLDR-----PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKT 191 (235)
T ss_pred HHHHHHHHHcCchhhccC-----CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCe
Confidence 579999999999998774 578899999999999999999999999999999999999999999999998666899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
+|++||+. +.+...+||+++|++|+++++|++.++.+.
T Consensus 192 ii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 192 IIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999996 488999999999999999999998877653
No 19
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.6e-23 Score=197.18 Aligned_cols=113 Identities=27% Similarity=0.472 Sum_probs=103.4
Q ss_pred hHHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++.++++.+||.+- .+ +++.+||||||||++|||||+.+|++|++|||||.||+..+.+|++.+.++.++.|.
T Consensus 119 ~~i~~~L~~VgL~~~~l~-----R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~l 193 (252)
T COG1124 119 QRIAELLDQVGLPPSFLD-----RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGL 193 (252)
T ss_pred HHHHHHHHHcCCCHHHHh-----cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCc
Confidence 357889999999654 33 468899999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
|.|+++||.+ -+..+|||+++|++|++++.++.+++.+.
T Consensus 194 t~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 194 TYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred eEEEEeCcHH-HHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999965 88999999999999999999999988753
No 20
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=3.3e-23 Score=186.12 Aligned_cols=111 Identities=25% Similarity=0.443 Sum_probs=104.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++.++...||..+.+. .+.+|||||||||++||+|+.+-+|++||||+|.|||.-+.++...+.+++.+++.|
T Consensus 108 ~~v~~aa~~vGl~~~~~R-----LP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~T 182 (231)
T COG3840 108 EKVEAAAAQVGLAGFLKR-----LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMT 182 (231)
T ss_pred HHHHHHHHHhChhhHhhh-----CccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCE
Confidence 578999999999988775 567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
++++||||+ ++.++.|+++++++|||.+.|+.++..
T Consensus 183 llmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 183 LLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred EEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999986 889999999999999999999987765
No 21
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=3.9e-23 Score=195.81 Aligned_cols=101 Identities=31% Similarity=0.557 Sum_probs=92.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..+. .++.+|||||||||+|||||+.+|++++.||||..||+.++..+++.+++++++.|+|
T Consensus 120 ~~~~~l~~~lgl~~~~~~----~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~t 195 (226)
T COG1136 120 RAAEELLEVLGLEDRLLK----KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKT 195 (226)
T ss_pred HHHHHHHHhcCChhhhcc----CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCE
Confidence 467888999999866552 2578999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
+|++||+| ++...|||++.+.+|++
T Consensus 196 ii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 196 IIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred EEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999997 67899999999999983
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.89 E-value=5.1e-23 Score=209.71 Aligned_cols=111 Identities=27% Similarity=0.456 Sum_probs=102.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++++.+||++..|. ++++|||||||||+|||||+.+|++++|||||++||+.++..+++.|++++++.|.|
T Consensus 119 ~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~t 193 (343)
T TIGR02314 119 RKVTELLALVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193 (343)
T ss_pred HHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 357889999999887775 467899999999999999999999999999999999999999999999998666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. .+.++||++++|++|++++.|+++++.
T Consensus 194 iiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 194 ILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999974 788999999999999999999998774
No 23
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.7e-23 Score=202.83 Aligned_cols=114 Identities=21% Similarity=0.390 Sum_probs=103.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++|+.+||.+-.. +-+.++.+|||||||||.||.+|+.+|+++|.||||++||...+.+|++.|+++.++.|.+
T Consensus 129 ~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~a 206 (316)
T COG0444 129 ERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206 (316)
T ss_pred HHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCE
Confidence 36788899999975322 3345789999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+|++|||.. -+.++||||.||..|++++.|+++++.
T Consensus 207 iilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 207 LILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 999999975 899999999999999999999998765
No 24
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=4.9e-23 Score=187.74 Aligned_cols=110 Identities=26% Similarity=0.510 Sum_probs=103.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++|++|.+.|++|+ +...||||||||+.|||+|+.+|++++||||++|.||.+..+|.++++++. +.|..|
T Consensus 119 ~l~~LL~ef~i~hlr~~-----~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGv 192 (243)
T COG1137 119 ELDALLEEFHITHLRDS-----KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGV 192 (243)
T ss_pred HHHHHHHHhchHHHhcC-----cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceE
Confidence 47899999999999986 456799999999999999999999999999999999999999999999997 679999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
++|-|+.. |...+|||..++++|+++.+|+++++.+
T Consensus 193 LITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 193 LITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred EEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999976 8999999999999999999999999875
No 25
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4e-23 Score=193.32 Aligned_cols=112 Identities=27% Similarity=0.416 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++-+.|+.+|+.+.+.++ ...|||||+|||+|||+|+.+|++++.|||++.|||.++..+|+.|++++++.|.|+
T Consensus 127 ~Al~aLervgi~~~A~qr-----a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tv 201 (258)
T COG3638 127 QALDALERVGILDKAYQR-----ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITV 201 (258)
T ss_pred HHHHHHHHcCcHHHHHHH-----hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEE
Confidence 456789999999888865 456999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
|++.||.. -..++|||++-|++|+++|.||++++-+.
T Consensus 202 i~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 202 IVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred EEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 99999964 78899999999999999999999886543
No 26
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.8e-23 Score=197.41 Aligned_cols=113 Identities=26% Similarity=0.482 Sum_probs=106.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.+|+++|+...|++.++ .++.+|||||||||++||||+.+|++|+||||++.||..-+.++-+.|+++.++.|.|
T Consensus 116 ~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~t 190 (345)
T COG1118 116 ARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190 (345)
T ss_pred HHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCce
Confidence 57899999999998777 5789999999999999999999999999999999999999999999999998777999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
++++|||+. ++++++|||++|++|+|...|+++++.+.
T Consensus 191 tvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 191 TVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred EEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 999999975 89999999999999999999999998753
No 27
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=1e-22 Score=213.32 Aligned_cols=115 Identities=23% Similarity=0.409 Sum_probs=107.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++++..||.+-... +.++.+|||||||||.||+||+.+|++|++||||++||..++.+|++.|+++.++.|.+
T Consensus 131 ~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a 207 (539)
T COG1123 131 KRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMA 207 (539)
T ss_pred HHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcE
Confidence 467889999999876554 56899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
+|++||++. -+.+++||+++|.+|++++.|+++++.+-
T Consensus 208 ~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 208 VLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred EEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence 999999985 88999999999999999999999998853
No 28
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=1.5e-22 Score=203.91 Aligned_cols=111 Identities=28% Similarity=0.487 Sum_probs=102.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+.+++.+ ++||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++ ++|+|
T Consensus 117 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~t 190 (306)
T PRK13537 117 ALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKT 190 (306)
T ss_pred HHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCE
Confidence 35678899999988888654 5799999999999999999999999999999999999999999999997 56999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++.++|||+++|++|++++.|+++++.+
T Consensus 191 ill~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 191 ILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999975 8899999999999999999999988864
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=206.93 Aligned_cols=112 Identities=22% Similarity=0.417 Sum_probs=103.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+++|||||||||+|||+|+.+|++++|||||++||+..+..+.+.|+++.++.|.|
T Consensus 113 ~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 187 (356)
T PRK11650 113 ERVAEAARILELEPLLDR-----KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTT 187 (356)
T ss_pred HHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 357889999999888775 467899999999999999999999999999999999999999999999998666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++|++++|++|+++..|+++++.+
T Consensus 188 ii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 188 SLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 999999975 7899999999999999999999988753
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2e-22 Score=195.58 Aligned_cols=110 Identities=27% Similarity=0.429 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 116 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv 190 (235)
T cd03261 116 IVLEKLEAVGLRGAEDL-----YPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTS 190 (235)
T ss_pred HHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 46788999999876665 4567999999999999999999999999999999999999999999999975468999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 191 i~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 191 IMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred EEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 99999975 788899999999999999999987654
No 31
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.88 E-value=2.1e-22 Score=206.75 Aligned_cols=112 Identities=24% Similarity=0.412 Sum_probs=102.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc-Cc
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE-GK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~-g~ 80 (494)
++++++++.+||++..|+ .+++|||||||||+|||+|+.+|++++|||||+|||+..+.++.+.|+++.++. |.
T Consensus 116 ~~v~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~ 190 (362)
T TIGR03258 116 ERVADALKLVGLGDAAAH-----LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190 (362)
T ss_pred HHHHHHHHhcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCC
Confidence 468899999999988775 467899999999999999999999999999999999999999999999998654 89
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 191 til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 191 TILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999975 7899999999999999999999988764
No 32
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=2.1e-22 Score=206.44 Aligned_cols=112 Identities=25% Similarity=0.496 Sum_probs=103.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+ .+++|||||||||+|||+|+.+|++++||||+++||...+..+.+.|+++.++.|.|
T Consensus 113 ~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~t 187 (353)
T TIGR03265 113 ERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187 (353)
T ss_pred HHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 468899999999988775 567899999999999999999999999999999999999999999999998667999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|++++.|+++++.+
T Consensus 188 vi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 188 TIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999975 8899999999999999999999988764
No 33
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.88 E-value=2.9e-22 Score=201.79 Aligned_cols=111 Identities=23% Similarity=0.458 Sum_probs=101.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 104 ~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~tv 177 (302)
T TIGR01188 104 RAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK-EEGVTI 177 (302)
T ss_pred HHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 578899999998877764 46799999999999999999999999999999999999999999999997 459999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
|+++|++. ++.+.||++++|++|++++.|+++++.+-
T Consensus 178 i~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 178 LLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999975 78899999999999999999999887653
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.5e-22 Score=189.35 Aligned_cols=113 Identities=24% Similarity=0.421 Sum_probs=105.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++|+.+||.+.+|+.. ++||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|+++.++.|.|
T Consensus 128 e~A~~~Le~vgL~~~a~~~A-----~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~t 202 (250)
T COG0411 128 ERARELLEFVGLGELADRPA-----GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVT 202 (250)
T ss_pred HHHHHHHHHcCCchhhcchh-----hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 46788999999999999765 4599999999999999999999999999999999999999999999998667899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
|+++.|+.. .++++||||++|+.|+++.+|+|+++.+.
T Consensus 203 illIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 203 ILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred EEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence 999999965 89999999999999999999999998753
No 35
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.1e-22 Score=204.89 Aligned_cols=111 Identities=23% Similarity=0.452 Sum_probs=102.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+++|||||||||+|||+|+.+|++++||||++|||+..+.++.+.|+++.++.|+|
T Consensus 115 ~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 189 (351)
T PRK11432 115 QRVKEALELVDLAGFEDR-----YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNIT 189 (351)
T ss_pred HHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 467889999999887764 567899999999999999999999999999999999999999999999998667999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+|++||++. ++.+++|++++|++|+++..|+++++.
T Consensus 190 ii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 190 SLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999975 789999999999999999999998875
No 36
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.5e-22 Score=193.77 Aligned_cols=110 Identities=29% Similarity=0.438 Sum_probs=99.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 124 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 198 (241)
T cd03256 124 RALAALERVGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITV 198 (241)
T ss_pred HHHHHHHHcCChhhhCC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 46778999999876664 4578999999999999999999999999999999999999999999999985568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+++|++++|++|++++.|+++++.
T Consensus 199 i~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 199 IVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999975 788899999999999999999988764
No 37
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=3.7e-22 Score=204.60 Aligned_cols=112 Identities=26% Similarity=0.438 Sum_probs=102.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+ ++.+|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.++.|.|
T Consensus 115 ~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~t 189 (353)
T PRK10851 115 AKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFT 189 (353)
T ss_pred HHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 367889999999887775 567899999999999999999999999999999999999999999999998666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++|++++|++|++++.|+++++.+
T Consensus 190 ii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 190 SVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999975 7899999999999999999999988753
No 38
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.4e-22 Score=197.33 Aligned_cols=112 Identities=24% Similarity=0.488 Sum_probs=100.6
Q ss_pred hHHHHHHHHcCCc--ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 2 TYVDHIINVLDLA--NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 2 ~~v~~~l~~l~L~--~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
++++++++.+||. +..|+ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|
T Consensus 121 ~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g 195 (287)
T PRK13637 121 NRVKRAMNIVGLDYEDYKDK-----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYN 195 (287)
T ss_pred HHHHHHHHHcCCCchhhccC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC
Confidence 3578899999996 45554 5678999999999999999999999999999999999999999999999986569
Q ss_pred cEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|||+++|++. ++.+.|||+++|++|++++.|+++++.+
T Consensus 196 ~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 196 MTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999975 7788999999999999999999988753
No 39
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.9e-22 Score=198.36 Aligned_cols=111 Identities=24% Similarity=0.422 Sum_probs=100.5
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||. +..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.
T Consensus 123 ~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~ 197 (290)
T PRK13634 123 QKAREMIELVGLPEELLAR-----SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGL 197 (290)
T ss_pred HHHHHHHHHCCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3678899999996 45564 46789999999999999999999999999999999999999999999999865699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. ++.+.+||+++|++|++++.|+++++.
T Consensus 198 tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 198 TTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999975 788999999999999999999988764
No 40
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=6.4e-22 Score=201.80 Aligned_cols=111 Identities=30% Similarity=0.498 Sum_probs=101.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++.+ ++||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 152 ~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~-~~g~ti 225 (340)
T PRK13536 152 VIPSLLEFARLESKADARV-----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTI 225 (340)
T ss_pred HHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 4678899999988877654 5799999999999999999999999999999999999999999999997 469999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
|+++|++. ++.++||++++|++|++++.|+++++.+.
T Consensus 226 lisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 226 LLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999975 88999999999999999999999988653
No 41
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.9e-22 Score=201.24 Aligned_cols=115 Identities=23% Similarity=0.358 Sum_probs=101.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+..+ .-+..+.+|||||||||+||++|+.+|+++++||||+|||+.++.++++.|+++.++.|.|
T Consensus 129 ~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~t 206 (326)
T PRK11022 129 QRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMA 206 (326)
T ss_pred HHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 35788999999964221 1123578999999999999999999999999999999999999999999999998667999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. .+.+++||+++|++|++++.|+++++.+
T Consensus 207 il~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 207 LVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 999999975 6788999999999999999999988753
No 42
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.8e-22 Score=202.77 Aligned_cols=111 Identities=28% Similarity=0.445 Sum_probs=101.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 119 ~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~t 193 (343)
T PRK11153 119 ARVTELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLT 193 (343)
T ss_pred HHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 357789999999877765 457899999999999999999999999999999999999999999999998666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 194 iilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 194 IVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999975 788899999999999999999988774
No 43
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=5.6e-22 Score=204.41 Aligned_cols=112 Identities=25% Similarity=0.424 Sum_probs=103.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ ++.+|||||||||+|||+|+.+|++++||||++|||...+..+.+.|+++.++.|.|
T Consensus 123 ~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~t 197 (375)
T PRK09452 123 PRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGIT 197 (375)
T ss_pred HHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCE
Confidence 367889999999988775 467899999999999999999999999999999999999999999999998767999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++|++++|++|+++..|+++++.+
T Consensus 198 iI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 198 FVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999975 7899999999999999999999988753
No 44
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7e-22 Score=201.17 Aligned_cols=113 Identities=20% Similarity=0.332 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++.++++.+||.+..+ ..+..+.+|||||||||+||++|+.+|+++++||||+|||+.++.++.+.|+++.++.|.|+
T Consensus 135 ~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~ti 212 (330)
T PRK15093 135 RAIELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTI 212 (330)
T ss_pred HHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 5778899999975322 11245789999999999999999999999999999999999999999999999986569999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. .+.+++||+++|++|++++.|+++++.
T Consensus 213 i~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 213 LLISHDLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999975 788999999999999999999988765
No 45
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=6.8e-22 Score=192.81 Aligned_cols=109 Identities=28% Similarity=0.437 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+
T Consensus 125 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 199 (243)
T TIGR02315 125 RALSALERVGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITV 199 (243)
T ss_pred HHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 56788999999876664 4568999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 200 ii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 200 IINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999975 67889999999999999999998765
No 46
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=6.9e-22 Score=192.40 Aligned_cols=110 Identities=25% Similarity=0.437 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 116 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tv 190 (239)
T cd03296 116 KVHELLKLVQLDWLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT 190 (239)
T ss_pred HHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 46778999999876665 4567999999999999999999999999999999999999999999999985558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 191 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 191 VFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999975 678899999999999999999987764
No 47
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8e-22 Score=195.34 Aligned_cols=110 Identities=23% Similarity=0.418 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 140 ~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 214 (269)
T cd03294 140 RAAEALELVGLEGWEHKY-----PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214 (269)
T ss_pred HHHHHHHHcCCHhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 577889999998777754 567999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 215 ii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 215 VFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788999999999999999999987764
No 48
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.87 E-value=7.4e-22 Score=202.35 Aligned_cols=112 Identities=23% Similarity=0.423 Sum_probs=102.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++++.+||++..++ .+.+|||||||||+|||+|+.+|++++|||||++||+.++..+.+.++++.++.|+|
T Consensus 108 ~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~T 182 (363)
T TIGR01186 108 EKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT 182 (363)
T ss_pred HHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 467889999999877775 456899999999999999999999999999999999999999999999997666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++.+++||+++|++|+++..|+++++..
T Consensus 183 ii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 183 IVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999975 7889999999999999999999988753
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.87 E-value=7.7e-22 Score=191.58 Aligned_cols=109 Identities=28% Similarity=0.452 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+||
T Consensus 123 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~ti 196 (236)
T cd03219 123 RAEELLERVGLADLADR-----PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITV 196 (236)
T ss_pred HHHHHHHHcCccchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEE
Confidence 57788999999876665 4568999999999999999999999999999999999999999999999974 68999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 197 i~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 197 LLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred EEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 99999975 788899999999999999999987764
No 50
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.8e-22 Score=203.58 Aligned_cols=112 Identities=28% Similarity=0.497 Sum_probs=102.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+.+|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.++.|.|
T Consensus 112 ~~~~~~l~~lgL~~~~~~-----~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~t 186 (369)
T PRK11000 112 QRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186 (369)
T ss_pred HHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCE
Confidence 357889999999887775 457899999999999999999999999999999999999999999999998666899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++|++++|++|+++..|+++++..
T Consensus 187 vI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 187 MIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999975 7889999999999999999999988753
No 51
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.7e-22 Score=188.87 Aligned_cols=99 Identities=31% Similarity=0.479 Sum_probs=93.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++.++.+||.+..|. ++++|||||||||+|||||+.+|++|+||||++.||+.++..+.+.+.++.+++++|
T Consensus 109 ~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~T 183 (248)
T COG1116 109 ERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKT 183 (248)
T ss_pred HHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCE
Confidence 368999999999998885 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
|+++||+.. |...++|||++|.++
T Consensus 184 vllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 184 VLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred EEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999975 778899999999984
No 52
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.87 E-value=6.3e-22 Score=205.30 Aligned_cols=110 Identities=28% Similarity=0.451 Sum_probs=101.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+..++ .+++||||||||+.||++|+++|++++|||||+|||+.++.++++.|+++++ .|+|
T Consensus 118 ~~v~~~le~vgl~~~~~~-----~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~T 191 (402)
T PRK09536 118 AAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKT 191 (402)
T ss_pred HHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCE
Confidence 367889999999887775 4578999999999999999999999999999999999999999999999984 6899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.++|||+++|++|++++.|+++++.
T Consensus 192 IIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 192 AVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999975 788999999999999999999998754
No 53
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.6e-22 Score=188.67 Aligned_cols=104 Identities=27% Similarity=0.473 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 110 ~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 184 (213)
T cd03259 110 RVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITT 184 (213)
T ss_pred HHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 567889999998776653 567999999999999999999999999999999999999999999999985568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++|++++.|
T Consensus 185 i~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 185 IYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999975 788999999999999998765
No 54
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.87 E-value=4.3e-22 Score=199.42 Aligned_cols=113 Identities=25% Similarity=0.450 Sum_probs=106.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++|+++.+.|+|++..|+ ++++|||||||||++||||+.+|+++++|||+|+||...+..+...|+++.++.|.|
T Consensus 112 ~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T 186 (338)
T COG3839 112 KRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTT 186 (338)
T ss_pred HHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCc
Confidence 579999999999999885 578999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
+|.+|||.. |...++||+.+|++|++...|+|.++.+.
T Consensus 187 ~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 187 TIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred EEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999975 89999999999999999999999998753
No 55
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.87 E-value=9.2e-22 Score=200.05 Aligned_cols=115 Identities=23% Similarity=0.440 Sum_probs=101.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++++.+||.+..+. + +..+.+||||||||+.||++|+.+|+++++||||+|||..++.++++.|+++.++.|.|
T Consensus 137 ~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~t 214 (330)
T PRK09473 137 EESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTA 214 (330)
T ss_pred HHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 357788999999653322 2 24678999999999999999999999999999999999999999999999998666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|+++||+. .+.+++||+++|++|++++.|+++++.+
T Consensus 215 il~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 215 IIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999975 7778999999999999999999988763
No 56
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.3e-22 Score=203.42 Aligned_cols=112 Identities=22% Similarity=0.449 Sum_probs=103.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+..++ .+++|||||||||+|||+|+.+|++++|||||+|||...+..+.+.++++.++.|.|
T Consensus 128 ~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 202 (377)
T PRK11607 128 SRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVT 202 (377)
T ss_pred HHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 467889999999887765 567899999999999999999999999999999999999999999999998667999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++|++++|++|+++..|+++++.+
T Consensus 203 ii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 203 CVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999975 8899999999999999999999988764
No 57
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.87 E-value=1.1e-21 Score=199.33 Aligned_cols=111 Identities=27% Similarity=0.454 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+
T Consensus 80 ~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti 154 (325)
T TIGR01187 80 RVLEALRLVQLEEFADR-----KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITF 154 (325)
T ss_pred HHHHHHHHcCCcchhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 57889999999887775 4578999999999999999999999999999999999999999999999986669999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++.+++|++++|++|+++..|+++++.+
T Consensus 155 iivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 155 VFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999975 7889999999999999999999988753
No 58
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.4e-22 Score=189.04 Aligned_cols=109 Identities=24% Similarity=0.472 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 111 ~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv 185 (220)
T cd03265 111 RIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185 (220)
T ss_pred HHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 578899999998776654 567999999999999999999999999999999999999999999999985558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++
T Consensus 186 i~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 186 LLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999975 78889999999999999999987653
No 59
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.87 E-value=9e-22 Score=200.10 Aligned_cols=111 Identities=24% Similarity=0.413 Sum_probs=99.7
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||. +..+ ..+.+||||||||++||++|+.+|+++++||||+|||..++.++++.|+++.++.|.
T Consensus 139 ~~~~~~l~~vgl~~~~~~-----~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~ 213 (331)
T PRK15079 139 DRVKAMMLKVGLLPNLIN-----RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL 213 (331)
T ss_pred HHHHHHHHHcCCChHHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 3567889999994 3444 357889999999999999999999999999999999999999999999999866699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+|++||++. .+.+++||+++|++|++++.|+++++.
T Consensus 214 til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 214 SLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999975 788899999999999999999988775
No 60
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=1e-21 Score=197.88 Aligned_cols=110 Identities=30% Similarity=0.487 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 115 ~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~g~ti 188 (303)
T TIGR01288 115 VIPSLLEFARLESKADVR-----VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-ARGKTI 188 (303)
T ss_pred HHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 467789999998877764 46799999999999999999999999999999999999999999999997 469999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++.++||++++|++|++++.|+++++.+
T Consensus 189 l~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 189 LLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999975 7889999999999999999999988764
No 61
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=7.4e-22 Score=191.13 Aligned_cols=109 Identities=30% Similarity=0.444 Sum_probs=97.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 94 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti 168 (230)
T TIGR01184 94 IVEEHIALVGLTEAADK-----RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168 (230)
T ss_pred HHHHHHHHcCCHHHHcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 46788999999877665 3567999999999999999999999999999999999999999999999986568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.+|++++|++|+++..|+..++
T Consensus 169 i~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 169 LMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred EEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 99999975 78899999999999999998865443
No 62
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.2e-21 Score=195.48 Aligned_cols=112 Identities=26% Similarity=0.421 Sum_probs=101.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+..++ .++.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.+++++++.|+|
T Consensus 120 ~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~t 194 (283)
T PRK13636 120 KRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLT 194 (283)
T ss_pred HHHHHHHHHCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 357888999999877665 467899999999999999999999999999999999999999999999998555899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++.+.|||+++|++|++++.|+++++.+
T Consensus 195 illvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 195 IIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999975 6778999999999999999999987753
No 63
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.2e-21 Score=189.81 Aligned_cols=110 Identities=27% Similarity=0.442 Sum_probs=99.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.++++++.+||.+..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|+||
T Consensus 120 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tv 194 (233)
T cd03258 120 RVLELLELVGLEDKADA-----YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTI 194 (233)
T ss_pred HHHHHHHHCCChhhhhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 46788999999877665 4578999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 195 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 195 VLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999975 788899999999999999999887654
No 64
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=199.00 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=100.9
Q ss_pred hHHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++.++++.+||.+ ..+ ..+.+||||||||++||++|+.+|+++++||||+|||..++.++++.|+++.++.|.
T Consensus 132 ~~~~~~l~~~gL~~~~~~-----~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~ 206 (327)
T PRK11308 132 EKALAMMAKVGLRPEHYD-----RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL 206 (327)
T ss_pred HHHHHHHHHCCCChHHhc-----CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 46788999999963 344 357889999999999999999999999999999999999999999999999866799
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+|++||+.. .+.+++|++++|++|++++.|+++++.+
T Consensus 207 til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 207 SYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999975 7778999999999999999999888753
No 65
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=194.93 Aligned_cols=112 Identities=23% Similarity=0.444 Sum_probs=100.6
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||. +..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|+
T Consensus 123 ~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 197 (286)
T PRK13646 123 NYAHRLLMDLGFSRDVMSQ-----SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK 197 (286)
T ss_pred HHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 3577889999996 55664 46789999999999999999999999999999999999999999999999755699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|||+++|++. ++.+.+||+++|++|++++.|+++++.+
T Consensus 198 tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 198 TIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999975 7888999999999999999999887653
No 66
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.5e-21 Score=189.17 Aligned_cols=111 Identities=21% Similarity=0.391 Sum_probs=100.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. ++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++.|+|+
T Consensus 109 ~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ti 183 (232)
T PRK10771 109 KLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL 183 (232)
T ss_pred HHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 578899999998777754 568999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.+
T Consensus 184 ii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 184 LMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999975 7788999999999999999999877653
No 67
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.2e-21 Score=188.33 Aligned_cols=107 Identities=25% Similarity=0.441 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++.|+||
T Consensus 111 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ti 185 (220)
T cd03293 111 RAEELLELVGLSGFENA-----YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTV 185 (220)
T ss_pred HHHHHHHHcCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 57788999999877665 3567999999999999999999999999999999999999999999999875568999
Q ss_pred EEEecCcchHHHhccCeEEEEe--CCeEeEeCChh
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLC--NGQTAYFGDTN 115 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~--~G~~~~~G~~~ 115 (494)
|+++|++. ++.+.+|++++|+ +|+++..++++
T Consensus 186 ii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 186 LLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999975 6788999999999 79999988754
No 68
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=200.77 Aligned_cols=112 Identities=30% Similarity=0.491 Sum_probs=102.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 107 ~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~t 181 (352)
T PRK11144 107 AQFDKIVALLGIEPLLDR-----YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP 181 (352)
T ss_pred HHHHHHHHHcCCchhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCe
Confidence 467889999999887775 457899999999999999999999999999999999999999999999998666899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|+++|++. ++.+++|++++|++|+++..|+++++.+
T Consensus 182 ii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 182 ILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred EEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999975 7899999999999999999999988764
No 69
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.86 E-value=1.2e-21 Score=189.05 Aligned_cols=108 Identities=31% Similarity=0.444 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++.+. +.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ ++ +||
T Consensus 119 ~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~-~ti 193 (227)
T cd03260 119 RVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK-KE-YTI 193 (227)
T ss_pred HHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-hC-cEE
Confidence 57788999999876664320 47899999999999999999999999999999999999999999999997 44 899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhh
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~ 116 (494)
|+++|++. ++.+.+|++++|++|++++.|++++
T Consensus 194 i~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 194 VIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999975 7788999999999999999998765
No 70
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.86 E-value=4.7e-23 Score=194.71 Aligned_cols=206 Identities=25% Similarity=0.462 Sum_probs=180.9
Q ss_pred HHHHHHHHHhHHhh-cchhHH-HHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy16346 206 TQFKVLSQRNFQEA-RPRMLS-TLNWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPER 283 (494)
Q Consensus 206 ~Q~~~L~~R~~~~~-R~~~~~-~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er 283 (494)
||++.+++|+++.. ||+... ..+++..++.++++|.+|.+++++..+. ++.|.+++.+....+....+....+..||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 69999999999998 998766 7889999999999999999988544455 67888887777766555555556788999
Q ss_pred hHHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy16346 284 EVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCMDM 363 (494)
Q Consensus 284 ~v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~ 363 (494)
..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|++.|++.. +++.+++.+++...++.++|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~g~~~------- 151 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-SFFLFLLILLLSILCSSGLGLLL------- 151 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-cchheeccccccccccccccccc-------
Confidence 9999999999999999999999999999999999999999999998744 66666667777777777777777
Q ss_pred cccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhc
Q psy16346 364 QSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEF 427 (494)
Q Consensus 364 ~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef 427 (494)
++++++.+.+..+.+++..++++++|.+.| ++|+|++|+.|+||++|+.|++..++|
T Consensus 152 -------~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 152 -------AALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred -------ccchhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999 999999999999999999999998876
No 71
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.86 E-value=1.4e-21 Score=189.19 Aligned_cols=109 Identities=26% Similarity=0.484 Sum_probs=99.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ +.|+|+
T Consensus 113 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~ti 186 (232)
T cd03218 113 KLEELLEEFHITHLRKS-----KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK-DRGIGV 186 (232)
T ss_pred HHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 56788999999877665 456799999999999999999999999999999999999999999999997 468999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 187 i~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 187 LITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 99999975 789999999999999999999987654
No 72
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-21 Score=193.68 Aligned_cols=111 Identities=31% Similarity=0.504 Sum_probs=101.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|.||
T Consensus 117 ~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tv 191 (277)
T PRK13652 117 RVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191 (277)
T ss_pred HHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 578889999998777754 568999999999999999999999999999999999999999999999975558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++.+.+||+++|++|++++.|+++++.+
T Consensus 192 li~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 192 IFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999975 7889999999999999999999988753
No 73
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.86 E-value=2e-21 Score=188.09 Aligned_cols=110 Identities=21% Similarity=0.363 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCcc---cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 3 YVDHIINVLDLAN---CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 3 ~v~~~l~~l~L~~---~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
+++++++.+||.+ ..++ .+..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++.|
T Consensus 102 ~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 176 (230)
T TIGR02770 102 LILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176 (230)
T ss_pred HHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcC
Confidence 5788899999973 3343 4578999999999999999999999999999999999999999999999975568
Q ss_pred cEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+|||+++|++. ++...+|++++|++|+++..|+++++.
T Consensus 177 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 177 TGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999975 788899999999999999999988764
No 74
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.86 E-value=1.8e-21 Score=192.88 Aligned_cols=110 Identities=23% Similarity=0.359 Sum_probs=99.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 123 ~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 197 (269)
T PRK11831 123 TVMMKLEAVGLRGAAKL-----MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTC 197 (269)
T ss_pred HHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 46678999999887775 3567999999999999999999999999999999999999999999999975558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 198 iivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 198 VVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred EEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999975 788899999999999999999987764
No 75
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.86 E-value=2e-21 Score=190.40 Aligned_cols=109 Identities=27% Similarity=0.458 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..|+ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.||
T Consensus 124 ~~~~~l~~~gl~~~~~~-----~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tv 197 (250)
T PRK11264 124 RARELLAKVGLAGKETS-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA-QEKRTM 197 (250)
T ss_pred HHHHHHHHcCCcchhhC-----ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hcCCEE
Confidence 56788999999876664 457899999999999999999999999999999999999999999999997 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 198 i~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 198 VIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999975 788899999999999999999987764
No 76
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-21 Score=195.67 Aligned_cols=110 Identities=25% Similarity=0.474 Sum_probs=99.9
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||. +..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.
T Consensus 143 ~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCC
Confidence 3578899999996 55554 567899999999999999999999999999999999999999999999997 5699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. .+.+.+||+++|++|++++.|+++++.
T Consensus 217 tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999964 788999999999999999999998865
No 77
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=1.8e-21 Score=200.04 Aligned_cols=111 Identities=28% Similarity=0.514 Sum_probs=101.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+
T Consensus 111 ~~~~~l~~~gL~~~~~~-----~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 185 (354)
T TIGR02142 111 SFERVIELLGIGHLLGR-----LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185 (354)
T ss_pred HHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 57889999999887775 4578999999999999999999999999999999999999999999999986568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++..++|++++|++|+++..|+++++.+
T Consensus 186 iivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 186 LYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred EEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999975 7889999999999999999999888753
No 78
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=193.94 Aligned_cols=109 Identities=29% Similarity=0.444 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||. +..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ +.|+|
T Consensus 123 ~~~~~l~~~~L~~~~~~~-----~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~-~~g~t 196 (288)
T PRK13643 123 IAAEKLEMVGLADEFWEK-----SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH-QSGQT 196 (288)
T ss_pred HHHHHHHHcCCChhhccC-----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCE
Confidence 577889999995 34453 467899999999999999999999999999999999999999999999997 45999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.|||+++|++|++++.|+++++.
T Consensus 197 il~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 197 VVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999975 788899999999999999999998875
No 79
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-21 Score=190.82 Aligned_cols=110 Identities=19% Similarity=0.353 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 133 ~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti 207 (255)
T PRK11300 133 RAATWLERVGLLEHANR-----QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTV 207 (255)
T ss_pred HHHHHHHhCChhhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEE
Confidence 46677889999876665 4567999999999999999999999999999999999999999999999975458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 208 i~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 208 LLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 99999975 788999999999999999999987764
No 80
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=2.3e-21 Score=188.82 Aligned_cols=109 Identities=30% Similarity=0.480 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..+. .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ ++|+|+
T Consensus 116 ~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~~ti 189 (240)
T PRK09493 116 QARELLAKVGLAERAHH-----YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA-EEGMTM 189 (240)
T ss_pred HHHHHHHHcCChHHHhc-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcCCEE
Confidence 56789999999876665 456899999999999999999999999999999999999999999999987 468999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 190 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 190 VIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999975 778899999999999999999987764
No 81
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.5e-21 Score=200.74 Aligned_cols=111 Identities=24% Similarity=0.427 Sum_probs=101.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+++||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++.|+|
T Consensus 143 ~~~~e~L~~~gL~~~~~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~T 217 (400)
T PRK10070 143 EKALDALRQVGLENYAHS-----YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRT 217 (400)
T ss_pred HHHHHHHHHcCCChhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCe
Confidence 357789999999887775 457899999999999999999999999999999999999999999999997556999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus 218 IIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 218 IVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999975 788999999999999999999988765
No 82
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=2.1e-21 Score=185.62 Aligned_cols=104 Identities=25% Similarity=0.499 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 110 ~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv 184 (213)
T cd03301 110 RVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT 184 (213)
T ss_pred HHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 567889999998777754 567999999999999999999999999999999999999999999999985568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++|++++.|
T Consensus 185 i~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 185 IYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 99999975 788899999999999999876
No 83
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.7e-21 Score=192.51 Aligned_cols=110 Identities=25% Similarity=0.426 Sum_probs=99.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..+. .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|+|
T Consensus 119 ~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 193 (279)
T PRK13650 119 ERVNEALELVGMQDFKER-----EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMT 193 (279)
T ss_pred HHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 357889999999877765 457899999999999999999999999999999999999999999999998556999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++ ..+|++++|++|+++..|+++++.
T Consensus 194 ilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 194 VISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred EEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999975 55 579999999999999999988765
No 84
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-21 Score=192.17 Aligned_cols=109 Identities=29% Similarity=0.424 Sum_probs=98.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|
T Consensus 117 ~~~~~~l~~~~L~~~~~~-----~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~t 190 (274)
T PRK13647 117 RRVEEALKAVRMWDFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKT 190 (274)
T ss_pred HHHHHHHHHCCCHHHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 357788999999877765 4568999999999999999999999999999999999999999999999974 5899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
||+++|++. ++.+.|||+++|++|++++.|+++++
T Consensus 191 ili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 191 VIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999975 67789999999999999999998653
No 85
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.7e-21 Score=188.57 Aligned_cols=110 Identities=27% Similarity=0.530 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCcc--cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 3 YVDHIINVLDLAN--CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 3 ~v~~~l~~l~L~~--~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++++++.+||.+ ..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+
T Consensus 113 ~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~ 187 (242)
T cd03295 113 RADELLALVGLDPAEFADR-----YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK 187 (242)
T ss_pred HHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 5778899999985 4554 45789999999999999999999999999999999999999999999999855589
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 188 tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 188 TIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999975 778899999999999999999887664
No 86
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3e-21 Score=191.42 Aligned_cols=109 Identities=30% Similarity=0.515 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.||
T Consensus 116 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~ti 189 (271)
T PRK13638 116 RVDEALTLVDAQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV-AQGNHV 189 (271)
T ss_pred HHHHHHHHcCCHhHhcC-----CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 46778999999877665 456899999999999999999999999999999999999999999999997 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 190 i~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 190 IISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999975 778899999999999999999987764
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=2.8e-21 Score=183.66 Aligned_cols=100 Identities=34% Similarity=0.530 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|+
T Consensus 106 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 179 (205)
T cd03226 106 QAETVLKDLDLYALKER-----HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA-AQGKAV 179 (205)
T ss_pred HHHHHHHHcCCchhcCC-----CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 67889999999887775 456899999999999999999999999999999999999999999999997 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEe
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTA 109 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~ 109 (494)
|+++|++. ++.+++|++++|++|+++
T Consensus 180 i~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 180 IVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 99999975 678899999999999875
No 88
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.4e-21 Score=192.60 Aligned_cols=110 Identities=25% Similarity=0.426 Sum_probs=99.4
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||+ +..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.
T Consensus 123 ~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g~ 196 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISK-----SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAGH 196 (287)
T ss_pred HHHHHHHHHcCCChhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCC
Confidence 3578889999996 55564 457899999999999999999999999999999999999999999999997 5699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 197 tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 197 TVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999975 788999999999999999999988765
No 89
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-21 Score=190.48 Aligned_cols=110 Identities=28% Similarity=0.400 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||+.||++++.+|++++|||||+|||+.++..+.+.|++++++.|.||
T Consensus 123 ~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~ti 197 (265)
T PRK10253 123 AVTKAMQATGITHLADQ-----SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTL 197 (265)
T ss_pred HHHHHHHHcCCHHHhcC-----CcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 56788999999876665 4578999999999999999999999999999999999999999999999975458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 198 ii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 198 AAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999975 788999999999999999999988765
No 90
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=2.1e-21 Score=188.19 Aligned_cols=112 Identities=21% Similarity=0.366 Sum_probs=105.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.+.++..||+.+++. ++.+|||||||||.+||||+.+|+++++|||+|.|||--+.++.+.|.++.++.++|
T Consensus 143 ~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KT 217 (386)
T COG4175 143 ERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT 217 (386)
T ss_pred HHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCe
Confidence 578899999999999985 678999999999999999999999999999999999999999999999998889999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|||.. |.+++-|||.+|++|+++..|+|+|++.
T Consensus 218 IvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 218 IVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred EEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 999999965 8999999999999999999999999873
No 91
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.85 E-value=3e-21 Score=198.79 Aligned_cols=111 Identities=23% Similarity=0.398 Sum_probs=101.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+ .+.+||||||||+.|||+|+.+|++++|||||+|||+.++..+.+.|+++.++.|+|
T Consensus 143 ~~a~e~le~vgL~~~~~~-----~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~T 217 (382)
T TIGR03415 143 KRVDEQLELVGLAQWADK-----KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKT 217 (382)
T ss_pred HHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 357889999999887775 456799999999999999999999999999999999999999999999998656999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+++||+++|++|+++..|+++++.
T Consensus 218 II~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 218 IIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999975 788999999999999999999998875
No 92
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.6e-21 Score=194.93 Aligned_cols=110 Identities=26% Similarity=0.456 Sum_probs=98.8
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||. +..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+
T Consensus 154 ~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-~~g~ 227 (320)
T PRK13631 154 KLAKFYLNKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNK 227 (320)
T ss_pred HHHHHHHHHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCC
Confidence 3678889999996 44553 467899999999999999999999999999999999999999999999987 4699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 228 TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 228 TVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999975 678899999999999999999998764
No 93
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.85 E-value=2.9e-21 Score=194.32 Aligned_cols=110 Identities=25% Similarity=0.455 Sum_probs=101.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+. ++.||||||||+.||++|+++|++++|||||+|||+.++..+.+.+++++ + ++|
T Consensus 112 ~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~t 184 (301)
T TIGR03522 112 QRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKT 184 (301)
T ss_pred HHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCE
Confidence 3578899999999887764 46799999999999999999999999999999999999999999999986 4 799
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++.++|||+++|++|++++.|+++++..
T Consensus 185 iii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 185 IILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999975 7899999999999999999999998765
No 94
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.1e-21 Score=184.19 Aligned_cols=104 Identities=26% Similarity=0.431 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.||
T Consensus 108 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 182 (211)
T cd03298 108 AIEVALARVGLAGLEKR-----LPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV 182 (211)
T ss_pred HHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 57888999999877765 4568999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++|+++..|
T Consensus 183 i~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 183 LMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 99999975 778899999999999998764
No 95
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.3e-21 Score=184.46 Aligned_cols=104 Identities=32% Similarity=0.526 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++++.|+||
T Consensus 111 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 185 (214)
T cd03297 111 SVDELLDLLGLDHLLNR-----YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPV 185 (214)
T ss_pred HHHHHHHHcCCHhHhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 57788999999876664 4578999999999999999999999999999999999999999999999985558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++|+++..|
T Consensus 186 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 186 IFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999975 678899999999999998765
No 96
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4e-21 Score=191.42 Aligned_cols=111 Identities=23% Similarity=0.416 Sum_probs=99.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|
T Consensus 123 ~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t 197 (280)
T PRK13633 123 ERVDESLKKVGMYEYRRHA-----PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT 197 (280)
T ss_pred HHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 3578889999998877764 57899999999999999999999999999999999999999999999997556999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++.. +|++++|++|+++..|+++++..
T Consensus 198 illvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 198 IILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred EEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999986 5554 99999999999999999887753
No 97
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.5e-21 Score=191.94 Aligned_cols=110 Identities=22% Similarity=0.450 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.++|. +..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 129 ~~~~ll~~~~L~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 203 (289)
T PRK13645 129 KVPELLKLVQLPEDYVKR-----SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR 203 (289)
T ss_pred HHHHHHHHcCCChhHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 467788999994 55554 457899999999999999999999999999999999999999999999997556899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 204 iiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 204 IIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999975 788999999999999999999987764
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.85 E-value=5.2e-21 Score=185.87 Aligned_cols=110 Identities=30% Similarity=0.481 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++++|+|+
T Consensus 112 ~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 186 (236)
T TIGR03864 112 RIAALLARLGLAERADDK-----VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSV 186 (236)
T ss_pred HHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 467889999998776654 467999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++. .+|++++|++|++++.|+++++.+
T Consensus 187 ii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 187 LWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999986 554 599999999999999999877653
No 99
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.85 E-value=4.1e-21 Score=189.55 Aligned_cols=109 Identities=28% Similarity=0.470 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..|+ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 132 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tv 206 (262)
T PRK09984 132 RALQALTRVGMVHFAHQ-----RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITV 206 (262)
T ss_pred HHHHHHHHcCCHHHHhC-----CccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 57889999999877665 4567999999999999999999999999999999999999999999999985568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus 207 ii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 207 VVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999975 68899999999999999999998764
No 100
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.85 E-value=4.9e-21 Score=189.34 Aligned_cols=110 Identities=23% Similarity=0.381 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||. +..+. .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 129 ~~~~~l~~~gl~~~~~~~-----~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 129 RIAELLDMVGLRSEDADK-----LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHcCCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 577889999995 55554 457899999999999999999999999999999999999999999999998555899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. .+.+.+|++++|++|++++.|+++++.
T Consensus 204 iiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 204 YLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 999999975 778899999999999999999988765
No 101
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.85 E-value=6.4e-21 Score=187.31 Aligned_cols=110 Identities=22% Similarity=0.358 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCccc---ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 3 YVDHIINVLDLANC---QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 3 ~v~~~l~~l~L~~~---~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
++.++++.+||.+. .++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g 191 (254)
T PRK10418 117 TLTAALEAVGLENAARVLKL-----YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRA 191 (254)
T ss_pred HHHHHHHHcCCCChhhhhhc-----CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 56788999999752 333 4678999999999999999999999999999999999999999999999975568
Q ss_pred cEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
.|||+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 192 ~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 192 LGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred cEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999975 677899999999999999999988764
No 102
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.85 E-value=5.4e-21 Score=187.60 Aligned_cols=110 Identities=25% Similarity=0.409 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+
T Consensus 126 ~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 200 (252)
T TIGR03005 126 RAMELLDMVGLADKADH-----MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTM 200 (252)
T ss_pred HHHHHHHHcCChhHhhc-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 46788999999876664 4578999999999999999999999999999999999999999999999985568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+.+++.
T Consensus 201 iivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 201 LLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred EEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999975 778899999999999999999987664
No 103
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.85 E-value=6.5e-21 Score=187.58 Aligned_cols=109 Identities=27% Similarity=0.421 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCcccc-cccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLANCQ-HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++.++++.+||.+.. ++ .+++||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|
T Consensus 131 ~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~g~t 204 (257)
T PRK10619 131 RAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKT 204 (257)
T ss_pred HHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCCE
Confidence 577889999997653 43 467899999999999999999999999999999999999999999999997 46999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.|||+++|++|++++.|++++..
T Consensus 205 iiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 205 MVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999975 778899999999999999999987764
No 104
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.85 E-value=3.7e-21 Score=184.31 Aligned_cols=100 Identities=29% Similarity=0.487 Sum_probs=90.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.|
T Consensus 117 ~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~t 190 (216)
T TIGR00960 117 ERVSAALEKVGLEGKAHA-----LPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFN-RRGTT 190 (216)
T ss_pred HHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HCCCE
Confidence 357888999999877765 456899999999999999999999999999999999999999999999997 45899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
||+++|++. ++.+.+|++++|++|++
T Consensus 191 ii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 191 VLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999975 77889999999999974
No 105
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=5.6e-21 Score=187.88 Aligned_cols=108 Identities=27% Similarity=0.420 Sum_probs=97.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+..+. .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 112 ~~~~~~l~~~gl~~~~~~-----~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t 186 (257)
T PRK11247 112 DAALQALAAVGLADRANE-----WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFT 186 (257)
T ss_pred HHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 357789999999876664 457899999999999999999999999999999999999999999999987566899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTN 115 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~ 115 (494)
||+++|++. ++.+.+|++++|++|++++.|+.+
T Consensus 187 viivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 187 VLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999975 678899999999999999988754
No 106
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=4.5e-21 Score=171.99 Aligned_cols=110 Identities=27% Similarity=0.436 Sum_probs=101.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++.+.+|++.|+.+.+|. ++..|||||+||++|||||+.+|+++++|||||.|||+-.-++++.++++| +.|+|
T Consensus 131 e~Ae~~L~kVGi~ek~~~-----YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LA-eEgrT 204 (256)
T COG4598 131 ERAEKYLAKVGIAEKADA-----YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLA-EEGRT 204 (256)
T ss_pred HHHHHHHHHhCchhhhhc-----CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHH-HhCCe
Confidence 467888999999887774 678899999999999999999999999999999999999999999999999 67999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
.+++||... ...+...+++.|++|.+-.+|+|+++.
T Consensus 205 Mv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 205 MVVVTHEMG-FARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred EEEEeeehh-HHHhhhhheEEeecceecccCChHHHh
Confidence 999999964 777889999999999999999998774
No 107
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.85 E-value=1.6e-21 Score=196.42 Aligned_cols=112 Identities=25% Similarity=0.464 Sum_probs=105.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++|+++++.++|++.++. ++.+|||||+|||++||||+.+|++|+||||.|.||..-+.++...++++.++.|.|
T Consensus 115 ~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT 189 (352)
T COG3842 115 ARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189 (352)
T ss_pred HHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCe
Confidence 489999999999998774 678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|++|||. +|...++|||.+|++|++...|+|+++..
T Consensus 190 ~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 190 FVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred EEEEECCH-HHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999996 48899999999999999999999998864
No 108
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.85 E-value=3.9e-21 Score=183.07 Aligned_cols=104 Identities=32% Similarity=0.512 Sum_probs=94.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.++++++ .|+|
T Consensus 105 ~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~t 178 (208)
T cd03268 105 KRIDEVLDVVGLKDSAKK-----KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGIT 178 (208)
T ss_pred HHHHHHHHHcCCHHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCE
Confidence 357889999999877765 3567999999999999999999999999999999999999999999999874 6899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
+|+++|++. ++.+.+|++++|++|++++.|
T Consensus 179 ii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 179 VLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999975 677899999999999998765
No 109
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.9e-21 Score=187.66 Aligned_cols=109 Identities=30% Similarity=0.457 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ +.|+|+
T Consensus 118 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~-~~~~ti 191 (255)
T PRK11231 118 RVNQAMEQTRINHLADR-----RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN-TQGKTV 191 (255)
T ss_pred HHHHHHHHcCCHHHHcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 56788999999877665 456899999999999999999999999999999999999999999999987 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|++++..
T Consensus 192 ii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 192 VTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred EEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 99999975 788999999999999999999987664
No 110
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.7e-21 Score=185.29 Aligned_cols=110 Identities=28% Similarity=0.372 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||+ +..++ .+..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 110 ~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 184 (241)
T PRK14250 110 DVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLT 184 (241)
T ss_pred HHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 567889999996 44443 467899999999999999999999999999999999999999999999997546899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 185 ii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 185 VIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999975 778899999999999999999988764
No 111
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.4e-21 Score=188.52 Aligned_cols=110 Identities=29% Similarity=0.440 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.||
T Consensus 127 ~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~ti 201 (265)
T PRK10575 127 KVEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTV 201 (265)
T ss_pred HHHHHHHHcCCHHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 567889999998766654 567999999999999999999999999999999999999999999999975558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 202 ii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 202 IAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999975 788999999999999999999987654
No 112
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.85 E-value=5.1e-21 Score=184.00 Aligned_cols=109 Identities=23% Similarity=0.472 Sum_probs=96.1
Q ss_pred HHHHHHHHc-CCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVL-DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+ ++.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|
T Consensus 111 ~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~t 184 (222)
T cd03224 111 RLERVYELFPRLKERRKQ-----LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVT 184 (222)
T ss_pred HHHHHHHHHHhhhhhhhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCE
Confidence 456677877 46665554 4567999999999999999999999999999999999999999999999974 6899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 185 iii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 185 ILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999975 788999999999999999999987654
No 113
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.5e-21 Score=189.01 Aligned_cols=109 Identities=30% Similarity=0.483 Sum_probs=99.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++.++++.+||++..++. +++||||||||+.||++|+.+|++++|||||+|||+.++..+.+.++++++ .|.||
T Consensus 117 ~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~ti 190 (275)
T PRK13639 117 RVKEALKAVGMEGFENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITI 190 (275)
T ss_pred HHHHHHHHCCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEE
Confidence 577889999998877754 567999999999999999999999999999999999999999999999974 59999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 191 l~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 191 IISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999975 778899999999999999999988775
No 114
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.85 E-value=5.2e-21 Score=183.76 Aligned_cols=107 Identities=28% Similarity=0.544 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|+
T Consensus 113 ~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~ti 185 (220)
T cd03263 113 EVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-K-GRSI 185 (220)
T ss_pred HHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 577889999998777654 46799999999999999999999999999999999999999999999986 4 5899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. .+.+.+|++++|++|++++.|+++++
T Consensus 186 i~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 186 ILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999986 67789999999999999999988754
No 115
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.5e-21 Score=186.34 Aligned_cols=112 Identities=25% Similarity=0.369 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+||
T Consensus 122 ~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 198 (250)
T PRK14245 122 RVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTI 198 (250)
T ss_pred HHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 4678888899864322211 13567899999999999999999999999999999999999999999999985 4 7899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 199 iivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 199 VIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 99999975 788999999999999999999998775
No 116
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.85 E-value=7.1e-21 Score=186.19 Aligned_cols=108 Identities=30% Similarity=0.453 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCc----ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLA----NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
+++++++.+||. +..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~- 192 (247)
T TIGR00972 120 IVEESLKKAALWDEVKDRLHD-----SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK-K- 192 (247)
T ss_pred HHHHHHHHcCCCcchhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-
Confidence 567889999997 44443 467899999999999999999999999999999999999999999999987 4
Q ss_pred CcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
++|+|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 193 ~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 193 KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 489999999975 788899999999999999999987764
No 117
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.85 E-value=5.3e-21 Score=173.26 Aligned_cols=105 Identities=27% Similarity=0.474 Sum_probs=95.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++|.++|+..||.+.++. .+.+|||||+|||+||||++.+|++|+.||||.+|||..+.+|++++.++. ..|.|
T Consensus 116 ~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein-r~GtT 189 (223)
T COG2884 116 RRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN-RLGTT 189 (223)
T ss_pred HHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh-hcCcE
Confidence 678999999999988774 578999999999999999999999999999999999999999999999997 67999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~ 113 (494)
|++.||+- .-+-++-.|++.|++|+++....
T Consensus 190 Vl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 190 VLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred EEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999994 46667777999999999987654
No 118
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=8e-21 Score=186.47 Aligned_cols=110 Identities=26% Similarity=0.443 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+|+.+ ..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|.|
T Consensus 127 ~~~~~l~~l~l~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 201 (253)
T TIGR02323 127 AAHDWLEEVEIDPTRIDD-----LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLA 201 (253)
T ss_pred HHHHHHHHcCCChhhhhc-----CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 5678899999963 4554 457899999999999999999999999999999999999999999999987556899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 202 ii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 202 VIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 999999975 778899999999999999999987664
No 119
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=8.2e-21 Score=186.96 Aligned_cols=110 Identities=26% Similarity=0.430 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+|+.+ ..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|.|
T Consensus 130 ~~~~~l~~~~l~~~~~~~-----~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 204 (258)
T PRK11701 130 TAGDWLERVEIDAARIDD-----LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLA 204 (258)
T ss_pred HHHHHHHHcCCChhHHhC-----CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 4677889999963 4443 457899999999999999999999999999999999999999999999987555899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. .+.+.+|++++|++|++++.|+++++.
T Consensus 205 ii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 205 VVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999975 777899999999999999999987764
No 120
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7e-21 Score=189.10 Aligned_cols=108 Identities=26% Similarity=0.473 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ +.|.||
T Consensus 116 ~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~ti 189 (274)
T PRK13644 116 RVDRALAEIGLEKYRHR-----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH-EKGKTI 189 (274)
T ss_pred HHHHHHHHCCCHHHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 57788999999887775 456799999999999999999999999999999999999999999999997 569999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++ ..+|++++|++|++++.|+++++.
T Consensus 190 l~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 190 VYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred EEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999976 55 579999999999999999988764
No 121
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.7e-21 Score=189.24 Aligned_cols=111 Identities=24% Similarity=0.420 Sum_probs=99.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 119 ~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~t 193 (279)
T PRK13635 119 ERVDQALRQVGMEDFLNRE-----PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGIT 193 (279)
T ss_pred HHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCE
Confidence 3578899999998877754 56799999999999999999999999999999999999999999999998555899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++. .+|++++|++|++++.|+++++.+
T Consensus 194 ilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 194 VLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 999999976 555 599999999999999999887653
No 122
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.6e-21 Score=186.32 Aligned_cols=109 Identities=21% Similarity=0.403 Sum_probs=95.9
Q ss_pred HHHHHHHHc-CCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVL-DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+ ++.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|
T Consensus 116 ~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~~~t 189 (237)
T PRK11614 116 RIKWVYELFPRLHERRIQ-----RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR-EQGMT 189 (237)
T ss_pred HHHHHHHHHHHHHHHHhC-----chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHH-HCCCE
Confidence 356667777 46655553 456899999999999999999999999999999999999999999999987 45899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 190 iii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 190 IFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred EEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999975 788999999999999999999988774
No 123
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=7e-21 Score=183.46 Aligned_cols=108 Identities=29% Similarity=0.438 Sum_probs=97.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+++..++ .+++||||||||++||++|+.+|+++++||||+|||+.++..+.+.+++++ ++|+|+
T Consensus 93 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~-~~~~tv 166 (223)
T TIGR03771 93 AVRDALRRVGLTELADR-----PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA-GAGTAI 166 (223)
T ss_pred HHHHHHHHhCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HcCCEE
Confidence 47788999999876665 456799999999999999999999999999999999999999999999987 469999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|+++++ +|++++.|+++++.
T Consensus 167 ii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 167 LMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred EEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999975 788999999999 89999999987764
No 124
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.2e-21 Score=187.78 Aligned_cols=109 Identities=26% Similarity=0.412 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+..++ .+++||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 122 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti 196 (269)
T PRK13648 122 RVSEALKQVDMLERADY-----EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196 (269)
T ss_pred HHHHHHHHcCCchhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 56788999999877665 4578999999999999999999999999999999999999999999999975558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.. +||+++|++|++++.|+++++.
T Consensus 197 iivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 197 ISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred EEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999986 5654 9999999999999999988764
No 125
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.2e-21 Score=185.16 Aligned_cols=108 Identities=26% Similarity=0.438 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++ ++|+|+
T Consensus 121 ~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 194 (242)
T PRK11124 121 RAEKLLERLRLKPYADR-----FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA-ETGITQ 194 (242)
T ss_pred HHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHH-HcCCEE
Confidence 46778899999876665 456899999999999999999999999999999999999999999999986 568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus 195 i~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 195 VIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 99999975 67788999999999999999987754
No 126
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.9e-21 Score=185.59 Aligned_cols=109 Identities=23% Similarity=0.491 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ ..+.||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++ +.|+|+
T Consensus 117 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~ti 190 (241)
T PRK10895 117 RANELMEEFHIEHLRDS-----MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR-DSGLGV 190 (241)
T ss_pred HHHHHHHHcCCHHHhhc-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEE
Confidence 57888999999876554 457899999999999999999999999999999999999999999999987 568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 191 ii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 191 LITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999975 788999999999999999999988764
No 127
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=8e-21 Score=187.07 Aligned_cols=110 Identities=30% Similarity=0.420 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHh------hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELL------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~------~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
+++++++.+||++..++ .+.+||||||||++||++|+ .+|++++|||||+|||+.++..+.+.|+++++
T Consensus 114 ~~~~~l~~~~l~~~~~~-----~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (258)
T PRK13548 114 LVAAALAQVDLAHLAGR-----DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAH 188 (258)
T ss_pred HHHHHHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 46788999999876665 45689999999999999999 59999999999999999999999999999974
Q ss_pred hcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 77 ~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+.|+|||+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 189 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 189 ERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 56899999999975 788899999999999999999987764
No 128
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.7e-21 Score=189.58 Aligned_cols=111 Identities=25% Similarity=0.414 Sum_probs=99.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 122 ~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t 196 (282)
T PRK13640 122 KIVRDVLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT 196 (282)
T ss_pred HHHHHHHHHCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 357888999999877665 467899999999999999999999999999999999999999999999998556899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++ ..||++++|++|++++.|+++++.+
T Consensus 197 vli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 197 VISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred EEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999986 55 5799999999999999999987753
No 129
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=8.1e-21 Score=181.67 Aligned_cols=105 Identities=22% Similarity=0.375 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.++.|+|+
T Consensus 108 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~ti 182 (213)
T TIGR01277 108 KVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTL 182 (213)
T ss_pred HHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 57788999999877665 4568999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~ 113 (494)
|+++|++. ++.+.+|++++|++|+++..|.
T Consensus 183 i~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 183 LMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 99999975 7788999999999999998875
No 130
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=9.4e-21 Score=184.70 Aligned_cols=109 Identities=26% Similarity=0.371 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCc-ccccccccCccCC-CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKR-GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~-~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++++++.+||. +..++ .+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+
T Consensus 122 ~~~~~l~~~~l~~~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~ 195 (243)
T TIGR01978 122 LLKAKLALLGMDEEFLNR-----SVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR-EPDR 195 (243)
T ss_pred HHHHHHHHcCCchhhccc-----ccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH-HCCc
Confidence 467788889996 34454 333 599999999999999999999999999999999999999999999997 4689
Q ss_pred EEEEEecCcchHHHhc-cCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHM-FDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~-~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. .+... +|++++|++|++++.|+++++.
T Consensus 196 tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 196 SFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 9999999975 67777 8999999999999999987544
No 131
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.4e-21 Score=181.89 Aligned_cols=103 Identities=29% Similarity=0.552 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ ++|+||
T Consensus 108 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~-~~~~ti 181 (210)
T cd03269 108 RIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA-RAGKTV 181 (210)
T ss_pred HHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 57788999999877665 356799999999999999999999999999999999999999999999987 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++|++++.|
T Consensus 182 i~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 182 ILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999975 678899999999999998764
No 132
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.4e-21 Score=189.14 Aligned_cols=109 Identities=26% Similarity=0.432 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||.+ ..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|
T Consensus 124 ~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~t 197 (280)
T PRK13649 124 LAREKLALVGISESLFEK-----NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH-QSGMT 197 (280)
T ss_pred HHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCE
Confidence 4677889999963 4453 457899999999999999999999999999999999999999999999997 45899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 198 iiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 198 IVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999975 788899999999999999999988764
No 133
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.84 E-value=8.6e-21 Score=187.78 Aligned_cols=110 Identities=21% Similarity=0.345 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||. +..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|
T Consensus 128 ~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 202 (267)
T PRK15112 128 QIIETLRQVGLLPDHASY-----YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGIS 202 (267)
T ss_pred HHHHHHHHcCCChHHHhc-----CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcE
Confidence 567889999994 44553 456899999999999999999999999999999999999999999999998556899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.++||++++|++|+++..|+++++.
T Consensus 203 viivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 203 YIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 999999975 788899999999999999999887664
No 134
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=9e-21 Score=184.83 Aligned_cols=108 Identities=27% Similarity=0.402 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 123 ~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 195 (242)
T TIGR03411 123 RIEEVLETIGLADEADR-----LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA-G-KHSV 195 (242)
T ss_pred HHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 57788999999877665 456799999999999999999999999999999999999999999999996 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.||++++|++|+++..|+++++.
T Consensus 196 i~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 196 VVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999975 788899999999999999999987764
No 135
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.84 E-value=7.1e-21 Score=182.56 Aligned_cols=103 Identities=26% Similarity=0.496 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ +.|+|+
T Consensus 116 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 189 (218)
T cd03266 116 RLEELADRLGMEELLDR-----RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCI 189 (218)
T ss_pred HHHHHHHHcCCHHHHhh-----hhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 57789999999877765 456799999999999999999999999999999999999999999999996 468999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++|++++.|
T Consensus 190 i~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 190 LFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999975 788899999999999998764
No 136
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=183.32 Aligned_cols=110 Identities=32% Similarity=0.469 Sum_probs=99.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. ++.||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++++.|+|+
T Consensus 109 ~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti 183 (235)
T cd03299 109 KVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183 (235)
T ss_pred HHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 467789999998777754 567999999999999999999999999999999999999999999999975558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|++++..
T Consensus 184 li~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 184 LHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999975 688899999999999999999987664
No 137
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.84 E-value=8.1e-21 Score=182.90 Aligned_cols=107 Identities=33% Similarity=0.574 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++.++++.+||++..|+ .+..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 104 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~-~~~~ti 177 (223)
T TIGR03740 104 RIDEVLNIVDLTNTGKK-----KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP-EQGITV 177 (223)
T ss_pred HHHHHHHHcCCcHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 57788999999887665 356799999999999999999999999999999999999999999999997 468999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhh
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~ 116 (494)
|+++|++. ++.+.+|++++|++|++++.|++++
T Consensus 178 ii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 178 ILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999975 7888999999999999999998754
No 138
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=5.5e-21 Score=200.42 Aligned_cols=112 Identities=29% Similarity=0.431 Sum_probs=102.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++..||.+- ..++++.+||||||||++|||||+.+|+++++|||||.||+..+.++.+.|+++.++.|.|
T Consensus 407 ~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t 482 (539)
T COG1123 407 ARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482 (539)
T ss_pred HHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCE
Confidence 468899999999842 3345789999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
.++++||.. .+..+||||.+|++|+++..|+.+++.
T Consensus 483 ~lfISHDl~-vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 483 YLFISHDLA-VVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEEeCCHH-HHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 999999965 889999999999999999999887765
No 139
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.84 E-value=1.1e-20 Score=185.85 Aligned_cols=109 Identities=30% Similarity=0.461 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+..++ .+..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ ++|.||
T Consensus 117 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 190 (256)
T TIGR03873 117 VVDRALARTELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA-ATGVTV 190 (256)
T ss_pred HHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH-hcCCEE
Confidence 56788999999876665 456799999999999999999999999999999999999999999999997 568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+.+++.
T Consensus 191 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 191 VAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 99999976 788999999999999999999987764
No 140
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.84 E-value=7.4e-21 Score=182.43 Aligned_cols=99 Identities=29% Similarity=0.517 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 120 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 194 (218)
T cd03255 120 RAEELLERVGLGDRLNH-----YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTI 194 (218)
T ss_pred HHHHHHHHcCCchhhhc-----ChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 57889999999877665 3567999999999999999999999999999999999999999999999975468999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
|+++|++. ++. .+|++++|++|++
T Consensus 195 i~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 195 VVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred EEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 99999985 554 9999999999974
No 141
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.6e-20 Score=181.92 Aligned_cols=110 Identities=26% Similarity=0.465 Sum_probs=99.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. ++.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.+++++++.|+||
T Consensus 110 ~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti 184 (232)
T cd03300 110 RVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184 (232)
T ss_pred HHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 567889999998877753 568999999999999999999999999999999999999999999999975558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+.++..
T Consensus 185 ii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 185 VFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred EEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 99999975 688999999999999999999876654
No 142
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.84 E-value=1.1e-20 Score=180.66 Aligned_cols=102 Identities=30% Similarity=0.517 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+
T Consensus 112 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tv 185 (213)
T cd03235 112 KVDEALERVGLSELADR-----QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTI 185 (213)
T ss_pred HHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 57788999999876665 4567999999999999999999999999999999999999999999999974 68999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++| +++.|
T Consensus 186 i~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 186 LVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999975 788899999999875 66654
No 143
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.6e-21 Score=182.88 Aligned_cols=112 Identities=27% Similarity=0.464 Sum_probs=105.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
...+++.+.||++|..+. ++..|||||||||+|||||++.|++|++|||.+.||-..+.+++..|++++++.+..
T Consensus 107 ~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IP 181 (352)
T COG4148 107 AQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP 181 (352)
T ss_pred HhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCC
Confidence 357899999999998885 577899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+.++|.+ +|+.+++|+|++|++|++..+|+.+++..
T Consensus 182 IlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 182 ILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred EEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999997 58999999999999999999999988763
No 144
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=182.40 Aligned_cols=106 Identities=26% Similarity=0.370 Sum_probs=93.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+++||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 124 ~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 198 (233)
T PRK11629 124 SRALEMLAAVGLEHRANH-----RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 198 (233)
T ss_pred HHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 357889999999877665 356799999999999999999999999999999999999999999999997556899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCCh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~ 114 (494)
||+++|++. ++.. +|++++|++|+++..|+.
T Consensus 199 vii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 199 FLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred EEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 999999975 5554 689999999999998874
No 145
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=1.2e-20 Score=183.40 Aligned_cols=104 Identities=37% Similarity=0.538 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. ++.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 133 ~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 207 (236)
T cd03267 133 RLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207 (236)
T ss_pred HHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Confidence 467789999998877764 467999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++|++++.|
T Consensus 208 iivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 208 LLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred EEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 99999975 778899999999999998765
No 146
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.1e-21 Score=177.06 Aligned_cols=112 Identities=27% Similarity=0.412 Sum_probs=97.9
Q ss_pred hHHHHHHHHcCC-cccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDL-ANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L-~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++|++-|+.-.| ++++|.+= ....+|||||+||++|||+|+.+|+||+||||||.|||.+..+|-+++.++. ..-
T Consensus 124 eiVe~sLk~AaLWdEVKDrL~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~y 199 (253)
T COG1117 124 EIVESSLKKAALWDEVKDRLH--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK--KKY 199 (253)
T ss_pred HHHHHHHHHhHhHHHhHHHhh--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH--hcc
Confidence 457777777777 44555431 2456899999999999999999999999999999999999999999999996 368
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++||++. +..+..|+...+..|+++++|+++++.
T Consensus 200 TIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 200 TIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred EEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999975 899999999999999999999998764
No 147
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.8e-20 Score=185.95 Aligned_cols=109 Identities=23% Similarity=0.413 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.++||
T Consensus 122 ~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti 196 (271)
T PRK13632 122 IIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTL 196 (271)
T ss_pred HHHHHHHHcCCHHHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 467889999998777754 578999999999999999999999999999999999999999999999975446999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++ ..+|++++|++|+++..|+++++.
T Consensus 197 ii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 197 ISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred EEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 99999986 45 479999999999999999987764
No 148
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=180.03 Aligned_cols=102 Identities=25% Similarity=0.516 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|+
T Consensus 110 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 182 (211)
T cd03264 110 RVDEVLELVNLGDRAKK-----KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG-E-DRIV 182 (211)
T ss_pred HHHHHHHHCCCHHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEE
Confidence 56788999999877665 356799999999999999999999999999999999999999999999997 4 5899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+||+++|++|++++.|
T Consensus 183 i~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 183 ILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999975 677899999999999998765
No 149
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.3e-20 Score=184.14 Aligned_cols=115 Identities=29% Similarity=0.378 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++.++++.+|+.+..+... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 126 ~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~ti 204 (261)
T PRK14258 126 IVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTM 204 (261)
T ss_pred HHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 4567788888754222111 235678999999999999999999999999999999999999999999999875568999
Q ss_pred EEEecCcchHHHhccCeEEEEeC-----CeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN-----GQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~-----G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++.+.+|++++|++ |++++.|+++++.+
T Consensus 205 iivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 205 VIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred EEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence 99999975 78899999999999 99999999988743
No 150
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-20 Score=184.34 Aligned_cols=112 Identities=26% Similarity=0.358 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+||
T Consensus 130 ~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~ti 206 (258)
T PRK14268 130 VVENALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTI 206 (258)
T ss_pred HHHHHHHHcCCCcchhhhh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEE
Confidence 4677888888843211111 13467899999999999999999999999999999999999999999999986 4 7999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 207 iivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 207 VIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999975 778899999999999999999988764
No 151
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.6e-20 Score=184.57 Aligned_cols=107 Identities=28% Similarity=0.430 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 108 ~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tv 182 (255)
T PRK11248 108 IAHQMLKKVGLEGAEKR-----YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182 (255)
T ss_pred HHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 57889999999876664 4568999999999999999999999999999999999999999999999865568999
Q ss_pred EEEecCcchHHHhccCeEEEEe--CCeEeEeCChh
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLC--NGQTAYFGDTN 115 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~--~G~~~~~G~~~ 115 (494)
|+++|++. ++.+.||++++|+ +|+++..++.+
T Consensus 183 iivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 183 LLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999975 7889999999998 59999887653
No 152
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.1e-20 Score=183.53 Aligned_cols=112 Identities=24% Similarity=0.345 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+||
T Consensus 125 ~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tv 201 (253)
T PRK14242 125 RVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTI 201 (253)
T ss_pred HHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 4667788888854221111 23567899999999999999999999999999999999999999999999985 4 7899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 202 ii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 202 IIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 778899999999999999999987664
No 153
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.84 E-value=1.7e-20 Score=180.91 Aligned_cols=103 Identities=27% Similarity=0.391 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +++||||||||++||++++.+|++++|||||+|||+.++..+.+.++++++ .|+||
T Consensus 122 ~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~~~ti 195 (224)
T cd03220 122 KIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTV 195 (224)
T ss_pred HHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 467788889998777754 467999999999999999999999999999999999999999999999974 58999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. ++.+.+|++++|++|++++.|
T Consensus 196 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 196 ILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999975 778899999999999998765
No 154
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=183.41 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCc----ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLA----NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
++++.++.+|+. +..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus 126 ~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~- 198 (254)
T PRK14273 126 IVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E- 198 (254)
T ss_pred HHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-
Confidence 466778888873 23333 467899999999999999999999999999999999999999999999995 4
Q ss_pred CcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+.|+|+++|++. ++.+.+||+++|++|+++..|+++++.
T Consensus 199 ~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 199 SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 689999999975 778899999999999999999988764
No 155
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=1.4e-20 Score=181.99 Aligned_cols=109 Identities=23% Similarity=0.383 Sum_probs=95.5
Q ss_pred HHHHHHHHcC-CcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLD-LANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.++++++.++ +.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 110 ~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 184 (230)
T TIGR03410 110 IPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184 (230)
T ss_pred HHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcE
Confidence 3466777776 4554454 467899999999999999999999999999999999999999999999987545899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
+|+++|++. ++.+.+|+++++++|+++..|+++++
T Consensus 185 ii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 185 ILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999975 78889999999999999999998776
No 156
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.83 E-value=2.5e-20 Score=182.45 Aligned_cols=109 Identities=28% Similarity=0.404 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhh-------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLT-------NPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~-------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
+++++++.+||.+..++ .++.||||||||++||++|+. +|++++|||||+|||+.++..+.+.|++++
T Consensus 106 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 180 (248)
T PRK03695 106 ALNEVAEALGLDDKLGR-----SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180 (248)
T ss_pred HHHHHHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 57889999999876665 456899999999999999997 679999999999999999999999999997
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+.|+|||+++|++. ++.+.+|++++|++|++++.|+.+++.
T Consensus 181 -~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 181 -QQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred -hCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 45899999999975 788999999999999999999987653
No 157
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.83 E-value=2.6e-20 Score=179.80 Aligned_cols=103 Identities=43% Similarity=0.817 Sum_probs=91.7
Q ss_pred HHH-HHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 4 VDH-IINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 4 v~~-~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++ .++.+++.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ +.|.|+
T Consensus 123 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~-~~~~ti 196 (226)
T cd03234 123 VEDVLLRDLALTRIGGN-----LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA-RRNRIV 196 (226)
T ss_pred HHHHHHHhhcchhhhcc-----cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 344 7888888766554 457899999999999999999999999999999999999999999999987 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++..++.+.+|++++|++|++++.|
T Consensus 197 ii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999855789999999999999999876
No 158
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=182.42 Aligned_cols=112 Identities=29% Similarity=0.364 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..+.. -+..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|+
T Consensus 122 ~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~ti 198 (250)
T PRK14247 122 RVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTI 198 (250)
T ss_pred HHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 467788999985421111 123567899999999999999999999999999999999999999999999985 4 7999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 199 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 199 VLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999975 678899999999999999999988764
No 159
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.6e-20 Score=185.34 Aligned_cols=109 Identities=24% Similarity=0.351 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+..||||||||++||++|+.+|+++++||||+|||+.++..+.+.+++++++.|.||
T Consensus 120 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 194 (277)
T PRK13642 120 RVDEALLAVNMLDFKTR-----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194 (277)
T ss_pred HHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 56788999999877665 4578999999999999999999999999999999999999999999999985569999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++. .+|++++|++|+++..|+++++.
T Consensus 195 il~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 195 LSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred EEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999976 454 69999999999999999988765
No 160
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=1.7e-20 Score=179.11 Aligned_cols=98 Identities=33% Similarity=0.593 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+||
T Consensus 114 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tv 187 (211)
T cd03225 114 RVEEALELVGLEGLRDR-----SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTI 187 (211)
T ss_pred HHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEE
Confidence 46778999999876664 4567999999999999999999999999999999999999999999999974 58999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCe
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
|+++|++. ++.+.||++++|++|+
T Consensus 188 i~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 188 IIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999975 7888899999999885
No 161
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.83 E-value=1.9e-20 Score=185.36 Aligned_cols=110 Identities=22% Similarity=0.347 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+|+. +..++ ..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|
T Consensus 130 ~~~~~l~~~gl~~~~~~~-----~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 204 (268)
T PRK10419 130 RASEMLRAVDLDDSVLDK-----RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTA 204 (268)
T ss_pred HHHHHHHHcCCChhHhhC-----CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcE
Confidence 578889999996 45554 457899999999999999999999999999999999999999999999997556899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+|+++|++. ++.+++|++++|++|++++.|+++++.
T Consensus 205 iiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 205 CLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999975 778899999999999999999987754
No 162
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.83 E-value=2.6e-20 Score=184.66 Aligned_cols=110 Identities=26% Similarity=0.358 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHh---------hCCCEeEEeCCCCCcCHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELL---------TNPALMLLDEPTSGLDSHAAYSLMSSLKR 73 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~---------~~p~~lllDEPtsgLD~~~~~~i~~~l~~ 73 (494)
+++++++.+||.+..++ .+..||||||||++||++|+ .+|++++|||||+|||+.++..+.+.+++
T Consensus 125 ~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 125 IAWQALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred HHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 46788999999876554 45789999999999999999 59999999999999999999999999999
Q ss_pred HHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 74 YAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 74 l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
++++.|+|||+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 200 ~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 200 LARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 97545899999999975 788899999999999999999987764
No 163
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.5e-20 Score=182.73 Aligned_cols=112 Identities=23% Similarity=0.358 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.++++++.+||.+...+.+. ..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. + |+||
T Consensus 125 ~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 201 (251)
T PRK14244 125 IVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTI 201 (251)
T ss_pred HHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 45678899998653222221 2467899999999999999999999999999999999999999999999985 4 8999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 202 iiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 202 IVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999975 778899999999999999999987664
No 164
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=2.1e-20 Score=201.95 Aligned_cols=114 Identities=33% Similarity=0.480 Sum_probs=102.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+++|||||||||.||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 147 ~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 221 (520)
T TIGR03269 147 GRAVDLIEMVQLSHRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS 221 (520)
T ss_pred HHHHHHHHHcCChhhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 367889999999877664 457899999999999999999999999999999999999999999999997666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFF 121 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f 121 (494)
||+++|++. .+.+.||++++|++|++++.|+++++.+.+
T Consensus 222 viivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 222 MVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999999975 678899999999999999999988876543
No 165
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.83 E-value=2.2e-20 Score=179.61 Aligned_cols=100 Identities=26% Similarity=0.404 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 121 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 195 (221)
T TIGR02211 121 RAYEMLEKVGLEHRINH-----RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF 195 (221)
T ss_pred HHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 56788999999876664 4568999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEe
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTA 109 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~ 109 (494)
|+++|++. ++ +.+|++++|++|+++
T Consensus 196 i~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 196 LVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred EEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 99999975 55 458999999999875
No 166
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.83 E-value=2.9e-20 Score=180.81 Aligned_cols=110 Identities=25% Similarity=0.482 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.++++++.+++.+..++. ++.|||||+||+.||++++.+|++++|||||+|||+.++..+.+.|++++++.|+|+
T Consensus 110 ~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tv 184 (237)
T TIGR00968 110 RVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT 184 (237)
T ss_pred HHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 467889999997766653 567999999999999999999999999999999999999999999999875458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+.+++.
T Consensus 185 li~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 185 VFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred EEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999975 788999999999999999999988765
No 167
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.83 E-value=3.8e-20 Score=181.51 Aligned_cols=108 Identities=23% Similarity=0.361 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCc-ccccccccCccCC-CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKR-GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~-~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++++++.+|+. +..++. +. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ ++|+
T Consensus 129 ~~~~~l~~~~l~~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~ 202 (252)
T CHL00131 129 IINEKLKLVGMDPSFLSRN-----VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLM-TSEN 202 (252)
T ss_pred HHHHHHHHcCCchhhhccc-----cccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCC
Confidence 456788888986 344432 33 599999999999999999999999999999999999999999999997 5689
Q ss_pred EEEEEecCcchHHHhc-cCeEEEEeCCeEeEeCChhhH
Q psy16346 81 TVVVTVHQPSSQIFHM-FDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 81 tii~~~H~p~~~i~~~-~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|||+++|++. .+... +|++++|++|++++.|+++.+
T Consensus 203 tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 203 SIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 9999999975 55555 899999999999999998743
No 168
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.83 E-value=2e-20 Score=202.50 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=99.4
Q ss_pred hHHHHHHHHcCCccc---ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 2 TYVDHIINVLDLANC---QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~---~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
++++++++.+||.+. .++ .+.+|||||||||.||++|+.+|++++|||||+|||+.++..+.+.|++++++.
T Consensus 132 ~~~~~~l~~~gl~~~~~~~~~-----~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~ 206 (529)
T PRK15134 132 GEILNCLDRVGIRQAAKRLTD-----YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL 206 (529)
T ss_pred HHHHHHHHHCCCCChHHHHhh-----CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhc
Confidence 467889999999752 343 467899999999999999999999999999999999999999999999998555
Q ss_pred CcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|.|||+++|++. .+.+.+||+++|++|++++.|+++++.
T Consensus 207 g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 207 NMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred CCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 899999999975 778899999999999999999987764
No 169
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.83 E-value=1.9e-20 Score=179.10 Aligned_cols=98 Identities=32% Similarity=0.529 Sum_probs=88.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ +.|+|+
T Consensus 117 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 190 (214)
T TIGR02673 117 RVGAALRQVGLEHKADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN-KRGTTV 190 (214)
T ss_pred HHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HcCCEE
Confidence 56788999999876664 356899999999999999999999999999999999999999999999986 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCe
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
|+++|++. ++.+.+|++++|++|+
T Consensus 191 i~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 191 IVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEeCCHH-HHHHhcCEEEEecCCC
Confidence 99999975 7888999999999985
No 170
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.83 E-value=1.8e-20 Score=179.15 Aligned_cols=99 Identities=29% Similarity=0.521 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|+
T Consensus 116 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~ti 189 (214)
T cd03292 116 RVPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN-KAGTTV 189 (214)
T ss_pred HHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HcCCEE
Confidence 56788999999877665 356899999999999999999999999999999999999999999999986 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
|+++|++. ++.+.+|++++|++|++
T Consensus 190 iivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 190 VVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999975 77789999999999974
No 171
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.83 E-value=2.5e-20 Score=179.93 Aligned_cols=102 Identities=27% Similarity=0.430 Sum_probs=90.2
Q ss_pred HHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 5 DHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 5 ~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
+++++.+++. +..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||
T Consensus 126 ~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 200 (228)
T cd03257 126 LLLLVGVGLPEEVLNR-----YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200 (228)
T ss_pred HHHHHHCCCChhHhhC-----CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4678888884 44554 45679999999999999999999999999999999999999999999999854589999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
+++|++. ++.+.+|++++|++|+++..|
T Consensus 201 ~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 201 FITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred EEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 9999975 777899999999999998765
No 172
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=205.34 Aligned_cols=111 Identities=21% Similarity=0.304 Sum_probs=100.6
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||+ +..++ .+++|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|++++++.|.
T Consensus 441 ~~~~~~L~~~gL~~~~~~~-----~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~ 515 (623)
T PRK10261 441 ARVAWLLERVGLLPEHAWR-----YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515 (623)
T ss_pred HHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3578899999996 45554 56789999999999999999999999999999999999999999999999866699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. .+.++|||+++|++|++++.|+++++.
T Consensus 516 tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 516 AYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999975 788999999999999999999998875
No 173
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.83 E-value=5.6e-20 Score=179.85 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+++. +..++.+ .++||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++ +.|+|
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~-~~~~t 197 (248)
T PRK09580 123 LMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR-DGKRS 197 (248)
T ss_pred HHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCE
Confidence 456677888884 3344322 13799999999999999999999999999999999999999999999997 56899
Q ss_pred EEEEecCcchHHHhc-cCeEEEEeCCeEeEeCChhhHHHHHHhcCC
Q psy16346 82 VVVTVHQPSSQIFHM-FDKLLLLCNGQTAYFGDTNKVVDFFHNIGL 126 (494)
Q Consensus 82 ii~~~H~p~~~i~~~-~d~v~ll~~G~~~~~G~~~~~~~~f~~~g~ 126 (494)
||+++|++. .+... +|++++|++|++++.|+++.+ +.++..++
T Consensus 198 iii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 198 FIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence 999999975 55555 899999999999999998754 33344443
No 174
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=3.2e-20 Score=172.88 Aligned_cols=100 Identities=36% Similarity=0.536 Sum_probs=89.2
Q ss_pred HHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q psy16346 7 IINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86 (494)
Q Consensus 7 ~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~ 86 (494)
+++.+||++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++++.|.|+|+++
T Consensus 81 ~l~~~gl~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~s 155 (180)
T cd03214 81 ALELLGLAHLADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL 155 (180)
T ss_pred HHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5788898876654 45789999999999999999999999999999999999999999999999744489999999
Q ss_pred cCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 87 HQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 87 H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|++. ++.+++|++++|++|++++.|
T Consensus 156 h~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 156 HDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9975 677899999999999998754
No 175
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-20 Score=183.59 Aligned_cols=108 Identities=28% Similarity=0.451 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++. +..||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 122 ~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~-~~g~tv 195 (272)
T PRK15056 122 IVTAALARVDMVEFRHRQ-----IGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR-DEGKTM 195 (272)
T ss_pred HHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 467789999998877754 46799999999999999999999999999999999999999999999997 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|+++++ +|++++.|+++++.
T Consensus 196 iivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 196 LVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred EEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999975 788999999877 89999999987753
No 176
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.3e-20 Score=181.97 Aligned_cols=112 Identities=28% Similarity=0.380 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+...... +...++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|+
T Consensus 131 ~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 207 (259)
T PRK14274 131 IVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTI 207 (259)
T ss_pred HHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 4566788888853211111 23567899999999999999999999999999999999999999999999986 4 7899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 208 iivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 208 VIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999975 788899999999999999999988764
No 177
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.9e-20 Score=180.89 Aligned_cols=112 Identities=28% Similarity=0.383 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+...... +..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 125 ~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~ti 201 (253)
T PRK14267 125 RVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-EYTI 201 (253)
T ss_pred HHHHHHHHcCCccchhhhh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-CCEE
Confidence 4677888888853211111 23567899999999999999999999999999999999999999999999986 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 202 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 202 VLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788899999999999999999987764
No 178
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.83 E-value=4e-20 Score=181.28 Aligned_cols=110 Identities=24% Similarity=0.343 Sum_probs=97.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++++.+||.+..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 99 ~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~t 173 (251)
T PRK09544 99 EDILPALKRVQAGHLIDA-----PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA 173 (251)
T ss_pred HHHHHHHHHcCChHHHhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 356788999999877765 456899999999999999999999999999999999999999999999997545899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.+|++++|+ |+++..|+++++.
T Consensus 174 iiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 174 VLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred EEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 999999975 7889999999996 4799999987764
No 179
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.83 E-value=3.2e-20 Score=199.14 Aligned_cols=110 Identities=21% Similarity=0.340 Sum_probs=100.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.|
T Consensus 114 ~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~t 187 (490)
T PRK10938 114 ARCEQLAQQFGITALLDR-----RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH-QSGIT 187 (490)
T ss_pred HHHHHHHHHcCCHhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCe
Confidence 367889999999877765 456799999999999999999999999999999999999999999999997 45899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. .+.+.||++++|++|+++..|+++++.
T Consensus 188 vii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 188 LVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999975 788999999999999999999987754
No 180
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=2.8e-20 Score=185.36 Aligned_cols=113 Identities=25% Similarity=0.423 Sum_probs=103.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.+.|++.||++..- ++++.+.|||||||++||||++.+|++++||||||.||-.-+.+++++|+++.+++|.+
T Consensus 404 ~rv~~aL~EVGLDp~~r----~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~Ls 479 (534)
T COG4172 404 QRVIEALEEVGLDPATR----NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLS 479 (534)
T ss_pred HHHHHHHHHcCCChhHh----hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCe
Confidence 57888999999976422 35789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
-++++||.. .+-.+||+|++|.+|++++.|+.+++.+
T Consensus 480 YLFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 480 YLFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred EEEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 999999975 7889999999999999999999988763
No 181
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.2e-20 Score=179.99 Aligned_cols=112 Identities=26% Similarity=0.342 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+...... +...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|+
T Consensus 118 ~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~ti 194 (246)
T PRK14269 118 LVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSM 194 (246)
T ss_pred HHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEE
Confidence 4677899999953211111 23467899999999999999999999999999999999999999999999986 4 8999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|++++..
T Consensus 195 ii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 195 IMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred EEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999975 788899999999999999999987764
No 182
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.83 E-value=3.2e-20 Score=177.38 Aligned_cols=99 Identities=31% Similarity=0.488 Sum_probs=89.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+++..++ .+++||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 115 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tv 188 (213)
T cd03262 115 RALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTM 188 (213)
T ss_pred HHHHHHHHcCCHhHhhh-----CccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HcCCEE
Confidence 56788999999876665 457899999999999999999999999999999999999999999999997 468999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
|+++|++. ++.+.+|++++|++|++
T Consensus 189 i~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 189 VVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999975 78889999999999974
No 183
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.83 E-value=2.9e-20 Score=201.24 Aligned_cols=110 Identities=26% Similarity=0.452 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||+ +..++ .+++|||||||||.||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 404 ~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 478 (529)
T PRK15134 404 QVIAVMEEVGLDPETRHR-----YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLA 478 (529)
T ss_pred HHHHHHHHcCCCHHHHhc-----CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCE
Confidence 577889999996 35554 457899999999999999999999999999999999999999999999998556899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.||++++|++|+++..|+++++.
T Consensus 479 vi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 479 YLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 999999975 788899999999999999999987774
No 184
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.83 E-value=4.3e-20 Score=178.42 Aligned_cols=103 Identities=25% Similarity=0.367 Sum_probs=91.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+..++ .+..||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|
T Consensus 125 ~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 199 (228)
T PRK10584 125 NGAKALLEQLGLGKRLDH-----LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT 199 (228)
T ss_pred HHHHHHHHHcCCHhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 357888999999876665 356799999999999999999999999999999999999999999999997556899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEe
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYF 111 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~ 111 (494)
||+++|++. .+ +.+|++++|++|++++.
T Consensus 200 ii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 200 LILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred EEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 999999976 55 55999999999998753
No 185
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.83 E-value=5.4e-20 Score=193.68 Aligned_cols=112 Identities=27% Similarity=0.404 Sum_probs=100.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 123 ~i~elLe~lgL~~~ld~-----~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TI 196 (549)
T PRK13545 123 IIPEIIEFADIGKFIYQ-----PVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTI 196 (549)
T ss_pred HHHHHHHHcCChhHhhC-----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 45678899999877665 457899999999999999999999999999999999999999999999986 568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFF 121 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f 121 (494)
|+++|++. ++.+.||++++|++|++++.|+++++.+.+
T Consensus 197 IIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 197 FFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999975 788899999999999999999998876543
No 186
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.5e-20 Score=181.35 Aligned_cols=112 Identities=26% Similarity=0.344 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+...... +....+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.||
T Consensus 132 ~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~ti 208 (260)
T PRK10744 132 RVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTV 208 (260)
T ss_pred HHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 5678888988743111111 13467899999999999999999999999999999999999999999999985 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 209 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 209 VIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 678899999999999999999988764
No 187
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.9e-20 Score=180.14 Aligned_cols=112 Identities=26% Similarity=0.350 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++.+...+.. +..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 124 ~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 200 (252)
T PRK14239 124 AVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTM 200 (252)
T ss_pred HHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeE
Confidence 3556778888743211111 23567899999999999999999999999999999999999999999999986 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 201 i~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 201 LLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788899999999999999999988764
No 188
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6e-20 Score=181.75 Aligned_cols=112 Identities=25% Similarity=0.355 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 139 ~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~~ti 215 (267)
T PRK14235 139 IVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-NYTI 215 (267)
T ss_pred HHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 4677889999854211111 13467899999999999999999999999999999999999999999999986 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. .+.+.+|++++|++|+++..|+++++.
T Consensus 216 iivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 216 VIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 778899999999999999999987764
No 189
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.3e-20 Score=199.09 Aligned_cols=108 Identities=22% Similarity=0.308 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 125 ~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~ti 198 (510)
T PRK09700 125 RAAMMLLRVGLKVDLDE-----KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR-KEGTAI 198 (510)
T ss_pred HHHHHHHHcCCCCCccc-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 56788999999877765 456799999999999999999999999999999999999999999999997 459999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 199 iivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 199 VYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999975 78889999999999999999998765
No 190
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.2e-20 Score=179.60 Aligned_cols=112 Identities=22% Similarity=0.346 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+....... ..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~ti 200 (252)
T PRK14256 124 IVESSLKRVALWDEVKDRLK-SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-E-KYTI 200 (252)
T ss_pred HHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-h-CCcE
Confidence 46778888898542111111 2467899999999999999999999999999999999999999999999996 4 5899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.||++++|++|+++..|+++++.
T Consensus 201 iivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 201 IIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788999999999999999999987764
No 191
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=5.8e-20 Score=198.59 Aligned_cols=111 Identities=22% Similarity=0.410 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCcc-----cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHh
Q psy16346 3 YVDHIINVLDLAN-----CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77 (494)
Q Consensus 3 ~v~~~l~~l~L~~-----~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~ 77 (494)
+++++++.+||.+ ..++ .+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 402 ~~~~~l~~~~l~~~~~~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 402 KAVITLKMVGFDEEKAEEILDK-----YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred HHHHHHHhCCCCCccchhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 5678899999965 2343 56789999999999999999999999999999999999999999999999855
Q ss_pred cCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 78 ~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|.|||+++|++. .+.++||++++|++|+++..|+++++.+
T Consensus 477 ~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 477 MEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred cCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 6899999999975 7889999999999999999999887653
No 192
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=4.3e-20 Score=162.98 Aligned_cols=107 Identities=27% Similarity=0.448 Sum_probs=98.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.+..++++.|.|...+|. ++-.|||||+|||+|||||+.+|.++++||||+.|||+-..+++++||+++ ..|.|
T Consensus 120 ~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgit 193 (242)
T COG4161 120 ARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGIT 193 (242)
T ss_pred HHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCce
Confidence 457789999999999885 577899999999999999999999999999999999999999999999998 78999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTN 115 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~ 115 (494)
=++++|... ...+.+.||+.|.+|+|+..|+.+
T Consensus 194 qvivthev~-va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 194 QVIVTHEVE-VARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred EEEEEeehh-HHHhhhhheEeeecCeeEeecchh
Confidence 999999964 667889999999999999999864
No 193
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.82 E-value=5.1e-20 Score=198.40 Aligned_cols=110 Identities=19% Similarity=0.337 Sum_probs=99.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+..++ .+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|
T Consensus 119 ~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~t 192 (510)
T PRK15439 119 QKMKQLLAALGCQLDLDS-----SAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL-AQGVG 192 (510)
T ss_pred HHHHHHHHHcCCCccccC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCE
Confidence 357889999999877765 456799999999999999999999999999999999999999999999997 45999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.||++++|++|++++.|++++..
T Consensus 193 iiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 193 IVFISHKLP-EIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHcC
Confidence 999999975 788999999999999999999987653
No 194
>PRK10908 cell division protein FtsE; Provisional
Probab=99.82 E-value=5.8e-20 Score=176.82 Aligned_cols=100 Identities=27% Similarity=0.449 Sum_probs=90.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+..||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++ +.|.|+
T Consensus 117 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 190 (222)
T PRK10908 117 RVSAALDKVGLLDKAKN-----FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN-RVGVTV 190 (222)
T ss_pred HHHHHHHHcCChhhhhC-----CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 46788999999876664 456899999999999999999999999999999999999999999999997 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEe
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTA 109 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~ 109 (494)
|+++|++. ++.+.+|++++|++|+++
T Consensus 191 ii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 191 LMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 99999975 778899999999999974
No 195
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8e-20 Score=179.19 Aligned_cols=111 Identities=25% Similarity=0.356 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||.+ +.+ .. +..+++||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ + ++|
T Consensus 123 ~~~~~l~~~~l~~~~~~-~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~-~-~~t 198 (251)
T PRK14270 123 IVEWALKKAALWDEVKD-DL-KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-K-EYT 198 (251)
T ss_pred HHHHHHHHcCCchhhhh-Hh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCe
Confidence 4567888888742 111 11 13567899999999999999999999999999999999999999999999986 4 589
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+|+++|++. ++.+.+||+++|++|++++.|+++++.
T Consensus 199 iiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 199 IVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999975 788999999999999999999988764
No 196
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.7e-20 Score=178.69 Aligned_cols=112 Identities=26% Similarity=0.356 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++++.++.+|+.+...... +....+||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 121 ~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~ti 197 (249)
T PRK14253 121 VVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK-K-NYTI 197 (249)
T ss_pred HHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 3556677777753211111 23467899999999999999999999999999999999999999999999996 4 5899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 198 i~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 198 VIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788999999999999999999987653
No 197
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.82 E-value=8e-20 Score=177.58 Aligned_cols=91 Identities=29% Similarity=0.567 Sum_probs=83.9
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.+++||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ + |+|||+++|++. ++ ..+|++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLS-TV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 567899999999999999999999999999999999999999999999986 4 899999999986 55 5699999999
Q ss_pred CCeEeEeCChhhHHH
Q psy16346 105 NGQTAYFGDTNKVVD 119 (494)
Q Consensus 105 ~G~~~~~G~~~~~~~ 119 (494)
+|++++.|+++++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887653
No 198
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.9e-20 Score=180.21 Aligned_cols=112 Identities=22% Similarity=0.325 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.++|.+..+... +..+++||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++. + +.||
T Consensus 139 ~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 215 (267)
T PRK14237 139 IVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTI 215 (267)
T ss_pred HHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 4567788888854322222 23578899999999999999999999999999999999999999999999985 4 7899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 216 ii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 216 IIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999976 788999999999999999999988764
No 199
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.5e-20 Score=185.52 Aligned_cols=111 Identities=23% Similarity=0.368 Sum_probs=97.6
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
+++.++..+|.+..++.++. ....||||||||++||||++.+|++++|||||+|||+.+...+.+.|++++ + ++|+|
T Consensus 202 ~~~~l~~~~L~~~l~~~~~~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~-~~Tii 278 (329)
T PRK14257 202 VEKSLKSAALWDEVKDDLDK-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-K-KYSII 278 (329)
T ss_pred HHHHHHHcCCcchhhhhhhC-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEE
Confidence 56678888875444444543 578899999999999999999999999999999999999999999999986 4 69999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+++|++. .+.+.+||+++|++|+++..|+++++.
T Consensus 279 ~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 279 IVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred EEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999975 778889999999999999999999875
No 200
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5.3e-20 Score=198.22 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.||
T Consensus 123 ~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tv 196 (506)
T PRK13549 123 RAQKLLAQLKLDINPATP-----VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIAC 196 (506)
T ss_pred HHHHHHHHcCCCCCcccc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 578899999998777754 56799999999999999999999999999999999999999999999997 568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 197 i~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 197 IYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred EEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 99999975 78889999999999999999998765
No 201
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-19 Score=178.69 Aligned_cols=109 Identities=18% Similarity=0.323 Sum_probs=97.8
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
++++++.++|.+..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++ +.|+|+|
T Consensus 124 ~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiI 197 (264)
T PRK13546 124 TPKIIEFSELGEFIYQ-----PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIF 197 (264)
T ss_pred HHHHHHHcCCchhhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEE
Confidence 4567888888776664 456899999999999999999999999999999999999999999999986 5699999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+++|++. ++.+.+|++++|++|+++..|+++++.+
T Consensus 198 iisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 198 FVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred EEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 9999975 7788999999999999999999887764
No 202
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.82 E-value=5e-20 Score=198.16 Aligned_cols=108 Identities=23% Similarity=0.371 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..|.. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.||
T Consensus 121 ~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tv 194 (501)
T PRK10762 121 EADKLLARLNLRFSSDKL-----VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK-SQGRGI 194 (501)
T ss_pred HHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 577889999998877654 56799999999999999999999999999999999999999999999997 558999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.||++++|++|+++..|+++++
T Consensus 195 ii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 195 VYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999975 78899999999999999999988764
No 203
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.8e-20 Score=180.34 Aligned_cols=112 Identities=23% Similarity=0.355 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++++.++.+++.+..... -+..++.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 140 ~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 216 (268)
T PRK14248 140 IVEESLTKAALWDEVKDR-LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-E-EYSI 216 (268)
T ss_pred HHHHHHHHcCCCcchHHH-HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-CCEE
Confidence 355667777774211111 123567899999999999999999999999999999999999999999999986 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+||+++|++|++++.|+++++.
T Consensus 217 ii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 217 IIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788899999999999999999987764
No 204
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.6e-20 Score=178.50 Aligned_cols=113 Identities=27% Similarity=0.406 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.+++.++.+|+.+..+.. .+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|+
T Consensus 122 ~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~ti 198 (250)
T PRK14262 122 IVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTI 198 (250)
T ss_pred HHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEE
Confidence 356678888885421111 234567899999999999999999999999999999999999999999999986 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.+
T Consensus 199 li~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 199 VIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999975 6888999999999999999999887653
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.2e-20 Score=202.60 Aligned_cols=111 Identities=21% Similarity=0.385 Sum_probs=99.4
Q ss_pred hHHHHHHHHcCCcc---cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 2 TYVDHIINVLDLAN---CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 2 ~~v~~~l~~l~L~~---~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
++++++++.+||.+ ..+ .++.+|||||||||.||++|+.+|++|+|||||+|||+.++.++.+.+++++++.
T Consensus 144 ~~~~~~l~~~gL~~~~~~~~-----~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~ 218 (623)
T PRK10261 144 VEAKRMLDQVRIPEAQTILS-----RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM 218 (623)
T ss_pred HHHHHHHHHCCCCChhhHHh-----CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc
Confidence 46788999999953 234 3567899999999999999999999999999999999999999999999998656
Q ss_pred CcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|.|||+++|++. .+.++|||+++|++|+++..|+++++.
T Consensus 219 g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 219 SMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred CCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 999999999975 788999999999999999999987764
No 206
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5.6e-20 Score=198.01 Aligned_cols=108 Identities=24% Similarity=0.412 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||+ +..++ .++.|||||||||.||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|
T Consensus 384 ~~~~~l~~~~l~~~~~~~-----~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~t 457 (506)
T PRK13549 384 TILESIQRLKVKTASPEL-----AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV-QQGVA 457 (506)
T ss_pred HHHHHHHhcCccCCCccc-----ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH-HCCCE
Confidence 578899999996 45665 456799999999999999999999999999999999999999999999998 45999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 458 vi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 458 IIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999975 78899999999999999999988765
No 207
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.9e-20 Score=180.68 Aligned_cols=112 Identities=26% Similarity=0.370 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|+
T Consensus 144 ~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~ti 220 (272)
T PRK14236 144 AVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-KYTI 220 (272)
T ss_pred HHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCeE
Confidence 4677788888853211111 23567899999999999999999999999999999999999999999999996 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 221 iivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 221 VIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999975 678899999999999999999987664
No 208
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=6.8e-20 Score=176.34 Aligned_cols=112 Identities=28% Similarity=0.395 Sum_probs=103.0
Q ss_pred hHHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++.++|+.+||.+ ..+ +++.++|||||||+.|||||+.+|+++++|||+|.||...+.+++++++++.++.|.
T Consensus 87 ~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~l 161 (268)
T COG4608 87 ERVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGL 161 (268)
T ss_pred HHHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCC
Confidence 46889999999854 333 478999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|.++++||.+ .+..++||+.+|..|+++..|+.+++..
T Consensus 162 t~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 162 TYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred eEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999975 7889999999999999999999988864
No 209
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.3e-19 Score=178.48 Aligned_cols=112 Identities=26% Similarity=0.396 Sum_probs=94.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+...... +..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 124 ~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tv 200 (258)
T PRK14241 124 LVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTI 200 (258)
T ss_pred HHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 4677888888842111111 13467899999999999999999999999999999999999999999999986 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEe------CCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLC------NGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~------~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|+ +|++++.|+++++.
T Consensus 201 iivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 201 VIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 99999975 7888999999997 79999999988764
No 210
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.81 E-value=6.8e-20 Score=197.45 Aligned_cols=108 Identities=24% Similarity=0.384 Sum_probs=97.6
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||+ +..++ .++.||||||||+.||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|
T Consensus 382 ~~~~~l~~~~l~~~~~~~-----~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~t 455 (510)
T PRK15439 382 VLERYRRALNIKFNHAEQ-----AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVA 455 (510)
T ss_pred HHHHHHHHcCCCCCCccC-----ccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCE
Confidence 467889999996 56665 4567999999999999999999999999999999999999999999999984 5899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 456 iIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 456 VLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999975 78899999999999999999987654
No 211
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=177.23 Aligned_cols=112 Identities=29% Similarity=0.429 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++.+...... +..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. + ++||
T Consensus 122 ~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~ti 198 (250)
T PRK14240 122 IVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTI 198 (250)
T ss_pred HHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 4566777777642111111 23467899999999999999999999999999999999999999999999985 4 7899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 199 ii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 199 VIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788899999999999999999987764
No 212
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=6.9e-20 Score=174.51 Aligned_cols=115 Identities=34% Similarity=0.507 Sum_probs=106.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++.+.+.+.|+|+...+. +++.||-|||.|+.+|.+|+++|+++||||||-|||-.++..+.+.+++..++.+.|
T Consensus 135 ~r~~~l~eiLdl~~~lk~-----~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aT 209 (325)
T COG4586 135 ERLDFLTEILDLEGFLKW-----PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT 209 (325)
T ss_pred HHHHHHHHHhcchhhhhh-----hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCce
Confidence 577888999999877665 467899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~ 122 (494)
|+.|||+.. ++..+||||+++++|+++|.|+.+++.+.|.
T Consensus 210 VllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 210 VLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred EEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999965 8999999999999999999999999886553
No 213
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=178.35 Aligned_cols=112 Identities=26% Similarity=0.351 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..+...+ ...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ + ++|+
T Consensus 125 ~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~ti 201 (261)
T PRK14263 125 RVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTI 201 (261)
T ss_pred HHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 56788899998653322222 3567899999999999999999999999999999999999999999999985 4 7899
Q ss_pred EEEecCcchHHHhccCeEEEEe--------CCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLC--------NGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~--------~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+||+++|+ +|+++..|+++++.
T Consensus 202 i~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 202 ALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 99999975 6889999999996 89999999988764
No 214
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=177.37 Aligned_cols=112 Identities=26% Similarity=0.355 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+...... +..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.||
T Consensus 123 ~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~ti 199 (251)
T PRK14251 123 RVEESLKQAAIWKETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTF 199 (251)
T ss_pred HHHHHHHHcCCCcchHHHh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeE
Confidence 4667788888843211111 23567899999999999999999999999999999999999999999999985 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 200 iiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 200 IMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788899999999999999999987764
No 215
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=194.68 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=98.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+..++ .+.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.||
T Consensus 114 ~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tv 187 (491)
T PRK10982 114 DTKAIFDELDIDIDPRA-----KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGI 187 (491)
T ss_pred HHHHHHHHcCCCCCccC-----chhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 57788999999876665 456799999999999999999999999999999999999999999999997 569999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.||++++|++|+++..|++++.
T Consensus 188 ii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 188 VYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999975 78889999999999999999997664
No 216
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.8e-19 Score=179.20 Aligned_cols=112 Identities=25% Similarity=0.350 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++... ..++.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.||
T Consensus 139 ~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~ti 215 (276)
T PRK14271 139 VAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-D-RLTV 215 (276)
T ss_pred HHHHHHHHcCCCchhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 34667888898654322221 3467899999999999999999999999999999999999999999999986 4 4899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 216 iivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 216 IIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788999999999999999999988774
No 217
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.8e-19 Score=176.63 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=93.8
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
+++.++.+||.+..... .+..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. + |+|||
T Consensus 124 ~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~til 200 (251)
T PRK14249 124 VEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIA 200 (251)
T ss_pred HHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEE
Confidence 45566677764321111 123567899999999999999999999999999999999999999999999984 3 79999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 201 ivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 201 IVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999975 788899999999999999999988764
No 218
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.8e-19 Score=178.49 Aligned_cols=113 Identities=23% Similarity=0.367 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++........ +..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 130 ~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~ti 206 (269)
T PRK14259 130 LVERSLRKAAVWDECKDKL-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTI 206 (269)
T ss_pred HHHHHHHHhCCcchhhhhh-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 4566788887642111111 23567899999999999999999999999999999999999999999999985 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeC-----------CeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN-----------GQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~-----------G~~~~~G~~~~~~~ 119 (494)
|+++|++. ++.+.||++++|++ |++++.|+++++.+
T Consensus 207 iivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 207 VIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 99999975 78899999999996 67899999988753
No 219
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.1e-20 Score=196.14 Aligned_cols=108 Identities=22% Similarity=0.368 Sum_probs=97.6
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+|+. +..++. +..|||||||||.||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.|
T Consensus 375 ~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~t 448 (501)
T PRK11288 375 NADRFIRSLNIKTPSREQL-----IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQGVA 448 (501)
T ss_pred HHHHHHHhcCcccCCccCc-----cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH-hCCCE
Confidence 467889999994 566654 56799999999999999999999999999999999999999999999997 56999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 449 viivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 449 VLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999975 78899999999999999999988754
No 220
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.81 E-value=1.1e-19 Score=174.45 Aligned_cols=106 Identities=26% Similarity=0.490 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCccccccccc------CccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIG------DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg------~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
.++++++.+++++..+.... .....+||||||||+.||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus 109 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~- 187 (220)
T cd03245 109 RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL- 187 (220)
T ss_pred HHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence 46678888898876665431 11356899999999999999999999999999999999999999999999986
Q ss_pred hcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 77 ~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
+ ++|||+++|++. .. +.+|+++++++|++++.|
T Consensus 188 ~-~~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 188 G-DKTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred C-CCEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 4 389999999975 44 799999999999998764
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.7e-19 Score=180.23 Aligned_cols=108 Identities=25% Similarity=0.364 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCc----ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLA----NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
+++++++.+|+. +..+ ..+..||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ .
T Consensus 158 ~~~~~l~~~~l~~~l~~~~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~- 230 (286)
T PRK14275 158 IVEKSLRKAALWDEVSDRLD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-G- 230 (286)
T ss_pred HHHHHHHHhCCccchhhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-
Confidence 355677777774 2223 3467899999999999999999999999999999999999999999999986 4
Q ss_pred CcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
++|||+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 231 ~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 231 SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 689999999975 778899999999999999999988764
No 222
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.1e-19 Score=176.23 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=92.2
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
++++++.+++.+..... -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|+|
T Consensus 125 ~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii 201 (252)
T PRK14272 125 AERSLRGAALWDEVKDR-LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTII 201 (252)
T ss_pred HHHHHHHcCcchhhhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEE
Confidence 34455566653211111 123467899999999999999999999999999999999999999999999986 4 69999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 202 i~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 202 IVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999975 788899999999999999999988764
No 223
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=177.20 Aligned_cols=112 Identities=26% Similarity=0.336 Sum_probs=94.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++.+...+.. +...++||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 125 ~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~-~-~~tv 201 (253)
T PRK14261 125 IVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK-K-EYTV 201 (253)
T ss_pred HHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-h-CceE
Confidence 4566777777743211111 23567899999999999999999999999999999999999999999999986 4 5899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+++++.
T Consensus 202 ii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 202 IIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999975 678899999999999999999987764
No 224
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.81 E-value=1.9e-19 Score=170.61 Aligned_cols=93 Identities=34% Similarity=0.503 Sum_probs=83.7
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHh-ccCeEEEEeC
Q psy16346 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH-MFDKLLLLCN 105 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~-~~d~v~ll~~ 105 (494)
++||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ ++|+|+|+++|++. .+.+ .+|++++|++
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~-~~~~tiii~sh~~~-~~~~~~~d~i~~l~~ 180 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQR-LLDYIKPDRVHVLYD 180 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEecCHH-HHHHhhCCEEEEEEC
Confidence 5899999999999999999999999999999999999999999999997 45899999999986 5666 7999999999
Q ss_pred CeEeEeCChhhHHHHHH
Q psy16346 106 GQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 106 G~~~~~G~~~~~~~~f~ 122 (494)
|+++..|+. ++.+++.
T Consensus 181 G~i~~~~~~-~~~~~~~ 196 (200)
T cd03217 181 GRIVKSGDK-ELALEIE 196 (200)
T ss_pred CEEEEEccH-HHHhhhc
Confidence 999999954 4555554
No 225
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.3e-20 Score=168.17 Aligned_cols=112 Identities=30% Similarity=0.472 Sum_probs=105.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.+++.++.|+|++.+|. +..+||||||||.-||..++.+.+.++||||.++||-..+.++|+.+++++++.|+|
T Consensus 114 ~~I~~aieyl~L~~l~dr-----yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Kt 188 (252)
T COG4604 114 RIINEAIEYLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT 188 (252)
T ss_pred HHHHHHHHHhcccchHHH-----hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCe
Confidence 468999999999998885 567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++.|+.. ..-.+.|.++-|++|+++..|+++++.+
T Consensus 189 iviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 189 IVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred EEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999999986 6778899999999999999999998874
No 226
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=195.13 Aligned_cols=105 Identities=22% Similarity=0.432 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||. +..++ .+++|||||||||.||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.|
T Consensus 388 ~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~t 461 (510)
T PRK09700 388 TAENQRELLALKCHSVNQ-----NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKV 461 (510)
T ss_pred HHHHHHHhcCCCCCCccC-----ccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHH-HCCCE
Confidence 467889999996 66665 456799999999999999999999999999999999999999999999997 46999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCCh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~ 114 (494)
||+++|++. ++.+.||++++|++|+++..++.
T Consensus 462 vi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 462 ILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 999999975 78899999999999999998876
No 227
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-19 Score=187.46 Aligned_cols=113 Identities=31% Similarity=0.478 Sum_probs=99.8
Q ss_pred hHHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+.+.++++..||++. .||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+..++++.+.+.
T Consensus 442 Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 442 EELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred HHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 345677888888754 3456776 47889999999999999999999999999999999999999999999987
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+ .|+|+|++||+... .+.||||++|++|+++.+|+.+++..
T Consensus 521 ~--~~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 521 A--EGKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred h--cCCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 6 48999999999864 68999999999999999999998875
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.9e-19 Score=176.43 Aligned_cols=112 Identities=24% Similarity=0.359 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++++.++.+||.+...... +...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |.||
T Consensus 122 ~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~ti 198 (250)
T PRK14266 122 RVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTI 198 (250)
T ss_pred HHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeE
Confidence 4667788888854321112 23567899999999999999999999999999999999999999999999985 4 7899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus 199 ii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 199 VIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred EEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999975 788999999999999999999988764
No 229
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.5e-19 Score=177.98 Aligned_cols=111 Identities=21% Similarity=0.294 Sum_probs=93.4
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
+++.++.+++.+...... +..+..||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++ + +.|||
T Consensus 138 ~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tii 214 (274)
T PRK14265 138 VEDSLRRAAIWEEVKDKL-KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTII 214 (274)
T ss_pred HHHHHHHcccchhhHHHh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEE
Confidence 455667777632111111 23567899999999999999999999999999999999999999999999986 4 68999
Q ss_pred EEecCcchHHHhccCeEEEEe---------CCeEeEeCChhhHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLC---------NGQTAYFGDTNKVV 118 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~---------~G~~~~~G~~~~~~ 118 (494)
+++|++. ++.+.+|++++|+ +|++++.|+++++.
T Consensus 215 i~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 215 MVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999975 7889999999998 89999999998874
No 230
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=194.80 Aligned_cols=108 Identities=23% Similarity=0.439 Sum_probs=97.7
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||. +..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.|
T Consensus 374 ~~~~~l~~~~l~~~~~~~-----~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~t 447 (501)
T PRK10762 374 AVSDFIRLFNIKTPSMEQ-----AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK-AEGLS 447 (501)
T ss_pred HHHHHHHhcCCCCCCccC-----chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH-HCCCE
Confidence 477889999994 55665 456799999999999999999999999999999999999999999999997 45999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
||+++|++. ++.+.||++++|++|+++..|+++++
T Consensus 448 viivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 448 IILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999975 78899999999999999999988765
No 231
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=189.28 Aligned_cols=113 Identities=30% Similarity=0.450 Sum_probs=99.9
Q ss_pred hHHHHHHHHcCCccc------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
+.+.++++.-||.+. .||.+|+ ..++|||||+|||++||||+++++++++||||++||.++...|.+.|.+++
T Consensus 425 e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~ 503 (559)
T COG4988 425 EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA 503 (559)
T ss_pred HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH
Confidence 456777888777544 3677886 578999999999999999999999999999999999999999999999998
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+ ++|+++++|++. ....+|+|++|++|+++..|+.+++.+
T Consensus 504 ~--~ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 504 K--QKTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred h--CCeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHhh
Confidence 3 599999999974 477899999999999999999988863
No 232
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=1.5e-19 Score=198.20 Aligned_cols=113 Identities=28% Similarity=0.412 Sum_probs=97.6
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+.+++.++..++.+ -.||.||+. ...||||||||++||||++++|++++||||||+||+.+...+.+.|+++
T Consensus 453 eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 34566666666543 347888874 5679999999999999999999999999999999999999999999988
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
. .++|+|+++|+++ ..+.+|++++|++|+++..|+.+++.+
T Consensus 532 ~--~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 532 S--RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred h--CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 5 4899999999984 467899999999999999999888763
No 233
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.3e-19 Score=173.97 Aligned_cols=91 Identities=32% Similarity=0.514 Sum_probs=83.4
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.+..||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||+++|++. ++.. ||++++|+
T Consensus 135 ~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~v~~l~ 210 (234)
T cd03251 135 RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIEN-ADRIVVLE 210 (234)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHhh-CCEEEEec
Confidence 467899999999999999999999999999999999999999999999986 4 899999999985 5654 99999999
Q ss_pred CCeEeEeCChhhHHH
Q psy16346 105 NGQTAYFGDTNKVVD 119 (494)
Q Consensus 105 ~G~~~~~G~~~~~~~ 119 (494)
+|+++..|+++++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (234)
T cd03251 211 DGKIVERGTHEELLA 225 (234)
T ss_pred CCeEeeeCCHHHHHH
Confidence 999999999877654
No 234
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.9e-19 Score=174.01 Aligned_cols=112 Identities=25% Similarity=0.358 Sum_probs=91.5
Q ss_pred HHHHHHHcCCcccccccc------cCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHh
Q psy16346 4 VDHIINVLDLANCQHTII------GDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~v------g~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~ 77 (494)
+++.++.+++++..+... -+..+++||||||||+.||++|+.+|++++|||||+|||+.++..+.+.+++++ +
T Consensus 109 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~ 187 (229)
T cd03254 109 VIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K 187 (229)
T ss_pred HHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C
Confidence 444555556554333211 112467899999999999999999999999999999999999999999999985 4
Q ss_pred cCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 78 ~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+|||+++|++. ++ ..+|++++|++|++++.|+.++..+
T Consensus 188 -~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 188 -GRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred -CCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 899999999985 55 4699999999999999998776653
No 235
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=1.7e-19 Score=194.09 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..+. ..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.||
T Consensus 120 ~~~~~l~~~~l~~~~~~----~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tv 194 (500)
T TIGR02633 120 RAKNLLRELQLDADNVT----RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVAC 194 (500)
T ss_pred HHHHHHHHcCCCCCccc----CchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 57788999999765421 2356799999999999999999999999999999999999999999999997 569999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|+++|++. ++.+.||++++|++|+++..|++++.
T Consensus 195 iiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 195 VYISHKLN-EVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred EEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999975 78889999999999999999987653
No 236
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=9.9e-20 Score=170.91 Aligned_cols=114 Identities=25% Similarity=0.460 Sum_probs=105.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++.+|+.+++...... ++++||.|++|++.+..+++++|++++||||+|||||...+.+.+.+.+++ +.|.|
T Consensus 109 ~~~~~wLer~~i~~~~~~-----kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~Gat 182 (300)
T COG4152 109 KKLQAWLERLEIVGKKTK-----KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGAT 182 (300)
T ss_pred HHHHHHHHhccccccccc-----hHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCE
Confidence 467889999999887765 457899999999999999999999999999999999999999999999997 77999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~ 122 (494)
||+++|.+ +.+.++||++++|++|+.|.+|+.+++.+-|.
T Consensus 183 IifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 183 IIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred EEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999996 58999999999999999999999999997553
No 237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=3.1e-19 Score=174.40 Aligned_cols=109 Identities=26% Similarity=0.325 Sum_probs=92.7
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
.+++++.+||.+..++ .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||
T Consensus 96 ~~~~l~~l~l~~~~~~-----~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 170 (246)
T cd03237 96 KTEIAKPLQIEQILDR-----EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAF 170 (246)
T ss_pred HHHHHHHcCCHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 5678899999876665 45679999999999999999999999999999999999999999999999866689999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEe--EeCChhhHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTA--YFGDTNKVV 118 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~--~~G~~~~~~ 118 (494)
+++|++. .+..++|++++|+++..+ ..+++.++.
T Consensus 171 ivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 171 VVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999975 778899999999764333 445555433
No 238
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.5e-19 Score=176.52 Aligned_cols=112 Identities=26% Similarity=0.331 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+..... -+..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 126 ~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 202 (259)
T PRK14260 126 IVESALKGAALWQEVKDK-LNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-ELTI 202 (259)
T ss_pred HHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 456778888874211111 123567899999999999999999999999999999999999999999999986 4 5899
Q ss_pred EEEecCcchHHHhccCeEEEEe-----CCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLC-----NGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~-----~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|+ +|++++.|+++++.
T Consensus 203 ii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 203 AIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 99999975 7889999999998 49999999998864
No 239
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.3e-19 Score=174.86 Aligned_cols=111 Identities=26% Similarity=0.363 Sum_probs=92.3
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
+.+.++.+++........ +..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|+|
T Consensus 125 ~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii 201 (252)
T PRK14255 125 VETSLKQAAIWDEVKDHL-HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR-D-QYTII 201 (252)
T ss_pred HHHHHHHcCCccchhhHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH-h-CCEEE
Confidence 445566676632111111 23567899999999999999999999999999999999999999999999986 4 58999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+++|++. ++.+.+|++++|++|+++..|++.+..
T Consensus 202 ~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 202 LVTHSMH-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999975 788899999999999999999987764
No 240
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.8e-19 Score=176.64 Aligned_cols=112 Identities=22% Similarity=0.333 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++.+..+... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++||
T Consensus 127 ~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tv 203 (264)
T PRK14243 127 LVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK-E-QYTI 203 (264)
T ss_pred HHHHHHHHhCchhhHHHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 3455677777742111111 23567899999999999999999999999999999999999999999999996 4 5899
Q ss_pred EEEecCcchHHHhccCeEEEEe---------CCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLC---------NGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~---------~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.||++++|+ +|+++..|+++++.
T Consensus 204 i~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 204 IIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99999975 7899999999998 79999999988774
No 241
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.9e-19 Score=177.24 Aligned_cols=91 Identities=31% Similarity=0.487 Sum_probs=84.7
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||+++|++. ++.+.+|++++|+
T Consensus 164 ~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-K-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 567899999999999999999999999999999999999999999999986 4 689999999975 7788999999999
Q ss_pred CCeEeEeCChhhHH
Q psy16346 105 NGQTAYFGDTNKVV 118 (494)
Q Consensus 105 ~G~~~~~G~~~~~~ 118 (494)
+|+++..|+++++.
T Consensus 241 ~G~i~~~g~~~~~~ 254 (271)
T PRK14238 241 NGYVNEYDDTDKIF 254 (271)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987764
No 242
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=1.7e-19 Score=160.76 Aligned_cols=102 Identities=25% Similarity=0.401 Sum_probs=93.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+...+.++.+||.+-.+. ++++|||||+|||+||||++..|+++|.||||.+||..+..+|.+.+-.+.++.|.|
T Consensus 125 ~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~T 199 (228)
T COG4181 125 AGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTT 199 (228)
T ss_pred HHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCce
Confidence 357788999999876553 688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAY 110 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~ 110 (494)
.+++|||| .+...|||.+-|.+|+++.
T Consensus 200 lVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 200 LVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred EEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999998 5788999999999999874
No 243
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.80 E-value=2.3e-19 Score=174.45 Aligned_cols=92 Identities=37% Similarity=0.507 Sum_probs=84.1
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ .|+|||+++|++. ++. .||++++|+
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~~l~ 211 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIAVLQ 211 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEEEEE
Confidence 467899999999999999999999999999999999999999999999985 5899999999975 554 899999999
Q ss_pred CCeEeEeCChhhHHHH
Q psy16346 105 NGQTAYFGDTNKVVDF 120 (494)
Q Consensus 105 ~G~~~~~G~~~~~~~~ 120 (494)
+|++++.|+.+++.+.
T Consensus 212 ~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 212 NGQVVEQGTHDELMAQ 227 (238)
T ss_pred CCEEEEeCCHHHHhhc
Confidence 9999999998776543
No 244
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.80 E-value=3.1e-19 Score=177.02 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCcccccccccC------ccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIGD------YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
.+.+.++.+||.+..+..++. .....||||||||+++||+++.+|++++|||||+|||+.+...+.+.|++..
T Consensus 107 ~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~- 185 (275)
T cd03289 107 EIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF- 185 (275)
T ss_pred HHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-
Confidence 466788889997665544321 1235699999999999999999999999999999999999999999999874
Q ss_pred hcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 77 ~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.++|||+++|++. .+. .+||+++|++|++++.|+++++.+
T Consensus 186 -~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 186 -ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred -CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 4899999999984 555 599999999999999999999875
No 245
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.80 E-value=2.8e-19 Score=171.92 Aligned_cols=100 Identities=27% Similarity=0.512 Sum_probs=90.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .++.||||||||+.||++++.+|++++|||||+|||+.++..+.+.|++++++.|+|+
T Consensus 121 ~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 195 (220)
T TIGR02982 121 RARAMLEAVGLGDHLDY-----YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTI 195 (220)
T ss_pred HHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 57889999999877665 3568999999999999999999999999999999999999999999999975568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEe
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTA 109 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~ 109 (494)
|+++|++. +.+.+|++++|++|+++
T Consensus 196 i~~sh~~~--~~~~~d~v~~l~~g~~~ 220 (220)
T TIGR02982 196 LIVTHDNR--ILDVADRIVHMEDGKLL 220 (220)
T ss_pred EEEeCCHH--HHhhCCEEEEEECCEEC
Confidence 99999974 46899999999999863
No 246
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.8e-19 Score=175.05 Aligned_cols=112 Identities=25% Similarity=0.410 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+...... +..++.||||||||++||++++.+|++++|||||+|||..++..+.+.+++++ + +.||
T Consensus 129 ~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~ti 205 (257)
T PRK14246 129 IVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAI 205 (257)
T ss_pred HHHHHHHHcCCCccchhhh-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEE
Confidence 4677888899864211111 12467899999999999999999999999999999999999999999999986 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. .+.+.||++++|++|+++..|+++++.
T Consensus 206 ilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 206 VIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999975 777899999999999999999988765
No 247
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=2.1e-19 Score=213.91 Aligned_cols=113 Identities=27% Similarity=0.448 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++.+|+. +++||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+||
T Consensus 2050 ~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~TI 2123 (2272)
T TIGR01257 2050 VANWSIQSLGLSLYADRL-----AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAV 2123 (2272)
T ss_pred HHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 567889999999888865 467999999999999999999999999999999999999999999999974 59999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~ 122 (494)
|+++|++. ++..+|||+++|++|++++.|+++++.+.|.
T Consensus 2124 ILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2124 VLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999975 8899999999999999999999999987664
No 248
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.1e-19 Score=177.37 Aligned_cols=112 Identities=29% Similarity=0.418 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+...... +..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.||
T Consensus 156 ~~~~~l~~~~l~~~i~~~~-~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-~-~~ti 232 (285)
T PRK14254 156 RVEESLRRAALWDEVKDQL-DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-E-EYTV 232 (285)
T ss_pred HHHHHHHHcCCCchhHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 5677888888853211111 13467899999999999999999999999999999999999999999999997 3 4799
Q ss_pred EEEecCcchHHHhccCeEE-EEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLL-LLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~-ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+++||++ +|++|+++..|+++++.
T Consensus 233 ii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 233 VIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999975 7788999975 67999999999987764
No 249
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.4e-19 Score=178.82 Aligned_cols=112 Identities=30% Similarity=0.435 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++.+...+.. +..+++||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++ + +.|+
T Consensus 176 ~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~-~-~~ti 252 (305)
T PRK14264 176 LVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA-E-EYTV 252 (305)
T ss_pred HHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEE
Confidence 4667788888743222222 23568899999999999999999999999999999999999999999999997 4 4899
Q ss_pred EEEecCcchHHHhccCeE-EEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKL-LLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v-~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. .+.+++|++ ++|++|++++.|+++++.
T Consensus 253 iivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 253 VVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 99999975 778899996 578999999999987764
No 250
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=6.2e-19 Score=170.19 Aligned_cols=100 Identities=28% Similarity=0.395 Sum_probs=88.0
Q ss_pred HHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCC--CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 5 DHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 5 ~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.+.++.+||.+ ..+. .+.+||||||||++||++|+.+| +++++||||+|||+.++..+.+.+++++ +.|.|
T Consensus 118 ~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~-~~g~t 191 (226)
T cd03270 118 LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR-DLGNT 191 (226)
T ss_pred HHHHHHCCCCcccccC-----ccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-hCCCE
Confidence 45788888865 3443 56789999999999999999998 5999999999999999999999999997 56999
Q ss_pred EEEEecCcchHHHhccCeEEEE------eCCeEeEeC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFG 112 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G 112 (494)
+|+++|++. .+ +.||++++| ++|+++++|
T Consensus 192 ii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 192 VLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 999999975 44 699999999 999999886
No 251
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.79 E-value=2.4e-19 Score=178.71 Aligned_cols=114 Identities=22% Similarity=0.417 Sum_probs=102.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++-++|+..|+.+-... + +.++.+|||||||||.||.||+++|++|+.||||+.||-..+.+|++.|+++.++.|..
T Consensus 133 ~r~lelL~~VgI~~p~~r-l-~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa 210 (534)
T COG4172 133 ARALELLELVGIPEPEKR-L-DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMA 210 (534)
T ss_pred HHHHHHHHHcCCCchhhh-h-hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcE
Confidence 467788999998665432 2 34789999999999999999999999999999999999999999999999999899999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
++++|||.. -+-+++|||.+|.+|++++.|+.+++.
T Consensus 211 ~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 211 ILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred EEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 999999975 788999999999999999999987664
No 252
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.4e-19 Score=164.17 Aligned_cols=110 Identities=27% Similarity=0.391 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhh------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLT------NPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
.+++.|...++++.+.. ....|||||||||.+||.|+. ++++||||||||.||...+..+++..+++++
T Consensus 115 i~~~ala~~d~~~la~R-----~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~ 189 (259)
T COG4559 115 IAAQALAATDLSGLAGR-----DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189 (259)
T ss_pred HHHHHHHHcChhhhhcc-----chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh
Confidence 46788888898887764 467899999999999999974 4469999999999999999999999999995
Q ss_pred hcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 77 ~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|..|+++.||.+ -...++||+++|++||++..|+|+++++
T Consensus 190 -~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 190 -EGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred -cCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 5799999999987 6789999999999999999999998874
No 253
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.79 E-value=3.5e-19 Score=191.65 Aligned_cols=107 Identities=27% Similarity=0.442 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||++ ..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ +.|.|
T Consensus 382 ~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~t 455 (500)
T TIGR02633 382 IIGSAIQRLKVKTASPFL-----PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA-QEGVA 455 (500)
T ss_pred HHHHHHHhcCccCCCccC-----ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH-hCCCE
Confidence 5778999999964 4565 456799999999999999999999999999999999999999999999997 45999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~ 116 (494)
||+++|++. ++.++||++++|++|+++..++.++
T Consensus 456 viivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 456 IIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999975 7889999999999999998876543
No 254
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4.5e-19 Score=166.92 Aligned_cols=84 Identities=52% Similarity=0.909 Sum_probs=78.6
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC-C
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN-G 106 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~-G 106 (494)
+||||||||++||++++.+|+++++||||+|||+.++..+.+.+++++ +.|+|+|+++|++..++.+.+|++++|++ |
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHH-HcCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 799999999999999999999999999999999999999999999987 46899999999986457789999999998 9
Q ss_pred eEeEeC
Q psy16346 107 QTAYFG 112 (494)
Q Consensus 107 ~~~~~G 112 (494)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999876
No 255
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.79 E-value=6.1e-19 Score=193.24 Aligned_cols=113 Identities=25% Similarity=0.415 Sum_probs=98.3
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+.+++.++..|+.+ -.||.+|+. .+.||||||||++|||+|+++|++++||||||+||+.+...+.+.++++
T Consensus 448 ~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~ 526 (582)
T PRK11176 448 EQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 35667777777543 358888874 5789999999999999999999999999999999999999999999997
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
. .++|+|+++|+++ ..+.||+|++|++|+++..|+.+++.+
T Consensus 527 ~--~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 527 Q--KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred h--CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 5 3799999999984 577899999999999999999988763
No 256
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5e-19 Score=167.92 Aligned_cols=90 Identities=36% Similarity=0.662 Sum_probs=80.6
Q ss_pred CccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE
Q psy16346 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 23 ~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l 102 (494)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.+.|+++++|+..+++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 34567899999999999999999999999999999999999999999999997554678788777755688899999999
Q ss_pred EeCCeEeEeC
Q psy16346 103 LCNGQTAYFG 112 (494)
Q Consensus 103 l~~G~~~~~G 112 (494)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
No 257
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.79 E-value=5.5e-19 Score=166.61 Aligned_cols=84 Identities=61% Similarity=1.046 Sum_probs=78.9
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
.||||||||++||++|+.+|+++++||||+|||+.++..+.+.|++++ ++|+|+|+++|++..++.+.+|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999987 4599999999998656888999999999999
Q ss_pred EeEeC
Q psy16346 108 TAYFG 112 (494)
Q Consensus 108 ~~~~G 112 (494)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
No 258
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=5.9e-19 Score=196.84 Aligned_cols=111 Identities=29% Similarity=0.391 Sum_probs=96.5
Q ss_pred hHHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+.+.+.++..|+.+. .||.+|+. ...||||||||++||||++++|++++||||||+||+.+...+.+.++++
T Consensus 556 e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 556 DEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL 634 (686)
T ss_pred HHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 356677777777543 47888863 5789999999999999999999999999999999999999999999875
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 635 ----~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 635 ----KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred ----CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 579999999984 467799999999999999999988763
No 259
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6e-19 Score=189.80 Aligned_cols=105 Identities=23% Similarity=0.321 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+||
T Consensus 120 ~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~ti 193 (501)
T PRK11288 120 EAREQLEHLGVDIDPDT-----PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR-AEGRVI 193 (501)
T ss_pred HHHHHHHHcCCCCCcCC-----chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 57788999999866654 456799999999999999999999999999999999999999999999997 569999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCCh
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~ 114 (494)
|+++|++. ++.+.||++++|++|+++..++.
T Consensus 194 iiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 194 LYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999975 78889999999999999877653
No 260
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=6.7e-19 Score=192.36 Aligned_cols=113 Identities=31% Similarity=0.517 Sum_probs=99.9
Q ss_pred hHHHHHHHHcCCccc------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
+.+++.++..|+.+. .||.+|+ ....||||||||++|||+++++|++++|||||++||+.+...+.+.++++.
T Consensus 444 ~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~ 522 (574)
T PRK11160 444 EALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA 522 (574)
T ss_pred HHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 457788888888754 4688886 367899999999999999999999999999999999999999999999985
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+++|+|+++|+++ . ...+|++++|++|+++..|+.+++.+
T Consensus 523 --~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 523 --QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred --CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 4899999999985 3 46799999999999999999888763
No 261
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.79 E-value=3.6e-19 Score=195.59 Aligned_cols=101 Identities=29% Similarity=0.490 Sum_probs=92.6
Q ss_pred ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHH
Q psy16346 15 NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIF 94 (494)
Q Consensus 15 ~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~ 94 (494)
.-.||.||+ ...+||||||||++|||+|+++|++++||||||+||+.+...+.+.|+++. .|+|+|+++|.++ ..
T Consensus 597 ~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~--ti 671 (709)
T COG2274 597 MGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS--TI 671 (709)
T ss_pred ccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch--Hh
Confidence 345788886 577899999999999999999999999999999999999999999999985 4899999999985 58
Q ss_pred hccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 95 HMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 95 ~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
+.+||+++|++|+++.+|+.+++.+.
T Consensus 672 ~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 672 RSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred hhccEEEEccCCceeccCCHHHHHHh
Confidence 89999999999999999999998863
No 262
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=8.4e-19 Score=170.24 Aligned_cols=91 Identities=37% Similarity=0.594 Sum_probs=83.0
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++ + |+|||+++|++. .+. .+|++++|+
T Consensus 134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~-~~d~~~~l~ 209 (236)
T cd03253 134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLS-TIV-NADKIIVLK 209 (236)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HHH-hCCEEEEEE
Confidence 467899999999999999999999999999999999999999999999986 5 899999999975 554 599999999
Q ss_pred CCeEeEeCChhhHHH
Q psy16346 105 NGQTAYFGDTNKVVD 119 (494)
Q Consensus 105 ~G~~~~~G~~~~~~~ 119 (494)
+|+++..|+.++..+
T Consensus 210 ~g~i~~~~~~~~~~~ 224 (236)
T cd03253 210 DGRIVERGTHEELLA 224 (236)
T ss_pred CCEEEeeCCHHHHhh
Confidence 999999998876653
No 263
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=172.41 Aligned_cols=112 Identities=27% Similarity=0.376 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++++.++.+++.+...... +.....||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|+
T Consensus 137 ~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-~~ti 213 (265)
T PRK14252 137 RVENALRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-N-KVTI 213 (265)
T ss_pred HHHHHHHHcCCchhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-h-CCEE
Confidence 4556677777642111111 23467899999999999999999999999999999999999999999999986 4 6899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.+|++++|++|+++..|+.+++.
T Consensus 214 iivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 214 LIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 788899999999999999999987764
No 264
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=1.4e-18 Score=170.38 Aligned_cols=104 Identities=33% Similarity=0.400 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhC---CCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTN---PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~---p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
++.++++.+||.+. .+. ....||||||||+.||++|+.+ |++++|||||+|||+.....+.+.++++. +.
T Consensus 148 ~~~~~L~~vgL~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~-~~ 221 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV-DK 221 (261)
T ss_pred HHHHHHHHcCCchhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH-hC
Confidence 46678889999763 443 4678999999999999999996 79999999999999999999999999997 56
Q ss_pred CcEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCCh
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDT 114 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~ 114 (494)
|.|+|+++|++. .+ +.+|+++.| ++|++++.|++
T Consensus 222 g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 222 GNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 899999999975 44 679999999 89999999974
No 265
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.78 E-value=1.2e-18 Score=166.76 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=94.4
Q ss_pred HHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q psy16346 7 IINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86 (494)
Q Consensus 7 ~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~ 86 (494)
+.+.++|+...++. ++++|||||||+++|++++.+|+++++||||+++|+.++..+.+.+.+..+ ++|+|+++
T Consensus 88 ~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vs 160 (213)
T PRK15177 88 CYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLT 160 (213)
T ss_pred HHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEE
Confidence 34556776666653 567999999999999999999999999999999999999999998866542 46899999
Q ss_pred cCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHHhc
Q psy16346 87 HQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNI 124 (494)
Q Consensus 87 H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~~~ 124 (494)
|++. ++...+|++++|++|++++.|+.++..++++..
T Consensus 161 H~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 161 HNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred CCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 9985 678899999999999999999999998776543
No 266
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1e-18 Score=163.73 Aligned_cols=110 Identities=24% Similarity=0.447 Sum_probs=96.7
Q ss_pred HHHHHHHcC-CcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 4 VDHIINVLD-LANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 4 v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++++.+.|- |.+.++++ ...|||||||.++|||||+++|++|+|||||.||-|.-..+|.+.+++++++.|.||
T Consensus 116 ~e~v~~lFP~Lker~~~~-----aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI 190 (237)
T COG0410 116 LEEVYELFPRLKERRNQR-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190 (237)
T ss_pred HHHHHHHChhHHHHhcCc-----ccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence 566666664 55555544 446999999999999999999999999999999999999999999999986668899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+++.++. ....+++||.++|.+|+++++|+.+++.+
T Consensus 191 lLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 191 LLVEQNA-RFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred EEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999985 47889999999999999999999988764
No 267
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=1.3e-18 Score=191.05 Aligned_cols=112 Identities=27% Similarity=0.374 Sum_probs=98.5
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
++++++++..|+.+ -.||.+|+ ....||||||||++|||+|+.+|++++|||||++||+.+...+.+.++++
T Consensus 444 ~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~ 522 (592)
T PRK10790 444 EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV 522 (592)
T ss_pred HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 45777888888764 24677876 45679999999999999999999999999999999999999999999998
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
. + ++|+|+++|+++ ....+|++++|++|+++..|+.+++.
T Consensus 523 ~-~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 523 R-E-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred h-C-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 3 699999999984 46679999999999999999999886
No 268
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.78 E-value=7.9e-19 Score=188.46 Aligned_cols=106 Identities=27% Similarity=0.485 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.++++++.+++. +..++ .+.+||||||||+.||++++.+|++++|||||+|||+.++..+.+.+++++ +.|.|
T Consensus 370 ~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~-~~~~t 443 (491)
T PRK10982 370 DTQWVIDSMRVKTPGHRT-----QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA-KKDKG 443 (491)
T ss_pred HHHHHHHhcCccCCCccc-----ccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH-HCCCE
Confidence 456788888885 34454 567899999999999999999999999999999999999999999999997 46999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTN 115 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~ 115 (494)
||+++|++. ++.++|||+++|++|+++..++++
T Consensus 444 vi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 444 IIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 999999975 788999999999999999887654
No 269
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.78 E-value=1.1e-18 Score=189.68 Aligned_cols=99 Identities=38% Similarity=0.644 Sum_probs=88.9
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 17 QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 17 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
.||.+|+ ....||||||||++|||+++++|++++|||||+|||+.++..+.+.++++. ..|+|+|+++|+++ ..+.
T Consensus 444 l~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~ith~~~--~~~~ 519 (544)
T TIGR01842 444 YDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRPS--LLGC 519 (544)
T ss_pred cccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHh-hCCCEEEEEeCCHH--HHHh
Confidence 3677776 467899999999999999999999999999999999999999999999985 45899999999985 4678
Q ss_pred cCeEEEEeCCeEeEeCChhhHHH
Q psy16346 97 FDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 97 ~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++++|++|++++.|+.+++.+
T Consensus 520 ~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 520 VDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999887653
No 270
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=1e-18 Score=160.16 Aligned_cols=81 Identities=30% Similarity=0.505 Sum_probs=76.0
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
+||||||||+++|++++.+|+++++||||+|||+.++..+.+.+++++ ++|.|+|+++|++. ++.+.+|++++|++|+
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~ 159 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIFISHRLD-EVFEIADRVTVLRDGR 159 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 499999999999999999999999999999999999999999999997 55899999999975 6788999999999999
Q ss_pred EeE
Q psy16346 108 TAY 110 (494)
Q Consensus 108 ~~~ 110 (494)
+++
T Consensus 160 i~~ 162 (163)
T cd03216 160 VVG 162 (163)
T ss_pred EEe
Confidence 875
No 271
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=1.4e-18 Score=171.11 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=83.0
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++. + +.|+|+++|++. .+. .+||+++|+
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~-~~dri~~l~ 228 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVS-TIL-DADLVLVLS 228 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChH-HHH-hCCEEEEEE
Confidence 467899999999999999999999999999999999999999999999874 3 899999999986 555 499999999
Q ss_pred CCeEeEeCChhhHHH
Q psy16346 105 NGQTAYFGDTNKVVD 119 (494)
Q Consensus 105 ~G~~~~~G~~~~~~~ 119 (494)
+|+++..|+++++.+
T Consensus 229 ~G~i~~~g~~~~~~~ 243 (257)
T cd03288 229 RGILVECDTPENLLA 243 (257)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999887654
No 272
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.78 E-value=8.4e-19 Score=208.82 Aligned_cols=112 Identities=21% Similarity=0.405 Sum_probs=102.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++.+|+. +++||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + |+|
T Consensus 1040 ~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~T 1112 (2272)
T TIGR01257 1040 LEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRT 1112 (2272)
T ss_pred HHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCE
Confidence 3578899999998877754 56799999999999999999999999999999999999999999999984 4 899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFF 121 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f 121 (494)
||+++|++. ++..++||+++|++|+++..|+++++.+.|
T Consensus 1113 IIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1113 IIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999975 788899999999999999999999988655
No 273
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.78 E-value=1e-18 Score=195.10 Aligned_cols=113 Identities=29% Similarity=0.546 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++.+.++..|+.+ -.||.+|+. ...||||||||++|||+++.+|++++||||||+||+.+...+.+.++++.
T Consensus 570 ~i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~ 648 (694)
T TIGR03375 570 EILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL 648 (694)
T ss_pred HHHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 4556666666543 357888863 57899999999999999999999999999999999999999999999985
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
.++|+|+++|+++ ..+.+|++++|++|++++.|+.+++++.
T Consensus 649 --~~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 649 --AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred --CCCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 3799999999985 4678999999999999999999988754
No 274
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.78 E-value=1e-18 Score=191.02 Aligned_cols=112 Identities=27% Similarity=0.442 Sum_probs=98.3
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
++++++++..|+.+ -.||.+|+. .+.||||||||++|||+++.+|++++|||||++||+.+...+.+.|++.
T Consensus 437 ~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 437 AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 35677788877753 257788864 5679999999999999999999999999999999999999999999987
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+ .++|+|++||++. ..+.||++++|++|+++..|+.+++.
T Consensus 516 ~--~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 516 M--QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred h--CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 5 3799999999984 57889999999999999999998875
No 275
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=1.3e-18 Score=194.80 Aligned_cols=111 Identities=24% Similarity=0.395 Sum_probs=95.9
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+.+.+.++..|+.+ -.||.+|+. ...||||||||++|||+++++|++++||||||+||+.+...+.+.+++
T Consensus 583 ~~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~- 660 (710)
T TIGR03796 583 ADLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR- 660 (710)
T ss_pred HHHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-
Confidence 34566677777654 347778763 578999999999999999999999999999999999999999999975
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.++|+|+++|+++ ....+|++++|++|+++..|+.+++.+
T Consensus 661 ---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 661 ---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 3799999999985 456799999999999999999998874
No 276
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.77 E-value=2.9e-18 Score=158.74 Aligned_cols=99 Identities=26% Similarity=0.383 Sum_probs=85.2
Q ss_pred HHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhC--CCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 6 HIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTN--PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 6 ~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~--p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+.++.++|... .+. .++.||||||||++||++++.+ |+++++||||+|||+.++..+.+.+++++ +.|+||
T Consensus 69 ~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tv 142 (176)
T cd03238 69 QFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI-DLGNTV 142 (176)
T ss_pred HHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 57888998653 443 4678999999999999999999 99999999999999999999999999986 479999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
|+++|++. .+ +.+|++++|.+|+..+.|
T Consensus 143 IivSH~~~-~~-~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 143 ILIEHNLD-VL-SSADWIIDFGPGSGKSGG 170 (176)
T ss_pred EEEeCCHH-HH-HhCCEEEEECCCCCCCCc
Confidence 99999975 44 689999999776554444
No 277
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.77 E-value=1.3e-18 Score=167.93 Aligned_cols=104 Identities=25% Similarity=0.310 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||. ...++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|.|
T Consensus 116 ~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 190 (225)
T PRK10247 116 IFLDDLERFALPDTILTK-----NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIA 190 (225)
T ss_pred HHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 567889999995 34454 467899999999999999999999999999999999999999999999997656899
Q ss_pred EEEEecCcchHHHhccCeEEEEe-CCeEeEeCC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLC-NGQTAYFGD 113 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~-~G~~~~~G~ 113 (494)
||+++|++. ++ ..+|++++|. ++..+.+|.
T Consensus 191 vii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 191 VLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 999999975 55 4699999995 566666654
No 278
>KOG0055|consensus
Probab=99.77 E-value=9.3e-19 Score=196.28 Aligned_cols=102 Identities=32% Similarity=0.528 Sum_probs=91.7
Q ss_pred CcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH
Q psy16346 13 LANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ 92 (494)
Q Consensus 13 L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~ 92 (494)
|.+-.||.+|+. ..+||||||||++|||+|+.+|+|||||||||+||+.+...+.+.|.+.. .|+|.|+++|+.+ .
T Consensus 475 lp~g~~T~vge~-g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLS-t 550 (1228)
T KOG0055|consen 475 LPDGYDTLVGER-GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLS-T 550 (1228)
T ss_pred hHHhhcccccCC-CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehh-h
Confidence 445578899984 34599999999999999999999999999999999999999999999875 4899999999986 4
Q ss_pred HHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 93 IFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 93 i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+. -+|+++++++|++++.|+.+|++.
T Consensus 551 Ir-naD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 551 IR-NADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred hh-ccCEEEEEECCEEEEecCHHHHHh
Confidence 55 499999999999999999999985
No 279
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.77 E-value=1.8e-18 Score=166.27 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCcccccc-------cccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHT-------IIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~-------~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++.+.++.+++.+..++ .. +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.
T Consensus 108 ~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 108 ELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 45666777777654332 11 23567899999999999999999999999999999999999999999999985
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCC
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~ 113 (494)
+ +.|||+++|++. ++. .+|++++|++|++++.|+
T Consensus 187 -~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 187 -K-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred -C-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 3 689999999985 554 599999999999999886
No 280
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.77 E-value=1.6e-18 Score=164.63 Aligned_cols=94 Identities=29% Similarity=0.453 Sum_probs=83.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|.|
T Consensus 113 ~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~t 186 (206)
T TIGR03608 113 EKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELN-DEGKT 186 (206)
T ss_pred HHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH-hcCCE
Confidence 3577889999998777654 56799999999999999999999999999999999999999999999997 45899
Q ss_pred EEEEecCcchHHHhccCeEEEE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLL 103 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll 103 (494)
+|+++|++. . .+.+|++++|
T Consensus 187 ii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 187 IIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred EEEEeCCHH-H-HhhcCEEEeC
Confidence 999999975 3 4689999875
No 281
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.77 E-value=2e-18 Score=188.51 Aligned_cols=99 Identities=33% Similarity=0.561 Sum_probs=90.0
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHh
Q psy16346 16 CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH 95 (494)
Q Consensus 16 ~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~ 95 (494)
-.||.||+ ....||||||||++|||+++.+|++++||||||.||+.+...+.+.++++. +|+|+++++|.++ .+ .
T Consensus 454 g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRls-ti-~ 528 (567)
T COG1132 454 GYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLS-TI-K 528 (567)
T ss_pred cccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHh-HH-H
Confidence 47899994 567899999999999999999999999999999999999999999999875 4689999999985 44 4
Q ss_pred ccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 96 MFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 96 ~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.+|+|++|++|++++.|+.+++..
T Consensus 529 ~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 529 NADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred hCCEEEEEECCEEEEecCHHHHHH
Confidence 599999999999999999999875
No 282
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=2.3e-18 Score=192.30 Aligned_cols=112 Identities=29% Similarity=0.482 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+.+.++..|+.+ -.||.+|+. .++||||||||++|||+++++|++++|||||++||+.+...+.+.++++.
T Consensus 562 ~i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 640 (694)
T TIGR01846 562 HVIHAAKLAGAHDFISELPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC 640 (694)
T ss_pred HHHHHHHHcChHHHHHhCcCccCcEecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 3455566666543 257888764 67899999999999999999999999999999999999999999999984
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|+++ . .+.+|++++|++|++++.|+.+++.+
T Consensus 641 --~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 641 --RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred --CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 4899999999985 3 46799999999999999999988764
No 283
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.7e-18 Score=163.57 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=96.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHh-cCc
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK-EGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~-~g~ 80 (494)
+++..+++.+|+++.+|.. ...||-|||||+-|||||+.+|.++|||||++|||...++.+++.+.+++.. .+.
T Consensus 150 ~~a~~lle~~g~~~la~r~-----~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~ 224 (257)
T COG1119 150 AAAQWLLELLGAKHLADRP-----FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAP 224 (257)
T ss_pred HHHHHHHHHcchhhhccCc-----hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCc
Confidence 4678899999999988864 4679999999999999999999999999999999999999999999999832 378
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCC
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~ 113 (494)
++|+++|++. |+-..+++++++++|+++++|.
T Consensus 225 ~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 225 ALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred eEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 9999999974 8999999999999999999884
No 284
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.77 E-value=1.6e-18 Score=185.97 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+||.+ ..++ .+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.+.|
T Consensus 380 ~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~t 454 (490)
T PRK10938 380 LAQQWLDILGIDKRTADA-----PFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQ 454 (490)
T ss_pred HHHHHHHHcCCchhhccC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcE
Confidence 5788999999986 6665 456799999999999999999999999999999999999999999999998543457
Q ss_pred EEEEecCcchHHHh-ccCeEEEEeCCeEeEeC
Q psy16346 82 VVVTVHQPSSQIFH-MFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 82 ii~~~H~p~~~i~~-~~d~v~ll~~G~~~~~G 112 (494)
||+++|++. ++.+ .+|++++|++|++++.-
T Consensus 455 viivsHd~~-~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 455 LLFVSHHAE-DAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred EEEEecchh-hhhhhhheeEEEecCCceEEee
Confidence 999999975 6666 58999999999987753
No 285
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.76 E-value=2.4e-18 Score=192.59 Aligned_cols=111 Identities=25% Similarity=0.431 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++.+.++..|+.+ -.||.+|+ ....||||||||++||||++++|++++|||||++||+.+...+.+.|+++
T Consensus 580 ~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~- 657 (708)
T TIGR01193 580 EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL- 657 (708)
T ss_pred HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-
Confidence 4566676666643 34788886 45789999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|+++ ..+.+|++++|++|+++..|+.+++.+
T Consensus 658 --~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 658 --QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred --cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 3789999999985 467899999999999999999988764
No 286
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=3.4e-18 Score=187.56 Aligned_cols=111 Identities=29% Similarity=0.471 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+.+.++..|+.+ -.||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.+...+.+.++++.
T Consensus 440 ~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~ 518 (588)
T PRK13657 440 EMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM 518 (588)
T ss_pred HHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 4556666666543 35777876 356799999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
.++|+|+++|+++ ..+.+|++++|++|+++..|+.+++.
T Consensus 519 --~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 519 --KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred --cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 3799999999984 46789999999999999999988775
No 287
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.76 E-value=3.1e-18 Score=187.53 Aligned_cols=98 Identities=28% Similarity=0.451 Sum_probs=87.6
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 17 QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 17 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
.||.+|+ ....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. .|+|+|+++|+++ . .+.
T Consensus 461 ~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~-~-~~~ 535 (585)
T TIGR01192 461 YDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLS-T-VRN 535 (585)
T ss_pred ccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChH-H-HHc
Confidence 3666765 467899999999999999999999999999999999999999999999874 4899999999984 4 467
Q ss_pred cCeEEEEeCCeEeEeCChhhHHH
Q psy16346 97 FDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 97 ~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++++|++|+++..|+.+++.+
T Consensus 536 ~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 536 ADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999887764
No 288
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.76 E-value=2.3e-18 Score=192.48 Aligned_cols=111 Identities=27% Similarity=0.427 Sum_probs=94.0
Q ss_pred hHHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+.+.++++..++.+. .||.+|+ ....||||||||++|||+++++|++++||||||+||+.+...+.+ . ..
T Consensus 585 e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~ 661 (711)
T TIGR00958 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RS 661 (711)
T ss_pred HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hc
Confidence 356667777776543 5788886 357899999999999999999999999999999999999999988 2 22
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
..++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 662 --~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 662 --RASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred --cCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 35899999999984 467899999999999999999988764
No 289
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.76 E-value=3.5e-18 Score=186.62 Aligned_cols=112 Identities=26% Similarity=0.506 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCc-------ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLA-------NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+++.++..++. +-.||.+|+ ....||||||||++|||+++++|++++|||||++||+.+...+.+.|+++.
T Consensus 420 ~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 498 (569)
T PRK10789 420 EIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498 (569)
T ss_pred HHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 455566666654 234777876 367899999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|+++ ..+.+|++++|++|+++..|+.+++.+
T Consensus 499 --~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 499 --EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred --CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 4899999999984 356799999999999999999887753
No 290
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2e-18 Score=159.77 Aligned_cols=78 Identities=38% Similarity=0.645 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
||||||||++||++|+.+|+++++||||+|||+.++..+.+.|+++++ +|.|+|+++|++. ++.+.+|++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999975 4899999999975 77889999999999874
No 291
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.76 E-value=2.4e-18 Score=166.05 Aligned_cols=96 Identities=31% Similarity=0.466 Sum_probs=82.6
Q ss_pred HHHHHHHc--CCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 4 VDHIINVL--DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 4 v~~~l~~l--~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++.+ |+++..+. .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ + ++|
T Consensus 129 ~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~t 201 (226)
T cd03248 129 AHSFISELASGYDTEVGE-----KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-E-RRT 201 (226)
T ss_pred cHHHHHhccccccchhhc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCE
Confidence 35567777 66655443 467899999999999999999999999999999999999999999999986 4 689
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
+|+++|++. ++. .+|++++|++|++
T Consensus 202 ii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 202 VLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred EEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999986 554 5999999999874
No 292
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=2e-18 Score=161.06 Aligned_cols=78 Identities=28% Similarity=0.569 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++ +.|+|+|+++|++. ++.+.+|++++|++|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999987 45899999999975 78899999999999974
No 293
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.76 E-value=3.3e-18 Score=158.99 Aligned_cols=83 Identities=39% Similarity=0.570 Sum_probs=76.6
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
+..||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++ + +.|+|+++|++. ++ ..+|++++|++
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~~~~l~~ 171 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLT-GI-EHMDKILFLEN 171 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 57899999999999999999999999999999999999999999999985 4 899999999986 55 47999999999
Q ss_pred CeEeEeC
Q psy16346 106 GQTAYFG 112 (494)
Q Consensus 106 G~~~~~G 112 (494)
|++++.|
T Consensus 172 g~i~~~~ 178 (178)
T cd03247 172 GKIIMQG 178 (178)
T ss_pred CEEEecC
Confidence 9998765
No 294
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.76 E-value=2.8e-18 Score=158.82 Aligned_cols=77 Identities=34% Similarity=0.607 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ +.|+|+|+++|++. .+ +.+|++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK-AAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999997 46899999999975 55 68999999999974
No 295
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.76 E-value=3.3e-18 Score=162.15 Aligned_cols=95 Identities=26% Similarity=0.341 Sum_probs=85.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.++++. +.|.|
T Consensus 104 ~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~t 177 (201)
T cd03231 104 EQVEEALARVGLNGFEDR-----PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGM 177 (201)
T ss_pred HHHHHHHHHcCChhhhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCE
Confidence 467889999999877665 356799999999999999999999999999999999999999999999986 46899
Q ss_pred EEEEecCcchHHHhccCeEEEE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLL 103 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll 103 (494)
+|+++|++. ++...+|+++++
T Consensus 178 iii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 178 VVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred EEEEecCch-hhhhccceeEec
Confidence 999999976 677899999887
No 296
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.76 E-value=3.9e-18 Score=167.40 Aligned_cols=103 Identities=25% Similarity=0.387 Sum_probs=90.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.++++++.+||++..++ .++.||||||||++||++++.+|+++++||||+|||+.++..+.+.+++++ +.|+|
T Consensus 118 ~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~~~~t 191 (255)
T cd03236 118 GKLDELVDQLELRHVLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA-EDDNY 191 (255)
T ss_pred HHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCE
Confidence 357889999999876664 456799999999999999999999999999999999999999999999997 45899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G 112 (494)
||+++|++. .+.+.+|++++| +|++.+.|
T Consensus 192 IIiiSHd~~-~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 192 VLVVEHDLA-VLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred EEEEECCHH-HHHHhCCEEEEE-CCCCCcce
Confidence 999999975 677789999999 56666543
No 297
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.5e-18 Score=158.90 Aligned_cols=78 Identities=35% Similarity=0.566 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|+|+|+++|++. ++.+.+|++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999998544899999999975 6778999999999885
No 298
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=5.3e-18 Score=161.44 Aligned_cols=86 Identities=22% Similarity=0.398 Sum_probs=78.8
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++. + |+|+|+++|++. ++.. +|++++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~-~~~~-~d~v~~l~ 197 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLR-TIID-YDKILVMD 197 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HHhh-CCEEEEEE
Confidence 567899999999999999999999999999999999999999999999984 4 899999999976 5544 99999999
Q ss_pred CCeEeEeCCh
Q psy16346 105 NGQTAYFGDT 114 (494)
Q Consensus 105 ~G~~~~~G~~ 114 (494)
+|+++..|++
T Consensus 198 ~g~i~~~g~~ 207 (207)
T cd03369 198 AGEVKEYDHP 207 (207)
T ss_pred CCEEEecCCC
Confidence 9999988864
No 299
>PRK13409 putative ATPase RIL; Provisional
Probab=99.75 E-value=3.8e-18 Score=185.90 Aligned_cols=105 Identities=31% Similarity=0.453 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.++++++.+||++..|+ .+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|+
T Consensus 433 ~~~~~L~~l~l~~~~~~-----~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 507 (590)
T PRK13409 433 YKSEIIKPLQLERLLDK-----NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507 (590)
T ss_pred HHHHHHHHCCCHHHHhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 45788999999877765 4567999999999999999999999999999999999999999999999986668999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCCh
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~ 114 (494)
|+++|++. .+..++||+++|+ |++...|+.
T Consensus 508 iivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 508 LVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred EEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 99999975 7888999999995 477776653
No 300
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=5.5e-18 Score=162.24 Aligned_cols=96 Identities=27% Similarity=0.336 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +..||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++ ++|.|+
T Consensus 117 ~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 190 (214)
T PRK13543 117 MPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL-RGGGAA 190 (214)
T ss_pred HHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 457788999998776654 56799999999999999999999999999999999999999999999987 568999
Q ss_pred EEEecCcchHHHhccCeEEEEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
|+++|++. ++.+.+|++++++.
T Consensus 191 ii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 191 LVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred EEEecChh-hhhhhcceEEEEee
Confidence 99999975 78999999999863
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5.7e-18 Score=183.46 Aligned_cols=108 Identities=23% Similarity=0.333 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..+. ..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++ .|.||
T Consensus 134 ~~~~~l~~~gl~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~ti 205 (530)
T PRK15064 134 RAGELLLGVGIPEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTM 205 (530)
T ss_pred HHHHHHHhCCCChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeE
Confidence 56788999999754321 24578999999999999999999999999999999999999999999863 47899
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeE-eEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQT-AYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~-~~~G~~~~~~~ 119 (494)
|+++|++. .+.+.||++++|++|++ ++.|++++..+
T Consensus 206 iivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 206 IIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 99999975 78899999999999999 58999887653
No 302
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=4.5e-18 Score=161.63 Aligned_cols=95 Identities=27% Similarity=0.338 Sum_probs=82.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+ .++.||||||||++||++++++|++++|||||+|||+.++..+.+.|++++ +.|.|
T Consensus 108 ~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~t 181 (204)
T PRK13538 108 EALWEALAQVGLAGFEDV-----PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA-EQGGM 181 (204)
T ss_pred HHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-HCCCE
Confidence 467889999999876665 456799999999999999999999999999999999999999999999987 46899
Q ss_pred EEEEecCcchHHHhccCeEEEE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLL 103 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll 103 (494)
+|+++|++. .+-..-+|++++
T Consensus 182 iii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 182 VILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred EEEEecChh-hhccCCceEEec
Confidence 999999975 565655677666
No 303
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=5.9e-18 Score=156.81 Aligned_cols=89 Identities=28% Similarity=0.405 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
||||||||+++|++++.+|++++|||||+|||+.++..+.+.+++++++.+.|+|+++|++. .+.+.+|++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999987443489999999975 67789999999998777
Q ss_pred eEe--CChhhHH
Q psy16346 109 AYF--GDTNKVV 118 (494)
Q Consensus 109 ~~~--G~~~~~~ 118 (494)
++. |+|...+
T Consensus 151 ~~~~~~~~~~~~ 162 (177)
T cd03222 151 VYGIASQPKGTR 162 (177)
T ss_pred cceeccCCcchh
Confidence 655 6665433
No 304
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=7.4e-18 Score=184.46 Aligned_cols=111 Identities=23% Similarity=0.406 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++++.++..|+.+ -.||.+|+ ....||||||||+++||+++++|+++++||||++||+.+...+.+.++++.
T Consensus 445 ~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~ 523 (576)
T TIGR02204 445 EVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM 523 (576)
T ss_pred HHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 4666677776643 24677776 356799999999999999999999999999999999999999999999985
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
.++|+|+++|+++ ....+|+++.+++|+++..|+.++..
T Consensus 524 --~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 524 --KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred --CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 3799999999984 46789999999999999999988764
No 305
>KOG0058|consensus
Probab=99.75 E-value=3.7e-18 Score=181.94 Aligned_cols=103 Identities=32% Similarity=0.592 Sum_probs=94.1
Q ss_pred CCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy16346 12 DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91 (494)
Q Consensus 12 ~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~ 91 (494)
++.+-.||.||+ +..+||||||||++|||||++||+||||||.||.||+++...+.+.|.+..+ ++|||++.|..+
T Consensus 589 ~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS- 664 (716)
T KOG0058|consen 589 NFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLS- 664 (716)
T ss_pred hCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhh-
Confidence 566678999997 4668999999999999999999999999999999999999999999999863 699999999975
Q ss_pred HHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 92 QIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 92 ~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
..+.+|+|+++++|++++.|+-+|+++
T Consensus 665 -TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 665 -TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred -HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 478999999999999999999888874
No 306
>KOG0057|consensus
Probab=99.74 E-value=6.4e-18 Score=174.60 Aligned_cols=112 Identities=30% Similarity=0.510 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCc-------ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLA-------NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.|.++.+..|+. +-.+|.||+ ....|||||||||+++|+++.+|+++++|||||.||+.+..++++.++..
T Consensus 456 eV~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~- 533 (591)
T KOG0057|consen 456 EVVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV- 533 (591)
T ss_pred HHHHHHHHcCcHHHHHhccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-
Confidence 455566666553 345667886 46679999999999999999999999999999999999999999999994
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
..|+|+|++.|+. +....||+|++|++|++...|+-++++.
T Consensus 534 -~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 534 -MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred -cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 4699999999995 5688999999999999999999999886
No 307
>KOG0055|consensus
Probab=99.74 E-value=4.3e-18 Score=190.97 Aligned_cols=103 Identities=35% Similarity=0.514 Sum_probs=95.5
Q ss_pred CCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy16346 12 DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91 (494)
Q Consensus 12 ~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~ 91 (494)
+|.+-.||.||+ +..+||||||||++||||+++||+||||||.||.||+++.+.+.+.|.+.. .|+|.|++.|.++
T Consensus 1111 sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS- 1186 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS- 1186 (1228)
T ss_pred cCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh-
Confidence 566778999997 577999999999999999999999999999999999999999999999974 5899999999986
Q ss_pred HHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 92 QIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 92 ~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
..+.+|.|.++++|++++.|+-++++.
T Consensus 1187 -TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1187 -TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred -hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 478999999999999999999999886
No 308
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=7.3e-18 Score=182.61 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+|+. +..++ .+.+||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++ +.|
T Consensus 417 ~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~t 487 (530)
T PRK15064 417 AVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGT 487 (530)
T ss_pred HHHHHHHHcCCChhHhcC-----cccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCE
Confidence 577889999994 55554 46789999999999999999999999999999999999999999999875 349
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~~ 119 (494)
||+++|++. .+.+.||++++|++|+++ +.|+++++.+
T Consensus 488 vi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 488 LIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999975 788899999999999998 8898876643
No 309
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.9e-17 Score=154.73 Aligned_cols=118 Identities=30% Similarity=0.500 Sum_probs=106.1
Q ss_pred hHHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++++.++.+++.+ ..+.-+ ..|+|||||||..|+..++.+|++.+||||-||||..+-+.+.+.++++. +.|.
T Consensus 121 ~~~~e~~~~l~~~~~~l~R~v----N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~ 195 (251)
T COG0396 121 KELKEKAELLGLDEEFLERYV----NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR-EEGR 195 (251)
T ss_pred HHHHHHHHHcCCCHHHhhccc----CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCC
Confidence 45778899999987 455544 45899999999999999999999999999999999999999999999997 6799
Q ss_pred EEEEEecCcchHHHhcc--CeEEEEeCCeEeEeCChhhHHHHHHhcCCC
Q psy16346 81 TVVVTVHQPSSQIFHMF--DKLLLLCNGQTAYFGDTNKVVDFFHNIGLT 127 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~--d~v~ll~~G~~~~~G~~~~~~~~f~~~g~~ 127 (494)
+++++||.. ++.+.- |++.+|.+|+|+..|.+ ++.+++++.|+.
T Consensus 196 ~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~ 241 (251)
T COG0396 196 GVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYD 241 (251)
T ss_pred eEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchH
Confidence 999999995 677776 99999999999999999 899999988885
No 310
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.74 E-value=9.2e-18 Score=161.69 Aligned_cols=95 Identities=22% Similarity=0.358 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++.++++.+||.+. .+. .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|
T Consensus 128 ~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~t 201 (224)
T TIGR02324 128 RARELLARLNIPERLWHL-----PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAK-ARGAA 201 (224)
T ss_pred HHHHHHHHcCCchhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCE
Confidence 56778999999753 343 467899999999999999999999999999999999999999999999996 56899
Q ss_pred EEEEecCcchHHHhccCeEEEEe
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
+|+++|++. .+.+.+|+++.+.
T Consensus 202 ii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 202 LIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred EEEEeCCHH-HHHHhcceeEecC
Confidence 999999954 6778999998763
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.74 E-value=1.8e-17 Score=164.96 Aligned_cols=91 Identities=24% Similarity=0.405 Sum_probs=80.7
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHH-HHHHHhcCcEEEEEecCcchHHHhccCeEEEE
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL-KRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLL 103 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l-~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll 103 (494)
....||||||||+.||++|+.+|++++|||||+|||+.++..+.+.+ +++. .+.|||+++|++. .+ ..+|++++|
T Consensus 156 ~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~-~~-~~~d~i~~l 231 (282)
T cd03291 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILIL 231 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChH-HH-HhCCEEEEE
Confidence 35689999999999999999999999999999999999999999865 5554 3789999999976 44 579999999
Q ss_pred eCCeEeEeCChhhHHH
Q psy16346 104 CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 104 ~~G~~~~~G~~~~~~~ 119 (494)
++|++++.|+++++.+
T Consensus 232 ~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 232 HEGSSYFYGTFSELQS 247 (282)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999887653
No 312
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.73 E-value=1e-17 Score=198.39 Aligned_cols=113 Identities=29% Similarity=0.447 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCc-------ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLA-------NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+++.++..++. +-.||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...+.+.|+++.
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~ 1405 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK 1405 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 455566655543 345899996 467799999999999999999999999999999999999999999999985
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeC----CeEe-EeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCN----GQTA-YFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~----G~~~-~~G~~~~~~ 118 (494)
+..++|+|+++|+++ ..+.+|+|++|++ |+++ ..|+.++++
T Consensus 1406 ~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1406 DKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred ccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 235899999999985 4678999999998 9955 899998876
No 313
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.73 E-value=1.5e-17 Score=183.88 Aligned_cols=109 Identities=26% Similarity=0.426 Sum_probs=97.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.++++.+||++..|+. ++.||||||||+.||++|+.+|+++++||||+|||+.++..+.+.+++++ +.|+|
T Consensus 123 ~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~-~~g~t 196 (648)
T PRK10535 123 LRAQELLQRLGLEDRVEYQ-----PSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR-DRGHT 196 (648)
T ss_pred HHHHHHHHHCCChhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCE
Confidence 3577889999998877754 56799999999999999999999999999999999999999999999987 46999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+++++|++. . .+.+||+++|++|++++.|++++..
T Consensus 197 ilivsH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 197 VIIVTHDPQ-V-AAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred EEEECCCHH-H-HHhCCEEEEEECCEEEeecCccccc
Confidence 999999975 4 4679999999999999999988764
No 314
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.73 E-value=1.1e-17 Score=157.07 Aligned_cols=82 Identities=35% Similarity=0.557 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++ .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ ++|+||
T Consensus 107 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-~~~~ti 180 (190)
T TIGR01166 107 RVREALTAVGASGLRER-----PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR-AEGMTV 180 (190)
T ss_pred HHHHHHHHcCchhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcCCEE
Confidence 56788999999877665 456799999999999999999999999999999999999999999999997 468999
Q ss_pred EEEecCcc
Q psy16346 83 VVTVHQPS 90 (494)
Q Consensus 83 i~~~H~p~ 90 (494)
|+++|++.
T Consensus 181 li~sH~~~ 188 (190)
T TIGR01166 181 VISTHDVD 188 (190)
T ss_pred EEEeeccc
Confidence 99999974
No 315
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.73 E-value=2.6e-17 Score=178.96 Aligned_cols=105 Identities=28% Similarity=0.348 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCcccccccccCc--cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 3 YVDHIINVLDLANCQHTIIGDY--MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~--~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
.+++.++.+++.+..+ .++. ....||||||||++|||+++++|++++|||||++||+.+...+.+.+.+..++.|+
T Consensus 424 ~~~~~~~~~~l~~~~~--~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 501 (547)
T PRK10522 424 LVEKWLERLKMAHKLE--LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK 501 (547)
T ss_pred HHHHHHHHcCCchhhh--ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5677888898876433 2222 13579999999999999999999999999999999999999999999876544589
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEe
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYF 111 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~ 111 (494)
|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 502 tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 502 TIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 9999999974 5778999999999999876
No 316
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.72 E-value=2e-17 Score=196.07 Aligned_cols=101 Identities=27% Similarity=0.487 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+.++++..++.+. .||.+|. ....||||||||++|||||+.+|++|+|||||++||+.+...+.+.|+++.
T Consensus 548 ~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~ 626 (1466)
T PTZ00265 548 EVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626 (1466)
T ss_pred HHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 45666667766543 4777876 477899999999999999999999999999999999999999999999987
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
++.|+|+|+++|+++ .+ +.+|++++|++|
T Consensus 627 ~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 627 GNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred hcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 446899999999985 44 789999999986
No 317
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.72 E-value=2.2e-17 Score=179.68 Aligned_cols=105 Identities=28% Similarity=0.383 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.. .+. .+.+|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++. .||
T Consensus 144 ~~~~~l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~tv 213 (556)
T PRK11819 144 QLEIAMDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----GTV 213 (556)
T ss_pred HHHHHHHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----CeE
Confidence 4677888899853 443 456899999999999999999999999999999999999999999998762 499
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~ 118 (494)
|+++|++. .+.+.+|++++|++|+++ +.|+.++..
T Consensus 214 iiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 214 VAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 99999975 788899999999999986 889877643
No 318
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.7e-17 Score=149.71 Aligned_cols=113 Identities=24% Similarity=0.385 Sum_probs=99.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++.+.+...||++..++ ++-+||||||||+.|||||+.+|++++||||++.||.-+++++.+.|-++++++|+.
T Consensus 111 ~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~ 185 (259)
T COG4525 111 EIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ 185 (259)
T ss_pred HHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 357788999999988764 567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHhccCeEEEEe--CCeEeEeCChhhHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLC--NGQTAYFGDTNKVVDF 120 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~--~G~~~~~G~~~~~~~~ 120 (494)
++++||+.. +..-+++|+++|+ .||++..=+++=..+|
T Consensus 186 ~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 186 VLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred EEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999976 5666899999998 5899887776644444
No 319
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.72 E-value=2.7e-17 Score=157.84 Aligned_cols=100 Identities=28% Similarity=0.397 Sum_probs=81.3
Q ss_pred HHHHHHHcCCccccc-------ccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHH--HHHHH
Q psy16346 4 VDHIINVLDLANCQH-------TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS--SLKRY 74 (494)
Q Consensus 4 v~~~l~~l~L~~~~~-------~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~--~l~~l 74 (494)
.+++++.++|.+..+ +..+ ..+..||||||||++||++++.+|++++|||||+|||+.++..+++ .++.+
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~ 188 (218)
T cd03290 110 YKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188 (218)
T ss_pred HHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH
Confidence 456677777654322 1122 2467899999999999999999999999999999999999999998 66666
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
. +.|.|+|+++|++. .+ ..+|++++|++|+
T Consensus 189 ~-~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 189 Q-DDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred h-cCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 4 56899999999985 45 5799999999884
No 320
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.5e-17 Score=181.65 Aligned_cols=107 Identities=29% Similarity=0.431 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+++.. ..++ .++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ .| |
T Consensus 409 ~~~~~L~~~~l~~~~~~~-----~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-t 479 (638)
T PRK10636 409 KLRDYLGGFGFQGDKVTE-----ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-A 479 (638)
T ss_pred HHHHHHHHcCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-e
Confidence 5678899999963 4554 45679999999999999999999999999999999999999999999886 25 9
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~~ 119 (494)
||+++|++. .+.++||++++|++|+++ +.|+.++..+
T Consensus 480 vi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 480 LVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999964 788899999999999997 8999887644
No 321
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.72 E-value=2.4e-17 Score=155.83 Aligned_cols=91 Identities=25% Similarity=0.344 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ +.|.|+
T Consensus 107 ~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 180 (198)
T TIGR01189 107 TIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGIV 180 (198)
T ss_pred HHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 578889999998777654 46799999999999999999999999999999999999999999999986 568999
Q ss_pred EEEecCcchHHHhccCeEEE
Q psy16346 83 VVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~l 102 (494)
|+++|++.. -.+++++.
T Consensus 181 i~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 181 LLTTHQDLG---LVEARELR 197 (198)
T ss_pred EEEEccccc---ccceEEee
Confidence 999999853 34576654
No 322
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=2.7e-17 Score=156.69 Aligned_cols=94 Identities=27% Similarity=0.338 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ ++|+|+
T Consensus 107 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~~ti 180 (207)
T PRK13539 107 DIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL-AQGGIV 180 (207)
T ss_pred HHHHHHHHcCCHHHHcC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HCCCEE
Confidence 47889999999876654 456799999999999999999999999999999999999999999999987 459999
Q ss_pred EEEecCcchHHHhccCeEEEEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
|+++|++. ++.. |+++.+..
T Consensus 181 ii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 181 IAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred EEEeCCch-hhcc--CcEEeecC
Confidence 99999975 5554 88887743
No 323
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=3.1e-17 Score=155.79 Aligned_cols=80 Identities=29% Similarity=0.492 Sum_probs=71.4
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHH-HHHHHHHhcCcEEEEEecCcchHHHhccCeEEEE
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS-SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLL 103 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll 103 (494)
...+||||||||++||++|+.+|+++++||||+|||+.++..+.+ .+++.. +.|+|||+++|++. .+.. +|++++|
T Consensus 124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~-~~~~tvi~~sh~~~-~~~~-~d~i~~l 200 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQ-LLPH-ADQIVVL 200 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-cCCCEEEEEeCCHH-HHhh-CCEEEEE
Confidence 467899999999999999999999999999999999999999998 566665 45899999999975 5555 9999999
Q ss_pred eCCe
Q psy16346 104 CNGQ 107 (494)
Q Consensus 104 ~~G~ 107 (494)
++|+
T Consensus 201 ~~G~ 204 (204)
T cd03250 201 DNGR 204 (204)
T ss_pred eCCC
Confidence 9985
No 324
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=2.5e-17 Score=152.14 Aligned_cols=75 Identities=41% Similarity=0.691 Sum_probs=70.0
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
||||||||++||++++.+|++++|||||+|||+.++..+.+.++++. + ++|+|+++|++. ++.. +|++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999985 4 699999999975 5665 99999999885
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.71 E-value=5.2e-17 Score=176.86 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=88.0
Q ss_pred hHHHHHHHHcCCcccccccc-cCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHH-HHHHhcC
Q psy16346 2 TYVDHIINVLDLANCQHTII-GDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK-RYAEKEG 79 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~v-g~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~-~l~~~~g 79 (494)
+++++.++.+++.+..+... |......||||||||++|||+++.+|++++|||||++||+.+...+.+.+. ++. ..|
T Consensus 443 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~ 521 (555)
T TIGR01194 443 DNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQG 521 (555)
T ss_pred HHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCC
Confidence 35677889999876544322 212236799999999999999999999999999999999999999998764 443 468
Q ss_pred cEEEEEecCcchHHHhccCeEEEEeCCeEeEe
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYF 111 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~ 111 (494)
+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 522 ~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 522 KTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999974 4679999999999999754
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.71 E-value=4.2e-17 Score=177.45 Aligned_cols=106 Identities=27% Similarity=0.394 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.. .++ .++.||||||||+.||++|+.+|++++|||||++||+.++..+.+.|+++ +.||
T Consensus 142 ~~~~~l~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tv 211 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTV 211 (552)
T ss_pred HHHHHHhhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeE
Confidence 3556777777743 343 45789999999999999999999999999999999999999999999875 2499
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~~ 119 (494)
|+++|++. .+...+|++++|++|+++ +.|+.++..+
T Consensus 212 IiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 212 VAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 99999975 788899999999999976 7898876554
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.5e-17 Score=179.63 Aligned_cols=106 Identities=26% Similarity=0.357 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+|+. +..+. .+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|
T Consensus 128 ~~~~~L~~lgl~~~~~~~-----~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~t 198 (638)
T PRK10636 128 RAASLLHGLGFSNEQLER-----PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGT 198 (638)
T ss_pred HHHHHHHhCCCCchhhcC-----chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCe
Confidence 578889999996 45564 45679999999999999999999999999999999999999999998764 469
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~ 118 (494)
||+++|++. .+.+.||++++|++|++. |.|+.++..
T Consensus 199 viivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 199 LILISHDRD-FLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 999999964 788899999999999996 678766543
No 328
>PLN03232 ABC transporter C family member; Provisional
Probab=99.71 E-value=5.9e-17 Score=193.32 Aligned_cols=112 Identities=17% Similarity=0.285 Sum_probs=96.6
Q ss_pred HHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+.+.++..++.+ -.||.||+ ....||||||||++|||||+++|++++||||||+||+.+...|.+.|++..
T Consensus 1340 ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~ 1418 (1495)
T PLN03232 1340 DLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF 1418 (1495)
T ss_pred HHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 4566677766643 34777876 456799999999999999999999999999999999999999999999864
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.++|+|+++|+++ ....+|||++|++|++++.|+++++++
T Consensus 1419 --~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1419 --KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred --CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4899999999985 355699999999999999999999874
No 329
>PLN03073 ABC transporter F family; Provisional
Probab=99.70 E-value=6.7e-17 Score=179.41 Aligned_cols=108 Identities=24% Similarity=0.385 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+|+.+ ..+. .+..||||||||++||++++.+|++++|||||+|||+.+...+.+.+++. .| |
T Consensus 606 ~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-t 676 (718)
T PLN03073 606 KLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-G 676 (718)
T ss_pred HHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-E
Confidence 5678899999963 4443 46789999999999999999999999999999999999999998888764 24 9
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVVDF 120 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~~~ 120 (494)
||+++|++. .+...||++++|++|+++ +.|+.++..++
T Consensus 677 vIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 677 VLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 999999975 788899999999999998 78988766544
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.70 E-value=6.8e-17 Score=178.44 Aligned_cols=104 Identities=28% Similarity=0.433 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.. + ..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .||
T Consensus 138 ~~~~~l~~lgl~~--~-----~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~----~tv 206 (635)
T PRK11147 138 RINEVLAQLGLDP--D-----AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ----GSI 206 (635)
T ss_pred HHHHHHHhCCCCC--C-----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC----CEE
Confidence 5778899999863 3 3567899999999999999999999999999999999999999999998862 499
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~ 118 (494)
|+++|++. .+.+.||+++.|++|+++ |.|+.++..
T Consensus 207 livsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 207 IFISHDRS-FIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EEEeCCHH-HHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 99999975 788899999999999997 568876544
No 331
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.70 E-value=5.1e-17 Score=166.50 Aligned_cols=108 Identities=37% Similarity=0.543 Sum_probs=98.9
Q ss_pred cCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 11 LDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 11 l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+.|..-.||.||+ ....||||||||+.+||||-.+|.+++||||-++||+.....+.+.|.+.. ++|.|+|+++|.|+
T Consensus 456 l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRPs 533 (580)
T COG4618 456 LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRPS 533 (580)
T ss_pred HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCHH
Confidence 3566678999997 467899999999999999999999999999999999999999999999985 77999999999985
Q ss_pred hHHHhccCeEEEEeCCeEeEeCChhhHHHHHH
Q psy16346 91 SQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 91 ~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~ 122 (494)
+...+|+|++|++|++..+|+.+|++....
T Consensus 534 --~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 534 --ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred --HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 688999999999999999999999997653
No 332
>PLN03130 ABC transporter C family member; Provisional
Probab=99.70 E-value=7.7e-17 Score=192.75 Aligned_cols=112 Identities=16% Similarity=0.273 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCc-------ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLA-------NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+.+.++..++. .-.||.||+ ....||||||||++|||||+++|+|++||||||+||+.+...|.+.|++..
T Consensus 1343 ei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1343 DLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred HHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 455566665553 345778876 456799999999999999999999999999999999999999999999874
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.++|+|+++|.++. ...||||++|++|++++.|+++++++
T Consensus 1422 --~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1422 --KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred --CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 48999999999863 55699999999999999999999874
No 333
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.70 E-value=5.8e-17 Score=145.45 Aligned_cols=77 Identities=40% Similarity=0.540 Sum_probs=70.8
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
..+||+||+||++||++++.+|+++++||||+|||+.++..+.+.++++ ++|+++++|++. ++.+.+|++++|++
T Consensus 68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~-~~~~~~d~v~~l~~ 142 (144)
T cd03221 68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRY-FLDQVATKIIELED 142 (144)
T ss_pred EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHH-HHHHhCCEEEEEeC
Confidence 3459999999999999999999999999999999999999999999875 369999999975 77889999999999
Q ss_pred Ce
Q psy16346 106 GQ 107 (494)
Q Consensus 106 G~ 107 (494)
|+
T Consensus 143 g~ 144 (144)
T cd03221 143 GK 144 (144)
T ss_pred CC
Confidence 85
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=99.70 E-value=5.9e-17 Score=176.57 Aligned_cols=97 Identities=29% Similarity=0.396 Sum_probs=88.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+. +.+||||||||++||++|+.+|++++|||||++||+.++..+.+.|++++ + |+|
T Consensus 191 ~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~t 263 (590)
T PRK13409 191 GKLDEVVERLGLENILDRD-----ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKY 263 (590)
T ss_pred HHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCE
Confidence 3578899999998877764 46799999999999999999999999999999999999999999999997 5 999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
||+++|++. ++..++|++++|.+|
T Consensus 264 vIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 264 VLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999975 788999999999864
No 335
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=7.5e-17 Score=144.23 Aligned_cols=111 Identities=31% Similarity=0.489 Sum_probs=97.5
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
..+++++.+++.. ++.+ .++..|||++||+.|||.|++.|+++|+||||.|||...+..+++.++.+.++.|..++
T Consensus 131 a~~WL~~VEI~~~---RiDD-~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~v 206 (258)
T COG4107 131 AQDWLEEVEIDLD---RIDD-LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHhcccCcc---cccC-cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEE
Confidence 4566777776542 2333 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+++|+.. ..--++||.++|++|++++.|-++++++
T Consensus 207 iVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 207 IVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred EEechhH-HHHHhhhcceeecCCCEecccccccccc
Confidence 9999974 5667799999999999999998887764
No 336
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.69 E-value=1.2e-16 Score=191.11 Aligned_cols=112 Identities=21% Similarity=0.308 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+.+.++..++.+ -.||.||+ ....||||||||++|||||+++|+|++||||||+||+++...+.+.|++..
T Consensus 1390 ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~ 1468 (1522)
T TIGR00957 1390 EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468 (1522)
T ss_pred HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 4556677766643 35778876 456799999999999999999999999999999999999999999999864
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.++|+|+++|+++ ....+|||++|++|++++.|+++++++
T Consensus 1469 --~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1469 --EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred --CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4899999999985 356799999999999999999999875
No 337
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.69 E-value=1e-16 Score=147.42 Aligned_cols=75 Identities=39% Similarity=0.557 Sum_probs=68.8
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
.++||||||||+++|++++.+|+++++||||+|||+.++..+.+.++++ ++|+|+++|++. ....+|++++|++
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~ 162 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDG 162 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcC
Confidence 5789999999999999999999999999999999999999999999875 589999999974 3579999999986
Q ss_pred C
Q psy16346 106 G 106 (494)
Q Consensus 106 G 106 (494)
|
T Consensus 163 ~ 163 (166)
T cd03223 163 E 163 (166)
T ss_pred C
Confidence 4
No 338
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.5e-16 Score=166.05 Aligned_cols=106 Identities=22% Similarity=0.368 Sum_probs=96.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++..++|+.+|+....++.| ++||+||||.|+||+|+..++++++|||||+.|+......+.+.++++. ++|.+
T Consensus 124 ~~A~~~l~~lg~~~~~~~~v-----~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ 197 (500)
T COG1129 124 RRARELLARLGLDIDPDTLV-----GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVA 197 (500)
T ss_pred HHHHHHHHHcCCCCChhhhh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCE
Confidence 46788999999964466655 4699999999999999999999999999999999999999999999997 78999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCCh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~ 114 (494)
||+++|.. +|++++|||+.+|.+|+.+..++.
T Consensus 198 ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 198 IIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred EEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999996 599999999999999999998883
No 339
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.68 E-value=1.3e-16 Score=180.06 Aligned_cols=105 Identities=25% Similarity=0.389 Sum_probs=92.9
Q ss_pred HHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCC--CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 7 IINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 7 ~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
.++.+||.+. .|+ ....|||||||||.||++|..+| ++++|||||+|||+..+..+.+.|++++ +.|.|||
T Consensus 472 ~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~-~~G~TVI 545 (943)
T PRK00349 472 FLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR-DLGNTLI 545 (943)
T ss_pred HhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHH-hCCCEEE
Confidence 5777888755 454 46789999999999999999997 9999999999999999999999999996 6799999
Q ss_pred EEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~~ 119 (494)
+++|++. ++ ..+|++++| ++|++++.|+++++.+
T Consensus 546 vVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 546 VVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999975 45 469999999 9999999999988753
No 340
>PLN03232 ABC transporter C family member; Provisional
Probab=99.68 E-value=1.1e-16 Score=191.06 Aligned_cols=113 Identities=27% Similarity=0.432 Sum_probs=94.9
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHH-HHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKR 73 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~-l~~ 73 (494)
++.+++++.-+|.+ --+|.||+. ...||||||||++||||+.++|++++||||||+||+.+...+.+. ++.
T Consensus 708 e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~ 786 (1495)
T PLN03232 708 ERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD 786 (1495)
T ss_pred HHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 35666777666543 246888874 567999999999999999999999999999999999999999765 554
Q ss_pred HHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 74 YAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 74 l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
. ..|+|+|++||+++ ....+|+|++|++|++++.|+.+++.+
T Consensus 787 ~--l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 787 E--LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred h--hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 4 35899999999985 467899999999999999999988763
No 341
>KOG0059|consensus
Probab=99.68 E-value=8.6e-17 Score=182.93 Aligned_cols=114 Identities=25% Similarity=0.505 Sum_probs=105.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.++++++.+||.+++|+.+ +.+|||+|||+++|.+++.+|++++|||||+|+||.++..+.+.++++. ++|+.
T Consensus 677 ~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~-k~g~a 750 (885)
T KOG0059|consen 677 SAIEKLLRLVGLGPYANKQV-----RTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR-KNGKA 750 (885)
T ss_pred HHHHHHHHHcCChhhhccch-----hhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH-hcCCE
Confidence 35789999999999999865 4589999999999999999999999999999999999999999999997 56779
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~ 122 (494)
+|+|+|.. +|...+|||+.+|.+|+....|+++++...|.
T Consensus 751 iiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 751 IILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred EEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 99999995 58999999999999999999999999997653
No 342
>PTZ00243 ABC transporter; Provisional
Probab=99.68 E-value=1.8e-16 Score=189.35 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=98.1
Q ss_pred hHHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhC-CCEeEEeCCCCCcCHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTN-PALMLLDEPTSGLDSHAAYSLMSSLKR 73 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~-p~~lllDEPtsgLD~~~~~~i~~~l~~ 73 (494)
+.+.+.++..||.+. .||.||+ ....||||||||++|||||+++ |++|+||||||+||+.+...+.+.|++
T Consensus 1413 eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1413 AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 356677777777543 5788876 4567999999999999999995 899999999999999999999999998
Q ss_pred HHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 74 YAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 74 l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.. .++|+|+++|+++ ....||+|++|++|++++.|+++++++
T Consensus 1492 ~~--~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1492 AF--SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HC--CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 64 4799999999984 467899999999999999999999864
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=99.68 E-value=1.9e-16 Score=175.86 Aligned_cols=106 Identities=30% Similarity=0.425 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.+|+. +..++ .+..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++ +.|
T Consensus 323 r~~~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~t 393 (718)
T PLN03073 323 RAASILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKT 393 (718)
T ss_pred HHHHHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCE
Confidence 566778888885 33443 45679999999999999999999999999999999999999999999875 579
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~ 118 (494)
+|+++|++ ..+.+.||++++|++|++. |.|+.++..
T Consensus 394 viivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 394 FIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred EEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999996 4778889999999999996 778766543
No 344
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=1.3e-16 Score=151.18 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++.+..++ ...+||||||||++||++++.+|+++++||||+|||+.++..+.+.|++++ +.|.|+
T Consensus 107 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~-~~~~ti 180 (200)
T PRK13540 107 GITELCRLFSLEHLIDY-----PCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR-AKGGAV 180 (200)
T ss_pred HHHHHHHHcCCchhhhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH-HcCCEE
Confidence 57888999999766554 346799999999999999999999999999999999999999999999986 568999
Q ss_pred EEEecCcchHHHhccCeEE
Q psy16346 83 VVTVHQPSSQIFHMFDKLL 101 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ 101 (494)
|+++|++. ..+.+|...
T Consensus 181 ii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 181 LLTSHQDL--PLNKADYEE 197 (200)
T ss_pred EEEeCCch--hccccchhh
Confidence 99999975 356677543
No 345
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.68 E-value=2.2e-16 Score=171.77 Aligned_cols=104 Identities=25% Similarity=0.373 Sum_probs=88.7
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 4 VDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 4 v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++++++.+||.+ ..++ .+..|||||||||.||++|+.+|++++|||||+|||+.++..+.+.|+++. | ||
T Consensus 423 ~~~~l~~~~l~~~~~~~-----~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~v 493 (552)
T TIGR03719 423 SRAYVGRFNFKGSDQQK-----KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CA 493 (552)
T ss_pred HHHHHHhCCCChhHhcC-----chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eE
Confidence 567889999964 3454 456799999999999999999999999999999999999999999999872 4 89
Q ss_pred EEEecCcchHHHhccCeEEEEeC-CeEe-EeCChhhH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN-GQTA-YFGDTNKV 117 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~-G~~~-~~G~~~~~ 117 (494)
|+++|++. .+.+.||++++|++ |++. +.|+.++.
T Consensus 494 iivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 494 VVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 99999975 78889999999986 6876 66776543
No 346
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=2.5e-16 Score=171.52 Aligned_cols=105 Identities=25% Similarity=0.344 Sum_probs=89.5
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 4 VDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 4 v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
++++++.+|+.+ ..++ .+.+||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++. | ||
T Consensus 425 ~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tv 495 (556)
T PRK11819 425 SRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CA 495 (556)
T ss_pred HHHHHHhCCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eE
Confidence 456888999963 3454 456899999999999999999999999999999999999999999999862 4 89
Q ss_pred EEEecCcchHHHhccCeEEEEeC-CeEe-EeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN-GQTA-YFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~-G~~~-~~G~~~~~~ 118 (494)
|+++|++. .+.+.||++++|++ |++. +.|+.++..
T Consensus 496 i~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~~ 532 (556)
T PRK11819 496 VVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEYE 532 (556)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHHH
Confidence 99999975 78899999999985 7876 577766543
No 347
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=2.3e-16 Score=177.81 Aligned_cols=103 Identities=27% Similarity=0.407 Sum_probs=90.4
Q ss_pred HHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCC--CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEE
Q psy16346 8 INVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84 (494)
Q Consensus 8 l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~ 84 (494)
++.+||... .+ .....|||||+||+.||++|+.+| ++++|||||+|||+.+...+.+.|+++. +.|.|||+
T Consensus 471 L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~-~~G~TVIv 544 (924)
T TIGR00630 471 LIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLR-DLGNTVIV 544 (924)
T ss_pred HhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHH-hCCCEEEE
Confidence 566677543 33 356789999999999999999986 8999999999999999999999999997 56999999
Q ss_pred EecCcchHHHhccCeEEEE------eCCeEeEeCChhhHH
Q psy16346 85 TVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVV 118 (494)
Q Consensus 85 ~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~ 118 (494)
++|++. .+ ..+|++++| ++|++++.|+++++.
T Consensus 545 VeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 545 VEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 999974 44 589999999 899999999998874
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.67 E-value=2.9e-16 Score=187.25 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=98.3
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+.+.++++..+|.+ -.||.||+ ....||||||||++|||||+++|+|++|||||++||..+...|.+.|++.
T Consensus 1321 eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred HHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 35667788877743 35777876 45679999999999999999999999999999999999999999999986
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
. .++|||+++|.++ ....+|+|++|++|+++..|+++++++
T Consensus 1400 ~--~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1400 F--SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred c--CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 4 4799999999985 456799999999999999999998874
No 349
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=1.5e-16 Score=144.87 Aligned_cols=110 Identities=25% Similarity=0.385 Sum_probs=100.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++|+..||.+.+|.. ...||-||||++.||.-++.+|++|++|||++|+-.....+..++++++++ +.+
T Consensus 126 ~ride~La~igL~~~~~~~-----A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hs 198 (249)
T COG4674 126 RRIDELLATIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHS 198 (249)
T ss_pred HHHHHHHHHcccchhhhhh-----hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--Cce
Confidence 5899999999999988854 446999999999999999999999999999999999999999999999983 689
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++.||+ ..+.+++|+|.+|++|.++..|+.+++..
T Consensus 199 ilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~v~~ 235 (249)
T COG4674 199 ILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDEVQN 235 (249)
T ss_pred EEEEeccH-HHHHHhhheeEEEeccceeecccHHHhhc
Confidence 99999996 58999999999999999999999887753
No 350
>PLN03130 ABC transporter C family member; Provisional
Probab=99.67 E-value=2.4e-16 Score=188.58 Aligned_cols=113 Identities=26% Similarity=0.431 Sum_probs=95.4
Q ss_pred hHHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHH-HHHH
Q psy16346 2 TYVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS-SLKR 73 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~-~l~~ 73 (494)
++.+++++.-+|.+. -+|.||+. ...||||||||++||||+.++|++++||||||+||+.+...+.+ .++.
T Consensus 708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~ 786 (1622)
T PLN03130 708 ERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD 786 (1622)
T ss_pred HHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhH
Confidence 456677777666443 47888874 56799999999999999999999999999999999999998874 5665
Q ss_pred HHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 74 YAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 74 l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.. .|+|+|++||++. ....+|+|++|++|+++..|+.+++.+
T Consensus 787 ~l--~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 787 EL--RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred Hh--cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 43 4899999999974 577899999999999999999988763
No 351
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=3e-16 Score=142.76 Aligned_cols=78 Identities=44% Similarity=0.724 Sum_probs=72.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
+|||||+||++||++++.+|+++++||||+|||..++..+.+.++++.+ .++|+++++|++. ++...+|+++++++|+
T Consensus 80 qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 3999999999999999999999999999999999999999999999874 4799999999975 6777899999999875
No 352
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=2.7e-16 Score=148.32 Aligned_cols=90 Identities=23% Similarity=0.205 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+++.+..++ ..+.||||||||++||++++.+|+++++||||+|||+.++..+.+.+++.. +.|+|+
T Consensus 103 ~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~ti 176 (195)
T PRK13541 103 TLYAAIHYFKLHDLLDE-----KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIV 176 (195)
T ss_pred HHHHHHHHcCCHhhhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 56778899999876664 356799999999999999999999999999999999999999999998765 568999
Q ss_pred EEEecCcchHHHhccCeE
Q psy16346 83 VVTVHQPSSQIFHMFDKL 100 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v 100 (494)
|+++|++. . ...+|-+
T Consensus 177 ii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 177 LLSSHLES-S-IKSAQIL 192 (195)
T ss_pred EEEeCCcc-c-cchhhee
Confidence 99999975 3 3345544
No 353
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.65 E-value=8.2e-16 Score=173.64 Aligned_cols=108 Identities=31% Similarity=0.385 Sum_probs=94.4
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCC---CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 4 VDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNP---ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 4 v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
..+.++.+||.+ ..+. ....||||||||+.||++|+.+| ++++|||||+|||+.+...+.+.++++. +.|
T Consensus 810 ~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~-~~G 883 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLV-DKG 883 (943)
T ss_pred HHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHH-hCC
Confidence 456788889875 2343 45789999999999999999999 9999999999999999999999999997 569
Q ss_pred cEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~~ 119 (494)
.|||+++|++. .+ +.+|+++.| ++|++++.|+++++.+
T Consensus 884 ~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 884 NTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999984 44 689999999 7999999999988763
No 354
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.65 E-value=3.6e-16 Score=169.48 Aligned_cols=97 Identities=30% Similarity=0.525 Sum_probs=83.0
Q ss_pred hHHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+.+++.++..|+.+. .||.+|+ ....||||||||++|||+++++|++++|||||++||+.+...+.+.++++
T Consensus 426 ~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~ 504 (529)
T TIGR02857 426 AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRAL 504 (529)
T ss_pred HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHh
Confidence 346677777777543 4778876 45679999999999999999999999999999999999999999999987
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEE
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLL 103 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll 103 (494)
. .++|+|+++|+++ ..+.+|++++|
T Consensus 505 ~--~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 505 A--QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c--CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 4899999999984 35789999875
No 355
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=6.8e-16 Score=161.21 Aligned_cols=105 Identities=25% Similarity=0.408 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.+++..+.|+++.. .+ ..+..||||.+|||.||+.|..+|++|+|||||.|.|..++.+|.+.++++| ++|++
T Consensus 380 ~~~~~~~~l~Ik~~s~~-----~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA-~~G~a 453 (500)
T COG1129 380 LAERYIRRLRIKTPSPE-----QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA-AEGKA 453 (500)
T ss_pred HHHHHHHhcCcccCCcc-----chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHH-HCCCE
Confidence 56778888888533 22 3467899999999999999999999999999999999999999999999999 56999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCCh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~ 114 (494)
||+++.+. +|+..+||||++|++|+++..=+.
T Consensus 454 il~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 454 ILMISSEL-PELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred EEEEeCCh-HHHHhhCCEEEEEECCEEEEEecc
Confidence 99999996 489999999999999999875443
No 356
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=2.1e-15 Score=170.06 Aligned_cols=106 Identities=31% Similarity=0.391 Sum_probs=92.3
Q ss_pred HHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhh---CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 4 VDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLT---NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 4 v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~---~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
..++++.+||... .+. ..+.||||||||+.||++|+. +|++++|||||+|||+..+..+.+.++++. +.|
T Consensus 808 ~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~-~~G 881 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLV-DQG 881 (924)
T ss_pred HHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCC
Confidence 4567888888652 332 467899999999999999997 599999999999999999999999999997 569
Q ss_pred cEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKV 117 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~ 117 (494)
.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999985 44 679999999 79999999998764
No 357
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.62 E-value=1.8e-15 Score=177.81 Aligned_cols=106 Identities=32% Similarity=0.462 Sum_probs=93.7
Q ss_pred HHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHh---hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 6 HIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELL---TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 6 ~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~---~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++.+||.+. .+. ....||||||||+.||++|+ .+|++++|||||+|||+.+...+++.|++++ +.|.|
T Consensus 791 ~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~-~~G~T 864 (1809)
T PRK00635 791 HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLT-HQGHT 864 (1809)
T ss_pred HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCE
Confidence 46788898765 454 45789999999999999998 6999999999999999999999999999997 56999
Q ss_pred EEEEecCcchHHHhccCeEEEEe------CCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLC------NGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~------~G~~~~~G~~~~~~~ 119 (494)
||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 865 VIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 865 VVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999975 55 8999999995 799999999988764
No 358
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.62 E-value=1.3e-15 Score=168.57 Aligned_cols=96 Identities=24% Similarity=0.319 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCccccccccc----CccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLANCQHTIIG----DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg----~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
+++++++.+||++..++..| ....+.||||||||++|||+++++|++++|||||+|||+.+...+.+.+++ .
T Consensus 553 ~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~ 628 (659)
T TIGR00954 553 DLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----F 628 (659)
T ss_pred HHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----c
Confidence 56788999999876544222 013468999999999999999999999999999999999999999988865 3
Q ss_pred CcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
|+|+|+++|+++ ..+.+|++++|+
T Consensus 629 ~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 629 GITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred CCEEEEEeCchH--HHHhCCEEEEEe
Confidence 899999999975 357899999997
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.62 E-value=1.7e-15 Score=181.10 Aligned_cols=100 Identities=24% Similarity=0.437 Sum_probs=87.0
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH-HhcCcEEEEEecCcchHHHh
Q psy16346 17 QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA-EKEGKTVVVTVHQPSSQIFH 95 (494)
Q Consensus 17 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~-~~~g~tii~~~H~p~~~i~~ 95 (494)
.+|.+|+ ....||||||||++||||+..+|++++|||||++||+.++..+.+.+.+.. ...|+|+|+++|++. . ..
T Consensus 750 ~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~-l~ 826 (1522)
T TIGR00957 750 DRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-Y-LP 826 (1522)
T ss_pred CCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-h-hh
Confidence 3567776 467899999999999999999999999999999999999999999997531 134799999999985 3 45
Q ss_pred ccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 96 MFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 96 ~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.+|++++|++|+++..|+.+++.+
T Consensus 827 ~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 827 QVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hCCEEEEecCCeEEeeCCHHHHHh
Confidence 699999999999999999988763
No 360
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.61 E-value=1.8e-15 Score=167.22 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=88.2
Q ss_pred HHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++.++++.+++. +..++ .++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.++++ +.|
T Consensus 419 ~~~~~l~~~~l~~~~~~~-----~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~t 489 (635)
T PRK11147 419 HVLGYLQDFLFHPKRAMT-----PVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGT 489 (635)
T ss_pred HHHHHHHhcCCCHHHHhC-----hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCe
Confidence 456778888885 34554 45679999999999999999999999999999999999999999999775 349
Q ss_pred EEEEecCcchHHHhccCeEEEEe-CCeEeE-eCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLC-NGQTAY-FGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~-~G~~~~-~G~~~~~ 117 (494)
||+++|++. .+..+||++++++ +|++.. .|+-++.
T Consensus 490 vi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 490 VLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999964 7888999999998 798864 5665554
No 361
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=2e-15 Score=134.50 Aligned_cols=101 Identities=28% Similarity=0.375 Sum_probs=89.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
....+++.++|.+..-+ ..+.+||||||||.+++|.|...|++|+||||||.||+.++..|-++|.++.++..+.+
T Consensus 112 aa~~llar~~l~~~~L~----k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv 187 (223)
T COG4619 112 AALDLLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV 187 (223)
T ss_pred HHHHHHHHcCCchhhhc----chhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEE
Confidence 45678889998765322 35678999999999999999999999999999999999999999999999987889999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
+.+||++. +..+.+|+++-+..|++
T Consensus 188 ~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 188 LWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred EEEecChH-HHhhhhheEEEeccCcc
Confidence 99999975 77899999999998876
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.61 E-value=2.1e-15 Score=179.87 Aligned_cols=97 Identities=27% Similarity=0.453 Sum_probs=85.5
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHH-HHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 18 HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 18 ~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~-l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
+|.+|+. ...||||||||++||||++.+|++++|||||++||+.++..+.+. ++++. .|+|+|+++|++. . ...
T Consensus 539 ~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~-~-~~~ 613 (1490)
T TIGR01271 539 KTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLE-H-LKK 613 (1490)
T ss_pred cccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChH-H-HHh
Confidence 4667763 678999999999999999999999999999999999999999974 66664 4899999999985 3 456
Q ss_pred cCeEEEEeCCeEeEeCChhhHHH
Q psy16346 97 FDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 97 ~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++++|++|+++..|+.+++.+
T Consensus 614 ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 614 ADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred CCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999988763
No 363
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-15 Score=152.97 Aligned_cols=101 Identities=33% Similarity=0.531 Sum_probs=89.9
Q ss_pred cccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHH
Q psy16346 14 ANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQI 93 (494)
Q Consensus 14 ~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i 93 (494)
-+-.||.||+. .=.|||||||||+|||+++.+|+++++||.||.||+.+...+...|++.+ .|+|.+++.|..+.
T Consensus 386 P~gy~t~Vger-glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlst-- 460 (497)
T COG5265 386 PEGYDTGVGER-GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLST-- 460 (497)
T ss_pred chhhhcccchh-eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhh--
Confidence 34568889874 23489999999999999999999999999999999999999999999986 48999999999864
Q ss_pred HhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 94 FHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 94 ~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.--+|.+++|++|+|++.|+-++++.
T Consensus 461 i~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 461 IIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred ccCCceEEEeeCCEEEecCcHHHHHH
Confidence 44699999999999999999888875
No 364
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.61 E-value=1.3e-15 Score=165.13 Aligned_cols=85 Identities=35% Similarity=0.503 Sum_probs=74.1
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
+++++.++..++.+ -.||.+|+ ....||||||||++||||++.+|++++||||||+||+.+...+.+.++++
T Consensus 438 e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 438 EELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 45677788777754 24888987 45679999999999999999999999999999999999999999999986
Q ss_pred HHhcCcEEEEEecCc
Q psy16346 75 AEKEGKTVVVTVHQP 89 (494)
Q Consensus 75 ~~~~g~tii~~~H~p 89 (494)
. .++|+|+++|++
T Consensus 517 ~--~~~TvIiItHrl 529 (529)
T TIGR02868 517 L--SGKTVVVITHHL 529 (529)
T ss_pred c--CCCEEEEEecCC
Confidence 4 489999999985
No 365
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.61 E-value=3.2e-15 Score=175.81 Aligned_cols=103 Identities=24% Similarity=0.432 Sum_probs=90.9
Q ss_pred HHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCC--CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEE
Q psy16346 8 INVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84 (494)
Q Consensus 8 l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~ 84 (494)
|+.+||.+. .|+ ....|||||+||+.||++|..+| ++++|||||+|||+.++..+.+.|++++ +.|.|||+
T Consensus 460 L~~vGL~~L~ldR-----~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~-~~G~TVIv 533 (1809)
T PRK00635 460 LIDLGLPYLTPER-----ALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLR-DQGNTVLL 533 (1809)
T ss_pred HHhccccCCCCCC-----chhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHH-hCCCEEEE
Confidence 556788765 454 45689999999999999999999 8999999999999999999999999997 56999999
Q ss_pred EecCcchHHHhccCeEEEEe------CCeEeEeCChhhHH
Q psy16346 85 TVHQPSSQIFHMFDKLLLLC------NGQTAYFGDTNKVV 118 (494)
Q Consensus 85 ~~H~p~~~i~~~~d~v~ll~------~G~~~~~G~~~~~~ 118 (494)
++|++. +.+.+|++++|. +|++++.|+++++.
T Consensus 534 VeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 534 VEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred EeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence 999974 679999999995 78999999988763
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.60 E-value=3.5e-15 Score=178.35 Aligned_cols=98 Identities=31% Similarity=0.429 Sum_probs=83.4
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhcc
Q psy16346 18 HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMF 97 (494)
Q Consensus 18 ~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~ 97 (494)
+|.+|+ ....||||||||++|||++..+|++++|||||++||+.++..+++.+.... ..|+|+|+++|++. . .+.+
T Consensus 773 ~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~-~-~~~a 848 (1560)
T PTZ00243 773 ETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA-LAGKTRVLATHQVH-V-VPRA 848 (1560)
T ss_pred hHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh-hCCCEEEEEeCCHH-H-HHhC
Confidence 345554 467899999999999999999999999999999999999999987543222 34899999999975 3 4789
Q ss_pred CeEEEEeCCeEeEeCChhhHHH
Q psy16346 98 DKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 98 d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|++++|++|++++.|+.+++.+
T Consensus 849 d~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 849 DYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred CEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999988753
No 367
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.59 E-value=5.1e-15 Score=141.62 Aligned_cols=82 Identities=22% Similarity=0.200 Sum_probs=73.5
Q ss_pred ccCCCCChHHHHHHHHHHHHhh----------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHH
Q psy16346 24 YMKRGLSGGEKKRANIACELLT----------NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQI 93 (494)
Q Consensus 24 ~~~~~lSgGerkRv~ia~~l~~----------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i 93 (494)
..+..||||||||+++|++++. +|+++++||||+|||+.+...+.+.+++++ +.|.|+|+++|++. .+
T Consensus 119 ~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~-~~~~tii~itH~~~-~~ 196 (213)
T cd03279 119 RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR-TENRMVGVISHVEE-LK 196 (213)
T ss_pred CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECchH-HH
Confidence 3567899999999999999985 578999999999999999999999999996 45899999999975 67
Q ss_pred HhccCeEEEEeCCe
Q psy16346 94 FHMFDKLLLLCNGQ 107 (494)
Q Consensus 94 ~~~~d~v~ll~~G~ 107 (494)
...+|++.++++|-
T Consensus 197 ~~~~~~i~~~~~~~ 210 (213)
T cd03279 197 ERIPQRLEVIKTPG 210 (213)
T ss_pred HhhCcEEEEEecCC
Confidence 88899999999874
No 368
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.59 E-value=4.8e-15 Score=152.19 Aligned_cols=105 Identities=28% Similarity=0.415 Sum_probs=96.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++.+..||.-..|.+|+ +||-||||||.|-++|..+|++|+|||||+=|-|....++.+.+++++ +.|+|
T Consensus 119 ~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~-~~G~t 192 (501)
T COG3845 119 ARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA-AEGKT 192 (501)
T ss_pred HHHHHHHHHhCCCCCccceee-----cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-HCCCE
Confidence 578899999999877776654 599999999999999999999999999999999999999999999998 67999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~ 113 (494)
||++||-.. |+.+.|||+.+|.+|+++-.-+
T Consensus 193 Ii~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 193 IIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 999999975 8999999999999999876544
No 369
>KOG0056|consensus
Probab=99.59 E-value=2e-15 Score=153.51 Aligned_cols=105 Identities=31% Similarity=0.524 Sum_probs=94.1
Q ss_pred HcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 10 ~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
.+++-+-.+|+||++ .-.|||||||||+|||+++.+|.+++|||.||.||..+...|...+.+++ . ++|.|++.|..
T Consensus 657 Il~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a-~RTtIVvAHRL 733 (790)
T KOG0056|consen 657 ILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-A-NRTTIVVAHRL 733 (790)
T ss_pred HhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-c-CCceEEEeeee
Confidence 367777789999984 33589999999999999999999999999999999999999999999998 3 78999999998
Q ss_pred chHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 90 SSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 90 ~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+. .-.+|.++++++|+|++.|.-+|++.
T Consensus 734 ST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 734 ST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred hh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 64 45799999999999999999888874
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.59 E-value=5.5e-15 Score=139.61 Aligned_cols=92 Identities=24% Similarity=0.283 Sum_probs=76.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHh
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~ 77 (494)
++++++++. .+..++ .++.||||||||++||++++ .+|+++++||||+|||+..+..+.+.+++++ +
T Consensus 95 ~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~-~ 165 (197)
T cd03278 95 GDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS-K 165 (197)
T ss_pred hhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-c
Confidence 356666666 333443 46789999999999999997 4669999999999999999999999999986 4
Q ss_pred cCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 78 ~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
+.|||+++|++. . .+.+|+++.+..
T Consensus 166 -~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 166 -ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred -CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 689999999975 3 578999999974
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.58 E-value=4.6e-15 Score=158.37 Aligned_cols=105 Identities=32% Similarity=0.447 Sum_probs=90.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.+++.++..||+.+. ++ ..++||||||+||.+|++|+.+|++|+|||||++||..+...+-+.|++. .| |
T Consensus 133 ~~~~~~L~gLg~~~~-~~-----~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-t 202 (530)
T COG0488 133 ARAEEALLGLGFPDE-DR-----PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-T 202 (530)
T ss_pred HHHHHHHhcCCCCcc-cC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-c
Confidence 467888999998776 54 45679999999999999999999999999999999999999999999864 36 9
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeE-eEeCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQT-AYFGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~-~~~G~~~~~ 117 (494)
+|+++|| +..+-+.|++|+-++.|++ .|.|.-+..
T Consensus 203 viiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 203 VIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred EEEEeCC-HHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 9999999 6688899999999999877 466765543
No 372
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.58 E-value=4.3e-15 Score=137.50 Aligned_cols=95 Identities=27% Similarity=0.399 Sum_probs=87.7
Q ss_pred cCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 11 LDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 11 l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+||++..++++|- |||||||-++++.|-++.|++++|||-|+.|||.++..+++.-.++.++.+.|.+++||+..
T Consensus 136 lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 136 LGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred cchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence 4677878877654 89999999999999999999999999999999999999999999999888999999999965
Q ss_pred hHHHhccCeEEEEeCCeEeEe
Q psy16346 91 SQIFHMFDKLLLLCNGQTAYF 111 (494)
Q Consensus 91 ~~i~~~~d~v~ll~~G~~~~~ 111 (494)
+..++-+|.++|++|+|+..
T Consensus 211 -~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 211 -DALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred -HHHhhCCeEEEEeCCeEEEE
Confidence 78999999999999999975
No 373
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=4e-15 Score=140.69 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHH----hhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHh-
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACEL----LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK- 77 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l----~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~- 77 (494)
+++++++. .+..++ .++.||+|||||++||+++ +.+|+++++||||+|||...+..+.+.|++++++
T Consensus 92 ~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~ 163 (198)
T cd03276 92 MARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQ 163 (198)
T ss_pred HHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcC
Confidence 45555655 444443 4678999999999999999 5899999999999999999999999999998644
Q ss_pred -cCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 78 -EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 78 -~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
.+.||++++|++. ++.+ +|+|.+|..|+
T Consensus 164 ~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 164 PGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred CCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 2468999999975 5555 59999998753
No 374
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.57 E-value=8.8e-15 Score=143.22 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCccccccc---------ccCc--------cCCCCChHHHHHHHHHHHHhhC----CCEeEEeCCCCCcCH
Q psy16346 3 YVDHIINVLDLANCQHTI---------IGDY--------MKRGLSGGEKKRANIACELLTN----PALMLLDEPTSGLDS 61 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~---------vg~~--------~~~~lSgGerkRv~ia~~l~~~----p~~lllDEPtsgLD~ 61 (494)
.++++++.+|+....... +.+. .+..||||||||++||++++.+ |+++++||||+|||+
T Consensus 113 ~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~ 192 (247)
T cd03275 113 EYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDN 192 (247)
T ss_pred HHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCH
Confidence 567888899986432211 1111 2378999999999999999875 899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 62 HAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 62 ~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
..+..+.+.+++++ +.|.++|+++|++ ++.+.+|+++++.
T Consensus 193 ~~~~~l~~~i~~~~-~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 193 TNVGKVASYIREQA-GPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred HHHHHHHHHHHHhc-cCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 99999999999997 4589999999995 5678999999997
No 375
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=2.1e-14 Score=129.69 Aligned_cols=112 Identities=22% Similarity=0.378 Sum_probs=101.4
Q ss_pred hHHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++.+.++..||-+ .++ .++..||.||||||++||||+.+|++++.||..++||...+-++.+..-++.++.|.
T Consensus 127 ~~i~~TL~~VGL~Pdhan-----~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~Gi 201 (267)
T COG4167 127 KQIFETLRMVGLLPDHAN-----YYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI 201 (267)
T ss_pred HHHHHHHHHhccCccccc-----cchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCc
Confidence 46788899999854 344 367889999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+-|.++++.. -+.++.|+|++|++|++++.|.+.++..
T Consensus 202 SyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 202 SYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred eEEEEechhh-HhhhhcccEEEEecCceeecCChhhhhc
Confidence 9999999965 7899999999999999999999988764
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=1.6e-14 Score=140.84 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=68.9
Q ss_pred ccCCCCChHHHHHHHHHHHHhh----CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCe
Q psy16346 24 YMKRGLSGGEKKRANIACELLT----NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDK 99 (494)
Q Consensus 24 ~~~~~lSgGerkRv~ia~~l~~----~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~ 99 (494)
..++.||||||||++||++++. +|+++++||||+|||+.++..+.+.+++++ + ++++|+++|++ ++.+.+|+
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~-~-~~~ii~~~h~~--~~~~~~d~ 229 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS-D-GAQFITTTFRP--ELLEVADK 229 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH--HHHhhCCE
Confidence 3567899999999999999974 589999999999999999999999999986 4 78888888885 57899999
Q ss_pred EEEEe
Q psy16346 100 LLLLC 104 (494)
Q Consensus 100 v~ll~ 104 (494)
+++|.
T Consensus 230 i~~l~ 234 (243)
T cd03272 230 FYGVK 234 (243)
T ss_pred EEEEE
Confidence 99996
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.55 E-value=2.8e-14 Score=139.95 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=80.9
Q ss_pred hHHHHHHHHcCCcccccc---------------cccCccCCCCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHH
Q psy16346 2 TYVDHIINVLDLANCQHT---------------IIGDYMKRGLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSH 62 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~---------------~vg~~~~~~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~ 62 (494)
+++++.++.+|+...... ..-+..+++||||||||++||++++ .+|+++++||||+|||+.
T Consensus 125 ~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~ 204 (251)
T cd03273 125 QRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLS 204 (251)
T ss_pred HHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHH
Confidence 357788888898621100 0112356789999999999999998 578999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 63 AAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 63 ~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.+..+.+.+++++ + |.++|+++|++ ++.+.+|+++-+.
T Consensus 205 ~~~~~~~~l~~~~-~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 205 HTQNIGRMIKTHF-K-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHc-C-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999999999985 4 88999999994 6788899998876
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.54 E-value=2.1e-14 Score=136.37 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=71.8
Q ss_pred ccCCCCChHHHHH------HHHHHHHhhCCCEeEEeCCCCCcCHHHHH-HHHHHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 24 YMKRGLSGGEKKR------ANIACELLTNPALMLLDEPTSGLDSHAAY-SLMSSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 24 ~~~~~lSgGerkR------v~ia~~l~~~p~~lllDEPtsgLD~~~~~-~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
..++.||+||||| +++|++++.+|+++++||||+|||+..+. .+.+.+++++++.|.++|+++|++. ....
T Consensus 111 ~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~ 188 (204)
T cd03240 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDA 188 (204)
T ss_pred cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhh
Confidence 3567899999996 78999999999999999999999999999 9999999997444889999999964 4578
Q ss_pred cCeEEEEe-CCe
Q psy16346 97 FDKLLLLC-NGQ 107 (494)
Q Consensus 97 ~d~v~ll~-~G~ 107 (494)
+|+++.|. +|+
T Consensus 189 ~d~i~~l~~~~~ 200 (204)
T cd03240 189 ADHIYRVEKDGR 200 (204)
T ss_pred CCEEEEEeeCCC
Confidence 99999996 453
No 379
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=5.3e-14 Score=133.35 Aligned_cols=115 Identities=23% Similarity=0.313 Sum_probs=106.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.-+|.+..|. +++..|.||+-|++++.+...+|++|++||-.+--|+.-+++..+.++++. ++++|
T Consensus 126 ~~~~eIieFaELG~fi~~-----PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~-~~~~t 199 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQ-----PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV-EKNKT 199 (249)
T ss_pred HHHHHHHHHHHHHHHhhC-----chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHH-HcCCE
Confidence 468889999999998886 567899999999999999999999999999999999999999999999997 45799
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHHHHh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~f~~ 123 (494)
+|+++|++. .+.+.|||+++|++|++.+.|.++++.++++.
T Consensus 200 iv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 200 IVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 999999975 89999999999999999999999999988764
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.52 E-value=1.9e-14 Score=137.50 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=76.8
Q ss_pred HHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhh----CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLT----NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 5 ~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~----~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++++.++|.+..++. ++.+|+|||||++||++++. +|+++++||||+|||+.+...+.+.+++++ + +.
T Consensus 109 ~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~-~~ 181 (212)
T cd03274 109 GEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-K-NA 181 (212)
T ss_pred CcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-C-CC
Confidence 3445666676655553 46799999999999999974 479999999999999999999999999985 3 56
Q ss_pred EEEEEecCcchHHHhccCeEEEEeC
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
|+|+++|++ ++.+.||++++|+.
T Consensus 182 ~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 182 QFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEEEECcH--HHHHhCCEEEEEEe
Confidence 888888995 67899999999974
No 381
>KOG0054|consensus
Probab=99.50 E-value=7.8e-14 Score=160.38 Aligned_cols=114 Identities=28% Similarity=0.445 Sum_probs=94.1
Q ss_pred hHHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
++-+++++.=.|++ .-.|.||+ +.-.||||||||+++|||+-++.++++||.|.|.+|++....+.+..-+.
T Consensus 611 ~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~ 689 (1381)
T KOG0054|consen 611 ERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG 689 (1381)
T ss_pred HHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh
Confidence 34555655444433 34566776 45679999999999999999999999999999999999999999555444
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
. -+++|+|++|||. +....+|.|++|++|++...|+.+|+.+
T Consensus 690 ~-L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 690 L-LRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred h-hcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 3 4689999999984 6788999999999999999999999883
No 382
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.48 E-value=2.5e-14 Score=131.75 Aligned_cols=115 Identities=21% Similarity=0.338 Sum_probs=105.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++.-+++...|+++.+|-. ..++.+|.-||-|+|.||.|++.+|++++.||||+.+||.++.++.++|.++.+.+|.|
T Consensus 134 rrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~Tt 211 (330)
T COG4170 134 RRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTT 211 (330)
T ss_pred HHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCce
Confidence 5677899999999888743 34688999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|++++||.. .+-+.||++-+|.-|+-+++++.+++++
T Consensus 212 ILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 212 ILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred EEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 999999975 6889999999999999999999998874
No 383
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.47 E-value=1.5e-11 Score=119.37 Aligned_cols=223 Identities=14% Similarity=0.198 Sum_probs=150.9
Q ss_pred HhHHhh-cchhHHHHHHHHHHHHHHHHHHHhccC-CC--ChhhH----HHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhh
Q psy16346 214 RNFQEA-RPRMLSTLNWVQTIGLGIMAGLLWFQL-PR--TEEAL----HDIQGWMFFSTTFWMLFAHFGALAS-FPPERE 284 (494)
Q Consensus 214 R~~~~~-R~~~~~~~r~~~~i~~~ll~G~~f~~~-~~--~~~~~----~~~~g~lf~~~~~~~~~~~~~~~~~-f~~er~ 284 (494)
|+++.. |++.....-+++.++..++.|.++-+. +. ...+. .-..|.+.+.+...+.. ..... .-.|+.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~---~~~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF---SGISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHhC
Confidence 566666 777666566788888888888877432 11 11121 12233333322222211 11111 112223
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy16346 285 VINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQ 364 (494)
Q Consensus 285 v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~ 364 (494)
++.| ....=.+...|+++|.+.+++..++..++...+.+++.+.+. ..+...++..++...+..++|.++
T Consensus 78 ~~~~-~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~l~~~~~~~lg~~l-------- 147 (236)
T TIGR01247 78 FLKE-ILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP-SGVIPTLVLAFIVGVALSGLGVAI-------- 147 (236)
T ss_pred HHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3333 223335678999999999999999999999999988777542 234444445555666778888888
Q ss_pred ccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCCCCc
Q psy16346 365 SVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFD 442 (494)
Q Consensus 365 ~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~~~ 442 (494)
++..+|.+.++.+.+++..++..+||.+.| .+|+|++|+.+++|.+|+.|++-....+ +..
T Consensus 148 ------~~~~~~~~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~-~~~---------- 210 (236)
T TIGR01247 148 ------AARMDSMEGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG-VSP---------- 210 (236)
T ss_pred ------HHHhCCHHHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC-CCc----------
Confidence 888999999999999999999999999999 9999999999999999999996553332 110
Q ss_pred cCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy16346 443 ACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGYI 485 (494)
Q Consensus 443 ~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~ 485 (494)
..+.+.++++++++.+++.+++..
T Consensus 211 -------------------~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 211 -------------------TFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred -------------------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 024667899999999988877654
No 384
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.45 E-value=1.8e-14 Score=129.13 Aligned_cols=109 Identities=28% Similarity=0.424 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhh-----CC--CEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLT-----NP--ALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~-----~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.++++.+.|+|++.... ...+|||||.|||-+|...+. || +++++|||.++||......+-..|.+++
T Consensus 105 ~i~~i~~~L~l~DKL~R-----s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c 179 (248)
T COG4138 105 LLNDVAGALALDDKLGR-----STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179 (248)
T ss_pred HHHHHHhhhcccchhhh-----hhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHH
Confidence 46778888888765442 467899999999999887753 44 5999999999999999999999999999
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
..|.+||++.||.+ ...+.+|++.+|+.|++...|.+++++
T Consensus 180 -~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 180 -QQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred -hCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 67999999999987 788999999999999999999999887
No 385
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.6e-13 Score=122.66 Aligned_cols=98 Identities=24% Similarity=0.385 Sum_probs=82.9
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.++..++..|++.+-.=. ..+...||||+|||.|||.++.+-++|+|||||+.||...+.-++++|++- |..|..
T Consensus 130 ~~a~~Ll~rLnlperLW~----LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaA 204 (235)
T COG4778 130 AKAADLLTRLNLPERLWS----LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAA 204 (235)
T ss_pred HHHHHHHHHcCCCHHHhc----CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCce
Confidence 457788899998543221 357789999999999999999999999999999999999999999999985 588999
Q ss_pred EEEEecCcchHHHhccCeEEEEeC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
++-+-|| .+.-...+||++-+..
T Consensus 205 lvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 205 LVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred EEEeecc-HHHHHHHhhheeeccc
Confidence 9999999 4455677999988753
No 386
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.43 E-value=5.3e-13 Score=124.05 Aligned_cols=75 Identities=27% Similarity=0.320 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEE
Q psy16346 28 GLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLL 103 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll 103 (494)
-||||||||+++|++++ .+|+++++|||++|||+..+..+.+.+++++ +.|.++|+++|++. ..+.+|+++.+
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~-~~g~tiIiiSH~~~--~~~~adrvi~i 170 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA-KHTSQFIVITLKKE--MFENADKLIGV 170 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHH--HHhhCCeEEEE
Confidence 39999999999999996 6899999999999999999999999999987 45899999999974 46789999999
Q ss_pred eC
Q psy16346 104 CN 105 (494)
Q Consensus 104 ~~ 105 (494)
.+
T Consensus 171 ~~ 172 (178)
T cd03239 171 LF 172 (178)
T ss_pred EE
Confidence 75
No 387
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.43 E-value=5.8e-13 Score=142.37 Aligned_cols=108 Identities=27% Similarity=0.345 Sum_probs=89.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.+...|..+++..-.-. .+++.||||||.|+.+|+.++.+|.+|+|||||+.||..+...+-+.|++.. | |
T Consensus 417 ~~~r~~L~~f~F~~~~~~----~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---G-t 488 (530)
T COG0488 417 QEVRAYLGRFGFTGEDQE----KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---G-T 488 (530)
T ss_pred HHHHHHHHHcCCChHHHh----CchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---C-e
Confidence 356677888888643221 3467899999999999999999999999999999999999999999998763 4 9
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeE-eCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAY-FGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~-~G~~~~~~~ 119 (494)
||+++||+ ..+-+.+++++.+.+ ++.. .|..++..+
T Consensus 489 vl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 489 VLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred EEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999995 588899999999988 5544 477665544
No 388
>KOG0927|consensus
Probab=99.42 E-value=4.3e-13 Score=138.78 Aligned_cols=108 Identities=30% Similarity=0.416 Sum_probs=88.1
Q ss_pred HHHHHHHHcCC-cccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLDL-ANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~L-~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++.+++..+|. ++.+++ ..+++|||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.- .+ +
T Consensus 200 k~~~il~glgf~~~m~~k-----~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d--~~-~ 271 (614)
T KOG0927|consen 200 KAAKILHGLGFLSEMQDK-----KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD--RI-I 271 (614)
T ss_pred HHHHHHHhcCCCHhHHHH-----HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc--Cc-e
Confidence 34556666664 455554 467899999999999999999999999999999999999999999998762 23 7
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCe-EeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQ-TAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~-~~~~G~~~~~~~ 119 (494)
+++++|. .+.+=..|.+|+-|.+++ +.|.|+-++...
T Consensus 272 lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 272 LVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred EEEEecc-hhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 8888887 557778999999999998 667788766543
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.42 E-value=4.1e-13 Score=138.11 Aligned_cols=110 Identities=23% Similarity=0.384 Sum_probs=97.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+...+++++++.....-. .+.+.||||++||+-+||+|..+|++|+..+||.|||..+...+.+.|.+.+ +.|+.
T Consensus 381 ~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~A 455 (501)
T COG3845 381 KFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKA 455 (501)
T ss_pred HHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCE
Confidence 456788999998643221 2467899999999999999999999999999999999999999999999987 67999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
|++++-+. +|++.++||+.+|++|+++...++++.
T Consensus 456 VLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 456 VLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred EEEEehhH-HHHHHhhheeeeeeCCceecccccccC
Confidence 99999996 599999999999999999999888763
No 390
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.41 E-value=4.2e-13 Score=128.28 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=69.5
Q ss_pred ccCCCCChHHHHHHHHHHHH----hhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC-cEEEEEecCcchHHHhccC
Q psy16346 24 YMKRGLSGGEKKRANIACEL----LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG-KTVVVTVHQPSSQIFHMFD 98 (494)
Q Consensus 24 ~~~~~lSgGerkRv~ia~~l----~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~~H~p~~~i~~~~d 98 (494)
..+.+||||||||+.++.++ +.+|+++++||||+|||+..+..+.+.+++.+++.| .++|+++|+.. ++.+.+|
T Consensus 122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~ 200 (213)
T cd03277 122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHE 200 (213)
T ss_pred cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccC
Confidence 35678999999998877554 579999999999999999999999999999874424 57999999965 4566776
Q ss_pred --eEEEEeCCe
Q psy16346 99 --KLLLLCNGQ 107 (494)
Q Consensus 99 --~v~ll~~G~ 107 (494)
++++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 788888886
No 391
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=119.22 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=76.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.+.+.++.+||....|.. .+.||-||||||+|||-+++.+++-+||||+++||......+-..+..-+ ..|-.
T Consensus 109 ~~i~~Al~~vgL~g~~dlp-----~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~-~~GGi 182 (209)
T COG4133 109 ATIWEALAQVGLAGLEDLP-----VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQGGI 182 (209)
T ss_pred hhHHHHHHHcCcccccccc-----hhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh-cCCCE
Confidence 3567889999999988864 56799999999999999999999999999999999999999999999887 56889
Q ss_pred EEEEecCcch
Q psy16346 82 VVVTVHQPSS 91 (494)
Q Consensus 82 ii~~~H~p~~ 91 (494)
||.+||||..
T Consensus 183 VllttHq~l~ 192 (209)
T COG4133 183 VLLTTHQPLP 192 (209)
T ss_pred EEEecCCccC
Confidence 9999999874
No 392
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.6e-12 Score=138.53 Aligned_cols=107 Identities=30% Similarity=0.452 Sum_probs=93.0
Q ss_pred HHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCC---CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 6 HIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNP---ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 6 ~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+.|..+||.-.. +| .+...|||||.||+-+|.+|.... -+++|||||+||......++++.|.++. ..|.||
T Consensus 804 qtL~dVGLgYi~---LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLv-d~GnTV 878 (935)
T COG0178 804 QTLVDVGLGYIK---LG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLV-DKGNTV 878 (935)
T ss_pred HHHHHcCcceEe---cC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Confidence 456667776432 34 256789999999999999998766 8999999999999999999999999998 679999
Q ss_pred EEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~~ 119 (494)
|++.|+. ++...+|.|+=| .+|++++.|+|+++.+
T Consensus 879 iVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 879 IVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999996 688999999998 4689999999999875
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=2.2e-12 Score=131.05 Aligned_cols=96 Identities=29% Similarity=0.411 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+.+++++.|+|++..|.- +.+|||||-||++||.+++.+.+++++|||+|-||..++....+.+++++ +.+++|
T Consensus 193 ~~devve~l~L~nvl~r~-----v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~-~~~k~V 266 (591)
T COG1245 193 KFDEVVERLGLENVLDRD-----VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA-EDGKYV 266 (591)
T ss_pred cHHHHHHHhcchhhhhhh-----hhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHh-ccCCeE
Confidence 478899999999988864 56799999999999999999999999999999999999999999999999 458999
Q ss_pred EEEecCcchHHHhccCeEEEEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
+++.||.. -+=-+.|-|.++.+
T Consensus 267 iVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 267 IVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred EEEechHH-HHHHhhheeEEEec
Confidence 99999974 34446888888864
No 394
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=3.3e-12 Score=129.79 Aligned_cols=118 Identities=29% Similarity=0.417 Sum_probs=93.7
Q ss_pred HHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEE
Q psy16346 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84 (494)
Q Consensus 5 ~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~ 84 (494)
.++++-|+|++..+. .+.+|||||.|||+||.+|..++++++||||++-||++.+..+.+.|++....+++|.++
T Consensus 437 ~ei~~pl~l~~i~e~-----~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~v 511 (591)
T COG1245 437 TEIVKPLNLEDLLER-----PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV 511 (591)
T ss_pred HhhcCccchHHHHhc-----ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEE
Confidence 456777888877775 456799999999999999999999999999999999999999999999999889999999
Q ss_pred EecCcchHHHhccCeEEEEeC--CeE-eEeCCh---hhHHHHHHhcCCCc
Q psy16346 85 TVHQPSSQIFHMFDKLLLLCN--GQT-AYFGDT---NKVVDFFHNIGLTW 128 (494)
Q Consensus 85 ~~H~p~~~i~~~~d~v~ll~~--G~~-~~~G~~---~~~~~~f~~~g~~~ 128 (494)
+.||.. -+--+.||+++..+ |+- ...+|. +.+-.|++.+|..+
T Consensus 512 VdHDi~-~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l~vTF 560 (591)
T COG1245 512 VDHDIY-MIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTF 560 (591)
T ss_pred Eeccee-hhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHHcCcEE
Confidence 999975 44456899988853 222 223332 22345667777754
No 395
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.34 E-value=4.5e-11 Score=113.75 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=119.0
Q ss_pred CChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceee
Q psy16346 295 YRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACC 374 (494)
Q Consensus 295 Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~ 374 (494)
-+.+.++++|.+..++..++.+++...+.|++.|++.. .+..+++..++...+..++|+++ ++..
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~-~~~~~~l~~~l~~~~~~~lg~~l--------------~~~~ 121 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA-HPPATFGFAILTSLTFMAIIQFL--------------VALF 121 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CHHHHHHHHHHHHHHHHHHHHHH--------------HHHh
Confidence 44567899999999999999999999999999998643 45566666777778888888888 7777
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCCCCccCCCCcccCH
Q psy16346 375 MDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACANSTYIPV 452 (494)
Q Consensus 375 ~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~~~~C~~~~~~~g 452 (494)
++...+ ++.++..+.+.++|.+.| .||+|++|+.+++|.+|+.+++-...+++ .
T Consensus 122 ~~~~~~--~~~~~~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~-~--------------------- 177 (208)
T TIGR03062 122 GNVGRF--LALVLLVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG-N--------------------- 177 (208)
T ss_pred CcchHH--HHHHHHHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC-c---------------------
Confidence 765443 344445566677888888 99999999999999999999997666642 1
Q ss_pred hHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16346 453 DAILESQGSSLPLWCNTLILIGFLVFFRTLGYIVLRYFRR 492 (494)
Q Consensus 453 ~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 492 (494)
..+.|.++++++++.+++.++++...|+++|
T Consensus 178 ---------~~~~~~~~~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 178 ---------DGTLWQAVAVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 0246889999999999999999988876654
No 396
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.33 E-value=4.3e-12 Score=116.18 Aligned_cols=76 Identities=33% Similarity=0.455 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHHHHhh----CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE
Q psy16346 27 RGLSGGEKKRANIACELLT----NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~----~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l 102 (494)
.++|+||+||++++++|.. +|+++++|||++|+|+.....+.+.+++..++ |.++|++||++ ++.+.+|+++.
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~ 152 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIH 152 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEE
Confidence 4699999999999999986 78999999999999999999999999998755 89999999997 45678999999
Q ss_pred EeC
Q psy16346 103 LCN 105 (494)
Q Consensus 103 l~~ 105 (494)
|..
T Consensus 153 l~~ 155 (162)
T cd03227 153 IKK 155 (162)
T ss_pred EEE
Confidence 864
No 397
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=3.4e-12 Score=127.00 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHHHhh----CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE
Q psy16346 27 RGLSGGEKKRANIACELLT----NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~----~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l 102 (494)
..||||||||+++|++++. +|+++++||||+|||+.....+.+.+++++ + +.|+|+++|+|. +.+.+|+++.
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~-~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-R-SHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEechHH--HHHhcCcEEE
Confidence 3599999999999987654 999999999999999999999999999986 3 789999999975 5689999999
Q ss_pred EeCCe
Q psy16346 103 LCNGQ 107 (494)
Q Consensus 103 l~~G~ 107 (494)
+.+|.
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 98653
No 398
>KOG0054|consensus
Probab=99.32 E-value=8.4e-12 Score=143.88 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=87.0
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 17 QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 17 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
.|+.|.+ ....+|-||||-+++||||+++++|++|||.|+.+|+++-..|.+.||+- -.++||+.+.|.... .--
T Consensus 1265 Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~--F~dcTVltIAHRl~T--Vmd 1339 (1381)
T KOG0054|consen 1265 LDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE--FKDCTVLTIAHRLNT--VMD 1339 (1381)
T ss_pred CCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH--hcCCeEEEEeeccch--hhh
Confidence 4555543 34679999999999999999999999999999999999999999999985 458999999999864 456
Q ss_pred cCeEEEEeCCeEeEeCChhhHHH
Q psy16346 97 FDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 97 ~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|||+||++|+++++|+|.++++
T Consensus 1340 ~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1340 SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred cCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999884
No 399
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.32 E-value=3e-12 Score=112.32 Aligned_cols=84 Identities=25% Similarity=0.305 Sum_probs=76.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.++..+++.||....+. .+..||||||-||++-|+|+..|+.++||||+|.||..-+.+..+..-.-.++.|..
T Consensus 113 ~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiP 187 (213)
T COG4136 113 NAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIP 187 (213)
T ss_pred hhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 347788999999988774 578899999999999999999999999999999999999999999988777788999
Q ss_pred EEEEecCcc
Q psy16346 82 VVVTVHQPS 90 (494)
Q Consensus 82 ii~~~H~p~ 90 (494)
++.+||+-.
T Consensus 188 tv~VTHD~~ 196 (213)
T COG4136 188 TVQVTHDLQ 196 (213)
T ss_pred eEEEecccc
Confidence 999999954
No 400
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.29 E-value=8e-12 Score=136.20 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=69.9
Q ss_pred CCCChHHHHHHHHHHHHhhC----CCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE
Q psy16346 27 RGLSGGEKKRANIACELLTN----PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~----p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l 102 (494)
+.+||||+||+++|++++.. |+++++|||++|||+.++..+.+.|++++ + |++||++||+|. +...+|++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChHH--HHHhcCeEEE
Confidence 57899999999999999985 69999999999999999999999999997 4 799999999974 4578999999
Q ss_pred EeCCe
Q psy16346 103 LCNGQ 107 (494)
Q Consensus 103 l~~G~ 107 (494)
+++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
No 401
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.28 E-value=1.1e-09 Score=105.95 Aligned_cols=222 Identities=14% Similarity=0.142 Sum_probs=134.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHhhcCCCCC
Q psy16346 220 RPRMLSTLNWVQTIGLGIMAGLLWFQLPRTEEALHD-IQGWMFFSTTFWMLFAHFGALASFPPER--EVINKERLSGAYR 296 (494)
Q Consensus 220 R~~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~~~~~f~~er--~v~~rE~~~~~Y~ 296 (494)
|+|.....-+.+.+++-++.+.+|-+. .+.+..+. ..|.+-+..+.. +....-.....|| ..+.|=+..- .+
T Consensus 3 r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 3 RVGAQIILTMFIPITFMVGLNLLPGGS-VTHNRGATFIPVLMALAAIST---AFTGQAIAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCcchhHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhCHHHHHhcCC-Cc
Confidence 677666566677777766777666542 11111211 222222211111 1111222233333 3444444443 57
Q ss_pred hHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccceeecc
Q psy16346 297 LSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMD 376 (494)
Q Consensus 297 ~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~ 376 (494)
+..|+++|.+...+..++...++. +++++.|++........+....+....+.+++.+++.+ +...++
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~ 145 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLV-----------AGGTLQ 145 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHH-----------Hhcccc
Confidence 889999999988888776655554 55667787632222233333333444455566665111 222355
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCCCCccCCCCcccCHhH
Q psy16346 377 MQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACANSTYIPVDA 454 (494)
Q Consensus 377 ~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~~~~C~~~~~~~g~~ 454 (494)
.+.+..+..++.+++.++||.+.| .||.|++|+.+++|++|+.+++-..-.+ +..
T Consensus 146 ~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~-~~~---------------------- 202 (232)
T TIGR00025 146 AEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV-SVD---------------------- 202 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC-CCC----------------------
Confidence 666688888888999999999999 9999999999999999999987543322 110
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy16346 455 ILESQGSSLPLWCNTLILIGFLVFFRTLGYIVLR 488 (494)
Q Consensus 455 ~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~ 488 (494)
....|.++++++++.+++..++....|
T Consensus 203 -------~~~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 203 -------TFGAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 023678888999998888877776543
No 402
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.28 E-value=2.7e-09 Score=104.89 Aligned_cols=232 Identities=11% Similarity=0.033 Sum_probs=149.5
Q ss_pred HHHHHHHhHHhh-cc-hhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy16346 208 FKVLSQRNFQEA-RP-RMLSTLNWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREV 285 (494)
Q Consensus 208 ~~~L~~R~~~~~-R~-~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v 285 (494)
...+.+|+++.. |+ +......+++.++.-+++|..+-....+..+. + -.-|.......+..+..+... .--..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~--y~~f~~pg~l~~~~~~~~~~~--~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-S--YAAFLAAGMVATSAMTASTFE--TIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-C--HHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 345669999988 77 66666667888888788888764321111111 1 111221111111111111100 00123
Q ss_pred HHHhhcCCC--------CChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16346 286 INKERLSGA--------YRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVG 357 (494)
Q Consensus 286 ~~rE~~~~~--------Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i~ 357 (494)
+.|||.+|. -++..+.+||.+.+.-..++..++...+.++ .|..........+...++..+...++|+++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~~~~l~~~~~~ll~~l~~~~lg~~~- 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEWWSLIYILPVIALTGLAFASLSMLV- 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhchhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444444443 3678999999999877777776665555443 343322334434444455666677889888
Q ss_pred cccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCcccc
Q psy16346 358 ACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQC 435 (494)
Q Consensus 358 ~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C 435 (494)
++..++.+.+..+..++..+++.+||.+.| .||.|++++.+++|+.|+.|++-..-++ +.
T Consensus 160 -------------a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g-~~---- 221 (253)
T TIGR01291 160 -------------AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG-GP---- 221 (253)
T ss_pred -------------HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC-CC----
Confidence 888999999999999999999999999999 9999999999999999999997554332 10
Q ss_pred CCCCCCccCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16346 436 ATQSKFDACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGYIVLRYF 490 (494)
Q Consensus 436 ~~~~~~~~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~ 490 (494)
..+.|.++++++++.+++..++....|++
T Consensus 222 --------------------------~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 222 --------------------------GTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01245678889999888888887766554
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.27 E-value=3.3e-12 Score=121.01 Aligned_cols=83 Identities=24% Similarity=0.185 Sum_probs=73.2
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM-SSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
...+|+|+||++.++++ +.+|+++++|||++|+|+.....+. ..++++. +.|.++|+++|++ ++.+.+|++..+.
T Consensus 89 ~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~-~~~~~vi~~tH~~--~l~~~~d~~~~l~ 164 (200)
T cd03280 89 LSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELL-ERGALVIATTHYG--ELKAYAYKREGVE 164 (200)
T ss_pred cchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECCHH--HHHHHHhcCCCeE
Confidence 45689999999999987 5899999999999999999999997 4677776 5689999999984 6789999999999
Q ss_pred CCeEeEeC
Q psy16346 105 NGQTAYFG 112 (494)
Q Consensus 105 ~G~~~~~G 112 (494)
+|++.+.+
T Consensus 165 ~g~l~~~~ 172 (200)
T cd03280 165 NASMEFDP 172 (200)
T ss_pred EEEEEEec
Confidence 99998874
No 404
>PRK10869 recombination and repair protein; Provisional
Probab=99.25 E-value=2.2e-11 Score=131.94 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=69.5
Q ss_pred CCCChHHHHHHHHHHHHhh----CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE
Q psy16346 27 RGLSGGEKKRANIACELLT----NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~----~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l 102 (494)
+.+||||++|++||++++. +|+++++|||++|||..++..+.+.+++++ + +.+||++||+|. +...+|+.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~-~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-E-STQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH--HHHhCCEEEE
Confidence 4589999999999999997 589999999999999999999999999996 3 689999999984 5689999999
Q ss_pred EeCCe
Q psy16346 103 LCNGQ 107 (494)
Q Consensus 103 l~~G~ 107 (494)
+.++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
No 405
>KOG0062|consensus
Probab=99.24 E-value=2.1e-11 Score=125.79 Aligned_cols=103 Identities=28% Similarity=0.414 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.+++-+..+||+.- +....+.+||||||-||.+|.....+|.+|+|||||+.||-.+-..+.+.|+... | .|
T Consensus 461 e~r~hl~~~Gl~g~----la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---G-GV 532 (582)
T KOG0062|consen 461 EIRRHLGSFGLSGE----LALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---G-GV 532 (582)
T ss_pred HHHHHHHhcCCCch----hhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---C-cE
Confidence 45667888998643 1223468899999999999999999999999999999999999999999998752 4 78
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeE-eCCh
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAY-FGDT 114 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~-~G~~ 114 (494)
|+++|+ .+.+-..|+.+.+.++|++.- .|..
T Consensus 533 v~VSHd-~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 533 VLVSHD-EEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred EEEECc-HHHHhhcCceeEEEcCCcEEeeeccH
Confidence 999999 558889999999999999975 3443
No 406
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=2.6e-11 Score=141.27 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=73.8
Q ss_pred ccCCCCChHHHHHHHHHHHHhh----------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHH
Q psy16346 24 YMKRGLSGGEKKRANIACELLT----------NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQI 93 (494)
Q Consensus 24 ~~~~~lSgGerkRv~ia~~l~~----------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i 93 (494)
..++.|||||++|+++|++|+. +|+++|+||||+|||+.+...+++.|+++. ..|++|++++|+|. ..
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~-~~g~~i~iisH~~~-~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIR-EGSKMIGIISHVPE-FR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcHH-HH
Confidence 3578999999999999999985 799999999999999999999999999997 57999999999975 68
Q ss_pred HhccCeEEEEeCC
Q psy16346 94 FHMFDKLLLLCNG 106 (494)
Q Consensus 94 ~~~~d~v~ll~~G 106 (494)
...+|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 8899999999743
No 407
>KOG0927|consensus
Probab=99.22 E-value=1.3e-11 Score=127.83 Aligned_cols=106 Identities=25% Similarity=0.383 Sum_probs=89.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.+..++..+||+...++ .+.++||+|||+||.+|+.++..|.+|+|||||+|||..+...+.+.|.+.- | +
T Consensus 487 e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---G-g 558 (614)
T KOG0927|consen 487 EEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---G-G 558 (614)
T ss_pred HHHHHHHHHhCCCccccc----cchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---C-c
Confidence 356788999999865554 3578999999999999999999999999999999999999999999998752 3 8
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeE-eEeCChhh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQT-AYFGDTNK 116 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~-~~~G~~~~ 116 (494)
+|.++|+-. -|-+.++++.+..+|.+ .+.|....
T Consensus 559 vv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 559 VVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred eeeeechhh-HHHHHHHHhHhhccCceeecCccHHH
Confidence 899999965 78899999999987665 45665433
No 408
>KOG0062|consensus
Probab=99.22 E-value=9.1e-12 Score=128.37 Aligned_cols=106 Identities=28% Similarity=0.379 Sum_probs=86.8
Q ss_pred HHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEE
Q psy16346 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84 (494)
Q Consensus 5 ~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~ 84 (494)
+++|..+|.++-... .+.+.+|||-|-|+++||||..+|++|+|||||+.||..+..-+-+.|+.+ +.|+|+
T Consensus 179 ~~~L~glGFt~emq~----~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~li 250 (582)
T KOG0062|consen 179 DKILAGLGFTPEMQL----QPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLI 250 (582)
T ss_pred HHHHHhCCCCHHHHh----ccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEE
Confidence 337778888654332 357889999999999999999999999999999999999999999999764 379999
Q ss_pred EecCcchHHHhccCeEEEEeCCeE-eEeCChhhHHH
Q psy16346 85 TVHQPSSQIFHMFDKLLLLCNGQT-AYFGDTNKVVD 119 (494)
Q Consensus 85 ~~H~p~~~i~~~~d~v~ll~~G~~-~~~G~~~~~~~ 119 (494)
++|| +..+=+.|..|+=+++-++ .|.|+-++..+
T Consensus 251 VSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 251 VSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred Eecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 9999 5677778888888877666 46677665553
No 409
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.22 E-value=2.2e-11 Score=133.15 Aligned_cols=79 Identities=28% Similarity=0.380 Sum_probs=69.3
Q ss_pred cCCCCChHHHHHHHHHHHHh----------hCCCEeEEeCCC-CCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHH
Q psy16346 25 MKRGLSGGEKKRANIACELL----------TNPALMLLDEPT-SGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQI 93 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~----------~~p~~lllDEPt-sgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i 93 (494)
.+..||||||||++||++++ .+|++++||||| ++||+.....+.+.|+++ .|.+||+++|++. .
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~--~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDH--D 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchh--c
Confidence 45789999999999999887 589999999998 789999999999999987 3789999999964 4
Q ss_pred HhccCeEEEEeC-CeE
Q psy16346 94 FHMFDKLLLLCN-GQT 108 (494)
Q Consensus 94 ~~~~d~v~ll~~-G~~ 108 (494)
...+|++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 678999999985 554
No 410
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.21 E-value=7.6e-09 Score=101.54 Aligned_cols=201 Identities=11% Similarity=0.108 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhHHhh-cchhHHHHHHHHHHHHHHHHHHHhccC-CC------C---hhhHHHHHHHHHHHHHHHHHHHHH
Q psy16346 205 WTQFKVLSQRNFQEA-RPRMLSTLNWVQTIGLGIMAGLLWFQL-PR------T---EEALHDIQGWMFFSTTFWMLFAHF 273 (494)
Q Consensus 205 ~~Q~~~L~~R~~~~~-R~~~~~~~r~~~~i~~~ll~G~~f~~~-~~------~---~~~~~~~~g~lf~~~~~~~~~~~~ 273 (494)
++++..+.+|+++.. |++......+++.++.-++.|.+|-.. +. + .-...-..|.+-+.+....+.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--- 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--- 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 367899999999988 998877777888888888888888432 11 1 011122233333322222211
Q ss_pred HHHh-hhhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCC-ChhHHHHHHHHHHHHHHHHHH
Q psy16346 274 GALA-SFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQ-SPTVFITLLGFLLLNSIVAQS 351 (494)
Q Consensus 274 ~~~~-~f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~-~~~~f~~f~~~~~l~~~~~~s 351 (494)
.+.. ....|+..+.+=+... .+...+.+++.+...-..++..++...+.+. .|.+ +...+.......++......+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 1122333444444443 5778899999999988887776665555443 3553 223333333344455666778
Q ss_pred HHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--Cc---hhhhHhhHhhcHHHHHHHHHHH
Q psy16346 352 VGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NI---PYWLKWMQYLSMVHYAYQNMQI 424 (494)
Q Consensus 352 ~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~i---p~~~~Wl~yiSp~~Y~~~~l~~ 424 (494)
+|+++ |+++++.+.+..+.+++..+++..||.+.| .+ |.|++|+.++||+.|..|++-.
T Consensus 156 lgl~l--------------a~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 156 LGLAL--------------SNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHH--------------HHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 88888 888899988888888888889999999877 44 8899999999999999998853
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.2e-10 Score=125.97 Aligned_cols=92 Identities=28% Similarity=0.464 Sum_probs=83.0
Q ss_pred cCCCCChHHHHHHHHHHHHhhC-C-CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE
Q psy16346 25 MKRGLSGGEKKRANIACELLTN-P-ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~-p-~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l 102 (494)
....|||||.||+-+|..+=++ . =+++||||+.||.+....++++.|+++. +.|-|+|++.||+ ++...+|+|+=
T Consensus 478 ~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDe--dti~~AD~iID 554 (935)
T COG0178 478 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDE--DTIRAADHIID 554 (935)
T ss_pred cCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCH--HHHhhcCEEEe
Confidence 4567999999999999999765 2 3679999999999999999999999997 7899999999995 67899999999
Q ss_pred E------eCCeEeEeCChhhHHH
Q psy16346 103 L------CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 103 l------~~G~~~~~G~~~~~~~ 119 (494)
+ ++|++++.|+++++++
T Consensus 555 iGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 555 IGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eCCCCCcCCCEEEEccCHHHHHh
Confidence 8 5799999999999985
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=4.9e-11 Score=114.75 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=71.1
Q ss_pred CCCCChHHHHHHHHHHHH--hhCCCEeEEeCC---CCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeE
Q psy16346 26 KRGLSGGEKKRANIACEL--LTNPALMLLDEP---TSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKL 100 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l--~~~p~~lllDEP---tsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v 100 (494)
.+++|.|+++++.+++.+ +.+|+++++||| |+++|+...... .++.+.++.|.+++++||+ .++.+++|++
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~ 162 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEV 162 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcC
Confidence 468999999999999999 899999999999 889999888543 3355543458899999997 4789999999
Q ss_pred EEEeCCeEeEeCC
Q psy16346 101 LLLCNGQTAYFGD 113 (494)
Q Consensus 101 ~ll~~G~~~~~G~ 113 (494)
..+++|++...++
T Consensus 163 ~~i~~g~~~~~~~ 175 (222)
T cd03285 163 PNVKNLHVTALTD 175 (222)
T ss_pred CCeEEEEEEEEEe
Confidence 9999999987764
No 413
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.14 E-value=8.1e-11 Score=125.80 Aligned_cols=99 Identities=28% Similarity=0.405 Sum_probs=82.0
Q ss_pred hHHHHHHHHcCCcccccccccC-ccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLANCQHTIIGD-YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~-~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+.+.++|.+.||.+..+..=+. ..-+.||+|||||+++||.|+++|++++|||-|++||+.+...+.+.+++-. .+.
T Consensus 488 ~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~ 565 (604)
T COG4178 488 AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDA 565 (604)
T ss_pred HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCC
Confidence 4577899999999887653221 3467899999999999999999999999999999999999999999999743 589
Q ss_pred EEEEEecCcchHHHhccCeEEEEe
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
|||.+.|+|. +....++.+-+.
T Consensus 566 tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 566 TVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred EEEEeccchh--hHHHHhhheeec
Confidence 9999999974 456666655443
No 414
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.12 E-value=8.4e-11 Score=103.99 Aligned_cols=55 Identities=42% Similarity=0.674 Sum_probs=50.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCC
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTS 57 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPts 57 (494)
++++++++.+++.+..++.++.. ..+||||||||+.||++++.+|++++|||||+
T Consensus 83 ~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 83 ERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 46889999999999888888763 48999999999999999999999999999996
No 415
>PRK15066 inner membrane transport permease; Provisional
Probab=99.07 E-value=1.8e-07 Score=92.00 Aligned_cols=239 Identities=16% Similarity=0.165 Sum_probs=141.8
Q ss_pred HHHHHHHHHHhHHhh-cchhHHH-HHHHHHHHHHHHHHHHhcc-CCC-Ch--hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16346 205 WTQFKVLSQRNFQEA-RPRMLST-LNWVQTIGLGIMAGLLWFQ-LPR-TE--EALHDIQGWMFFSTTFWMLFAHFGALAS 278 (494)
Q Consensus 205 ~~Q~~~L~~R~~~~~-R~~~~~~-~r~~~~i~~~ll~G~~f~~-~~~-~~--~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 278 (494)
|+-++.+.+|+.+.. |++.... .-+++.++..++.|.++-. .+. +. --..-..|.+-+.....+. ......
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~---~~~~~~ 83 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSY---SNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 677889999999998 7764322 2344455566666655421 111 10 0111122333222222211 112222
Q ss_pred hhhhhhH-HHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16346 279 FPPEREV-INKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVG 357 (494)
Q Consensus 279 f~~er~v-~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i~ 357 (494)
+..+|.. ..++-...--+...+.+++.+...-...+..++...+.+...|.+... ...+....++........|+.+
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~-~~~~l~~~ll~~~~f~~~gl~~- 161 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH-WGIVLLTVLLTAILFSLGGLIN- 161 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH-HHHHHHHHHHHHHHHHHHHHHH-
Confidence 2233211 011112223577889999999887776666555555554444654222 2222222222222223346666
Q ss_pred cccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCcccc
Q psy16346 358 ACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQC 435 (494)
Q Consensus 358 ~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C 435 (494)
+++.++.+.+..+.+++..+++..||.+.| ++|.|++|+.++||+.|..|++=..-++ +.
T Consensus 162 -------------a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g-~~---- 223 (257)
T PRK15066 162 -------------AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLG-IS---- 223 (257)
T ss_pred -------------HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcC-CC----
Confidence 777788888888888889999999999998 9999999999999999999988533221 10
Q ss_pred CCCCCCccCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16346 436 ATQSKFDACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGYIVLRYFRR 492 (494)
Q Consensus 436 ~~~~~~~~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 492 (494)
+.+.|.++++++++.+++..++....|..++
T Consensus 224 --------------------------~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 224 --------------------------DVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred --------------------------CccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1235788999999999998888877765544
No 416
>KOG0066|consensus
Probab=99.05 E-value=3.7e-10 Score=114.17 Aligned_cols=94 Identities=31% Similarity=0.465 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.....|-.+||...+||+ .++.||||||-||++|..-+..|++|||||||++||..+...+.+.|++.. | .|
T Consensus 683 ~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---G-gV 754 (807)
T KOG0066|consen 683 EARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---G-GV 754 (807)
T ss_pred HHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---C-cE
Confidence 345567778998889985 678999999999999999999999999999999999999999999998762 3 78
Q ss_pred EEEecCcchHHHhccCeEEEEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
|+++|+-+ .|.+.-=.+.++.+
T Consensus 755 i~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 755 IMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred EEEecccc-eeeecCceEEEEcc
Confidence 99999954 33333224555544
No 417
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.05 E-value=2.7e-10 Score=114.15 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=95.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+.++..++.|.|.|.-.-.=|+...-.||.|||||+++-.|++-+-+|+++||=-+..||.-+..+.+.+-.+-|+.|+|
T Consensus 422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT 501 (546)
T COG4615 422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 (546)
T ss_pred HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence 46788899999887654433444566899999999999999999999999999999999999999998887777889999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCC
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~ 113 (494)
|+.++||- .-|..+||++.+.+|+++..-+
T Consensus 502 I~aIsHDd--~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 502 IFAISHDD--HYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred EEEEecCc--hhhhhHHHHHHHhcCceeeccc
Confidence 99999993 5689999999999999988643
No 418
>PRK03918 chromosome segregation protein; Provisional
Probab=99.04 E-value=5.3e-10 Score=128.62 Aligned_cols=77 Identities=27% Similarity=0.378 Sum_probs=67.7
Q ss_pred cCCCCChHHHHH------HHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccC
Q psy16346 25 MKRGLSGGEKKR------ANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFD 98 (494)
Q Consensus 25 ~~~~lSgGerkR------v~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d 98 (494)
.+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.++.++ ..+.+||++||++ ++...||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~-~~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYL-RKIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHH-hcCCEEEEEECCH--HHHHhCC
Confidence 467899999995 555567889999999999999999999999999999986 4578999999996 4678999
Q ss_pred eEEEEe
Q psy16346 99 KLLLLC 104 (494)
Q Consensus 99 ~v~ll~ 104 (494)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
No 419
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.00 E-value=1.2e-09 Score=127.02 Aligned_cols=80 Identities=25% Similarity=0.216 Sum_probs=68.5
Q ss_pred ccCCCCChHHHHHHHHHHHHhh--------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHh
Q psy16346 24 YMKRGLSGGEKKRANIACELLT--------NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH 95 (494)
Q Consensus 24 ~~~~~lSgGerkRv~ia~~l~~--------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~ 95 (494)
..++.|||||++|++||++|+. +|+++|+||||+|||+.+...+++.|+.+. +.|++|++++|.+. ..-+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~-~~g~~v~iisH~~~-l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALN-ASGKTIGVISHVEA-MKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HCCCEEEEEecHHH-HHHh
Confidence 4578999999999999999995 899999999999999999999999999997 56999999999743 3444
Q ss_pred ccCeEEEEeC
Q psy16346 96 MFDKLLLLCN 105 (494)
Q Consensus 96 ~~d~v~ll~~ 105 (494)
+-.+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 5556666653
No 420
>KOG2355|consensus
Probab=98.99 E-value=1.1e-09 Score=101.13 Aligned_cols=111 Identities=26% Similarity=0.345 Sum_probs=94.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+|-+++++.|++.-- .+...+|-||||||.|+..|++.-++|+|||-|-.||.-++..+++.+++-+.++|.|
T Consensus 128 ~Rre~LI~iLDIdl~-------WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat 200 (291)
T KOG2355|consen 128 ERREKLIDILDIDLR-------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT 200 (291)
T ss_pred hHhhhhhhheeccce-------EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence 355677777776421 1234589999999999999999999999999999999999999999999999889999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~~ 120 (494)
|+..||-- +.+.....++.-+++|+++-.-+.+++.++
T Consensus 201 IVYATHIF-DGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 201 IVYATHIF-DGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred EEEEeeec-cchhhcchhEEEecCCeeeeccccchhhhh
Confidence 99999995 478889999999999999987666666543
No 421
>PRK01156 chromosome segregation protein; Provisional
Probab=98.99 E-value=1.6e-09 Score=124.71 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=67.3
Q ss_pred cCCCCChHHHHHHHH------HHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc-C-cEEEEEecCcchHHHhc
Q psy16346 25 MKRGLSGGEKKRANI------ACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE-G-KTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 25 ~~~~lSgGerkRv~i------a~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~-g-~tii~~~H~p~~~i~~~ 96 (494)
.+..||||||+|+++ |++++.+|++++|||||+|||+.....+.+.++...+.. | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999976 488999999999999999999999999999998654343 3 48999999974 4589
Q ss_pred cCeEEEEe
Q psy16346 97 FDKLLLLC 104 (494)
Q Consensus 97 ~d~v~ll~ 104 (494)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 422
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=1.3e-09 Score=108.20 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCCCChHHHHHHHHHHHHh---------hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 26 KRGLSGGEKKRANIACELL---------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~---------~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
.+-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.+++. +.+ ++++|+.. .+.+.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~q~-ii~~~~~~-~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----VQT-FVTTTDLA-DFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----CCE-EEEeCCch-hccch
Confidence 3458999999999999985 699999999999999999999999999764 234 55555533 55666
Q ss_pred c---CeEEEEeCCeE
Q psy16346 97 F---DKLLLLCNGQT 108 (494)
Q Consensus 97 ~---d~v~ll~~G~~ 108 (494)
+ ++++-+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 68899999986
No 423
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=4.3e-09 Score=125.33 Aligned_cols=71 Identities=25% Similarity=0.303 Sum_probs=61.9
Q ss_pred CCCCChHHHH------HHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH----hcCcEEEEEecCcchHHHh
Q psy16346 26 KRGLSGGEKK------RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE----KEGKTVVVTVHQPSSQIFH 95 (494)
Q Consensus 26 ~~~lSgGerk------Rv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~----~~g~tii~~~H~p~~~i~~ 95 (494)
.+.||||||| |++||++++.+|++++|||||+|||+.+...+.+.|.++.+ ..|.+||+++|++. .+..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHH
Confidence 3579999999 99999999999999999999999999999999999988742 24789999999975 5655
Q ss_pred cc
Q psy16346 96 MF 97 (494)
Q Consensus 96 ~~ 97 (494)
++
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 54
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.84 E-value=7.3e-09 Score=98.25 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHH-HHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS-SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
.++++ .||++.+.+++.+|+++++|||++|+|+.....+.. .++.+. +.+.++|+++|++ ++.+.+|++..+++|
T Consensus 91 ~~~~e-~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~-~~~~~vi~~tH~~--~~~~~~~~~~~l~~~ 166 (202)
T cd03243 91 TFMAE-LLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL-EKGCRTLFATHFH--ELADLPEQVPGVKNL 166 (202)
T ss_pred eHHHH-HHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEECChH--HHHHHhhcCCCeEEE
Confidence 45555 455777788899999999999999999999888765 466665 5689999999985 667889999999999
Q ss_pred eEeEeCChhh
Q psy16346 107 QTAYFGDTNK 116 (494)
Q Consensus 107 ~~~~~G~~~~ 116 (494)
++...+..++
T Consensus 167 ~~~~~~~~~~ 176 (202)
T cd03243 167 HMEELITTGG 176 (202)
T ss_pred EEEEEecCCe
Confidence 9998876533
No 425
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.82 E-value=5.6e-09 Score=123.39 Aligned_cols=76 Identities=25% Similarity=0.324 Sum_probs=66.8
Q ss_pred cCCCCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeE
Q psy16346 25 MKRGLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKL 100 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v 100 (494)
.+..||||||+|++||++++ .+|++++||||++|||+.....+.+.++.++ + +.++|+++|+|. ....||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~-~-~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS-K-NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc-c-CCEEEEEEcChh--HHHHhhhH
Confidence 46789999999999999984 5779999999999999999999999999986 3 478999999975 35789999
Q ss_pred EEEe
Q psy16346 101 LLLC 104 (494)
Q Consensus 101 ~ll~ 104 (494)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8764
No 426
>PRK00064 recF recombination protein F; Reviewed
Probab=98.80 E-value=1.1e-08 Score=105.56 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=65.7
Q ss_pred cCCCCChHHHHHHHHHHHHh---------hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHh
Q psy16346 25 MKRGLSGGEKKRANIACELL---------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH 95 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~---------~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~ 95 (494)
....+|.||+|++.+|+.|+ .+|+++++|||+++||+..+..+++.++++ +..+++|+|++. .+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~ 344 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLAD 344 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhh
Confidence 34579999999999999885 689999999999999999999999988753 347888888864 4444
Q ss_pred cc--CeEEEEeCCeE
Q psy16346 96 MF--DKLLLLCNGQT 108 (494)
Q Consensus 96 ~~--d~v~ll~~G~~ 108 (494)
.+ ++++.+++|++
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 43 47889999987
No 427
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.79 E-value=1.1e-06 Score=86.23 Aligned_cols=167 Identities=23% Similarity=0.355 Sum_probs=121.4
Q ss_pred hhhHHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy16346 282 EREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCM 361 (494)
Q Consensus 282 er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~ 361 (494)
++..+.|=..+..-+ ..+++++.+.......+...+...+..+..|......+........+......++|.++
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~----- 189 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLL----- 189 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344444444444443 56677777777766666666666666666674444445555555555666667777755
Q ss_pred cccccccccc-eeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCC
Q psy16346 362 DMQSVGFFVG-ACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQ 438 (494)
Q Consensus 362 ~~~~~~~~~~-a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~ 438 (494)
+ ...++.+.+..++.++..++..++|.+.| .+|.|++|+.+++|..|+.+++-.....+. .
T Consensus 190 ---------~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~-~------ 253 (286)
T COG0842 190 ---------STFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW-R------ 253 (286)
T ss_pred ---------HHHHhhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC-c------
Confidence 4 35677788888888999999999999999 999999999999999999999876555421 0
Q ss_pred CCCccCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16346 439 SKFDACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGYIVLRYFRRP 493 (494)
Q Consensus 439 ~~~~~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 493 (494)
..+.|.++++++++.+++.+++...+|+.++.
T Consensus 254 -----------------------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 -----------------------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred -----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 01278899999999999999999999887764
No 428
>KOG0066|consensus
Probab=98.73 E-value=3.4e-09 Score=107.34 Aligned_cols=104 Identities=26% Similarity=0.416 Sum_probs=87.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
.+...+|.-||.++-.. +++....|||-|-||++||||..+|-+|+|||||+.||..+...+-++|+.+. +|
T Consensus 390 arARRILAGLGFskEMQ----~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KT 461 (807)
T KOG0066|consen 390 ARARRILAGLGFSKEMQ----ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KT 461 (807)
T ss_pred hHHHHHHhhcCCChhHh----cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----he
Confidence 46677888888865433 24566799999999999999999999999999999999999999999998863 69
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEe-CCh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYF-GDT 114 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~-G~~ 114 (494)
.++++|+-. .+-+.|..|+-|++.+..|+ |..
T Consensus 462 LLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 462 LLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred eEEEecccc-hHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999954 77788999999998887654 554
No 429
>PRK02224 chromosome segregation protein; Provisional
Probab=98.72 E-value=2.8e-08 Score=114.37 Aligned_cols=78 Identities=31% Similarity=0.426 Sum_probs=66.5
Q ss_pred CCCCChHHHH------HHHHHHHHhhC-----C-CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC-cEEEEEecCcchH
Q psy16346 26 KRGLSGGEKK------RANIACELLTN-----P-ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG-KTVVVTVHQPSSQ 92 (494)
Q Consensus 26 ~~~lSgGerk------Rv~ia~~l~~~-----p-~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~~H~p~~~ 92 (494)
+..||||||+ |++++++++.+ | +++++||||+|||+.....+++.|+.++ ..| .+||+++|++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~-~~~~~qviiish~~~-- 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMR-RLGVEQIVVVSHDDE-- 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHH-hcCCCeEEEEECChH--
Confidence 5689999999 89999888863 3 6799999999999999999999999987 445 48999999974
Q ss_pred HHhccCeEEEEeCC
Q psy16346 93 IFHMFDKLLLLCNG 106 (494)
Q Consensus 93 i~~~~d~v~ll~~G 106 (494)
....+|+++.+.+.
T Consensus 856 ~~~~ad~~~~~~~~ 869 (880)
T PRK02224 856 LVGAADDLVRVEKD 869 (880)
T ss_pred HHHhcCeeEEeecC
Confidence 45789999999643
No 430
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.71 E-value=2.4e-08 Score=118.14 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=67.7
Q ss_pred cCCCCChHHHHHHHHHHHHhh----CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeE
Q psy16346 25 MKRGLSGGEKKRANIACELLT----NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKL 100 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~----~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v 100 (494)
.+..||||||+++++|.+++. +|++++||||++|||+.....+.+.|++++ . +..+|++||++ .....+|++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~-~-~~~~i~~t~~~--~~~~~~d~~ 1146 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA-G-EAQFIVVSLRS--PMIEYADRA 1146 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc-C-CCeEEEEECcH--HHHHhccee
Confidence 356899999999999999985 679999999999999999999999999986 3 47899999997 367899999
Q ss_pred EEEe
Q psy16346 101 LLLC 104 (494)
Q Consensus 101 ~ll~ 104 (494)
+.+.
T Consensus 1147 ~~~~ 1150 (1164)
T TIGR02169 1147 IGVT 1150 (1164)
T ss_pred EeEE
Confidence 8875
No 431
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.68 E-value=5.5e-08 Score=98.42 Aligned_cols=102 Identities=27% Similarity=0.356 Sum_probs=85.3
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
..++|+..||.+.-- -....++||-|||.|+.||.++..+|.+++.||=.+.||+.++..+.+-+.+++++.|.|.+
T Consensus 486 AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 486 AVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred HHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 457888888864322 12456899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcchHHHhc-cCeEEEEeCCeEe
Q psy16346 84 VTVHQPSSQIFHM-FDKLLLLCNGQTA 109 (494)
Q Consensus 84 ~~~H~p~~~i~~~-~d~v~ll~~G~~~ 109 (494)
+++|+|. .+-.+ -|+++++.-|...
T Consensus 563 vvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 563 VVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EEecCHH-HHhccCCceeEEeeccccc
Confidence 9999984 33344 6888888766543
No 432
>KOG0060|consensus
Probab=98.64 E-value=9.3e-08 Score=100.45 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=78.4
Q ss_pred hHHHHHHHHcCCcccccccccC------ccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANCQHTIIGD------YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
+++.+.|+..+|.|..+..-|= .....||+||+||+++||.+.++|++-+|||.||.+|.+....+.+.++
T Consensus 538 ~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r--- 614 (659)
T KOG0060|consen 538 EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR--- 614 (659)
T ss_pred HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH---
Confidence 3567788888888776543221 1346799999999999999999999999999999999998888887775
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
+.|.|.|-+.|.++ +.+.=|.++-|++
T Consensus 615 -~~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 615 -EMGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred -HcCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 45899999999964 5666677777763
No 433
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.64 E-value=3.4e-08 Score=92.38 Aligned_cols=80 Identities=23% Similarity=0.215 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM-SSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
..+|+|++|...+. ..+.+|+++++|||++|+|+.....+. ..++.+.++.|.++|++||++ ++.+.+|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 45676666533332 224599999999999999999887775 556777633488999999996 57777775333334
Q ss_pred CeEe
Q psy16346 106 GQTA 109 (494)
Q Consensus 106 G~~~ 109 (494)
++..
T Consensus 137 ~~~~ 140 (185)
T smart00534 137 LHMS 140 (185)
T ss_pred EEEE
Confidence 4443
No 434
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.58 E-value=4.1e-07 Score=87.23 Aligned_cols=73 Identities=33% Similarity=0.469 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEE
Q psy16346 28 GLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLL 103 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll 103 (494)
.+|||||++++||.-|+ .+.++++||||.++||...+..+.+.|+++. + +.=+|++||++ .+++.+|+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~-~-~~Q~ii~Th~~--~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS-K-QSQFIITTHNP--EMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT-T-TSEEEEE-S-H--HHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccc--cccccccccccc
Confidence 68999999999987764 4678999999999999999999999999986 3 46788999996 679999988776
Q ss_pred e
Q psy16346 104 C 104 (494)
Q Consensus 104 ~ 104 (494)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 4
No 435
>PRK14079 recF recombination protein F; Provisional
Probab=98.55 E-value=1.6e-07 Score=96.61 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHHHHHh---------hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccC
Q psy16346 28 GLSGGEKKRANIACELL---------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFD 98 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~---------~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d 98 (494)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.+.+. ..++|.+++.| +.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCCCC-----CCCc
Confidence 47999999999999998 899999999999999999999999888643 24555555543 4799
Q ss_pred eEEEEeCCeEeEeCC
Q psy16346 99 KLLLLCNGQTAYFGD 113 (494)
Q Consensus 99 ~v~ll~~G~~~~~G~ 113 (494)
+++.+.+|+..-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999998865554
No 436
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=1.4e-07 Score=97.48 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=54.9
Q ss_pred CCCChHHHHHHHHHHHHhh---------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 27 RGLSGGEKKRANIACELLT---------NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~---------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
..+|.||+|++.+|..|+. +|++++||||+++||+..+..+++.+++. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 4689999999999999999 99999999999999999999999999753 679999999864
No 437
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.43 E-value=6.6e-07 Score=103.20 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=69.0
Q ss_pred cCCCCChHHHHHHHHHHHHh------hC--CCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 25 MKRGLSGGEKKRANIACELL------TN--PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~------~~--p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
.+..|||||+-.++||.+|+ .+ -+++||||||..||+.....+++.|..+. ..|.+|+++||++ +..+.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~-~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL-SDGRQIIIISHVE--ELKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEeChH--HHHHh
Confidence 67889999999988877773 35 68999999999999999999999999997 5589999999995 67889
Q ss_pred cCeEEEEeC
Q psy16346 97 FDKLLLLCN 105 (494)
Q Consensus 97 ~d~v~ll~~ 105 (494)
+|.++..+.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998874
No 438
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.43 E-value=6.5e-06 Score=74.49 Aligned_cols=128 Identities=11% Similarity=0.046 Sum_probs=87.7
Q ss_pred hhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhH---HHHHHHHHHHHHHHHHHHHHH
Q psy16346 279 FPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTV---FITLLGFLLLNSIVAQSVGFF 355 (494)
Q Consensus 279 f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~---f~~f~~~~~l~~~~~~s~g~~ 355 (494)
...|+..+.|-+..- -+.+.|+++|.+...-..++...+...+.+. .|.+-... .+.+++...+......+++..
T Consensus 14 ~dr~~G~~~~l~~tP-~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLP-IHRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777776 4788999999999999999888877777754 48652222 222222223333333344444
Q ss_pred hhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHH
Q psy16346 356 VGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQ 423 (494)
Q Consensus 356 i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~ 423 (494)
+ +...++.+. .....++.+|+...+|.+.| +||.|++|+.+++|+.|+.+++=
T Consensus 92 ~--------------a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 M--------------ALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred H--------------HHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 4 333444443 33446677788888888899 99999999999999999999874
No 439
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.41 E-value=5.4e-07 Score=85.60 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=50.6
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCcEEEEEecCcc
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM-SSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~~H~p~ 90 (494)
...+|+|++|+ +.+.+++++|+++++|||++|+|+.....+. ..++.+. +.|.++|++||+..
T Consensus 89 ~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~-~~~~~~i~~TH~~~ 152 (204)
T cd03282 89 LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI-KKESTVFFATHFRD 152 (204)
T ss_pred hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHH
Confidence 34578888865 5667788999999999999999998876654 5677776 56999999999953
No 440
>KOG0063|consensus
Probab=98.39 E-value=3e-07 Score=93.51 Aligned_cols=96 Identities=27% Similarity=0.390 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.+.++++-|-+++..|. .+.+|||||.||++++..|=..+++++.|||.+-||++++..--+.+++.--...+|-
T Consensus 436 F~~dvmkpL~ie~i~dq-----evq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkta 510 (592)
T KOG0063|consen 436 FVNDVMKPLQIENIIDQ-----EVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTA 510 (592)
T ss_pred HHHhhhhhhhHHHHHhH-----HhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchh
Confidence 46677888888877775 4578999999999999999999999999999999999999998888888654567899
Q ss_pred EEEecCcchHHHhccCeEEEEe
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.++.|+---.. =++||+++..
T Consensus 511 fvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 511 FVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhhhhHHHHHH-hhcceeEEEe
Confidence 99999943222 2588887764
No 441
>KOG0063|consensus
Probab=98.35 E-value=8.1e-07 Score=90.38 Aligned_cols=96 Identities=24% Similarity=0.305 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
..+++++.+.|.+..+.- ...|||||-||.+||++.+.+.++.++|||.+-||...+..-...|+.+. ...+=|
T Consensus 193 ~~~~~~~~~~L~~~~~re-----~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~-~p~~Yi 266 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDRE-----VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLI-NPDRYI 266 (592)
T ss_pred cHHHHHHHHHHhhHHHhh-----hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhh-CCCCeE
Confidence 356778888888777653 46799999999999999999999999999999999999999999999998 567899
Q ss_pred EEEecCcchHHHhccCeEEEEeC
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
|++.|+.+ ..--+.|-+..|.+
T Consensus 267 IVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 267 IVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred EEEEeech-HHHhhhcceeEEec
Confidence 99999975 34445777777753
No 442
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.34 E-value=2e-06 Score=81.38 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHhh--CCCEeEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCcEEEEEecCcchHHH
Q psy16346 31 GGEKKRANIACELLT--NPALMLLDEPTSGLDSHAAYSLM-SSLKRYAEKEGKTVVVTVHQPSSQIF 94 (494)
Q Consensus 31 gGerkRv~ia~~l~~--~p~~lllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~~H~p~~~i~ 94 (494)
..|++|+.-+.+.+. +|+++++|||++|+|+..+..+. ..++++. +.|.++|+++|++. .+.
T Consensus 88 ~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~-~~~~tiiivTH~~~-~~~ 152 (199)
T cd03283 88 YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLK-NKNTIGIISTHDLE-LAD 152 (199)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHH-HCCCEEEEEcCcHH-HHH
Confidence 356677776677777 99999999999999999998875 4788886 56899999999975 443
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.33 E-value=1.6e-06 Score=83.18 Aligned_cols=65 Identities=29% Similarity=0.454 Sum_probs=54.5
Q ss_pred cCCCCChHHHHHHHHHHHHhhCC---CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 25 MKRGLSGGEKKRANIACELLTNP---ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p---~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
....+|.|+||.+.+...+...+ .++++|||-++|+|..+..+++.+++.++ .+.-+|+|||.|.
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 45678999999999999888766 89999999999999999999999998874 5789999999984
No 444
>KOG0064|consensus
Probab=98.32 E-value=3.7e-07 Score=94.97 Aligned_cols=84 Identities=29% Similarity=0.394 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCcccccccccC----ccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLANCQHTIIGD----YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~----~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
..+.+|+.+.|++....-.|= ....-||||||||+.+||.+-++|+.-+|||.||...++....+.+..| ..
T Consensus 583 dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~ 658 (728)
T KOG0064|consen 583 DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DA 658 (728)
T ss_pred HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hc
Confidence 456677777777765544431 1345699999999999999999999999999999999888877777665 45
Q ss_pred CcEEEEEecCcc
Q psy16346 79 GKTVVVTVHQPS 90 (494)
Q Consensus 79 g~tii~~~H~p~ 90 (494)
|.+.+-++|+|+
T Consensus 659 gi~llsithrps 670 (728)
T KOG0064|consen 659 GISLLSITHRPS 670 (728)
T ss_pred CceEEEeecCcc
Confidence 899999999997
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.28 E-value=3.3e-06 Score=78.49 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=64.0
Q ss_pred ccCCCCChHHHH------HHHHHHHHhhCCCEeEEeCCCCCcC---HHHHHHHHHHHHHHHHhcCcEEEEEecCcch---
Q psy16346 24 YMKRGLSGGEKK------RANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS--- 91 (494)
Q Consensus 24 ~~~~~lSgGerk------Rv~ia~~l~~~p~~lllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~--- 91 (494)
..+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.++ +.|.|+++++|+...
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~-~~g~tvi~v~~~~~~~~~ 145 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALK-RFGVTTLLTSEQSGLEGT 145 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHH-HCCCEEEEEeccccCCCc
Confidence 345678999988 4444444567999999999999999 888888889998887 569999999998653
Q ss_pred -----HHHhccCeEEEEe
Q psy16346 92 -----QIFHMFDKLLLLC 104 (494)
Q Consensus 92 -----~i~~~~d~v~ll~ 104 (494)
.+..++|.++.|.
T Consensus 146 ~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 146 GFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCcCceeEeeeEEEEEE
Confidence 2677899999886
No 446
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.25 E-value=1.4e-06 Score=83.44 Aligned_cols=87 Identities=26% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCCChHHHHHH----HHHHHH--hhCCCEeEEeCC---CCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhcc
Q psy16346 27 RGLSGGEKKRA----NIACEL--LTNPALMLLDEP---TSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMF 97 (494)
Q Consensus 27 ~~lSgGerkRv----~ia~~l--~~~p~~lllDEP---tsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~ 97 (494)
..+|+|+.+.. .++..+ +.+|+++++||| |+++|.... ....++.+.+..+.++|++||++ ++.+++
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~ 159 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELE 159 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHh
Confidence 35677766542 355554 579999999999 888887552 23344445433388999999995 678889
Q ss_pred CeEEEEeCCeEeEeCChhhH
Q psy16346 98 DKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 98 d~v~ll~~G~~~~~G~~~~~ 117 (494)
|++.-+.+|++...+..+++
T Consensus 160 ~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 160 GKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hcCCCeEEEEEEEEeeCCeE
Confidence 98887888988877765544
No 447
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.23 E-value=1.8e-06 Score=102.93 Aligned_cols=59 Identities=32% Similarity=0.408 Sum_probs=51.8
Q ss_pred CCCCChHHHHHHH----HHHH--------HhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 26 KRGLSGGEKKRAN----IACE--------LLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 26 ~~~lSgGerkRv~----ia~~--------l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
..+||||||||+. +|++ +..+|++++||||++|||+.....+++.++++ |.++|+++|.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccc
Confidence 5789999999996 4644 55899999999999999999999999999876 6788999887
No 448
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.16 E-value=4.4e-06 Score=79.95 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=51.7
Q ss_pred CCCC--hHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHH-HHHHHHHHHh--cCcEEEEEecCcc
Q psy16346 27 RGLS--GGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL-MSSLKRYAEK--EGKTVVVTVHQPS 90 (494)
Q Consensus 27 ~~lS--gGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i-~~~l~~l~~~--~g~tii~~~H~p~ 90 (494)
.++| .-|.||++++++++.+|+++++|||++|+|+.....+ ...++++.+. .+.++|++||++.
T Consensus 87 ~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 87 SGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred hccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 3455 5678999999999999999999999999999875555 5688888643 1358999999964
No 449
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.13 E-value=3.4e-06 Score=95.12 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=63.1
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHH-HHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS-SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
...+|+|+++++.|++++ ++|+++++|||++|+|+.....+.. .++.+. +.|.++|++||++. ......|+..+.
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~-~~~~~vIitTH~~e-l~~~~~~~~~v~- 463 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR-KRGAKIIATTHYKE-LKALMYNREGVE- 463 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECChHH-HHHHHhcCCCeE-
Confidence 456899999999999988 8999999999999999999988865 677775 56899999999953 333345544443
Q ss_pred CCeEeE
Q psy16346 105 NGQTAY 110 (494)
Q Consensus 105 ~G~~~~ 110 (494)
++.+.+
T Consensus 464 ~~~~~~ 469 (782)
T PRK00409 464 NASVEF 469 (782)
T ss_pred EEEEEE
Confidence 445544
No 450
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.10 E-value=6.3e-06 Score=67.70 Aligned_cols=49 Identities=37% Similarity=0.421 Sum_probs=37.8
Q ss_pred cCCCCChHHH-HHHHHHHHH------hh------CCCEeEEeCCCCCcCHHHHHHHHHHHHH
Q psy16346 25 MKRGLSGGEK-KRANIACEL------LT------NPALMLLDEPTSGLDSHAAYSLMSSLKR 73 (494)
Q Consensus 25 ~~~~lSgGer-kRv~ia~~l------~~------~p~~lllDEPtsgLD~~~~~~i~~~l~~ 73 (494)
..+++||||| ..+.++.++ -. .|++++||||+++||+.....+++.+++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4578999999 445544433 22 3789999999999999999999999874
No 451
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.08 E-value=6e-06 Score=69.53 Aligned_cols=48 Identities=38% Similarity=0.539 Sum_probs=42.0
Q ss_pred CcccCHhHHHh-hcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy16346 447 STYIPVDAILE-SQGSS-LPLWCNTLILIGFLVFFRTLGYIVLRYFRRPG 494 (494)
Q Consensus 447 ~~~~~g~~~L~-~~~~~-~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 494 (494)
..+++|+++|+ .++++ .++|||++|+++|+++|.++.++++.+.+.++
T Consensus 28 ~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 28 STYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred ccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34778999998 67885 88999999999999999999999999887653
No 452
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.04 E-value=0.0016 Score=63.41 Aligned_cols=187 Identities=15% Similarity=0.119 Sum_probs=98.3
Q ss_pred HHHHHHhHHhh-cchhHHHHHHHHHHHHHHHHHHHhcc---CC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy16346 209 KVLSQRNFQEA-RPRMLSTLNWVQTIGLGIMAGLLWFQ---LP-RTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPER 283 (494)
Q Consensus 209 ~~L~~R~~~~~-R~~~~~~~r~~~~i~~~ll~G~~f~~---~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er 283 (494)
+.+.||+++.. |.|..+..-.+..++.|+.. ..+.+ .. .+..+.+.-.+...+ .+..+.+.. + .
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~l-~-------~ 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPAI-T-------M 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHHH-H-------H
Confidence 46789999999 88877654444444444321 22211 11 111122221111111 111111111 1 2
Q ss_pred hHHHHhhcCCCC--------ChHHHHHHHHHHHHhHHHHhHh---hhhhhhhcccCC-C--ChhHHHHHHHHHHHHHHHH
Q psy16346 284 EVINKERLSGAY--------RLSAYYLAKMVGELPLTITLPA---VYHLISYPMLGL-Q--SPTVFITLLGFLLLNSIVA 349 (494)
Q Consensus 284 ~v~~rE~~~~~Y--------~~~ay~la~~l~~lp~~~~~~~---if~~i~Y~m~gl-~--~~~~f~~f~~~~~l~~~~~ 349 (494)
..+.|||++|.. +.+.++++|.++-.-...+... ++.....+.... . +...++...+..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 466777777753 4678899999988755443332 222222221111 1 2333433334444555667
Q ss_pred HHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcc-cCCc--hhhhHhhHhhcHHHHHHHHH
Q psy16346 350 QSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYL-ATNI--PYWLKWMQYLSMVHYAYQNM 422 (494)
Q Consensus 350 ~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~Wl~yiSp~~Y~~~~l 422 (494)
.++|.++ |+.++|...|..++..+... ++.|+. +.++ |++.+|+.|+||.+|-.+..
T Consensus 151 ~aig~~i--------------Ssl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~~ 210 (240)
T TIGR03518 151 TAIGLFA--------------SSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHYESIS 210 (240)
T ss_pred HHHHHHH--------------HHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHHHHHH
Confidence 7889888 99988888876655433222 222322 2244 88999999999987765433
No 453
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=0.0026 Score=62.73 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=122.6
Q ss_pred cHHHHHHHHHHHhHHhh-cchhH-HHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHH--HHHHhh
Q psy16346 203 SFWTQFKVLSQRNFQEA-RPRML-STLNWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAH--FGALAS 278 (494)
Q Consensus 203 s~~~Q~~~L~~R~~~~~-R~~~~-~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~--~~~~~~ 278 (494)
..++.+..|.+|+++.. |+..+ ..--++..+++.++.+.+|-.+-+.. .-+..-.++..+..+.+.+. ..+...
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~~~~~l~~G~~~w~f~~~~i~~~~~s 92 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLNFLAYLLAGLILWFFFSEAISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45677888999999998 75543 22245555566666666553221111 11222222333333333221 233344
Q ss_pred hhhhhhHHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16346 279 FPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGA 358 (494)
Q Consensus 279 f~~er~v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i~~ 358 (494)
+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.. +..+........+..+.+.++|+++|.
T Consensus 93 ~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~~~l~~~~~l~~l~l~~~g~~l~~a~ 167 (263)
T COG1682 93 VVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SWHWLLLLPALLLLILFSVGLGLILAS 167 (263)
T ss_pred hhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555433 488899999999998777777666655555544444 444444444555556667777888733
Q ss_pred ccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcC
Q psy16346 359 CCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFS 428 (494)
Q Consensus 359 ~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~ 428 (494)
. +...+|.+... . .++-+++..+|-+=+ ++|.-++|+.++||+.|-.|.+=..-++
T Consensus 168 l-----------~v~fRD~~~i~--~-~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~ 225 (263)
T COG1682 168 L-----------GVRFRDLGQIL--G-VVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLG 225 (263)
T ss_pred H-----------hhhcccHHHHH--H-HHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 2 44555554332 2 344445556776655 9999999999999999999998666554
No 454
>PRK13695 putative NTPase; Provisional
Probab=97.89 E-value=2.5e-05 Score=72.08 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEeEEeCC--CCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 27 RGLSGGEKKRANIACELLTNPALMLLDEP--TSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~p~~lllDEP--tsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
..+||+|+.+..+.+..+.+|+++++||| +.++| ....+.+.++. +.|+++|+++|+. .+....|++..+.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~-~~~~~~i~v~h~~--~~~~~~~~i~~~~ 149 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVL-DSEKPVIATLHRR--SVHPFVQEIKSRP 149 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHH-hCCCeEEEEECch--hhHHHHHHHhccC
Confidence 45899999999999999999999999995 43444 34566666665 5689999999983 5667899999999
Q ss_pred CCeEeEeC
Q psy16346 105 NGQTAYFG 112 (494)
Q Consensus 105 ~G~~~~~G 112 (494)
+|++...-
T Consensus 150 ~~~i~~~~ 157 (174)
T PRK13695 150 GGRVYELT 157 (174)
T ss_pred CcEEEEEc
Confidence 99997763
No 455
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.87 E-value=2.1e-05 Score=88.71 Aligned_cols=63 Identities=29% Similarity=0.370 Sum_probs=55.5
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHH-HHHHHHHHHhcCcEEEEEecCcc
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL-MSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i-~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
...+|+|++++..|.+.+ .+|+++++|||++|+|+.....+ ...++.+. +.|.++|++||++.
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~-~~g~~viitTH~~e 446 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL-KQNAQVLITTHYKE 446 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHH
Confidence 456899999999998876 78999999999999999999999 46788876 56899999999964
No 456
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.85 E-value=2e-05 Score=75.21 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCC-----CCcCHHHHHHHHHHHHHHH
Q psy16346 33 EKKRANIACELLTNPALMLLDEPT-----SGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 33 erkRv~ia~~l~~~p~~lllDEPt-----sgLD~~~~~~i~~~l~~l~ 75 (494)
|++++.||++++.+|+++++|||| +|||+.....+.+.+++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999999987
No 457
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.72 E-value=9.8e-05 Score=73.09 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=47.9
Q ss_pred HHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH-H-----------HhccCeEEEEeCCe
Q psy16346 40 ACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ-I-----------FHMFDKLLLLCNGQ 107 (494)
Q Consensus 40 a~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~-i-----------~~~~d~v~ll~~G~ 107 (494)
......+|+++++|||++ ...+...++.+ +.|.++|+|+|++..+ + ...|||+++|++|+
T Consensus 188 ~~i~~~~P~villDE~~~------~e~~~~l~~~~--~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGR------EEDVEALLEAL--HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHhCCCCEEEEeCCCc------HHHHHHHHHHH--hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 334447999999999974 23344555554 3599999999986432 2 26799999999887
Q ss_pred EeEeCChhhH
Q psy16346 108 TAYFGDTNKV 117 (494)
Q Consensus 108 ~~~~G~~~~~ 117 (494)
..|+++++
T Consensus 260 --~~g~~~~i 267 (270)
T TIGR02858 260 --GPGTVEAV 267 (270)
T ss_pred --CCCceeec
Confidence 66666554
No 458
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.70 E-value=7e-05 Score=85.36 Aligned_cols=70 Identities=24% Similarity=0.184 Sum_probs=60.6
Q ss_pred HhhCCCEeEEeCCCCCc-CHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHH---------hccCeEEEEeCCeEeEeC
Q psy16346 43 LLTNPALMLLDEPTSGL-DSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIF---------HMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 43 l~~~p~~lllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~---------~~~d~v~ll~~G~~~~~G 112 (494)
+..+|+++++|||+.+| |+..+..+.+.+++++ +.|.+++++||+|. ++. +.||..++|.+|++...|
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~R-K~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLR-KANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccc
Confidence 35799999999999999 7999999999999987 56889999999986 443 689999999999987776
Q ss_pred Ch
Q psy16346 113 DT 114 (494)
Q Consensus 113 ~~ 114 (494)
+.
T Consensus 727 ~~ 728 (818)
T PRK13830 727 TR 728 (818)
T ss_pred hH
Confidence 43
No 459
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.66 E-value=0.019 Score=56.50 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=85.8
Q ss_pred HHHHhhcCCC--------CChHHHHHHHHHHHHhHHHH---hHhhh-hh-hhhccc-CCC-ChhHHHHHHHHHHHHHH--
Q psy16346 285 VINKERLSGA--------YRLSAYYLAKMVGELPLTIT---LPAVY-HL-ISYPML-GLQ-SPTVFITLLGFLLLNSI-- 347 (494)
Q Consensus 285 v~~rE~~~~~--------Y~~~ay~la~~l~~lp~~~~---~~~if-~~-i~Y~m~-gl~-~~~~f~~f~~~~~l~~~-- 347 (494)
.+.+|+++|. ++.+.++++|.++.+...++ ...+- .+ ..++.. |.+ +...+...........+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 5667777772 67789999999999887432 11111 11 122221 222 33333333322222222
Q ss_pred -HHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhccc-C-CchhhhH-----hhHhhcHHHHHH
Q psy16346 348 -VAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLA-T-NIPYWLK-----WMQYLSMVHYAY 419 (494)
Q Consensus 348 -~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i-~-~ip~~~~-----Wl~yiSp~~Y~~ 419 (494)
+..++++++ |+.+++...|..++..+............ . .-+.+.. .+.+++|..+ +
T Consensus 169 ~~~~sl~~~~--------------S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~ 233 (277)
T PF12679_consen 169 LVFISLGLLI--------------SSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-F 233 (277)
T ss_pred HHHHHHHHHH--------------HHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-H
Confidence 447788888 88999888887776655443332222222 1 1222222 3356666542 2
Q ss_pred HHHHHHhcCCCCccccCCCCCCccCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy16346 420 QNMQIVEFSEGLPIQCATQSKFDACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGYIVL 487 (494)
Q Consensus 420 ~~l~~nef~~~~~~~C~~~~~~~~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L 487 (494)
+.+........ . .....|.++++++++.+++..+++...
T Consensus 234 ~~~~~~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~v~l~la~~~F 272 (277)
T PF12679_consen 234 NLLIGSILGGG-F----------------------------VWLSTWPSLLILLAYTLVFLALAYYRF 272 (277)
T ss_pred HHHHHHhhccc-c----------------------------chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222210 0 003578899999999999999999543
No 460
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.66 E-value=0.014 Score=57.70 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHH
Q psy16346 345 NSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNM 422 (494)
Q Consensus 345 ~~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l 422 (494)
..+.+.++|++++. ++...||.+.... +++.+++..+|-+-+ .+|.+++|+.+.||+.+..|+.
T Consensus 158 ~~l~~~glglils~-----------l~v~~rDi~~i~~---~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~ 223 (264)
T PRK15176 158 AWLLGLSFGYFCDA-----------LSERFPLVYKAVP---VMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIV 223 (264)
T ss_pred HHHHHHHHHHHHHH-----------HHHhCccHHHHHH---HHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHH
Confidence 44555677777733 2555676654433 444445566775544 8999999999999999999988
Q ss_pred HHHhcCCCCccccCCCCCCccCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16346 423 QIVEFSEGLPIQCATQSKFDACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGYIVLRYFRRP 493 (494)
Q Consensus 423 ~~nef~~~~~~~C~~~~~~~~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 493 (494)
=..-+++ .. ..|.+.....++.++..+++++..|+.|.+
T Consensus 224 R~~~~~~-~~-------------------------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 262 (264)
T PRK15176 224 REGMFEG-YH-------------------------------SLYLEPFYPLAFSATLFLAGLIFHLICDTE 262 (264)
T ss_pred HHHHhcC-cC-------------------------------ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6655542 10 012233566677777777888887777655
No 461
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.60 E-value=0.00014 Score=69.86 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=52.8
Q ss_pred CCCCh--HHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHH-HHHHHHhcCcEEEEEecCcc
Q psy16346 27 RGLSG--GEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 27 ~~lSg--GerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~-l~~l~~~~g~tii~~~H~p~ 90 (494)
.++|. .|-+|++-....+++|+++++|||.+|+|+.....+... ++.+.+..+.+++++||++.
T Consensus 88 ~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 88 KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 34443 567888777777899999999999999999999999888 77887434899999999964
No 462
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.59 E-value=1.5e-05 Score=80.17 Aligned_cols=155 Identities=21% Similarity=0.398 Sum_probs=0.0
Q ss_pred hhhhhh--HHHHhhcCCCCChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccC---CCChhHHHHHHHHHHHHHHHHHHHH
Q psy16346 279 FPPERE--VINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLG---LQSPTVFITLLGFLLLNSIVAQSVG 353 (494)
Q Consensus 279 f~~er~--v~~rE~~~~~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~g---l~~~~~f~~f~~~~~l~~~~~~s~g 353 (494)
..+||. +..|-+.+| .+...|++++.+..+...++..+++..+ +.| +... .+...++..++..++..+++
T Consensus 182 i~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~ 256 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG-NFLLLLLLLLLFSLAFISFG 256 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc-chHHHHHHHHHHHHHHHHHH
Confidence 334444 455555666 6888999999999999999888877764 334 3322 33434455556666677777
Q ss_pred HHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC--CchhhhHhhHhhcHHHHHHHHHHHHhcCCCC
Q psy16346 354 FFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT--NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGL 431 (494)
Q Consensus 354 ~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~ 431 (494)
+++ ++++++...|..+++++.++.+.++|.+.+ ++|.+++|+.++.|..|..+++...-++ +
T Consensus 257 ~~i--------------s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~-~- 320 (344)
T PF12698_consen 257 FLI--------------SSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIYG-D- 320 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH--------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHHh-c-
Confidence 777 999999999988877777755555555555 8999999999999999988877443221 0
Q ss_pred ccccCCCCCCccCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q psy16346 432 PIQCATQSKFDACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGY 484 (494)
Q Consensus 432 ~~~C~~~~~~~~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~ 484 (494)
..+.|.++++++++.+++.+++.
T Consensus 321 ------------------------------~~~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 321 ------------------------------WSEIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp -----------------------------------------------------
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 01256677777777777766654
No 463
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.43 E-value=7.1e-05 Score=73.24 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=63.2
Q ss_pred cCCCCChHH--------HHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHH-HHHHHHHHHHhcCcEEEEEecCcchHHHh
Q psy16346 25 MKRGLSGGE--------KKRANIACELLTNPALMLLDEPTSGLDSHAAYS-LMSSLKRYAEKEGKTVVVTVHQPSSQIFH 95 (494)
Q Consensus 25 ~~~~lSgGe--------rkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~-i~~~l~~l~~~~g~tii~~~H~p~~~i~~ 95 (494)
..+.+|||+ +||+++|+++..+++|.++ ||+.+|+.+... ++ +.++. ..+.|.|+.+|+.. ...
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~la--~~~ 198 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRLA--ERR 198 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHHh--hCC
Confidence 345679999 9999999999899999999 999999654443 44 45543 35789999999975 378
Q ss_pred ccCeEEEEeCCeE
Q psy16346 96 MFDKLLLLCNGQT 108 (494)
Q Consensus 96 ~~d~v~ll~~G~~ 108 (494)
.+|.|.+|++|+.
T Consensus 199 ~~paI~vl~s~sr 211 (249)
T cd01128 199 IFPAIDILKSGTR 211 (249)
T ss_pred CCCeEEEcCCCCc
Confidence 9999999999987
No 464
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.42 E-value=0.00038 Score=66.96 Aligned_cols=59 Identities=24% Similarity=0.301 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHH-HHHHHHHHHhcCcEEEEEecCcc
Q psy16346 32 GEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL-MSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 32 GerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i-~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
.|-+|++-...-+.+|+++++|||.+|.|+.....+ ...++.+.+..+.++|++||++.
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 477888888788889999999999999998887775 56777777444889999999964
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.37 E-value=0.00032 Score=68.26 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=57.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHH----------------HHhhCCCEeEEeCCCC------Cc
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIAC----------------ELLTNPALMLLDEPTS------GL 59 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~----------------~l~~~p~~lllDEPts------gL 59 (494)
+|+..+.+.+++++..+... ..+|+.+++.+++ ....+|+++++| |++ .+
T Consensus 58 ~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~ 129 (239)
T cd01125 58 RRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSEN 129 (239)
T ss_pred HHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcC
Confidence 45666777776654443222 1245555554433 234799999999 765 47
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 60 DSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 60 D~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
|+.....+++.+++++++.|.+|+++.|...
T Consensus 130 d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 130 DNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 9999999999999999878999999999864
No 466
>PF13175 AAA_15: AAA ATPase domain
Probab=97.24 E-value=0.00069 Score=70.83 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=56.3
Q ss_pred cCCCCChHHHHHHHHHHHHh------hC-CC---EeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 25 MKRGLSGGEKKRANIACELL------TN-PA---LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~------~~-p~---~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+....|.|+++.+.++..+. .+ +. ++++|||-..|.|..+..+++.|+++++..+.-||+|||.|.
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 56679999999988877652 12 22 999999999999999999999999998657889999999983
No 467
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.19 E-value=0.001 Score=64.40 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCc----CHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 28 GLSGGEKKRANIACELL----TNPALMLLDEPTSGL----DSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgL----D~~~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
.+|+++.++-.+.+.+- .+|+++++||||+++ |+.....+.+.+++++ +.|.|+++++|+
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~-~~g~tvi~t~~~ 162 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRIS-SLNKVIILTANP 162 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHH-hCCCEEEEEecc
Confidence 46777655544433332 369999999999999 7788888999999987 457887776654
No 468
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.14 E-value=0.002 Score=62.39 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHhh--CCCEeEEeCCCCC---cCHHHHHHHHHHHHHHHHhcCcEEEEEecCcch------HHHhcc
Q psy16346 29 LSGGEKKRANIACELLT--NPALMLLDEPTSG---LDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS------QIFHMF 97 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~--~p~~lllDEPtsg---LD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~------~i~~~~ 97 (494)
.|.++++.+......+. +|+++++||||+. .|......+++.++.++ +.|.|+++++|++.. .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~-~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLV-DLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 46788999999999987 9999999999964 55555566666677766 468999999998652 145566
Q ss_pred CeEEEEe
Q psy16346 98 DKLLLLC 104 (494)
Q Consensus 98 d~v~ll~ 104 (494)
|.++.|.
T Consensus 180 DgvI~L~ 186 (234)
T PRK06067 180 DVYLKLR 186 (234)
T ss_pred EEEEEEE
Confidence 7777665
No 469
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.13 E-value=0.0013 Score=60.73 Aligned_cols=63 Identities=24% Similarity=0.435 Sum_probs=51.4
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
....-|-||-=---+.+. .++..+++||||-++|.+.-+..++..|++++ +.|.-+|+.||.|
T Consensus 126 sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la-~sGaQ~IiATHSP 188 (233)
T COG3910 126 SLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLA-DSGAQIIIATHSP 188 (233)
T ss_pred chhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHH-hcCCeEEEEecCh
Confidence 344568888644333333 45678999999999999999999999999999 6789999999998
No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.04 E-value=0.0021 Score=57.41 Aligned_cols=64 Identities=27% Similarity=0.278 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCC----------CcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTS----------GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ 92 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPts----------gLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~ 92 (494)
.-+.++.++...+.+...+|+++++||+++ +.|......+.+.... +++.+.|+++++|.+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCcc
Confidence 345666677788888889999999999995 4454555665555555 446799999999998644
No 471
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.95 E-value=0.0015 Score=74.94 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=54.7
Q ss_pred HHHHHhhCCCEeEEeCCCCCc-CHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHh--ccCeEEEEeCCeEeE
Q psy16346 39 IACELLTNPALMLLDEPTSGL-DSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH--MFDKLLLLCNGQTAY 110 (494)
Q Consensus 39 ia~~l~~~p~~lllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~--~~d~v~ll~~G~~~~ 110 (494)
|.+++..+|+++++|||+.+| |+..+..+.+.++.++ +.|.++++++|+|. ++.+ .++.++-..+.++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~R-K~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLR-KANCLVLMATQSLS-DAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHH-HHhhCchHHHHHHcCCcceec
Confidence 567788999999999999999 7999999999999987 56889999999986 4544 334444444455554
No 472
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.64 E-value=0.0073 Score=60.01 Aligned_cols=62 Identities=34% Similarity=0.529 Sum_probs=55.9
Q ss_pred CCCChHHHHHHHHHHHHhh--CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 27 RGLSGGEKKRANIACELLT--NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~--~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+.||-|+.|-+.++.+|.+ .|.++++|||-++|.|..--.+...+++.+| .+ -|+++||.|.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak-~s-Qv~VsTHS~r 332 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAK-RS-QVIVSTHSPR 332 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhc-cc-eEEEEeCCHH
Confidence 5899999999999999985 6889999999999999999999999999874 34 7899999864
No 473
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.0092 Score=64.05 Aligned_cols=74 Identities=26% Similarity=0.433 Sum_probs=62.5
Q ss_pred CCCChHHHHHHHHHHHHhh----CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE
Q psy16346 27 RGLSGGEKKRANIACELLT----NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~----~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l 102 (494)
+-.||||--|+.+|...+. +.+.+++||--+|+.-..+..|-+.|++++ + +.=|+|+||.| ++..++|.=+.
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls-~-~~QVl~VTHlP--QVAa~ad~H~~ 505 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLS-E-HHQVLCVTHLP--QVAAMADTHFL 505 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHh-c-CceEEEEecHH--HHHhhhcceEE
Confidence 5679999999999877652 245899999999999999999999999997 3 56899999998 68888886555
Q ss_pred Ee
Q psy16346 103 LC 104 (494)
Q Consensus 103 l~ 104 (494)
..
T Consensus 506 V~ 507 (557)
T COG0497 506 VE 507 (557)
T ss_pred EE
Confidence 54
No 474
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=96.42 E-value=1.1 Score=44.14 Aligned_cols=243 Identities=20% Similarity=0.249 Sum_probs=133.8
Q ss_pred HHHHHHHHhHHhh-cchhHHHHHHHHHHHHHHHHHHHhc-cCCC----ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy16346 207 QFKVLSQRNFQEA-RPRMLSTLNWVQTIGLGIMAGLLWF-QLPR----TEEALHDIQGWMFFSTTFWMLFAHFGALASFP 280 (494)
Q Consensus 207 Q~~~L~~R~~~~~-R~~~~~~~r~~~~i~~~ll~G~~f~-~~~~----~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~ 280 (494)
++..+.+++++.. |.|.....-....+..++.....+- .... ....-++. +..........+.+.+..+..
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-- 79 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLL-FLSSVSLVFSFFLPLLAILLG-- 79 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhh-hhhhHHHHHHHHHHHHHHHHc--
Confidence 4677888999988 8776655443333444444444441 1111 00011111 111111111122222222222
Q ss_pred hhhhHHHHhhcCCC--------CChHHHHHHHHHHHHhHHHHhHhhhh---hhhhcccCCC----ChhHHHHHHHHHHHH
Q psy16346 281 PEREVINKERLSGA--------YRLSAYYLAKMVGELPLTITLPAVYH---LISYPMLGLQ----SPTVFITLLGFLLLN 345 (494)
Q Consensus 281 ~er~v~~rE~~~~~--------Y~~~ay~la~~l~~lp~~~~~~~if~---~i~Y~m~gl~----~~~~f~~f~~~~~l~ 345 (494)
-.++.+|+++|. .+.+--+++|.++-+-...+..++.. ...+...|.. +...+..+....++.
T Consensus 80 --~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 157 (278)
T COG1277 80 --ADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLY 157 (278)
T ss_pred --cchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH
Confidence 236778888874 45566778999888776665555554 1233333432 223455666666666
Q ss_pred HHHHHHHHHHhhcccccccccccccceeeccHHHHHHHHHHHHHHHHHhhhcccC-------CchhhhHhhHhhcHHHHH
Q psy16346 346 SIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT-------NIPYWLKWMQYLSMVHYA 418 (494)
Q Consensus 346 ~~~~~s~g~~i~~~~~~~~~~~~~~~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~-------~ip~~~~Wl~yiSp~~Y~ 418 (494)
...-.+++.++ ++..++...+..++..+.....+..+.... ...+....+.+.+|.++.
T Consensus 158 ~~~~~~~~~~~--------------s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 223 (278)
T COG1277 158 GLVLLSISLLI--------------SSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLL 223 (278)
T ss_pred HHHHHHHHHHH--------------hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHH
Confidence 66677778777 888888877777776665555444333221 222256778888999888
Q ss_pred HHHHHHHhcCCCCccccCCCCCCccCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy16346 419 YQNMQIVEFSEGLPIQCATQSKFDACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGYIVLR 488 (494)
Q Consensus 419 ~~~l~~nef~~~~~~~C~~~~~~~~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~ 488 (494)
.+.......... .. +. . ....+ .....|.+..+++++.+.+..++++..+
T Consensus 224 ~~~~~~~~~~~~--~~---~~-----~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 273 (278)
T COG1277 224 AELAFTILLQSG--FS---DS-----I---LTLNE-------SLLLAWFNILILIIYILIFLSIAYLIFK 273 (278)
T ss_pred HHHhhhhccccc--cc---cc-----c---ccccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887655443210 00 00 0 00000 0135799999999999999999987544
No 475
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=96.35 E-value=0.0059 Score=46.55 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=38.9
Q ss_pred CHhHHHhhcCCC---cchHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy16346 451 PVDAILESQGSS---LPLWCNTLILIGFLVFFRTLGYIVLRYFRRPG 494 (494)
Q Consensus 451 ~g~~~L~~~~~~---~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 494 (494)
-|+++|+..|+. ..+|..+++|+|+.+.|.++..++|.+.+.++
T Consensus 12 lG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~ 58 (65)
T PF08370_consen 12 LGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG 58 (65)
T ss_pred HHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 499999999974 35899999999999999999999999987653
No 476
>KOG0964|consensus
Probab=96.07 E-value=0.0041 Score=69.15 Aligned_cols=73 Identities=22% Similarity=0.380 Sum_probs=61.8
Q ss_pred CCCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE
Q psy16346 27 RGLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL 102 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l 102 (494)
.+||||||--|++|.-++ ..++++++||.-+.||+..+..+..+|+++++ ..-.|+||-.| ++...+|+.+=
T Consensus 1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~--~aQFI~TTFRp--Ell~vAdKfyg 1171 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSD--SAQFITTTFRP--ELLSVADKFYG 1171 (1200)
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhh--ccceEeecccH--HHHHHHHhhhc
Confidence 479999999999988775 34579999999999999999999999999984 36788999886 67888887654
Q ss_pred E
Q psy16346 103 L 103 (494)
Q Consensus 103 l 103 (494)
.
T Consensus 1172 V 1172 (1200)
T KOG0964|consen 1172 V 1172 (1200)
T ss_pred e
Confidence 3
No 477
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.01 E-value=0.027 Score=59.59 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=66.7
Q ss_pred CCChHHHHHHH-----HHHHHhh-CCC-EeEEe-----------------CC--CCCcCHHHHHHHHHHHHHHHH-hcCc
Q psy16346 28 GLSGGEKKRAN-----IACELLT-NPA-LMLLD-----------------EP--TSGLDSHAAYSLMSSLKRYAE-KEGK 80 (494)
Q Consensus 28 ~lSgGerkRv~-----ia~~l~~-~p~-~lllD-----------------EP--tsgLD~~~~~~i~~~l~~l~~-~~g~ 80 (494)
.=|-++|-|.. +|.=+.. +-+ ++++| || |+|+|+.....+.+.++++.+ +.|.
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs 302 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGS 302 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 44778887754 4444432 334 55788 75 569999999999999999873 3575
Q ss_pred -----EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhh
Q psy16346 81 -----TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116 (494)
Q Consensus 81 -----tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~ 116 (494)
||++.+|+..+ ..+|++..+.+|+++.+++..+
T Consensus 303 IT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 303 ITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred eeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 99999999763 7899999999999999998653
No 478
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.97 E-value=0.013 Score=65.44 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=42.5
Q ss_pred cCCCCChHHHHHHHHHHHHhh------CCCEeEEeCCCCCcCHHHHHHHHH-HHHHHHHhcCcEEEEEecC
Q psy16346 25 MKRGLSGGEKKRANIACELLT------NPALMLLDEPTSGLDSHAAYSLMS-SLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~------~p~~lllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~~H~ 88 (494)
.+..||||||+-+++|-.++. +.++ ++|||++.||+..+..+++ .+.++ ..=||+.+|+
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d 613 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTD 613 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEech
Confidence 356799999999766654432 3555 5699999999999999985 66543 2455666676
No 479
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.76 E-value=0.014 Score=69.57 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=62.4
Q ss_pred CCCCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEE
Q psy16346 26 KRGLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLL 101 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ 101 (494)
...||||||=-++||.-++ ...++.+|||-=++||......+.++|++.+ .+.=.|++||++ ..+..+|+++
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~--~~m~~ad~l~ 1139 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRK--GTMEAADRLV 1139 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcCh--HHHHHHHHHe
Confidence 3469999999999988775 4567999999999999999999999999987 366789999996 4577888765
Q ss_pred EE
Q psy16346 102 LL 103 (494)
Q Consensus 102 ll 103 (494)
-.
T Consensus 1140 GV 1141 (1163)
T COG1196 1140 GV 1141 (1163)
T ss_pred ee
Confidence 43
No 480
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=95.69 E-value=0.023 Score=65.10 Aligned_cols=47 Identities=28% Similarity=0.282 Sum_probs=41.7
Q ss_pred HhhCCCEeEEeCCCCCcC-HHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 43 LLTNPALMLLDEPTSGLD-SHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 43 l~~~p~~lllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+-.+|+++++|||+.+|| +..+..+.+.++..+ +.|.++++++|+|.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLR-KKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEECCHH
Confidence 345899999999999999 788999999999987 56889999999986
No 481
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.54 E-value=0.013 Score=59.28 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=57.1
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhh
Q psy16346 37 ANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116 (494)
Q Consensus 37 v~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~ 116 (494)
-.+..+|-.+|+++++|||.+ .+..+.++.+. ..+.+++.|+|..+ ..+..||+..|..|++...|.+.+
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~ 278 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFA 278 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHH
Confidence 345667889999999999996 34556677664 43446799999976 567799999999999999998887
Q ss_pred HHH
Q psy16346 117 VVD 119 (494)
Q Consensus 117 ~~~ 119 (494)
...
T Consensus 279 ~~~ 281 (308)
T TIGR02788 279 YIV 281 (308)
T ss_pred HHH
Confidence 763
No 482
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=95.50 E-value=0.041 Score=63.27 Aligned_cols=78 Identities=26% Similarity=0.227 Sum_probs=54.2
Q ss_pred cccccC--ccCCCCChHHHHHHHHHHHHh--hCCCEeEEeCC---CCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 18 HTIIGD--YMKRGLSGGEKKRANIACELL--TNPALMLLDEP---TSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 18 ~~~vg~--~~~~~lSgGerkRv~ia~~l~--~~p~~lllDEP---tsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
.|++|. ...+|.|.=+.-...++..|- ++++++++||| |+.+|..+ .....++.+.+..|.+++++||.+
T Consensus 654 ~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~- 730 (854)
T PRK05399 654 FTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH- 730 (854)
T ss_pred eeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH-
Confidence 455653 345677876666666666664 59999999999 77777443 344566666644468999999993
Q ss_pred hHHHhccCe
Q psy16346 91 SQIFHMFDK 99 (494)
Q Consensus 91 ~~i~~~~d~ 99 (494)
++.+++++
T Consensus 731 -el~~l~~~ 738 (854)
T PRK05399 731 -ELTELEEK 738 (854)
T ss_pred -HHHHHhhh
Confidence 67777765
No 483
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=95.43 E-value=0.5 Score=49.30 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCC---Ch--hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy16346 295 YRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQ---SP--TVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFF 369 (494)
Q Consensus 295 Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~---~~--~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~~~~~ 369 (494)
.++..|.+-|.++.....++.+++|+.+. +.-+.. .. +.|+.+|+..++.. .++|...
T Consensus 239 l~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m---~a~g~~~------------- 301 (382)
T PF12051_consen 239 LKPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYM---SAVGLAN------------- 301 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHH---HHHHHHH-------------
Confidence 37888999999999999999999998887 544431 22 45888988877653 3444433
Q ss_pred cceeeccHHHHHHHHHHHHHHHHH-------hhhcccC-CchhhhHhhHhhcHHHHHHHHHHHHhcCCCCccccCCCCCC
Q psy16346 370 VGACCMDMQVSITISALYTLATQL-------FGGYLAT-NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKF 441 (494)
Q Consensus 370 ~~a~~~~~~~A~~~~~~~~~~~~l-------f~Gf~i~-~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~~ 441 (494)
..+.+.+.+..+.++++ -++|+-- -.|.+.||.|=+ |++.+++++-.--|+ .
T Consensus 302 -------e~~~~~i~~~~~~~~ll~wvi~nv~~~~~P~el~p~fyr~gya~-P~~n~~~~~r~I~fd-~----------- 361 (382)
T PF12051_consen 302 -------ENVISIIGPPFMPFWLLFWVILNVSSTFYPLELSPGFYRYGYAM-PMHNIYEGLRVIFFD-T----------- 361 (382)
T ss_pred -------HHHHHHHccchHHHHHHHHHHHhcccccCChhhCccHHHHhhhh-hHHHHHHHHHHheeC-C-----------
Confidence 11122223222222222 2444322 779999999999 999999999887443 1
Q ss_pred ccCCCCcccCHhHHHhhcCCCcchHHHHHHHHHHHHHH
Q psy16346 442 DACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFF 479 (494)
Q Consensus 442 ~~C~~~~~~~g~~~L~~~~~~~~~w~~~~il~~~~~~~ 479 (494)
|. .+..+|++||+++.++.
T Consensus 362 --~~-----------------~~lg~n~gil~aw~~v~ 380 (382)
T PF12051_consen 362 --CK-----------------GQLGRNYGILFAWIVVN 380 (382)
T ss_pred --Cc-----------------ccccchHHHHHHHHHHH
Confidence 11 23568999999988764
No 484
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.31 E-value=0.0024 Score=68.80 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCCCChHHHHHHHHH--HHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH-------H-Hh
Q psy16346 26 KRGLSGGEKKRANIA--CELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ-------I-FH 95 (494)
Q Consensus 26 ~~~lSgGerkRv~ia--~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~-------i-~~ 95 (494)
.+.+|+|++|||.|+ .++..+|+.. ...+..+.+.++.++ +.|.|+++++|++... + ..
T Consensus 113 ~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~~e~ 181 (484)
T TIGR02655 113 NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGVEEF 181 (484)
T ss_pred HHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCceeE
Confidence 346788888888888 5555555432 467788889998886 6799999999986421 2 45
Q ss_pred ccCeEEEEe
Q psy16346 96 MFDKLLLLC 104 (494)
Q Consensus 96 ~~d~v~ll~ 104 (494)
++|.|+.|+
T Consensus 182 laDgVI~L~ 190 (484)
T TIGR02655 182 VSDNVVILR 190 (484)
T ss_pred eeeeEEEEE
Confidence 789999886
No 485
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=95.15 E-value=1.1 Score=42.88 Aligned_cols=134 Identities=18% Similarity=0.275 Sum_probs=71.9
Q ss_pred HHHHHHHhHHhh-cchhHHHHHHHHHHHHHHHHHHHh-ccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy16346 208 FKVLSQRNFQEA-RPRMLSTLNWVQTIGLGIMAGLLW-FQLPRTEEALHD-IQGWMFFSTTFWMLFAHFGALASFPPERE 284 (494)
Q Consensus 208 ~~~L~~R~~~~~-R~~~~~~~r~~~~i~~~ll~G~~f-~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~~~~~f~~er~ 284 (494)
++.+.||.++.. |++... ...+++++++-.+| +-++.+++...+ ..|.+..+..+.... + . ..
T Consensus 1 ~~~l~~kdl~le~r~~~~~----~~~~lf~l~~i~if~~al~~~~~~l~~~~~gllWi~~lfa~~l---~----~---~r 66 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGL----LSMLLFFLLVIVIFSFALGPDPDLLARVAPGLLWIALLFASLL---G----L---NR 66 (215)
T ss_pred CHHHHHHHHHHHHccccch----HHHHHHHHHHHHHHHhhcCCchhHHHHHhHHHHHHHHHHHHHH---H----h---hH
Confidence 367889999998 876543 22233333333333 345544333333 334444433332211 1 1 22
Q ss_pred HHHHhhcCCC--------CChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q psy16346 285 VINKERLSGA--------YRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFV 356 (494)
Q Consensus 285 v~~rE~~~~~--------Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i 356 (494)
.|.+|+++|. .++.+.+++|.++..-...+..++...+...+-|.+. .....+.+.+.+.+..-.+.|-+.
T Consensus 67 ~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~-~~~~~~~~~l~lgt~gl~~igtl~ 145 (215)
T PF03379_consen 67 SFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI-SSWPLLLLSLLLGTLGLAAIGTLL 145 (215)
T ss_pred hHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4777887775 2457899999999887776665555555555556542 233444444444444444555554
No 486
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=94.97 E-value=0.14 Score=53.61 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=67.9
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCc-----CHHHHHHH----------HHHHHHHHHhcCcEEEEEecCcc
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGL-----DSHAAYSL----------MSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgL-----D~~~~~~i----------~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
...-||-.-|=.+|..||=.+.++||+||-||.- |...+..+ ++.++++.++.|.+.|+++-- +
T Consensus 320 T~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-s 398 (448)
T PF09818_consen 320 TENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-S 398 (448)
T ss_pred ccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-c
Confidence 3467999999999999999999999999999953 55555554 677888877889988888855 6
Q ss_pred hHHHhccCeEEEEeCCeE
Q psy16346 91 SQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 91 ~~i~~~~d~v~ll~~G~~ 108 (494)
.+.++.+|+|++|++=+.
T Consensus 399 gdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 399 GDYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhhHhhCCEEEEecCccc
Confidence 688999999999987554
No 487
>PF13166 AAA_13: AAA domain
Probab=94.59 E-value=0.11 Score=58.68 Aligned_cols=65 Identities=28% Similarity=0.426 Sum_probs=53.4
Q ss_pred cCCCCChHHHHHHHHHHHH--hh-------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH-hcCcEEEEEecCc
Q psy16346 25 MKRGLSGGEKKRANIACEL--LT-------NPALMLLDEPTSGLDSHAAYSLMSSLKRYAE-KEGKTVVVTVHQP 89 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l--~~-------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~-~~g~tii~~~H~p 89 (494)
....||-|||+=+++|-=| +. +.+++++|.|-|.||......+.+.|+++.+ ...+=||+-||+.
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~ 571 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNL 571 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcH
Confidence 3567999999999997544 23 5689999999999999999999999999841 1256789999995
No 488
>KOG0962|consensus
Probab=94.57 E-value=0.055 Score=62.88 Aligned_cols=60 Identities=33% Similarity=0.447 Sum_probs=48.3
Q ss_pred CChHHH------HHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH----hcCcEEEEEecC
Q psy16346 29 LSGGEK------KRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE----KEGKTVVVTVHQ 88 (494)
Q Consensus 29 lSgGer------kRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~----~~g~tii~~~H~ 88 (494)
.|-||| =|+++|..+..+..+|=|||||++||-.....+...+.++-+ ..+.=.|++||+
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence 499999 578889999999999999999999999988877766655442 234456888888
No 489
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=94.23 E-value=2.3 Score=40.53 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=70.3
Q ss_pred HHHhHHhh-cchhHHHHHHHHHHHHHHHHHHHh-ccCCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q psy16346 212 SQRNFQEA-RPRMLSTLNWVQTIGLGIMAGLLW-FQLPRTEEALHDIQ-GWMFFSTTFWMLFAHFGALASFPPEREVINK 288 (494)
Q Consensus 212 ~~R~~~~~-R~~~~~~~r~~~~i~~~ll~G~~f-~~~~~~~~~~~~~~-g~lf~~~~~~~~~~~~~~~~~f~~er~v~~r 288 (494)
.+|.++.. |++... ...+++.+++-++| +..+.+....++.. |++..+..+. .+... ...|.+
T Consensus 2 ~~kDl~l~~r~~~~~----~~~llF~l~vi~lf~la~gp~~~~l~~~apgilWva~lfa-------~ll~l---~rlF~~ 67 (211)
T TIGR01190 2 IRRDLRLAFRAGGGI----LNPLWFFLIVVTLFPFGVGPELKLLSRIAPGIVWVGALLS-------SLLSL---DRLFRD 67 (211)
T ss_pred cHHHHHHHHcccchH----HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH-------HHHHh---hHHHHH
Confidence 47777776 765433 34445555554544 45665554444444 3444333332 21112 346788
Q ss_pred hhcCCC--------CChHHHHHHHHHHHHhHHHHhHhhhhhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q psy16346 289 ERLSGA--------YRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFV 356 (494)
Q Consensus 289 E~~~~~--------Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~m~gl~~~~~f~~f~~~~~l~~~~~~s~g~~i 356 (494)
|+++|. .+....+++|.++..-...+.-.+..-..-.+-|++.. ....+.+.+.+.+..-..+|-+.
T Consensus 68 d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~-~~~~l~l~LllGt~~Ls~igtl~ 142 (211)
T TIGR01190 68 DFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVP-AWGALALTLLLGTPALSFLGAIG 142 (211)
T ss_pred HHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888883 46788899999977655544444443333334455432 22445555555555555566555
No 490
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.09 E-value=0.098 Score=59.97 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=43.0
Q ss_pred HHhhCCCEeEEeCCCCCcC-HHHHHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy16346 42 ELLTNPALMLLDEPTSGLD-SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91 (494)
Q Consensus 42 ~l~~~p~~lllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~ 91 (494)
.+..+|.++++|||..+|| +..+..+.+.+++.+ +.|..++++||+|..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 3457899999999999999 888999999999986 568899999999853
No 491
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.83 E-value=0.084 Score=49.76 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 38 NIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 38 ~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
.+.++|..+|+++++|||. |.++...++ +.+ ..|..++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a-~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAA-ETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHH-HcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4678888999999999996 555433333 344 46899999999975 356789987764
No 492
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.67 E-value=0.065 Score=56.49 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHHHHHHHh-------hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccC
Q psy16346 26 KRGLSGGEKKRANIACELL-------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFD 98 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~-------~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d 98 (494)
..+-|.|+|+|+..+...+ .++-++++|+||++.|+. .++-..+.+.. ..|.+..+.+|.+ .+++.+-
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p-~~G~~~~~~s~l~--~L~ERag 293 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELP-IGGKTLLMESYMK--KLLERSG 293 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCC-CCCeeeeeeccch--hHHHHhc
Confidence 4567999999999888877 688899999999999996 55555666665 3588888888853 4444444
Q ss_pred eEEEEeCCeEeEeCCh
Q psy16346 99 KLLLLCNGQTAYFGDT 114 (494)
Q Consensus 99 ~v~ll~~G~~~~~G~~ 114 (494)
...+|.+...++.
T Consensus 294 ---~~~~GSiT~~~tv 306 (432)
T PRK06793 294 ---KTQKGSITGIYTV 306 (432)
T ss_pred ---cCCCcceEEEEEE
Confidence 3578888766543
No 493
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.66 E-value=0.1 Score=53.29 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.9
Q ss_pred eEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 50 MLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 50 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+++|||+.+||+..+..+.+.+++.. .+.++|+++|+|.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~--~~~~~Ilvth~~~ 154 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP--PQVVFLLVSHAAD 154 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc--CCCEEEEEeCChH
Confidence 55789999999999999999999975 4689999999986
No 494
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=93.32 E-value=0.047 Score=50.90 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcch-HHHhccCeEEEEeCC
Q psy16346 31 GGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS-QIFHMFDKLLLLCNG 106 (494)
Q Consensus 31 gGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~-~i~~~~d~v~ll~~G 106 (494)
-|+-.|..+|..+..+|+.+..+| +.+||.....+.+.+++.. ..|.+|++.+|...+ .....||+++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478999999999999999887776 8999999999999998875 456799999998742 356789999887543
No 495
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.17 E-value=0.22 Score=45.26 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=54.6
Q ss_pred HHHHHHHHhh--CCCEeEEeCCCCC--cCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 36 RANIACELLT--NPALMLLDEPTSG--LDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 36 Rv~ia~~l~~--~p~~lllDEPtsg--LD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
-...|++.+. +.++++|||-... ++.....++.+.|++. ..+..+|+|.+++++++.+.+|-|.-|..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r--p~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK--PEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC--CCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 4455666663 5799999999874 5566778899999874 45789999999999999999999988764
No 496
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=92.84 E-value=0.3 Score=45.11 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=56.0
Q ss_pred HHHHHHHHhh--CCCEeEEeCCCCCc--CHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 36 RANIACELLT--NPALMLLDEPTSGL--DSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 36 Rv~ia~~l~~--~p~~lllDEPtsgL--D~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
-+..|++.+. +.++++|||-...+ +--...++++.|++- ..+.-+|+|-+++++++.+.+|-|.-|..++
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~r--p~~~evILTGR~~p~~Lie~AD~VTEm~~~~ 176 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKR--PSHVDVILTGPEMPESLLAIADQITELRRSH 176 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhC--CCCCEEEEECCCCCHHHHHhCCeeeeeeccc
Confidence 3456666664 57999999998854 445677888988873 4678999999999999999999999987653
No 497
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=92.82 E-value=0.2 Score=51.40 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=55.9
Q ss_pred CCChHHHHHHHHHHHHh---------hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccC
Q psy16346 28 GLSGGEKKRANIACELL---------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFD 98 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~---------~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d 98 (494)
-.|-||+|-+.++.-|+ .+++|++|||-+|-||..-+..+++. .+ ....+.|-+|+.+ .+-+..+
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~---~~~Q~fvT~t~~~--~~~~~~~ 348 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE---LGVQVFVTTTDLE--DIDDNLD 348 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc---cCCeEEEEccCHH--Hhhhhhh
Confidence 47999999998877663 47799999999999999999999998 33 3355666666552 3443444
Q ss_pred ---eEEEEeCCeE
Q psy16346 99 ---KLLLLCNGQT 108 (494)
Q Consensus 99 ---~v~ll~~G~~ 108 (494)
++.-..+|++
T Consensus 349 ~~~~~f~V~~g~i 361 (363)
T COG1195 349 ENAQMFHVEDGKI 361 (363)
T ss_pred ccceEEEEeccee
Confidence 6667777776
No 498
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=92.80 E-value=0.54 Score=45.66 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=47.2
Q ss_pred CCCCCh--HHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 26 KRGLSG--GEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM-SSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 26 ~~~lSg--GerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
..++|. .|-+|++=...-+.+-.++++||+..|=++.....+. ..++.+.++.+..++++||.. ++.+.
T Consensus 100 ~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~ 171 (235)
T PF00488_consen 100 ESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAEL 171 (235)
T ss_dssp TTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGH
T ss_pred ccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHH
Confidence 345664 5666666555557778899999999999999988776 455566633578899999996 34444
No 499
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=92.77 E-value=7.9 Score=35.64 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=27.6
Q ss_pred HHHHhhcCCC--------CChHHHHHHHHHHHHhHHHHhHhhhhhh
Q psy16346 285 VINKERLSGA--------YRLSAYYLAKMVGELPLTITLPAVYHLI 322 (494)
Q Consensus 285 v~~rE~~~~~--------Y~~~ay~la~~l~~lp~~~~~~~if~~i 322 (494)
.+.+|+++|. .+...++.||.++-.-..++..++...+
T Consensus 69 ~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~ 114 (232)
T PF12730_consen 69 LFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLI 114 (232)
T ss_pred HHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777775 4788999999999988777666654433
No 500
>KOG0933|consensus
Probab=92.76 E-value=0.081 Score=59.51 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=53.7
Q ss_pred CCCCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEE
Q psy16346 26 KRGLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLL 101 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ 101 (494)
..+||||||-.|+++.-|+ ..++++||||.-+.||-.....|-++|+.- -.|.-.|+++-- +..|.-+|++.
T Consensus 1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkth--F~~sQFIVVSLK--eGMF~NANvLF 1155 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FTHSQFIVVSLK--EGMFNNANVLF 1155 (1174)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhh--CCCCeEEEEEch--hhccccchhhh
Confidence 4689999999988765543 467899999999999999999999999974 445455555433 24566666543
Done!