Query psy16346
Match_columns 494
No_of_seqs 241 out of 2500
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 19:01:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.9 9.3E-25 3.2E-29 215.2 13.9 112 2-119 122-233 (275)
2 3tui_C Methionine import ATP-b 99.9 1.2E-24 4E-29 221.4 14.5 111 2-118 142-252 (366)
3 3fvq_A Fe(3+) IONS import ATP- 99.9 3.1E-24 1E-28 218.1 14.6 112 2-119 117-228 (359)
4 4g1u_C Hemin import ATP-bindin 99.9 3.2E-24 1.1E-28 210.5 13.7 111 2-118 120-236 (266)
5 2onk_A Molybdate/tungstate ABC 99.9 3.3E-24 1.1E-28 207.4 13.4 112 2-119 105-216 (240)
6 2olj_A Amino acid ABC transpor 99.9 6.2E-24 2.1E-28 208.0 14.7 110 2-118 138-247 (263)
7 3rlf_A Maltose/maltodextrin im 99.9 5.5E-24 1.9E-28 217.7 14.5 112 2-119 112-223 (381)
8 1b0u_A Histidine permease; ABC 99.9 7.7E-24 2.6E-28 207.5 13.8 110 2-118 131-241 (262)
9 2yyz_A Sugar ABC transporter, 99.9 1E-23 3.5E-28 214.8 14.8 112 2-119 112-223 (359)
10 1g6h_A High-affinity branched- 99.9 9.6E-24 3.3E-28 206.3 14.1 107 3-116 133-239 (257)
11 1z47_A CYSA, putative ABC-tran 99.9 9.4E-24 3.2E-28 214.6 14.4 112 2-119 124-235 (355)
12 3tif_A Uncharacterized ABC tra 99.9 8.9E-24 3.1E-28 203.8 13.3 110 2-118 123-233 (235)
13 2it1_A 362AA long hypothetical 99.9 1.1E-23 3.8E-28 214.7 13.8 112 2-119 112-223 (362)
14 1oxx_K GLCV, glucose, ABC tran 99.9 1E-23 3.6E-28 214.6 13.4 112 2-119 119-230 (353)
15 3d31_A Sulfate/molybdate ABC t 99.9 1.4E-23 4.7E-28 213.1 13.9 111 2-118 106-216 (348)
16 1g29_1 MALK, maltose transport 99.9 1.8E-23 6E-28 214.3 14.5 112 2-119 118-229 (372)
17 1vpl_A ABC transporter, ATP-bi 99.9 2.1E-23 7.2E-28 203.5 14.2 111 2-119 125-235 (256)
18 1v43_A Sugar-binding transport 99.9 1.9E-23 6.6E-28 213.7 13.7 112 2-119 120-231 (372)
19 2pcj_A ABC transporter, lipopr 99.9 2.6E-23 8.7E-28 199.2 12.9 105 2-114 119-223 (224)
20 1ji0_A ABC transporter; ATP bi 99.9 2.4E-23 8.4E-28 201.4 12.5 109 3-118 118-227 (240)
21 2yz2_A Putative ABC transporte 99.9 3.1E-23 1.1E-27 203.6 13.5 111 2-119 115-227 (266)
22 2nq2_C Hypothetical ABC transp 99.9 4.2E-23 1.4E-27 201.2 13.9 110 2-118 107-216 (253)
23 2ihy_A ABC transporter, ATP-bi 99.9 3.7E-23 1.3E-27 204.3 12.2 109 3-118 141-251 (279)
24 2qi9_C Vitamin B12 import ATP- 99.9 9.2E-23 3.1E-27 198.2 13.0 110 2-118 105-221 (249)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 9E-23 3.1E-27 198.6 12.8 107 3-116 121-230 (250)
26 2zu0_C Probable ATP-dependent 99.9 1.2E-22 4E-27 199.7 13.3 116 3-126 142-260 (267)
27 2ixe_A Antigen peptide transpo 99.9 2.5E-22 8.7E-27 197.6 11.9 108 5-119 136-245 (271)
28 2ff7_A Alpha-hemolysin translo 99.9 4.8E-22 1.6E-26 193.1 13.2 111 3-118 114-231 (247)
29 3nh6_A ATP-binding cassette SU 99.9 1.1E-21 3.6E-26 195.9 14.5 112 3-119 159-277 (306)
30 2pjz_A Hypothetical protein ST 99.9 7.9E-22 2.7E-26 193.1 12.7 107 2-118 106-214 (263)
31 1mv5_A LMRA, multidrug resista 99.9 5.2E-22 1.8E-26 192.4 11.2 113 3-119 108-226 (243)
32 2ghi_A Transport protein; mult 99.9 1.4E-21 4.9E-26 191.2 13.4 112 3-119 124-242 (260)
33 3gd7_A Fusion complex of cysti 99.8 3.1E-21 1.1E-25 198.6 9.9 114 2-119 123-242 (390)
34 3j16_B RLI1P; ribosome recycli 99.8 8.5E-21 2.9E-25 205.9 11.7 112 3-120 447-560 (608)
35 3b60_A Lipid A export ATP-bind 99.8 2.4E-20 8.3E-25 202.6 14.6 113 2-119 448-567 (582)
36 2yl4_A ATP-binding cassette SU 99.8 1.9E-20 6.6E-25 203.9 13.6 113 2-119 451-570 (595)
37 2cbz_A Multidrug resistance-as 99.8 1.9E-20 6.6E-25 180.6 12.0 92 24-119 123-217 (237)
38 3b5x_A Lipid A export ATP-bind 99.8 2.4E-20 8.2E-25 202.6 13.7 113 2-119 448-567 (582)
39 2pze_A Cystic fibrosis transme 99.8 1.4E-20 4.6E-25 180.8 10.4 110 4-118 100-217 (229)
40 3qf4_A ABC transporter, ATP-bi 99.8 7.1E-20 2.4E-24 199.0 15.1 111 4-119 449-566 (587)
41 4a82_A Cystic fibrosis transme 99.8 7.2E-20 2.5E-24 198.7 14.5 112 3-119 446-564 (578)
42 3bk7_A ABC transporter ATP-bin 99.8 5.8E-20 2E-24 199.6 13.0 112 3-120 451-564 (607)
43 1yqt_A RNAse L inhibitor; ATP- 99.8 4.5E-20 1.5E-24 198.2 11.5 112 3-120 381-494 (538)
44 3qf4_B Uncharacterized ABC tra 99.8 6.1E-20 2.1E-24 200.0 12.1 112 3-119 460-578 (598)
45 1sgw_A Putative ABC transporte 99.8 2E-20 6.9E-25 177.5 5.7 98 2-108 113-210 (214)
46 3ozx_A RNAse L inhibitor; ATP 99.8 1.2E-19 4.2E-24 194.5 12.2 110 3-118 365-476 (538)
47 2bbs_A Cystic fibrosis transme 99.8 1.2E-19 4.2E-24 179.9 10.3 110 4-118 129-246 (290)
48 3ux8_A Excinuclease ABC, A sub 99.8 6.4E-19 2.2E-23 194.5 14.3 108 3-118 522-639 (670)
49 3bk7_A ABC transporter ATP-bin 99.8 7.8E-19 2.7E-23 190.7 12.3 99 2-107 207-305 (607)
50 3ux8_A Excinuclease ABC, A sub 99.8 1E-18 3.4E-23 193.0 13.0 104 7-118 185-297 (670)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 7.5E-19 2.6E-23 188.7 11.3 99 2-107 137-235 (538)
52 3pih_A Uvrabc system protein A 99.8 1.8E-18 6.1E-23 194.4 14.3 110 3-119 784-902 (916)
53 4f4c_A Multidrug resistance pr 99.8 1E-18 3.4E-23 205.5 11.4 112 3-119 1186-1304(1321)
54 3j16_B RLI1P; ribosome recycli 99.8 1.6E-18 5.5E-23 188.0 11.5 103 2-111 200-302 (608)
55 3ozx_A RNAse L inhibitor; ATP 99.7 1.8E-18 6E-23 185.5 10.6 101 2-110 117-217 (538)
56 2iw3_A Elongation factor 3A; a 99.7 3.6E-18 1.2E-22 192.3 13.5 108 2-119 526-635 (986)
57 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.5E-18 1.2E-22 152.6 10.6 83 23-108 52-142 (148)
58 3g5u_A MCG1178, multidrug resi 99.7 6.8E-18 2.3E-22 198.0 13.8 111 4-119 1141-1258(1284)
59 4f4c_A Multidrug resistance pr 99.7 6.6E-18 2.3E-22 198.5 13.0 112 3-119 523-641 (1321)
60 2r6f_A Excinuclease ABC subuni 99.7 1.1E-17 3.7E-22 187.1 14.0 108 3-118 824-941 (972)
61 2vf7_A UVRA2, excinuclease ABC 99.7 7.1E-18 2.4E-22 188.1 12.5 108 3-118 709-826 (842)
62 2ygr_A Uvrabc system protein A 99.7 1.6E-17 5.5E-22 186.3 14.0 108 4-119 843-960 (993)
63 3pih_A Uvrabc system protein A 99.7 1E-17 3.6E-22 188.2 12.5 108 4-119 444-560 (916)
64 3g5u_A MCG1178, multidrug resi 99.7 1.4E-17 4.8E-22 195.3 12.9 99 16-119 515-613 (1284)
65 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 1.3E-17 4.6E-22 170.8 10.1 84 24-110 275-364 (365)
66 2r6f_A Excinuclease ABC subuni 99.7 3.7E-17 1.2E-21 182.9 12.1 104 7-118 487-599 (972)
67 2ygr_A Uvrabc system protein A 99.7 6E-17 2.1E-21 181.7 13.5 105 7-119 504-617 (993)
68 2iw3_A Elongation factor 3A; a 99.7 2E-17 6.8E-22 186.3 8.5 101 3-113 879-981 (986)
69 2vf7_A UVRA2, excinuclease ABC 99.7 1.1E-16 3.7E-21 178.6 12.2 107 3-118 359-474 (842)
70 4aby_A DNA repair protein RECN 99.6 1.2E-15 4E-20 158.6 12.8 80 29-112 296-381 (415)
71 3qkt_A DNA double-strand break 99.5 1.6E-14 5.6E-19 146.4 10.2 81 24-107 244-332 (339)
72 3kta_B Chromosome segregation 99.5 2.4E-14 8.2E-19 131.0 10.2 79 26-108 62-146 (173)
73 4ad8_A DNA repair protein RECN 99.5 1.3E-14 4.5E-19 155.3 9.8 78 25-106 393-473 (517)
74 2o5v_A DNA replication and rep 99.5 9.3E-15 3.2E-19 148.9 7.7 87 22-117 258-354 (359)
75 1e69_A Chromosome segregation 99.5 3.7E-14 1.3E-18 142.7 10.8 89 25-117 216-311 (322)
76 2npi_A Protein CLP1; CLP1-PCF1 99.5 2.5E-15 8.6E-20 158.0 -0.6 100 5-117 219-336 (460)
77 3auy_A DNA double-strand break 99.4 4.5E-13 1.5E-17 137.4 11.1 98 3-104 244-359 (371)
78 1ye8_A Protein THEP1, hypothet 99.4 7.3E-13 2.5E-17 121.9 7.9 78 25-110 73-159 (178)
79 4gp7_A Metallophosphoesterase; 99.3 5.9E-13 2E-17 121.4 3.7 62 28-90 83-160 (171)
80 1w1w_A Structural maintenance 99.3 3.9E-12 1.3E-16 133.0 10.0 76 26-104 331-410 (430)
81 3b85_A Phosphate starvation-in 99.1 3.6E-12 1.2E-16 120.1 -2.2 52 32-90 108-159 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.1 7.5E-11 2.5E-15 126.4 6.2 81 25-107 350-444 (525)
83 3thx_A DNA mismatch repair pro 99.0 4.9E-10 1.7E-14 126.6 7.3 91 25-117 718-811 (934)
84 1tq4_A IIGP1, interferon-induc 98.9 5.5E-11 1.9E-15 123.0 -2.8 93 2-101 135-248 (413)
85 1cr0_A DNA primase/helicase; R 98.9 4.8E-09 1.6E-13 103.7 8.9 81 27-108 128-237 (296)
86 2w0m_A SSO2452; RECA, SSPF, un 98.7 4.2E-08 1.4E-12 92.4 8.3 79 28-106 103-192 (235)
87 3thx_B DNA mismatch repair pro 98.6 2.5E-08 8.4E-13 112.5 6.6 82 26-110 733-816 (918)
88 2v9p_A Replication protein E1; 98.6 7E-10 2.4E-14 110.2 -5.9 73 26-123 198-270 (305)
89 1nlf_A Regulatory protein REPA 98.6 6.3E-08 2.2E-12 94.8 7.5 79 4-90 99-182 (279)
90 2pt7_A CAG-ALFA; ATPase, prote 98.6 7.4E-09 2.5E-13 104.3 0.6 74 31-114 225-298 (330)
91 2o8b_B DNA mismatch repair pro 98.6 8.2E-08 2.8E-12 109.8 9.0 86 28-116 851-939 (1022)
92 1znw_A Guanylate kinase, GMP k 98.5 5.7E-10 1.9E-14 104.6 -8.4 62 42-104 137-202 (207)
93 2ehv_A Hypothetical protein PH 98.4 2.7E-07 9.3E-12 87.9 6.1 73 30-104 119-206 (251)
94 2cvh_A DNA repair and recombin 98.4 6.3E-07 2.2E-11 83.7 8.5 79 28-106 84-185 (220)
95 4a74_A DNA repair and recombin 98.3 6.3E-07 2.2E-11 84.3 5.7 103 3-107 75-201 (231)
96 3b9q_A Chloroplast SRP recepto 98.2 2.3E-07 7.8E-12 92.1 1.9 73 26-108 202-284 (302)
97 1pzn_A RAD51, DNA repair and r 98.2 8.5E-07 2.9E-11 89.8 5.7 83 30-113 208-309 (349)
98 1ewq_A DNA mismatch repair pro 98.2 7.2E-07 2.4E-11 99.1 5.1 66 26-97 633-704 (765)
99 1wb9_A DNA mismatch repair pro 98.2 7.1E-07 2.4E-11 99.6 4.0 82 28-112 669-751 (800)
100 2og2_A Putative signal recogni 98.1 6.7E-07 2.3E-11 90.7 1.5 73 26-108 259-341 (359)
101 2obl_A ESCN; ATPase, hydrolase 98.1 1.9E-07 6.4E-12 94.5 -2.6 79 26-117 169-253 (347)
102 2dpy_A FLII, flagellum-specifi 98.1 2E-07 6.8E-12 97.3 -3.4 80 26-118 256-343 (438)
103 1z6g_A Guanylate kinase; struc 98.0 3E-08 1E-12 93.7 -10.1 50 27-76 121-175 (218)
104 3sop_A Neuronal-specific septi 97.9 9.2E-07 3.1E-11 86.4 -0.9 55 26-89 96-150 (270)
105 1tf7_A KAIC; homohexamer, hexa 97.9 2.5E-05 8.6E-10 83.3 8.8 73 35-108 126-212 (525)
106 2eyu_A Twitching motility prot 97.9 7E-06 2.4E-10 79.6 4.1 60 36-105 88-147 (261)
107 3asz_A Uridine kinase; cytidin 97.8 6.3E-08 2.2E-12 90.4 -12.3 83 3-90 69-162 (211)
108 2i3b_A HCR-ntpase, human cance 97.7 1.5E-06 5E-11 80.3 -2.9 79 26-112 81-169 (189)
109 3jvv_A Twitching mobility prot 97.6 1.8E-05 6.2E-10 80.2 2.7 59 38-106 188-246 (356)
110 3aez_A Pantothenate kinase; tr 97.6 1.6E-06 5.5E-11 86.4 -5.2 53 3-61 157-209 (312)
111 3ec2_A DNA replication protein 97.6 3.4E-05 1.1E-09 69.9 4.0 50 42-92 96-146 (180)
112 1n0w_A DNA repair protein RAD5 97.6 0.00012 4.3E-09 68.9 7.6 79 28-106 98-209 (243)
113 1pui_A ENGB, probable GTP-bind 97.5 5.7E-05 1.9E-09 69.6 4.8 56 25-81 146-202 (210)
114 2qnr_A Septin-2, protein NEDD5 97.4 7.6E-06 2.6E-10 81.1 -3.9 58 25-90 110-168 (301)
115 3lda_A DNA repair protein RAD5 97.1 0.00076 2.6E-08 69.3 7.7 73 34-106 259-363 (400)
116 2bdt_A BH3686; alpha-beta prot 97.1 2.5E-06 8.7E-11 78.0 -9.9 81 30-118 96-183 (189)
117 2r6a_A DNAB helicase, replicat 97.0 0.0019 6.6E-08 67.3 9.9 80 27-108 294-401 (454)
118 2kjq_A DNAA-related protein; s 97.0 0.00028 9.6E-09 62.2 2.8 49 42-92 79-128 (149)
119 2jeo_A Uridine-cytidine kinase 97.0 4.6E-05 1.6E-09 72.8 -2.7 76 25-121 113-189 (245)
120 1sxj_E Activator 1 40 kDa subu 96.7 0.0012 4.3E-08 65.9 4.8 45 44-91 132-176 (354)
121 1lw7_A Transcriptional regulat 96.5 9.5E-05 3.2E-09 75.0 -4.4 75 28-104 258-342 (365)
122 2dr3_A UPF0273 protein PH0284; 96.5 0.0075 2.6E-07 56.5 8.7 61 45-105 127-196 (247)
123 3szr_A Interferon-induced GTP- 96.5 0.002 6.9E-08 69.8 5.1 78 44-121 144-239 (608)
124 1rj9_A FTSY, signal recognitio 96.2 0.0015 5E-08 64.7 2.1 57 29-90 203-259 (304)
125 2ewv_A Twitching motility prot 96.0 0.0025 8.5E-08 64.8 2.8 59 36-104 199-257 (372)
126 2f1r_A Molybdopterin-guanine d 95.9 0.00029 1E-08 63.7 -4.3 69 4-79 85-164 (171)
127 1nij_A Hypothetical protein YJ 95.6 0.0015 5.2E-08 64.8 -0.8 57 28-98 141-197 (318)
128 2bbw_A Adenylate kinase 4, AK4 95.6 0.0015 5.3E-08 62.0 -0.8 45 25-76 149-198 (246)
129 2qag_C Septin-7; cell cycle, c 95.6 0.0016 5.3E-08 67.3 -0.9 54 29-88 119-176 (418)
130 1udx_A The GTP-binding protein 95.6 0.0022 7.5E-08 66.1 0.2 70 25-99 249-318 (416)
131 2zr9_A Protein RECA, recombina 95.5 0.041 1.4E-06 55.2 9.2 78 35-112 126-236 (349)
132 1odf_A YGR205W, hypothetical 3 94.8 0.00078 2.7E-08 66.1 -5.7 36 26-63 132-169 (290)
133 2ce7_A Cell division protein F 94.5 0.076 2.6E-06 55.5 8.0 61 30-90 92-165 (476)
134 2xau_A PRE-mRNA-splicing facto 94.3 0.025 8.5E-07 63.0 4.2 79 27-107 189-270 (773)
135 1s96_A Guanylate kinase, GMP k 93.3 0.12 4.2E-06 48.1 6.4 63 40-122 101-163 (219)
136 1ni3_A YCHF GTPase, YCHF GTP-b 92.7 0.00067 2.3E-08 69.4 -11.0 67 46-116 139-210 (392)
137 2ius_A DNA translocase FTSK; n 92.4 0.011 3.8E-07 62.4 -2.5 84 5-91 247-344 (512)
138 2z4s_A Chromosomal replication 92.3 0.038 1.3E-06 57.3 1.4 69 46-115 194-264 (440)
139 1g5t_A COB(I)alamin adenosyltr 91.8 0.14 4.9E-06 46.8 4.5 71 34-106 106-180 (196)
140 4a1f_A DNAB helicase, replicat 91.1 0.3 1E-05 48.7 6.3 56 27-87 108-164 (338)
141 3bh0_A DNAB-like replicative h 90.5 0.81 2.8E-05 44.8 8.9 60 29-88 134-230 (315)
142 1vma_A Cell division protein F 90.4 0.23 7.8E-06 48.8 4.7 45 28-75 165-212 (306)
143 1zp6_A Hypothetical protein AT 90.4 0.04 1.4E-06 49.5 -0.8 53 26-87 107-159 (191)
144 3euj_A Chromosome partition pr 90.0 0.5 1.7E-05 49.4 7.1 71 26-104 377-464 (483)
145 1ls1_A Signal recognition part 89.5 0.95 3.3E-05 44.0 8.4 45 30-74 164-209 (295)
146 2e87_A Hypothetical protein PH 87.7 0.67 2.3E-05 46.2 6.0 62 26-90 229-293 (357)
147 1lw7_A Transcriptional regulat 87.6 0.31 1.1E-05 48.8 3.5 29 28-56 296-329 (365)
148 2gza_A Type IV secretion syste 87.6 0.12 4E-06 52.1 0.4 70 30-109 236-305 (361)
149 2px0_A Flagellar biosynthesis 87.3 0.26 9.1E-06 48.0 2.7 69 40-111 176-247 (296)
150 3b9p_A CG5977-PA, isoform A; A 85.6 2.1 7.2E-05 40.9 8.2 74 30-103 97-186 (297)
151 1lvg_A Guanylate kinase, GMP k 82.8 0.033 1.1E-06 50.9 -5.9 54 42-105 120-173 (198)
152 2b8t_A Thymidine kinase; deoxy 80.8 2.3 8E-05 39.5 6.0 53 46-104 89-150 (223)
153 2z43_A DNA repair and recombin 78.9 2.5 8.6E-05 41.4 5.9 55 35-89 189-258 (324)
154 1oix_A RAS-related protein RAB 77.2 0.57 1.9E-05 41.9 0.5 38 34-73 151-188 (191)
155 1v5w_A DMC1, meiotic recombina 76.6 4 0.00014 40.3 6.6 55 35-89 204-274 (343)
156 1fnn_A CDC6P, cell division co 75.8 8.3 0.00028 37.9 8.8 45 45-90 124-170 (389)
157 2qag_B Septin-6, protein NEDD5 73.2 1.9 6.5E-05 44.2 3.2 58 27-88 160-218 (427)
158 2q6t_A DNAB replication FORK h 71.0 11 0.00037 38.6 8.4 49 40-88 302-362 (444)
159 1u94_A RECA protein, recombina 70.6 19 0.00066 35.6 9.9 53 36-88 129-199 (356)
160 2orv_A Thymidine kinase; TP4A 70.1 7.9 0.00027 36.1 6.4 54 44-104 88-150 (234)
161 3c8u_A Fructokinase; YP_612366 69.7 0.046 1.6E-06 50.2 -9.0 74 27-122 110-184 (208)
162 2qtf_A Protein HFLX, GTP-bindi 69.6 2.3 7.7E-05 42.6 2.8 69 4-77 281-354 (364)
163 2r8r_A Sensor protein; KDPD, P 68.4 5.7 0.0002 37.0 5.1 47 40-87 78-125 (228)
164 1l8q_A Chromosomal replication 67.4 4.4 0.00015 39.3 4.3 47 44-91 96-143 (324)
165 3bgw_A DNAB-like replicative h 65.5 19 0.00064 36.9 8.9 43 46-88 308-359 (444)
166 3hr8_A Protein RECA; alpha and 65.5 33 0.0011 34.0 10.3 72 35-106 126-230 (356)
167 2eyu_A Twitching motility prot 65.0 0.014 4.8E-07 56.2 -14.1 68 16-88 161-239 (261)
168 3k1j_A LON protease, ATP-depen 64.7 1.5 5.3E-05 46.9 0.4 46 27-73 182-227 (604)
169 2w58_A DNAI, primosome compone 63.0 4 0.00014 36.4 2.8 52 44-96 113-166 (202)
170 1in4_A RUVB, holliday junction 62.5 0.43 1.5E-05 47.1 -4.1 52 26-99 160-211 (334)
171 1xx6_A Thymidine kinase; NESG, 62.4 13 0.00045 33.3 6.2 53 46-104 81-142 (191)
172 2j9r_A Thymidine kinase; TK1, 58.8 14 0.00046 34.1 5.6 53 46-104 101-162 (214)
173 2rcn_A Probable GTPase ENGC; Y 58.8 1.8 6.1E-05 43.3 -0.4 52 3-75 294-345 (358)
174 2qm8_A GTPase/ATPase; G protei 58.4 4.2 0.00014 40.1 2.3 45 27-75 209-259 (337)
175 2f9l_A RAB11B, member RAS onco 58.1 5.6 0.00019 35.3 2.9 37 37-75 130-166 (199)
176 3e70_C DPA, signal recognition 57.6 11 0.00037 37.1 5.1 45 38-89 235-279 (328)
177 2ewv_A Twitching motility prot 54.5 0.03 1E-06 56.8 -14.5 59 29-90 284-352 (372)
178 3cf0_A Transitional endoplasmi 54.3 17 0.00057 34.8 5.8 52 39-90 101-165 (301)
179 3szr_A Interferon-induced GTP- 53.8 7.6 0.00026 41.6 3.5 61 26-87 162-223 (608)
180 4ag6_A VIRB4 ATPase, type IV s 52.8 21 0.00072 35.5 6.5 45 46-91 262-309 (392)
181 2oap_1 GSPE-2, type II secreti 50.2 0.019 6.4E-07 60.8 -17.4 58 27-98 399-458 (511)
182 3h4m_A Proteasome-activating n 49.7 21 0.00072 33.4 5.6 52 38-89 102-166 (285)
183 1q57_A DNA primase/helicase; d 48.7 58 0.002 33.5 9.3 52 37-89 343-404 (503)
184 2i1q_A DNA repair and recombin 47.3 28 0.00096 33.5 6.2 52 37-88 192-258 (322)
185 2qby_A CDC6 homolog 1, cell di 47.2 7.6 0.00026 37.9 2.1 44 46-90 128-174 (386)
186 1njg_A DNA polymerase III subu 47.2 12 0.00042 33.3 3.4 42 46-90 126-167 (250)
187 2qgz_A Helicase loader, putati 47.1 13 0.00044 36.0 3.7 53 44-97 212-266 (308)
188 3llm_A ATP-dependent RNA helic 45.6 30 0.001 31.6 5.8 67 30-99 162-229 (235)
189 3bos_A Putative DNA replicatio 45.2 17 0.00059 32.6 4.1 45 45-90 103-149 (242)
190 3d8b_A Fidgetin-like protein 1 45.2 52 0.0018 32.2 7.9 66 36-101 166-246 (357)
191 1tue_A Replication protein E1; 45.1 25 0.00087 32.2 5.1 75 45-123 102-203 (212)
192 2orw_A Thymidine kinase; TMTK, 42.3 18 0.00063 31.9 3.7 52 46-103 76-136 (184)
193 4dgh_A Sulfate permease family 41.1 28 0.00095 28.6 4.4 90 28-120 29-121 (130)
194 2x8a_A Nuclear valosin-contain 41.0 0.45 1.6E-05 45.7 -7.9 44 26-71 135-190 (274)
195 1sxj_D Activator 1 41 kDa subu 39.1 18 0.00062 34.9 3.3 42 46-90 133-174 (353)
196 1xp8_A RECA protein, recombina 37.2 81 0.0028 31.2 7.8 54 35-88 139-210 (366)
197 1b9m_A Protein (mode); DNA-bin 36.8 5.1 0.00017 37.7 -1.1 41 2-48 53-93 (265)
198 1p9r_A General secretion pathw 36.3 0.8 2.7E-05 46.9 -7.3 36 7-51 279-314 (418)
199 1jjv_A Dephospho-COA kinase; P 36.1 4.7 0.00016 36.1 -1.4 70 30-104 61-131 (206)
200 4dgf_A Sulfate transporter sul 35.1 29 0.00099 28.8 3.6 51 45-98 50-101 (135)
201 3hu3_A Transitional endoplasmi 34.6 43 0.0015 34.6 5.5 52 39-90 290-351 (489)
202 2qz4_A Paraplegin; AAA+, SPG7, 34.5 92 0.0031 28.2 7.4 52 39-90 91-156 (262)
203 2zts_A Putative uncharacterize 34.0 46 0.0016 29.9 5.2 60 44-103 133-205 (251)
204 1ega_A Protein (GTP-binding pr 33.6 19 0.00063 34.6 2.4 65 29-101 101-170 (301)
205 1jcn_A Inosine monophosphate d 33.3 0.61 2.1E-05 49.1 -9.0 74 41-121 28-104 (514)
206 3cmw_A Protein RECA, recombina 32.2 1.5E+02 0.005 35.7 10.0 71 35-105 797-900 (1706)
207 3llo_A Prestin; STAS domain, c 32.0 37 0.0013 28.2 3.8 72 46-120 63-137 (143)
208 1m3s_A Hypothetical protein YC 31.8 64 0.0022 27.9 5.5 42 65-107 93-134 (186)
209 2qp9_X Vacuolar protein sortin 31.0 1.2E+02 0.0042 29.5 8.0 64 39-102 136-213 (355)
210 1tk9_A Phosphoheptose isomeras 30.6 63 0.0021 28.0 5.2 41 65-106 124-164 (188)
211 2xhz_A KDSD, YRBH, arabinose 5 29.7 63 0.0022 27.8 5.1 41 65-106 110-150 (183)
212 2chg_A Replication factor C sm 29.5 51 0.0017 28.6 4.5 43 45-90 101-143 (226)
213 2q6t_A DNAB replication FORK h 29.1 1E+02 0.0034 31.2 7.1 55 28-87 264-318 (444)
214 3sho_A Transcriptional regulat 29.0 68 0.0023 27.8 5.2 42 65-107 101-142 (187)
215 2kln_A Probable sulphate-trans 28.9 17 0.00059 29.9 1.1 74 46-122 47-122 (130)
216 3ny7_A YCHM protein, sulfate t 28.8 35 0.0012 27.6 3.0 51 45-99 44-95 (118)
217 2yhs_A FTSY, cell division pro 28.0 37 0.0013 35.4 3.5 49 34-88 398-448 (503)
218 2xbl_A Phosphoheptose isomeras 26.9 76 0.0026 27.7 5.1 41 65-106 130-170 (198)
219 3oiz_A Antisigma-factor antago 26.6 54 0.0018 25.5 3.6 54 44-100 41-95 (99)
220 3fxa_A SIS domain protein; str 26.2 58 0.002 28.7 4.2 42 65-107 106-147 (201)
221 2vhj_A Ntpase P4, P4; non- hyd 25.3 1.3E+02 0.0044 29.4 6.7 56 32-88 168-235 (331)
222 1vim_A Hypothetical protein AF 25.1 86 0.003 27.7 5.2 62 45-107 72-144 (200)
223 1xwi_A SKD1 protein; VPS4B, AA 24.7 2.8E+02 0.0096 26.3 9.2 64 39-102 98-175 (322)
224 1x92_A APC5045, phosphoheptose 24.0 1.1E+02 0.0039 26.6 5.8 41 65-106 127-170 (199)
225 3co5_A Putative two-component 23.8 1.1E+02 0.0039 25.1 5.4 43 45-89 74-116 (143)
226 2p65_A Hypothetical protein PF 23.7 16 0.00055 31.2 -0.1 44 46-89 115-162 (187)
227 3t34_A Dynamin-related protein 23.6 66 0.0022 31.4 4.4 57 29-87 155-212 (360)
228 3etn_A Putative phosphosugar i 23.0 1.1E+02 0.0038 27.5 5.6 42 65-107 120-163 (220)
229 4fcw_A Chaperone protein CLPB; 22.6 1.4E+02 0.0046 27.9 6.4 56 39-95 111-176 (311)
230 3fj1_A Putative phosphosugar i 22.4 1.1E+02 0.0037 29.8 5.7 43 64-107 104-146 (344)
231 3cmw_A Protein RECA, recombina 21.8 2.9E+02 0.0098 33.3 9.9 70 38-107 451-553 (1706)
232 2i2w_A Phosphoheptose isomeras 21.5 97 0.0033 27.6 4.8 41 65-106 145-185 (212)
233 1jr3_A DNA polymerase III subu 20.3 61 0.0021 31.3 3.4 42 46-90 119-160 (373)
234 3eua_A Putative fructose-amino 20.3 1.2E+02 0.004 29.3 5.4 43 64-107 87-129 (329)
235 1lv7_A FTSH; alpha/beta domain 20.3 1.5E+02 0.0051 26.9 5.9 50 41-90 99-161 (257)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=9.3e-25 Score=215.17 Aligned_cols=112 Identities=26% Similarity=0.424 Sum_probs=102.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++.++. .+.+|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++.|+|
T Consensus 122 ~~~~~~l~~~~L~~~~~~-----~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~t 196 (275)
T 3gfo_A 122 KRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGIT 196 (275)
T ss_dssp HHHHHHHHHTTCGGGTTS-----BGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHcCCchhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCE
Confidence 468899999999887775 456799999999999999999999999999999999999999999999997445999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++.++|||+++|++|++++.|+++++.+
T Consensus 197 vi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 197 IIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp EEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999986 6788999999999999999999998764
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=1.2e-24 Score=221.41 Aligned_cols=111 Identities=26% Similarity=0.434 Sum_probs=103.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||.+.+++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|
T Consensus 142 ~~v~~lL~~vgL~~~~~~-----~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~T 216 (366)
T 3tui_C 142 RRVTELLSLVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216 (366)
T ss_dssp HHHHHHHHHHTCGGGTTC-----CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 468899999999887775 567899999999999999999999999999999999999999999999998777999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||++||++. .+.++|||+++|++|++++.|+++++.
T Consensus 217 ii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 217 ILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999975 788999999999999999999998875
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=3.1e-24 Score=218.15 Aligned_cols=112 Identities=21% Similarity=0.399 Sum_probs=103.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++.+|+ ++.+|||||||||+|||||+.+|+++||||||+|||+..+.++.+.++++.++.|.|
T Consensus 117 ~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~t 191 (359)
T 3fvq_A 117 QRIEAMLELTGISELAGR-----YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191 (359)
T ss_dssp HHHHHHHHHHTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 468899999999988775 467899999999999999999999999999999999999999999988887678999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 192 vi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 192 AVFVSHDRE-EALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp EEEECCCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999975 8899999999999999999999998764
No 4
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=3.2e-24 Score=210.52 Aligned_cols=111 Identities=26% Similarity=0.381 Sum_probs=101.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhh------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLT------NPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++++++++.+||.+..++. +.+|||||||||+||++|+. +|++++|||||+|||+.++..+++.|++++
T Consensus 120 ~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 120 QALQQVMAQTDCLALAQRD-----YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp HHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 4688999999999887754 56799999999999999999 999999999999999999999999999998
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
++.|+|||+++|++. ++.++|||+++|++|++++.|+++++.
T Consensus 195 ~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 195 RQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 666789999999975 788899999999999999999998874
No 5
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=3.3e-24 Score=207.37 Aligned_cols=112 Identities=25% Similarity=0.363 Sum_probs=101.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..+.. +.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++.|+|
T Consensus 105 ~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~t 179 (240)
T 2onk_A 105 RRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP 179 (240)
T ss_dssp HHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 4678899999998877754 56799999999999999999999999999999999999999999999997556999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++.++||++++|++|++++.|+++++.+
T Consensus 180 vi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 180 ILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999975 7788999999999999999999988753
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.91 E-value=6.2e-24 Score=208.03 Aligned_cols=110 Identities=30% Similarity=0.449 Sum_probs=100.5
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|
T Consensus 138 ~~~~~~l~~~~L~~~~~~-----~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~t 211 (263)
T 2olj_A 138 AKAMELLDKVGLKDKAHA-----YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMT 211 (263)
T ss_dssp HHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCE
T ss_pred HHHHHHHHHCCCchHhcC-----ChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCE
Confidence 357889999999887775 4567999999999999999999999999999999999999999999999974 4999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 212 vi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 212 MVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999975 778899999999999999999998775
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=5.5e-24 Score=217.73 Aligned_cols=112 Identities=28% Similarity=0.497 Sum_probs=103.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ ++.+|||||||||+|||||+.+|+++||||||+|||+..+.++.+.|+++.++.|.|
T Consensus 112 ~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~t 186 (381)
T 3rlf_A 112 QRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186 (381)
T ss_dssp HHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 468899999999987775 567899999999999999999999999999999999999999999999998677999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 187 ii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 187 MIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999975 8899999999999999999999998763
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.90 E-value=7.7e-24 Score=207.50 Aligned_cols=110 Identities=30% Similarity=0.449 Sum_probs=100.5
Q ss_pred hHHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||++. .++ .+.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+
T Consensus 131 ~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~ 204 (262)
T 1b0u_A 131 ERALKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGK 204 (262)
T ss_dssp HHHHHHHHHTTCCHHHHTS-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHcCCCchhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC
Confidence 357889999999887 775 4567999999999999999999999999999999999999999999999974 499
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. ++.++||++++|++|+++..|+++++.
T Consensus 205 tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 205 TMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp CEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999975 778899999999999999999998775
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.90 E-value=1e-23 Score=214.81 Aligned_cols=112 Identities=26% Similarity=0.435 Sum_probs=103.4
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ ++.+|||||||||+|||+|+.+|++++|||||+|||+..+..+.+.|+++.++.|.|
T Consensus 112 ~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 186 (359)
T 2yyz_A 112 KRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186 (359)
T ss_dssp HHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 468999999999988775 457899999999999999999999999999999999999999999999998667999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 187 vi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 187 SVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999975 7889999999999999999999998763
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.90 E-value=9.6e-24 Score=206.29 Aligned_cols=107 Identities=25% Similarity=0.422 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+||
T Consensus 133 ~~~~~l~~~~l~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tv 206 (257)
T 1g6h_A 133 KAFKILEFLKLSHLYDRK-----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITF 206 (257)
T ss_dssp HHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHcCCchhhCCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEE
Confidence 578899999998877754 567999999999999999999999999999999999999999999999974 49999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhh
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~ 116 (494)
|+++|++. ++.++||++++|++|++++.|++++
T Consensus 207 i~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 207 LIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred EEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999976 6788999999999999999999888
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.90 E-value=9.4e-24 Score=214.59 Aligned_cols=112 Identities=24% Similarity=0.487 Sum_probs=103.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ ++.+|||||||||+|||+|+.+|++++|||||+|||+..+.++.+.|+++.++.|.|
T Consensus 124 ~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 198 (355)
T 1z47_A 124 ARVRELLRFMRLESYANR-----FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198 (355)
T ss_dssp HHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 468899999999988775 467899999999999999999999999999999999999999999999998666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 199 vi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999975 7889999999999999999999988753
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.90 E-value=8.9e-24 Score=203.78 Aligned_cols=110 Identities=28% Similarity=0.426 Sum_probs=96.2
Q ss_pred hHHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++.++++.+||.+. .+. .+.+|||||||||+||++|+.+|++++|||||+|||+.++..+++.+++++++.|+
T Consensus 123 ~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~ 197 (235)
T 3tif_A 123 KRALECLKMAELEERFANH-----KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK 197 (235)
T ss_dssp HHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCChhhhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 357788999999764 353 56789999999999999999999999999999999999999999999999865699
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. +.+.|||+++|++|+++..|+++++.
T Consensus 198 tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 198 TVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp EEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC---
T ss_pred EEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999974 45899999999999999999887643
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.1e-23 Score=214.72 Aligned_cols=112 Identities=28% Similarity=0.455 Sum_probs=103.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..+. ++.+|||||||||+|||+|+.+|++++|||||+|||+..+..+.+.|+++.++.|.|
T Consensus 112 ~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 186 (362)
T 2it1_A 112 KKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGIT 186 (362)
T ss_dssp HHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 468899999999988775 457899999999999999999999999999999999999999999999997666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 187 vi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 187 TVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999975 7889999999999999999999988753
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=1e-23 Score=214.64 Aligned_cols=112 Identities=30% Similarity=0.537 Sum_probs=103.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..+. ++++|||||||||+|||+|+.+|++++|||||+|||+..+.++.+.|+++.++.|.|
T Consensus 119 ~~v~~~l~~~~L~~~~~~-----~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 193 (353)
T 1oxx_K 119 KRVEEVAKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193 (353)
T ss_dssp HHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 468899999999988775 457899999999999999999999999999999999999999999999997667999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 194 vi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 194 LLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999975 7889999999999999999999988753
No 15
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.90 E-value=1.4e-23 Score=213.14 Aligned_cols=111 Identities=27% Similarity=0.381 Sum_probs=102.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+ ++.+|||||||||+|||+|+.+|++++|||||+|||+..+..+.+.|+++.++.|.|
T Consensus 106 ~~v~~~l~~~~L~~~~~~-----~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDR-----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp HHHHHHHHHTTCTTTTTS-----CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 468899999999988775 457899999999999999999999999999999999999999999999998667999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+|++||++. ++..++||+++|++|+++..|+++++.
T Consensus 181 ii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 181 VLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999975 788999999999999999999998875
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=1.8e-23 Score=214.29 Aligned_cols=112 Identities=25% Similarity=0.458 Sum_probs=103.2
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..+. ++.+|||||||||+|||+|+.+|+++||||||+|||+..+..+.+.|+++.++.|.|
T Consensus 118 ~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 192 (372)
T 1g29_1 118 QRVREVAELLGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192 (372)
T ss_dssp HHHHHHHHHHTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHCCCchHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 468899999999988775 457899999999999999999999999999999999999999999999998667999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 193 vi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 193 TIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999975 7889999999999999999999998763
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=2.1e-23 Score=203.54 Aligned_cols=111 Identities=29% Similarity=0.413 Sum_probs=101.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++. +.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+|
T Consensus 125 ~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~-~~g~t 198 (256)
T 1vpl_A 125 EMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS-QEGLT 198 (256)
T ss_dssp HHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCE
T ss_pred HHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH-hCCCE
Confidence 3578899999998887754 56799999999999999999999999999999999999999999999997 45999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
||+++|++. ++..+||++++|++|++++.|+++++.+
T Consensus 199 iiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 199 ILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999975 6788899999999999999999988764
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.89 E-value=1.9e-23 Score=213.73 Aligned_cols=112 Identities=23% Similarity=0.406 Sum_probs=103.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ ++.+|||||||||+|||+|+.+|+++||||||+|||+..+..+.+.|+++.++.|.|
T Consensus 120 ~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 194 (372)
T 1v43_A 120 KRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194 (372)
T ss_dssp HHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 468899999999988775 467899999999999999999999999999999999999999999999998666999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|++||++. ++..++||+++|++|+++..|+++++.+
T Consensus 195 vi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 195 TIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999975 7889999999999999999999998763
No 19
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=2.6e-23 Score=199.16 Aligned_cols=105 Identities=26% Similarity=0.362 Sum_probs=95.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++ |+|
T Consensus 119 ~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~t 192 (224)
T 2pcj_A 119 ERGEYLLSELGLGDKLSR-----KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTS 192 (224)
T ss_dssp HHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCE
T ss_pred HHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCE
Confidence 357889999999887775 45679999999999999999999999999999999999999999999999754 999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCCh
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~ 114 (494)
||+++|++. .+ +.||++++|++|++++.|+.
T Consensus 193 vi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 193 IVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp EEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred EEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 999999975 45 89999999999999999863
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=2.4e-23 Score=201.37 Aligned_cols=109 Identities=21% Similarity=0.395 Sum_probs=98.2
Q ss_pred HHHHHHHHcC-CcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 3 YVDHIINVLD-LANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 3 ~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+++++++.++ |.+..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|
T Consensus 118 ~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t 191 (240)
T 1ji0_A 118 DLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTT 191 (240)
T ss_dssp HHHHHHHHCHHHHTTTTS-----BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHcccHhhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCE
Confidence 5678888884 8776664 4678999999999999999999999999999999999999999999999974 6999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 192 vi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 192 ILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999975 678899999999999999999988764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.89 E-value=3.1e-23 Score=203.62 Aligned_cols=111 Identities=26% Similarity=0.515 Sum_probs=100.8
Q ss_pred hHHHHHHHHcCCc--ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 2 TYVDHIINVLDLA--NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 2 ~~v~~~l~~l~L~--~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
++++++++.+||. +..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 115 ~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g 188 (266)
T 2yz2_A 115 PLVKKAMEFVGLDFDSFKDR-----VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-G 188 (266)
T ss_dssp HHHHHHHHHTTCCHHHHTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHcCcCCcccccC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-C
Confidence 3578999999998 77775 45679999999999999999999999999999999999999999999999744 9
Q ss_pred cEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|||+++|++. .+..+||++++|++|++++.|+++++.+
T Consensus 189 ~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 189 KTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999986 6778899999999999999999888764
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=4.2e-23 Score=201.18 Aligned_cols=110 Identities=33% Similarity=0.444 Sum_probs=99.3
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++. +.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|
T Consensus 107 ~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~t 181 (253)
T 2nq2_C 107 QVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181 (253)
T ss_dssp HHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCE
T ss_pred HHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 3578899999998877754 56799999999999999999999999999999999999999999999997545999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
||+++|++. ++.+.||++++|++|+ ++.|+++++.
T Consensus 182 vi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 182 VVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp EEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred EEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999975 6778999999999999 9999987763
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.89 E-value=3.7e-23 Score=204.34 Aligned_cols=109 Identities=30% Similarity=0.448 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||++..++. +.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+||
T Consensus 141 ~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv 214 (279)
T 2ihy_A 141 EAHQLLKLVGMSAKAQQY-----IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTL 214 (279)
T ss_dssp HHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEE
Confidence 578899999998877754 5679999999999999999999999999999999999999999999999754 9999
Q ss_pred --EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 83 --VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 83 --i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 215 ~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 215 AMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999975 677899999999999999999987763
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.88 E-value=9.2e-23 Score=198.22 Aligned_cols=110 Identities=25% Similarity=0.385 Sum_probs=100.0
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCC-------EeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPA-------LMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~-------~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
++++++++.+||++..++ .+.+||||||||++||++|+.+|+ +++|||||+|||+.++..+.+.|+++
T Consensus 105 ~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 105 ELLNDVAGALALDDKLGR-----STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp HHHHHHHHHTTCGGGTTS-----BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 467899999999887775 456799999999999999999999 99999999999999999999999999
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+++ |+|||+++|++. .+.+.+|++++|++|++++.|+++++.
T Consensus 180 ~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 180 SQQ-GLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHT-TCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred HhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 744 999999999975 677899999999999999999987764
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.88 E-value=9e-23 Score=198.59 Aligned_cols=107 Identities=25% Similarity=0.328 Sum_probs=91.6
Q ss_pred HHHHHHHHcCC-cccccccccCccCCC-CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 3 YVDHIINVLDL-ANCQHTIIGDYMKRG-LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 3 ~v~~~l~~l~L-~~~~~~~vg~~~~~~-lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++++++.+|| .+..++. +.+ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+
T Consensus 121 ~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~-~~g~ 194 (250)
T 2d2e_A 121 KVKKALELLDWDESYLSRY-----LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR-GPNF 194 (250)
T ss_dssp HHHHHHHHHTCCGGGGGSB-----TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC-STTC
T ss_pred HHHHHHHHcCCChhHhcCC-----cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hcCC
Confidence 57789999999 4666654 456 99999999999999999999999999999999999999999999996 4699
Q ss_pred EEEEEecCcchHHHhc-cCeEEEEeCCeEeEeCChhh
Q psy16346 81 TVVVTVHQPSSQIFHM-FDKLLLLCNGQTAYFGDTNK 116 (494)
Q Consensus 81 tii~~~H~p~~~i~~~-~d~v~ll~~G~~~~~G~~~~ 116 (494)
|||+++|++. .+... +|++++|++|++++.|+++.
T Consensus 195 tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 195 GALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred EEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999975 56667 59999999999999999873
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.88 E-value=1.2e-22 Score=199.66 Aligned_cols=116 Identities=25% Similarity=0.375 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCc-ccccccccCccCC-CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 3 YVDHIINVLDLA-NCQHTIIGDYMKR-GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 3 ~v~~~l~~l~L~-~~~~~~vg~~~~~-~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++++++.+||. +..++ .+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +.|+
T Consensus 142 ~~~~~l~~~gl~~~~~~~-----~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~~g~ 215 (267)
T 2zu0_C 142 LMEEKIALLKMPEDLLTR-----SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR-DGKR 215 (267)
T ss_dssp HHHHHHHHTTCCTTTTTS-----BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-CSSC
T ss_pred HHHHHHHHcCCChhHhcC-----CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCC
Confidence 577899999996 45554 344 599999999999999999999999999999999999999999999986 4599
Q ss_pred EEEEEecCcchHHHhc-cCeEEEEeCCeEeEeCChhhHHHHHHhcCC
Q psy16346 81 TVVVTVHQPSSQIFHM-FDKLLLLCNGQTAYFGDTNKVVDFFHNIGL 126 (494)
Q Consensus 81 tii~~~H~p~~~i~~~-~d~v~ll~~G~~~~~G~~~~~~~~f~~~g~ 126 (494)
|||+++|++. .+... +|++++|++|++++.|+++++.. .+..++
T Consensus 216 tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 216 SFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 9999999975 55565 89999999999999999987653 343433
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=2.5e-22 Score=197.61 Aligned_cols=108 Identities=23% Similarity=0.314 Sum_probs=92.4
Q ss_pred HHHHHHc--CCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 5 DHIINVL--DLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 5 ~~~l~~l--~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++.+ ||++..+. .+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+||
T Consensus 136 ~~~l~~l~~gl~~~~~~-----~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tv 210 (271)
T 2ixe_A 136 HDFISGFPQGYDTEVGE-----TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTV 210 (271)
T ss_dssp HHHHHHSTTGGGSBCCG-----GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEE
T ss_pred HHHHHhhhcchhhhhcC-----CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEE
Confidence 3455555 55544443 4678999999999999999999999999999999999999999999999864568999
Q ss_pred EEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
|+++|++. .+. .||++++|++|+++..|+++++.+
T Consensus 211 iivtHd~~-~~~-~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 211 LLITQQLS-LAE-RAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EEECSCHH-HHT-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 99999975 454 599999999999999999988754
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=4.8e-22 Score=193.08 Aligned_cols=111 Identities=26% Similarity=0.482 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCccccccc-------ccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTI-------IGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~-------vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
+++++++.+++.+..++. ++ ....+||||||||++|||+|+.+|++++|||||+|||+.++..+++.|++++
T Consensus 114 ~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 114 KVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 192 (247)
T ss_dssp HHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 467788888887665543 22 2467899999999999999999999999999999999999999999999984
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+ |+|||+++|++. .+ ..||++++|++|++++.|+++++.
T Consensus 193 -~-g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 193 -K-GRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp -T-TSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred -C-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 4 899999999986 44 469999999999999999988774
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=1.1e-21 Score=195.94 Aligned_cols=112 Identities=29% Similarity=0.455 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+++.++..++.+. .+|.+|. ...+||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++.
T Consensus 159 ~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 159 EVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 45666777776543 3555654 467899999999999999999999999999999999999999999999986
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+ ++|+|+++|+++ .+. .+|+|++|++|+++..|+++++.+
T Consensus 238 -~-~~Tvi~itH~l~-~~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 238 -A-NRTTIVVAHRLS-TVV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp -T-TSEEEEECCSHH-HHH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred -C-CCEEEEEEcChH-HHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 3 789999999976 455 499999999999999999998875
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=7.9e-22 Score=193.10 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=96.9
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||+ +..++ .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus 106 ~~~~~~l~~~gl~~~~~~~-----~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~-~--- 176 (263)
T 2pjz_A 106 DLFLEMLKALKLGEEILRR-----KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG-K--- 176 (263)
T ss_dssp HHHHHHHHHTTCCGGGGGS-----BGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC-S---
T ss_pred HHHHHHHHHcCCChhHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc-C---
Confidence 3578899999998 77765 456799999999999999999999999999999999999999999999874 2
Q ss_pred EEEEEecCcchHHHhccC-eEEEEeCCeEeEeCChhhHH
Q psy16346 81 TVVVTVHQPSSQIFHMFD-KLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d-~v~ll~~G~~~~~G~~~~~~ 118 (494)
|||+++|++. ++.+.|| ++++|++|++++.|+++++.
T Consensus 177 tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 177 EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 9999999975 6778999 99999999999999998875
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=5.2e-22 Score=192.41 Aligned_cols=113 Identities=27% Similarity=0.393 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCccccccccc------CccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIG------DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg------~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
+++++++.+++.+..++... +..+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~- 186 (243)
T 1mv5_A 108 DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM- 186 (243)
T ss_dssp HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-
T ss_pred HHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-
Confidence 57788899999877654321 12467899999999999999999999999999999999999999999999986
Q ss_pred hcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 77 ~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+ |+|||+++|++. .+ ..+|++++|++|+++..|+++++.+
T Consensus 187 ~-~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 187 K-GRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp T-TSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred C-CCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 4 899999999975 44 4699999999999999999988754
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=1.4e-21 Score=191.16 Aligned_cols=112 Identities=29% Similarity=0.467 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++.+.++.+++.+. .++.++. .+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.
T Consensus 124 ~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 124 EVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 45667777776543 3444443 467899999999999999999999999999999999999999999999985
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+ |+|||+++|++. .+ ..||++++|++|+++..|+++++.+
T Consensus 203 -~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 203 -K-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp -T-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -C-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 899999999986 44 5699999999999999999988754
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=198.60 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=98.2
Q ss_pred hHHHHHHHHcCCcccccccccC------ccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANCQHTIIGD------YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++++++++.++|.+..+...+. ....+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.
T Consensus 123 ~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 123 QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF 202 (390)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 4678899999998877654322 1123499999999999999999999999999999999999999999999864
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|++. ....+||+++|++|+++..|+++++.+
T Consensus 203 --~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 203 --ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp --TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred --CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4799999999963 456799999999999999999998864
No 34
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.5e-21 Score=205.88 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=102.0
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.++++++.+||.+.+++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|.||
T Consensus 447 ~~~~~l~~l~l~~~~~~-----~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tv 521 (608)
T 3j16_B 447 FQTDVVKPLRIDDIIDQ-----EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521 (608)
T ss_dssp HHHHTHHHHTSTTTSSS-----BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 46788999999887775 4678999999999999999999999999999999999999999999999976679999
Q ss_pred EEEecCcchHHHhccCeEEEEeC--CeEeEeCChhhHHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN--GQTAYFGDTNKVVDF 120 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~--G~~~~~G~~~~~~~~ 120 (494)
|+++|++. ++..++||+++|++ |+++..|+|+++.+-
T Consensus 522 iivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 522 FIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp EEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999975 78899999999986 999999999988754
No 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.83 E-value=2.4e-20 Score=202.61 Aligned_cols=113 Identities=26% Similarity=0.414 Sum_probs=99.1
Q ss_pred hHHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
++++++++..|+.+. .||.+|+ ...+||||||||++|||+|+.+|++++|||||+|||+.+...+.+.++++
T Consensus 448 ~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b60_A 448 EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_dssp HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 356778888888654 3566665 46789999999999999999999999999999999999999999999998
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
. + |+|+|+++|+++ . .+.||++++|++|++++.|+++++.+
T Consensus 527 ~-~-~~tvi~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 527 Q-K-NRTSLVIAHRLS-T-IEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp H-T-TSEEEEECSCGG-G-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred h-C-CCEEEEEeccHH-H-HHhCCEEEEEECCEEEEecCHHHHHH
Confidence 6 4 899999999986 3 45799999999999999999998864
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.83 E-value=1.9e-20 Score=203.91 Aligned_cols=113 Identities=32% Similarity=0.524 Sum_probs=97.3
Q ss_pred hHHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
++++++++..|+.+. .||.+|+ ...+||||||||++|||+|+.+|++++|||||++||+.+...+.+.++++
T Consensus 451 ~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 529 (595)
T 2yl4_A 451 EEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529 (595)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 357788888887543 4677765 46789999999999999999999999999999999999999999999998
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
. + |+|+|+++|+++ .+ +.||++++|++|++++.|+++++.+
T Consensus 530 ~-~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 530 M-D-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp H-T-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC---
T ss_pred h-c-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 6 4 799999999975 44 5699999999999999999988754
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=180.65 Aligned_cols=92 Identities=23% Similarity=0.441 Sum_probs=82.5
Q ss_pred ccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHH---HHHHhcCcEEEEEecCcchHHHhccCeE
Q psy16346 24 YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK---RYAEKEGKTVVVTVHQPSSQIFHMFDKL 100 (494)
Q Consensus 24 ~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~---~l~~~~g~tii~~~H~p~~~i~~~~d~v 100 (494)
..+.+||||||||++|||+|+.+|++++|||||+|||+.++..+++.++ ++. .|+|||+++|++. .+ ..||++
T Consensus 123 ~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v 198 (237)
T 2cbz_A 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVI 198 (237)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEE
Confidence 3578999999999999999999999999999999999999999999995 443 4899999999986 34 579999
Q ss_pred EEEeCCeEeEeCChhhHHH
Q psy16346 101 LLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 101 ~ll~~G~~~~~G~~~~~~~ 119 (494)
++|++|+++..|+++++.+
T Consensus 199 ~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 199 IVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEeCCEEEEeCCHHHHhh
Confidence 9999999999999988754
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.82 E-value=2.4e-20 Score=202.65 Aligned_cols=113 Identities=28% Similarity=0.455 Sum_probs=98.6
Q ss_pred hHHHHHHHHcCCcccc-------cccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANCQ-------HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~-------~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l 74 (494)
++++++++..|+.+.. ||.+|+ ...+||||||||++|||+|+.+|++++|||||+|||+.+...+.+.++++
T Consensus 448 ~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 448 EQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 3577888888886543 455665 46789999999999999999999999999999999999999999999998
Q ss_pred HHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 75 ~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
. + |+|+|+++|+++ .+ +.||++++|++|++++.|+++++.+
T Consensus 527 ~-~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 527 Q-K-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred c-C-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 5 4 899999999985 44 5799999999999999999988763
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.82 E-value=1.4e-20 Score=180.78 Aligned_cols=110 Identities=23% Similarity=0.398 Sum_probs=89.7
Q ss_pred HHHHHHHcCCccccc-------ccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHH-HHHHH
Q psy16346 4 VDHIINVLDLANCQH-------TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKRYA 75 (494)
Q Consensus 4 v~~~l~~l~L~~~~~-------~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~-l~~l~ 75 (494)
+++.++.+++.+..+ +.+++ ...+||||||||++|||+|+.+|++++|||||+|||+.++..+.+. ++++.
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 178 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence 345566666654332 22332 3578999999999999999999999999999999999999999997 45654
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
+ |+|||+++|++. .+ ..||++++|++|++++.|+++++.
T Consensus 179 -~-~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 179 -A-NKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp -T-TSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred -C-CCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 3 899999999975 44 469999999999999999988775
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=7.1e-20 Score=198.96 Aligned_cols=111 Identities=26% Similarity=0.473 Sum_probs=95.0
Q ss_pred HHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 4 VDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 4 v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
+.+.++..++.+ -.||.+|+ ...+||||||||++|||||+.+|++++|||||++||+.+...+.+.++++.
T Consensus 449 ~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~- 526 (587)
T 3qf4_A 449 IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT- 526 (587)
T ss_dssp HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-
Confidence 444555555433 34666665 567899999999999999999999999999999999999999999999974
Q ss_pred hcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 77 ~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
+|+|+|+++|+++ . ...+||+++|++|++++.|+++++.+
T Consensus 527 -~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 527 -KGCTTFIITQKIP-T-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp -TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCCEEEEEecChH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4899999999985 3 46899999999999999999998874
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.81 E-value=7.2e-20 Score=198.70 Aligned_cols=112 Identities=28% Similarity=0.424 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCcc-------cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLAN-------CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+.+.++..++.+ -.||.+|+ ...+||||||||++|||+|+.+|++++|||||+|||+.+...+.+.++++.
T Consensus 446 ~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 524 (578)
T 4a82_A 446 EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524 (578)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 3555666666543 34666665 467899999999999999999999999999999999999999999999985
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|+++ .+ +.||++++|++|++++.|+++++.+
T Consensus 525 --~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 525 --KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp --TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred --CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 3789999999986 34 5699999999999999999998864
No 42
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=5.8e-20 Score=199.62 Aligned_cols=112 Identities=26% Similarity=0.357 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+||.+..++ .+.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.||
T Consensus 451 ~~~~~l~~~~l~~~~~~-----~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 525 (607)
T 3bk7_A 451 YKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525 (607)
T ss_dssp HHHHTHHHHTCTTTTTS-----BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 57889999999887775 4567999999999999999999999999999999999999999999999986679999
Q ss_pred EEEecCcchHHHhccCeEEEEeC--CeEeEeCChhhHHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN--GQTAYFGDTNKVVDF 120 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~--G~~~~~G~~~~~~~~ 120 (494)
|+++|++. ++..++||+++|++ |++...|+++++.+-
T Consensus 526 i~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 526 LVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp EEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999975 78889999999986 888899999988753
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=4.5e-20 Score=198.24 Aligned_cols=112 Identities=26% Similarity=0.350 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
+++++++.+|+.+..++ .+..|||||||||.||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|.||
T Consensus 381 ~~~~~l~~~~l~~~~~~-----~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tv 455 (538)
T 1yqt_A 381 YKTELLKPLGIIDLYDR-----EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455 (538)
T ss_dssp HHHHTTTTTTCGGGTTS-----BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 46778889999876665 4567999999999999999999999999999999999999999999999976679999
Q ss_pred EEEecCcchHHHhccCeEEEEeC--CeEeEeCChhhHHHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN--GQTAYFGDTNKVVDF 120 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~--G~~~~~G~~~~~~~~ 120 (494)
|+++|++. ++..+|||+++|++ |+++..|+++++.+.
T Consensus 456 i~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 456 LVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp EEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999965 78899999999986 888999999887753
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=6.1e-20 Score=200.00 Aligned_cols=112 Identities=23% Similarity=0.434 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCccc-------ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANC-------QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+++.++..++.+. .||.+|+ ...+||||||||++|||||+.+|++++|||||++||+.+...+.+.++++.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 460 EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 45555555555432 3455553 357899999999999999999999999999999999999999999999985
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|+++ .+ +.||++++|++|++++.|+++++.+
T Consensus 539 --~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 539 --EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp --TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred --CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 3899999999986 44 4599999999999999999998864
No 45
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.80 E-value=2e-20 Score=177.54 Aligned_cols=98 Identities=16% Similarity=0.293 Sum_probs=84.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++. +. .+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|
T Consensus 113 ~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~t 185 (214)
T 1sgw_A 113 NEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGI 185 (214)
T ss_dssp HHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSE
T ss_pred HHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCE
Confidence 467889999999876 54 4678999999999999999999999999999999999999999999999974 4899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~ 108 (494)
||+++|++. ++...+|+++++ +|+|
T Consensus 186 iiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 186 VIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp EEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred EEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 999999986 677888887755 4444
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.80 E-value=1.2e-19 Score=194.51 Aligned_cols=110 Identities=21% Similarity=0.319 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEE
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 82 (494)
.++++++.+||.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|.||
T Consensus 365 ~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tv 439 (538)
T 3ozx_A 365 FFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439 (538)
T ss_dssp HHHHTTTTTTGGGCTTS-----BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 46778888999877765 4567999999999999999999999999999999999999999999999987779999
Q ss_pred EEEecCcchHHHhccCeEEEEeC--CeEeEeCChhhHH
Q psy16346 83 VVTVHQPSSQIFHMFDKLLLLCN--GQTAYFGDTNKVV 118 (494)
Q Consensus 83 i~~~H~p~~~i~~~~d~v~ll~~--G~~~~~G~~~~~~ 118 (494)
|+++|++. ++..+|||+++|++ |.....|++.++.
T Consensus 440 i~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 440 FIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999975 78899999999986 6677777776554
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.79 E-value=1.2e-19 Score=179.93 Aligned_cols=110 Identities=23% Similarity=0.389 Sum_probs=88.3
Q ss_pred HHHHHHHcCCccccc-------ccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHH-HHHH
Q psy16346 4 VDHIINVLDLANCQH-------TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL-KRYA 75 (494)
Q Consensus 4 v~~~l~~l~L~~~~~-------~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l-~~l~ 75 (494)
+++.++.+++.+..+ +.++. ...+||||||||++||++|+.+|++++|||||+|||+.++..+.+.+ +++.
T Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~ 207 (290)
T 2bbs_A 129 YRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207 (290)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh
Confidence 345566666654322 22332 35789999999999999999999999999999999999999999974 5553
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~ 118 (494)
.|+|||+++|++. .+ ..||++++|++|+++..|+++++.
T Consensus 208 --~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 208 --ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp --TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred --CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 3899999999974 44 569999999999999999998875
No 48
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=6.4e-19 Score=194.51 Aligned_cols=108 Identities=30% Similarity=0.390 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCC---CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNP---ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
++.+.++.+||... .+ ..+.+|||||||||+|||+|+.+| ++++|||||+|||+.++..+++.|++++ +.
T Consensus 522 ~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~-~~ 595 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV-DN 595 (670)
T ss_dssp HHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC
Confidence 45567788888642 23 356789999999999999999887 5999999999999999999999999997 55
Q ss_pred CcEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHH
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVV 118 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~ 118 (494)
|.|||+++|++. . ...|||+++| ++|++++.|+++++.
T Consensus 596 g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 596 GDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp TCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 999999999975 4 4679999999 899999999998875
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=7.8e-19 Score=190.72 Aligned_cols=99 Identities=28% Similarity=0.418 Sum_probs=89.8
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+. +.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|
T Consensus 207 ~~~~~~L~~lgL~~~~~~~-----~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~t 280 (607)
T 3bk7_A 207 GKFEEVVKELELENVLDRE-----LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKA 280 (607)
T ss_dssp SCHHHHHHHTTCTTGGGSB-----GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred HHHHHHHHHcCCCchhCCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCE
Confidence 4688999999998887754 567999999999999999999999999999999999999999999999974 5999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
||+++|++. .+..++|++++|+++.
T Consensus 281 vIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 281 VLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred EEEEecChH-HHHhhCCEEEEECCCc
Confidence 999999965 7788999999998653
No 50
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.77 E-value=1e-18 Score=192.95 Aligned_cols=104 Identities=26% Similarity=0.397 Sum_probs=92.3
Q ss_pred HHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCCC--EeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 7 IINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNPA--LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 7 ~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~--~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
+++.+||.+. .++ .+.+|||||||||+||++|+.+|+ +|+|||||+|||+.++..+++.|++++ +.|.|||
T Consensus 185 ~l~~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~-~~g~tvi 258 (670)
T 3ux8_A 185 FLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLI 258 (670)
T ss_dssp HHHHTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH-HcCCEEE
Confidence 4778888764 454 456799999999999999999998 999999999999999999999999997 5699999
Q ss_pred EEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVV 118 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~ 118 (494)
+++|++. . ...||++++| ++|++++.|+++++.
T Consensus 259 ~vtHd~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 259 VVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp EECCCHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred EEeCCHH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 9999975 4 4569999999 899999999998875
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.77 E-value=7.5e-19 Score=188.73 Aligned_cols=99 Identities=29% Similarity=0.456 Sum_probs=89.6
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..++ .+.+|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++++ .|.|
T Consensus 137 ~~~~~~l~~lgl~~~~~~-----~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~t 210 (538)
T 1yqt_A 137 GKLEEVVKALELENVLER-----EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKS 210 (538)
T ss_dssp SCHHHHHHHTTCTTTTTS-----BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred HHHHHHHHHcCCChhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCE
Confidence 468899999999877775 4567999999999999999999999999999999999999999999999974 6999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
||+++|++. ++..+||++++|++|.
T Consensus 211 vi~vsHd~~-~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 211 VLVVEHDLA-VLDYLSDIIHVVYGEP 235 (538)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred EEEEeCCHH-HHHHhCCEEEEEcCcc
Confidence 999999965 7888999999998653
No 52
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=1.8e-18 Score=194.41 Aligned_cols=110 Identities=28% Similarity=0.419 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCC---CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNP---ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
++.++|+.+||.... +| .....|||||||||.||++|+.+| ++++|||||+|||+.+...+++.|++++ +.|
T Consensus 784 ~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~-~~G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV-DRG 858 (916)
T ss_dssp HHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcC
Confidence 456788888986432 22 356789999999999999999865 7999999999999999999999999997 569
Q ss_pred cEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~~ 119 (494)
.|||+++|++. . ...+|+|++| ++|++++.|+++++.+
T Consensus 859 ~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 859 NTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999999974 4 4669999999 8999999999998863
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.76 E-value=1e-18 Score=205.51 Aligned_cols=112 Identities=30% Similarity=0.465 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCc-------ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLA-------NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
.+.+.++..++. +-.||.||+ ....||||||||++|||||+++|+|++||||||+||+++...|.+.|++..
T Consensus 1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1186 QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 456666666653 346888986 457899999999999999999999999999999999999999999999864
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|.++. ...||||++|++|+++++|+++++++
T Consensus 1265 --~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1265 --EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp --SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred --CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 48999999999864 67899999999999999999999985
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.6e-18 Score=188.02 Aligned_cols=103 Identities=23% Similarity=0.284 Sum_probs=93.1
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+||++..|+. +.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.+++++ +.|+|
T Consensus 200 ~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~-~~g~t 273 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL-APTKY 273 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG-TTTCE
T ss_pred HHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHH-hCCCE
Confidence 4688999999999887754 56799999999999999999999999999999999999999999999997 56999
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeEe
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYF 111 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~~ 111 (494)
||+++|++. ++..++|++++|.+|..+|.
T Consensus 274 vi~vtHdl~-~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 274 VICVEHDLS-VLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEESCTTTEE
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCccccc
Confidence 999999975 78899999999998776553
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.75 E-value=1.8e-18 Score=185.54 Aligned_cols=101 Identities=23% Similarity=0.343 Sum_probs=90.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
++++++++.+|+.+..|+. +.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|
T Consensus 117 ~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~t 189 (538)
T 3ozx_A 117 GKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKY 189 (538)
T ss_dssp SCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSE
T ss_pred HHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCE
Confidence 3678999999998887764 56799999999999999999999999999999999999999999999996 5 899
Q ss_pred EEEEecCcchHHHhccCeEEEEeCCeEeE
Q psy16346 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAY 110 (494)
Q Consensus 82 ii~~~H~p~~~i~~~~d~v~ll~~G~~~~ 110 (494)
||+++|++. ++..+||++++|++|...+
T Consensus 190 ii~vsHdl~-~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 190 VIVVDHDLI-VLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEEEETTTE
T ss_pred EEEEEeChH-HHHhhCCEEEEecCCcccc
Confidence 999999975 8889999999998765443
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.75 E-value=3.6e-18 Score=192.27 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=96.4
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 2 TYVDHIINVLDLA-NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 2 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
++++++++.+||. +..++. +.+||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++ .|.
T Consensus 526 ~~v~~~L~~lgL~~~~~~~~-----~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~ 596 (986)
T 2iw3_A 526 EAIKDKLIEFGFTDEMIAMP-----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGI 596 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHSB-----GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCS
T ss_pred HHHHHHHHHcCCChhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCC
Confidence 4688899999994 556654 567999999999999999999999999999999999999999999987 489
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEe-EeCChhhHHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTA-YFGDTNKVVD 119 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~-~~G~~~~~~~ 119 (494)
|+|+++|++. .+.+.||++++|++|+++ +.|+++++.+
T Consensus 597 tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 597 TSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999964 788999999999999997 7899988764
No 57
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=3.5e-18 Score=152.63 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=73.3
Q ss_pred CccCCCCChHHHHHHHHH------HHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 23 DYMKRGLSGGEKKRANIA------CELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 23 ~~~~~~lSgGerkRv~ia------~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
+..+..||||||||++|| ++++.+|++++|||||+|||+.++..+.+.++++. +.|+|||+++|++ ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiiivsH~~--~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL-KKIPQVILVSHDE--ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTG-GGSSEEEEEESCG--GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHH-ccCCEEEEEEChH--HHHHh
Confidence 345788999999999886 89999999999999999999999999999999986 4589999999997 46789
Q ss_pred cCeEEEEe--CCeE
Q psy16346 97 FDKLLLLC--NGQT 108 (494)
Q Consensus 97 ~d~v~ll~--~G~~ 108 (494)
+|++++|+ +|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 99999994 5643
No 58
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.74 E-value=6.8e-18 Score=198.00 Aligned_cols=111 Identities=30% Similarity=0.480 Sum_probs=94.7
Q ss_pred HHHHHHHcCCc-------ccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 4 VDHIINVLDLA-------NCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 4 v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
+.+.++..++. +-.||.+|+ ....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.+++..
T Consensus 1141 i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~- 1218 (1284)
T 3g5u_A 1141 IVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR- 1218 (1284)
T ss_dssp HHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-
Confidence 44445554443 345777876 467899999999999999999999999999999999999999999998853
Q ss_pred hcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 77 ~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|+++ .+ ..||||++|++|++++.|+++++.+
T Consensus 1219 -~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1219 -EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp -SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred -CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5899999999986 44 5699999999999999999998874
No 59
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=6.6e-18 Score=198.55 Aligned_cols=112 Identities=31% Similarity=0.461 Sum_probs=97.8
Q ss_pred HHHHHHHHcCC-------cccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDL-------ANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L-------~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++.+.++..++ .+-.||.||+ ....||||||||++||||+.++|++++||||||+||+.+...+.+.|+++.
T Consensus 523 ~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 523 EMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 45556655554 3446889997 467899999999999999999999999999999999999999999999986
Q ss_pred HhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 76 ~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.|+|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 602 --~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 602 --KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp --TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred --CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 4899999999986 468899999999999999999998874
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.73 E-value=1.1e-17 Score=187.14 Aligned_cols=108 Identities=30% Similarity=0.389 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCC---CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNP---ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
++.++++.+||.. ..+. .+..|||||||||.||++|+.+| ++++|||||+|||+.++..+++.|++++ +.
T Consensus 824 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~-~~ 897 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV-DN 897 (972)
T ss_dssp HHHHHHHHTTCSSSBTTC-----CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHcCCCcccccC-----chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hC
Confidence 3567899999976 4443 45689999999999999999765 9999999999999999999999999997 56
Q ss_pred CcEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHH
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVV 118 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~ 118 (494)
|.|||+++|++. . ...+|++++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 999999999974 4 4689999999 789999999998875
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.73 E-value=7.1e-18 Score=188.08 Aligned_cols=108 Identities=26% Similarity=0.333 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhC---CCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc
Q psy16346 3 YVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTN---PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~---p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~ 78 (494)
+++++++.+||... .++ .+..|||||||||.||++|+.+ |++++|||||+|||+.+...+.+.|++++ +.
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~-~~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV-DA 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hC
Confidence 46788999999763 333 4678999999999999999996 79999999999999999999999999998 56
Q ss_pred CcEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHH
Q psy16346 79 GKTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVV 118 (494)
Q Consensus 79 g~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~ 118 (494)
|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 999999999974 56 889999999 799999999998765
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.72 E-value=1.6e-17 Score=186.35 Aligned_cols=108 Identities=27% Similarity=0.358 Sum_probs=94.5
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhhCC---CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 4 VDHIINVLDLAN-CQHTIIGDYMKRGLSGGEKKRANIACELLTNP---ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 4 v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
+.++++.+||.. ..+. .+..|||||||||.||++|+.+| ++++|||||+|||+.+...+.+.|++++ +.|
T Consensus 843 ~~~~L~~lgL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~-~~G 916 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQ-----PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLV-DKG 916 (993)
T ss_dssp HHHHHHHTTGGGSBTTC-----CGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHcCCCcccccC-----ccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCC
Confidence 457888999976 3443 46789999999999999999865 9999999999999999999999999997 569
Q ss_pred cEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~~ 119 (494)
.|||+++|++. .+ ..+|++++| ++|++++.|+++++.+
T Consensus 917 ~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 917 NTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp CEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 99999999975 44 789999999 6899999999988764
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.72 E-value=1e-17 Score=188.21 Aligned_cols=108 Identities=24% Similarity=0.395 Sum_probs=93.9
Q ss_pred HHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCCC--EeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 4 VDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNPA--LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 4 v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~--~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
..+.++.+||.+. .++ .+..|||||||||.||++|+++|+ +++|||||+|||+.....+.+.|++++ +.|.
T Consensus 444 ~~~~L~~vgL~~l~l~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~-~~G~ 517 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLR-DLGN 517 (916)
T ss_dssp HHHHHHTTTCTTCBTTS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTT-TTTC
T ss_pred HHHHHHHcCCccccccC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHH-hcCC
Confidence 3456777898754 343 456899999999999999999887 999999999999999999999999997 5699
Q ss_pred EEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHHH
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~~ 119 (494)
|||+++|++. . ...+|++++| ++|++++.|+++++.+
T Consensus 518 TvivVtHd~~-~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 518 TVIVVEHDEE-V-IRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EEEEECCCHH-H-HHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEEEEeCCHH-H-HHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999963 4 4569999999 8999999999998764
No 64
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=1.4e-17 Score=195.33 Aligned_cols=99 Identities=31% Similarity=0.485 Sum_probs=88.8
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHh
Q psy16346 16 CQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH 95 (494)
Q Consensus 16 ~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~ 95 (494)
-.||.+|+ ...+||||||||++|||||+.+|++++||||||+||+.+...+.+.++++. .|+|+|+++|+++ .+ .
T Consensus 515 g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~i-~ 589 (1284)
T 3g5u_A 515 QFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLS-TV-R 589 (1284)
T ss_dssp GGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHH-HH-T
T ss_pred cccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-H
Confidence 45777776 467899999999999999999999999999999999999999999998874 4899999999975 44 5
Q ss_pred ccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 96 MFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 96 ~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
.+|+|++|++|++++.|+++++.+
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHH
T ss_pred cCCEEEEEECCEEEEECCHHHHHh
Confidence 599999999999999999998864
No 65
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.71 E-value=1.3e-17 Score=170.79 Aligned_cols=84 Identities=27% Similarity=0.380 Sum_probs=76.8
Q ss_pred ccCCCCChHHHHHHHHHHHHh------hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhcc
Q psy16346 24 YMKRGLSGGEKKRANIACELL------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMF 97 (494)
Q Consensus 24 ~~~~~lSgGerkRv~ia~~l~------~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~ 97 (494)
..+.+||||||||++||++|+ .+|++++|||||+|||+.++..+++.+++++ +.|.|||+++|++. ..+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~-~~g~tvi~itH~~~--~~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE-RLNKVIVFITHDRE--FSEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG-GSSSEEEEEESCHH--HHTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEecchH--HHHhC
Confidence 356789999999999999999 6999999999999999999999999999997 56999999999974 37889
Q ss_pred CeEEEEeCCeEeE
Q psy16346 98 DKLLLLCNGQTAY 110 (494)
Q Consensus 98 d~v~ll~~G~~~~ 110 (494)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999875
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.70 E-value=3.7e-17 Score=182.85 Aligned_cols=104 Identities=26% Similarity=0.396 Sum_probs=92.0
Q ss_pred HHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCC--CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 7 IINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 7 ~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
.++.+||... .|+ ....||||||||+.||++|..+| ++++|||||+|||+.....+.+.|+++. +.|.|||
T Consensus 487 ~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVI 560 (972)
T 2r6f_A 487 FLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLI 560 (972)
T ss_dssp HHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEE
T ss_pred HhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEE
Confidence 4788899754 453 45679999999999999999985 9999999999999999999999999996 6799999
Q ss_pred EEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVV 118 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~ 118 (494)
+++|++. . .+.+|+|++| ++|++++.|+++++.
T Consensus 561 vVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 561 VVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999973 4 5689999999 799999999998764
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.69 E-value=6e-17 Score=181.70 Aligned_cols=105 Identities=24% Similarity=0.370 Sum_probs=92.3
Q ss_pred HHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhC--CCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEE
Q psy16346 7 IINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTN--PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83 (494)
Q Consensus 7 ~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~--p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii 83 (494)
.++.+||... .|. ....||||||||+.||++|..+ |++++|||||+|||+.....+.+.|+++. +.|.|||
T Consensus 504 ~L~~vGL~~l~l~r-----~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVI 577 (993)
T 2ygr_A 504 FLLDVGLEYLSLSR-----AAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLR-DLGNTLI 577 (993)
T ss_dssp HHHHHTGGGSCTTC-----BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEE
T ss_pred HHhhCCCCccccCC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHH-HcCCEEE
Confidence 4778888754 443 4568999999999999999998 58999999999999999999999999996 6799999
Q ss_pred EEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHHH
Q psy16346 84 VTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVVD 119 (494)
Q Consensus 84 ~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~~ 119 (494)
+++|++. . .+.+|+|++| .+|++++.|+++++.+
T Consensus 578 vVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 578 VVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 9999973 4 5689999999 7999999999988764
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=2e-17 Score=186.26 Aligned_cols=101 Identities=27% Similarity=0.417 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCccc--ccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCc
Q psy16346 3 YVDHIINVLDLANC--QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80 (494)
Q Consensus 3 ~v~~~l~~l~L~~~--~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 80 (494)
+++++++.+||.+. .++ .+++|||||||||.||++|+.+|++|+|||||+|||+.+...+.+.|+++ |.
T Consensus 879 ~i~~~Le~lGL~~~~~~~~-----~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~ 949 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHS-----RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EG 949 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHS-----CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SS
T ss_pred HHHHHHHHcCCCchhhcCC-----CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CC
Confidence 57789999999742 343 45689999999999999999999999999999999999999999888653 56
Q ss_pred EEEEEecCcchHHHhccCeEEEEeCCeEeEeCC
Q psy16346 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113 (494)
Q Consensus 81 tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~ 113 (494)
|||+++|++. .+.++||++++|++|+++..|+
T Consensus 950 tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 950 GVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 9999999964 7788999999999999998875
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.67 E-value=1.1e-16 Score=178.59 Aligned_cols=107 Identities=26% Similarity=0.401 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhhCC--CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Q psy16346 3 YVDHIINVLDLANC-QHTIIGDYMKRGLSGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g 79 (494)
+++ .++.+||.+. .++ ....|||||||||.||++|..+| ++++|||||+|||+.....+.+.++++. +.|
T Consensus 359 rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~-~~G 431 (842)
T 2vf7_A 359 RLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK-RGG 431 (842)
T ss_dssp HHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTT
T ss_pred HHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH-HcC
Confidence 344 5788999764 443 45689999999999999999999 5999999999999999999999999996 679
Q ss_pred cEEEEEecCcchHHHhccCeEEEE------eCCeEeEeCChhhHH
Q psy16346 80 KTVVVTVHQPSSQIFHMFDKLLLL------CNGQTAYFGDTNKVV 118 (494)
Q Consensus 80 ~tii~~~H~p~~~i~~~~d~v~ll------~~G~~~~~G~~~~~~ 118 (494)
.|||+++|++. +.+.+|+|++| .+|++++.|+++++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999973 56789999999 799999999998764
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.63 E-value=1.2e-15 Score=158.62 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHhhCC--CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEE---
Q psy16346 29 LSGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLL--- 103 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll--- 103 (494)
+|||||||+.||++|+.+| ++|+|||||+|||+.++..+.+.|++++ + |.|||++||+| ++.+.+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~--~~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLA--QIAARAHHHYKVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCH--HHHTTCSEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcH--HHHhhcCeEEEEEEe
Confidence 6999999999999999999 9999999999999999999999999996 4 89999999997 456889999999
Q ss_pred -eCCeEeEeC
Q psy16346 104 -CNGQTAYFG 112 (494)
Q Consensus 104 -~~G~~~~~G 112 (494)
.+|+++...
T Consensus 372 ~~~G~~~~~~ 381 (415)
T 4aby_A 372 VEDGRTVSHV 381 (415)
T ss_dssp EETTEEEEEE
T ss_pred ccCCceEEEE
Confidence 899987653
No 71
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.53 E-value=1.6e-14 Score=146.39 Aligned_cols=81 Identities=30% Similarity=0.432 Sum_probs=71.1
Q ss_pred ccCCCCChHHHH------HHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhcc
Q psy16346 24 YMKRGLSGGEKK------RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMF 97 (494)
Q Consensus 24 ~~~~~lSgGerk------Rv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~ 97 (494)
..+..||||||| |+++|++++.+|++++|||||+|||+..+..+.+.|+++. +.|.|||+++|++ ++.+.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~~vi~~sH~~--~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL-KKIPQVILVSHDE--ELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG-GGSSEEEEEESCG--GGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEEChH--HHHHhC
Confidence 346789999999 6677788888999999999999999999999999999986 5588999999995 468999
Q ss_pred CeEEEEe--CCe
Q psy16346 98 DKLLLLC--NGQ 107 (494)
Q Consensus 98 d~v~ll~--~G~ 107 (494)
|+++.|. +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999996 454
No 72
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.53 E-value=2.4e-14 Score=131.03 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=68.2
Q ss_pred CCCCChHHHHHHHHHHHHhh----CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEE
Q psy16346 26 KRGLSGGEKKRANIACELLT----NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLL 101 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~----~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ 101 (494)
+..||||||||++||++++. +|++++|||||+|||+.....+.+.|++++ + +.++|+++|++ .....+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-K-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-c-CCEEEEEEecH--HHHHhCCEEE
Confidence 56799999999999999974 469999999999999999999999999986 3 46889999995 4678999998
Q ss_pred EEe--CCeE
Q psy16346 102 LLC--NGQT 108 (494)
Q Consensus 102 ll~--~G~~ 108 (494)
.+. +|..
T Consensus 138 ~v~~~~g~s 146 (173)
T 3kta_B 138 GVSMRDGVS 146 (173)
T ss_dssp EEEEETTEE
T ss_pred EEEecCCEE
Confidence 764 5643
No 73
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.53 E-value=1.3e-14 Score=155.32 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=71.1
Q ss_pred cCCCC-ChHHHHHHHHHHHHhhCC--CEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEE
Q psy16346 25 MKRGL-SGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLL 101 (494)
Q Consensus 25 ~~~~l-SgGerkRv~ia~~l~~~p--~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ 101 (494)
.+..| |||||||+.||++++.+| ++++|||||+|||+.++..+.+.|++++ + |.|||++||+|. +...+|+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~-~-~~~vi~itH~~~--~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQ--IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH-H-HSEEEEECCCHH--HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHH--HHHhCCEEE
Confidence 45677 999999999999999999 9999999999999999999999999997 4 799999999974 456799999
Q ss_pred EEeCC
Q psy16346 102 LLCNG 106 (494)
Q Consensus 102 ll~~G 106 (494)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
No 74
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.52 E-value=9.3e-15 Score=148.88 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=77.5
Q ss_pred cCccCC-CCChHHHHHHHHHHHHh---------hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy16346 22 GDYMKR-GLSGGEKKRANIACELL---------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91 (494)
Q Consensus 22 g~~~~~-~lSgGerkRv~ia~~l~---------~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~ 91 (494)
++..++ .+|||||||+.||++|+ .+|++++|||||++||+..+..+++.++++. .|+|+++|. .
T Consensus 258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~- 331 (359)
T 2o5v_A 258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-A- 331 (359)
T ss_dssp TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-C-
T ss_pred CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-c-
Confidence 445566 79999999999999999 8999999999999999999999999998752 699999994 4
Q ss_pred HHHhccCeEEEEeCCeEeEeCChhhH
Q psy16346 92 QIFHMFDKLLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 92 ~i~~~~d~v~ll~~G~~~~~G~~~~~ 117 (494)
+ .+|+++++++|+++..|+++++
T Consensus 332 ~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 332 P---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp T---TCSEEEEEETTEEEECCCTTTS
T ss_pred c---cCCEEEEEECCEEEecCCHHHH
Confidence 3 8999999999999999998765
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.51 E-value=3.7e-14 Score=142.72 Aligned_cols=89 Identities=27% Similarity=0.299 Sum_probs=73.3
Q ss_pred cCCCCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeE
Q psy16346 25 MKRGLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKL 100 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v 100 (494)
.+..||||||||++||++|+ .+|++++|||||++||+.....+.+.+++++ + |.++|+++|++ ++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~--~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNK--IVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCT--TGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCH--HHHhhCceE
Confidence 45689999999999999997 5789999999999999999999999999984 3 78999999996 467899986
Q ss_pred --EEEeCCeE-eEeCChhhH
Q psy16346 101 --LLLCNGQT-AYFGDTNKV 117 (494)
Q Consensus 101 --~ll~~G~~-~~~G~~~~~ 117 (494)
+++.+|+. +.....++.
T Consensus 292 ~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEEESSSCEEEEECCC---
T ss_pred EEEEEeCCEEEEEEEEcchh
Confidence 77777654 444454443
No 76
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.5e-15 Score=158.01 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=79.4
Q ss_pred HHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHH--HhhCCCE----eEEeC-CCCCcCHHHHHHHHHHHHHHHHh
Q psy16346 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACE--LLTNPAL----MLLDE-PTSGLDSHAAYSLMSSLKRYAEK 77 (494)
Q Consensus 5 ~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~--l~~~p~~----lllDE-PtsgLD~~~~~~i~~~l~~l~~~ 77 (494)
+++++.+||++..+ ..+||||||||+++|++ |+.+|++ ++||| ||+|||+. ...+.+.+ ++
T Consensus 219 ~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~ 286 (460)
T 2npi_A 219 QPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EK 286 (460)
T ss_dssp CCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HH
T ss_pred HHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HH
Confidence 33445556654433 45799999999999999 9999999 99999 99999999 44444444 34
Q ss_pred cCcEEEEEecCcch-----HHHhccCe-----EEEEe-CCeEeEeCChhhH
Q psy16346 78 EGKTVVVTVHQPSS-----QIFHMFDK-----LLLLC-NGQTAYFGDTNKV 117 (494)
Q Consensus 78 ~g~tii~~~H~p~~-----~i~~~~d~-----v~ll~-~G~~~~~G~~~~~ 117 (494)
.|.|+|+++|++.+ ++.+++|+ +++|+ +|+++ .|+++++
T Consensus 287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 57899999999751 55688999 99999 99999 9998765
No 77
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.42 E-value=4.5e-13 Score=137.42 Aligned_cols=98 Identities=22% Similarity=0.330 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCccc-------ccccccC----ccCCCCChHHHHHH------HHHHHHhhC-CCEeEEeCCCCCcCHHHH
Q psy16346 3 YVDHIINVLDLANC-------QHTIIGD----YMKRGLSGGEKKRA------NIACELLTN-PALMLLDEPTSGLDSHAA 64 (494)
Q Consensus 3 ~v~~~l~~l~L~~~-------~~~~vg~----~~~~~lSgGerkRv------~ia~~l~~~-p~~lllDEPtsgLD~~~~ 64 (494)
.+++.++.+++.+. .+..+.+ .+++.+|||||||+ ++|++++.+ |++++|||||+|||+..+
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 35667777777551 1111211 34568999999988 557888999 999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
..+.+.|+++. + +.+||+++|+|. +...+|++++++
T Consensus 324 ~~l~~~l~~~~-~-~~~vi~~th~~~--~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVK-S-IPQMIIITHHRE--LEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCC-S-CSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred HHHHHHHHHhc-c-CCeEEEEEChHH--HHhhCCEEEEEE
Confidence 99999999874 3 468999999973 578999999997
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.37 E-value=7.3e-13 Score=121.85 Aligned_cols=78 Identities=9% Similarity=-0.034 Sum_probs=65.2
Q ss_pred cCCCCChHHHHHHHHHHH-----HhhCCCEeEEeC--CCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEec--CcchHHHh
Q psy16346 25 MKRGLSGGEKKRANIACE-----LLTNPALMLLDE--PTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH--QPSSQIFH 95 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~-----l~~~p~~lllDE--PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H--~p~~~i~~ 95 (494)
.+..||||||||++||++ ++.+|++++||| ||++||+.....+.+.+++ .+.|+|+++| +....+..
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHH
Confidence 456799999999999996 999999999999 9999999999999888864 4677888987 33557778
Q ss_pred ccCeEEEEeCCeEeE
Q psy16346 96 MFDKLLLLCNGQTAY 110 (494)
Q Consensus 96 ~~d~v~ll~~G~~~~ 110 (494)
++|+ .+|+++.
T Consensus 149 i~~r----~~~~i~~ 159 (178)
T 1ye8_A 149 IRRL----PGAVLIE 159 (178)
T ss_dssp HHTC----TTCEEEE
T ss_pred HHhc----CCcEEEE
Confidence 8887 4566655
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.31 E-value=5.9e-13 Score=121.44 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHH----------------HHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSH----------------AAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~----------------~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
..|||||||++||++++.+|++++|||||+|||+. .+..+.+.+++++++ |.|+|+++|++.
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence 45999999999999999999999999999999999 669999999998754 999999999975
No 80
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.31 E-value=3.9e-12 Score=132.96 Aligned_cols=76 Identities=24% Similarity=0.301 Sum_probs=68.6
Q ss_pred CCCCChHHHHHHHHHHHHh----hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEE
Q psy16346 26 KRGLSGGEKKRANIACELL----TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLL 101 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~----~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ 101 (494)
+..||||||||++||++|+ .+|++++||||+++||+..+..+.+.++++. ..|.++|+++|++ .....+|+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~~~ii~th~~--~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKN--TMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh-cCCCEEEEEECCH--HHHHhCCEEE
Confidence 3459999999999999999 5799999999999999999999999999986 4478999999995 5678899999
Q ss_pred EEe
Q psy16346 102 LLC 104 (494)
Q Consensus 102 ll~ 104 (494)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.10 E-value=3.6e-12 Score=120.12 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 32 GEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 32 GerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
|||||++||++|+.+|++++|||||+| ++..+.+.|+++ + .|+||| ++|++.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 999999999999999999999999999 888899999987 3 489999 999975
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.08 E-value=7.5e-11 Score=126.37 Aligned_cols=81 Identities=16% Similarity=0.038 Sum_probs=73.6
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHH-----HHHHHHHHHHHHHHhcCcEEEEEecCcc---------
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSH-----AAYSLMSSLKRYAEKEGKTVVVTVHQPS--------- 90 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~-----~~~~i~~~l~~l~~~~g~tii~~~H~p~--------- 90 (494)
.+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+.++.++ +.|.|+|+++|++.
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~ 427 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITD 427 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-hCCCEEEEEECcccccCcccccC
Confidence 45789999999999999999999999999 99999999 9999999999986 67999999999971
Q ss_pred hHHHhccCeEEEEeCCe
Q psy16346 91 SQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 91 ~~i~~~~d~v~ll~~G~ 107 (494)
..+..++|++++|.+|+
T Consensus 428 ~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 428 SHISTITDTIILLQYVE 444 (525)
T ss_dssp SCCTTTCSEEEEEEEEE
T ss_pred cccceeeeEEEEEEEEE
Confidence 45678899999999887
No 83
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.97 E-value=4.9e-10 Score=126.64 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=76.2
Q ss_pred cCCCCChHHHHHHHHHHHH--hhCCCEeEEeCCCCCcCHHHHHHH-HHHHHHHHHhcCcEEEEEecCcchHHHhccCeEE
Q psy16346 25 MKRGLSGGEKKRANIACEL--LTNPALMLLDEPTSGLDSHAAYSL-MSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLL 101 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l--~~~p~~lllDEPtsgLD~~~~~~i-~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ 101 (494)
..+++|+|++++..+++.+ +++|+++||||||+|+|+.....+ ...++.++++.|.++|++||++ ++.+++|++.
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~ 795 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP 795 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence 4568999999999999999 899999999999999999999888 6777888754699999999994 5678999999
Q ss_pred EEeCCeEeEeCChhhH
Q psy16346 102 LLCNGQTAYFGDTNKV 117 (494)
Q Consensus 102 ll~~G~~~~~G~~~~~ 117 (494)
.+.+|++...++.+++
T Consensus 796 ~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 796 TVNNLHVTALTTEETL 811 (934)
T ss_dssp TEEEEEEEEEEETTEE
T ss_pred eeEeeEEEEEecCCcE
Confidence 9999999988876553
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.91 E-value=5.5e-11 Score=123.02 Aligned_cols=93 Identities=10% Similarity=0.113 Sum_probs=75.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChH--HHHHHHHHHHHhh----------CCCEeEEeCCCCCcCHHHHHHHHH
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGG--EKKRANIACELLT----------NPALMLLDEPTSGLDSHAAYSLMS 69 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG--erkRv~ia~~l~~----------~p~~lllDEPtsgLD~~~~~~i~~ 69 (494)
++++++++.+++.+.... .. +||| ||||+.||++|+. +|+++++||||+|||+..+.++.+
T Consensus 135 ~~~~~~L~~~~L~~~~~~------~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFF------II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGCSEE------EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccCCe------EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 357889999998765321 22 8999 9999999999999 999999999999999999999999
Q ss_pred HHHHHHH----hc----CcEEEEEecCcch-HHHhccCeEE
Q psy16346 70 SLKRYAE----KE----GKTVVVTVHQPSS-QIFHMFDKLL 101 (494)
Q Consensus 70 ~l~~l~~----~~----g~tii~~~H~p~~-~i~~~~d~v~ 101 (494)
.++++.+ +. ..+|++++|+... ++.+++|++.
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999852 22 3678899998653 3667777764
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.85 E-value=4.8e-09 Score=103.65 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=64.3
Q ss_pred CCCChHH-HHHHHHHHHHhhCCCEeEEeCCCC---C---cCH-HHHHHHHHHHHHHHHhcCcEEEEEecCcc-h------
Q psy16346 27 RGLSGGE-KKRANIACELLTNPALMLLDEPTS---G---LDS-HAAYSLMSSLKRYAEKEGKTVVVTVHQPS-S------ 91 (494)
Q Consensus 27 ~~lSgGe-rkRv~ia~~l~~~p~~lllDEPts---g---LD~-~~~~~i~~~l~~l~~~~g~tii~~~H~p~-~------ 91 (494)
.++|.+| +||+. ++++..+|+++++||||+ + +|. .....+++.|++++++.|.|||+++|+.. .
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE 206 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence 4689999 66676 999999999999999999 5 555 67788999999999778999999999962 2
Q ss_pred --------------HHHhccCeEEEEeCCeE
Q psy16346 92 --------------QIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 92 --------------~i~~~~d~v~ll~~G~~ 108 (494)
.+.+.+|++++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998874
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.66 E-value=4.2e-08 Score=92.38 Aligned_cols=79 Identities=16% Similarity=0.089 Sum_probs=66.6
Q ss_pred CCChHHHHHHHHHHHHhhCCC--EeEEeCCCCCc--CHHHHHHHHHHHHHHHHhcCcEEEEEecCcc-------hHHHhc
Q psy16346 28 GLSGGEKKRANIACELLTNPA--LMLLDEPTSGL--DSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS-------SQIFHM 96 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~--~lllDEPtsgL--D~~~~~~i~~~l~~l~~~~g~tii~~~H~p~-------~~i~~~ 96 (494)
..|.+|+++...+.....+|+ ++++||||+++ |+....++++.|++++++.|.|||+++|+.. ..+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 458999988887777778999 99999999887 9999999999999998778999999999972 347889
Q ss_pred cCeEEEEeCC
Q psy16346 97 FDKLLLLCNG 106 (494)
Q Consensus 97 ~d~v~ll~~G 106 (494)
+|++++|++.
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
No 87
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.63 E-value=2.5e-08 Score=112.52 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=65.9
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE-E
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLM-SSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL-L 103 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l-l 103 (494)
...+|+|++|++.|+++ +++|+++||||||+|||+.....+. ..++.++++.|.|+|++||++ ++.+++|+.-- +
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v 809 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV 809 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence 45688999999999998 8999999999999999999999998 788888755699999999996 45667776431 3
Q ss_pred eCCeEeE
Q psy16346 104 CNGQTAY 110 (494)
Q Consensus 104 ~~G~~~~ 110 (494)
.++++.+
T Consensus 810 ~n~~~~~ 816 (918)
T 3thx_B 810 GNYHMGF 816 (918)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 3444443
No 88
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.61 E-value=7e-10 Score=110.20 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
...|||||||| ||+++.+|++|+ |++||+.+...+.. .+|++. ..+.+|++ +|++
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~ 252 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDES 252 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC-
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeC
Confidence 35799999999 999999999999 99999999888752 178865 36789999 9999
Q ss_pred CeEeEeCChhhHHHHHHh
Q psy16346 106 GQTAYFGDTNKVVDFFHN 123 (494)
Q Consensus 106 G~~~~~G~~~~~~~~f~~ 123 (494)
|++++.|+++++...|..
T Consensus 253 G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 253 GEQPFNITDADWKSFFVR 270 (305)
T ss_dssp --CCCCCCHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHHHHH
Confidence 999999999988555543
No 89
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.59 E-value=6.3e-08 Score=94.82 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=62.1
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCC--CcCHHH---HHHHHHHHHHHHHhc
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTS--GLDSHA---AYSLMSSLKRYAEKE 78 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPts--gLD~~~---~~~i~~~l~~l~~~~ 78 (494)
.+++++.+++.+..+ ..+..+|+||++++ ++++.+|+++++||||+ ++|... ..++++.|++++++.
T Consensus 99 ~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 99 RQAVADGLLIQPLIG-----SLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp HHHHHHHEEECCCTT-----SCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCceEEeecCC-----CCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 344566777665544 24677999998875 68888999999999999 999744 488999999998778
Q ss_pred CcEEEEEecCcc
Q psy16346 79 GKTVVVTVHQPS 90 (494)
Q Consensus 79 g~tii~~~H~p~ 90 (494)
|.|||+++|+..
T Consensus 171 g~tvi~i~H~~~ 182 (279)
T 1nlf_A 171 GCSIVFLHHASK 182 (279)
T ss_dssp CCEEEEEEEC--
T ss_pred CCEEEEEecCCC
Confidence 999999999964
No 90
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.58 E-value=7.4e-09 Score=104.29 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeE
Q psy16346 31 GGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAY 110 (494)
Q Consensus 31 gGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~ 110 (494)
|||+||++|+++|..+|+++++||||+. ++.+.++.+. ..+.|+++|+|.++ ..+.+||+++|.+|+...
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~~~ 294 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHAGS--SEEAFIRLANMSSSNSAA 294 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEECSS--HHHHHHHHHHHHHTSGGG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcccH--HHHHhhhheehhcCCccc
Confidence 8999999999999999999999999982 3567777765 44558999999975 678899999999886543
Q ss_pred eCCh
Q psy16346 111 FGDT 114 (494)
Q Consensus 111 ~G~~ 114 (494)
.+-+
T Consensus 295 ~~~~ 298 (330)
T 2pt7_A 295 RNIK 298 (330)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 3333
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.57 E-value=8.2e-08 Score=109.78 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=66.1
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHH-HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA-YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~-~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
.+|+|++ +++++++++++|+++|||||++|+|+... ..+.+.+++++++.|.++|++||++. .+...+|++.++ +|
T Consensus 851 tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 851 TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LG 927 (1022)
T ss_dssp HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EE
T ss_pred hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cC
Confidence 3555555 59999999999999999999999999985 55788999997545899999999964 667789999887 58
Q ss_pred eEe--EeCChhh
Q psy16346 107 QTA--YFGDTNK 116 (494)
Q Consensus 107 ~~~--~~G~~~~ 116 (494)
++. +.|++++
T Consensus 928 ~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 928 HMACMVENECED 939 (1022)
T ss_dssp EEEEC-------
T ss_pred eEEEEEecCccc
Confidence 887 5566544
No 92
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.54 E-value=5.7e-10 Score=104.58 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=55.2
Q ss_pred HHhhCCCEeEEeCCCCCc----CHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 42 ELLTNPALMLLDEPTSGL----DSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 42 ~l~~~p~~lllDEPtsgL----D~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
+|+.+|++++|||||+|+ |+..+.++.+.++++.++.|.|+++++|++. ++..++|++++|.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 788999999999999998 7889999999999998667999999999975 8999999999985
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.39 E-value=2.7e-07 Score=87.94 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHhhCCCEeEEeCCCCCcC-----HHHHHHHHHHHHHHHHhcCcEEEEEecCcchHH---------Hh
Q psy16346 30 SGGEKKRANIACELLTNPALMLLDEPTSGLD-----SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQI---------FH 95 (494)
Q Consensus 30 SgGerkRv~ia~~l~~~p~~lllDEPtsgLD-----~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i---------~~ 95 (494)
+.+++.+......-..+|+++++||||+++| +..+..+.+.++.++ +.|+|||+++|++. +. ..
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~-~~g~tii~vtH~~~-~~~~~~~~~~i~~ 196 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL-EMGVTTILTTEAPD-PQHGKLSRYGIEE 196 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH-HHCCEEEEEECCC-----CCSSSSSCGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH-HCCCeEEEEECCCC-CCcccccccChhh
Confidence 3444444444444458999999999999998 677777999999886 56999999999975 44 57
Q ss_pred cc-CeEEEEe
Q psy16346 96 MF-DKLLLLC 104 (494)
Q Consensus 96 ~~-d~v~ll~ 104 (494)
++ |++++|+
T Consensus 197 ~~aD~vi~l~ 206 (251)
T 2ehv_A 197 FIARGVIVLD 206 (251)
T ss_dssp GGCSEEEEEE
T ss_pred EeeeEEEEEe
Confidence 88 9999996
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.39 E-value=6.3e-07 Score=83.67 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=63.2
Q ss_pred CCChHH--HHHHHHHHHHhhC-CCEeEEeCCCCCcCHH--------HHHHHHHHHHHHHHhcCcEEEEEecCcch-----
Q psy16346 28 GLSGGE--KKRANIACELLTN-PALMLLDEPTSGLDSH--------AAYSLMSSLKRYAEKEGKTVVVTVHQPSS----- 91 (494)
Q Consensus 28 ~lSgGe--rkRv~ia~~l~~~-p~~lllDEPtsgLD~~--------~~~~i~~~l~~l~~~~g~tii~~~H~p~~----- 91 (494)
..++++ ++++..+++++.+ |+++++||||+++|+. ...++++.|++++++.|.|+|+++|....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 445554 5678888899976 9999999999999973 33567777999987789999999998642
Q ss_pred -------HHHhccCeEEEEeCC
Q psy16346 92 -------QIFHMFDKLLLLCNG 106 (494)
Q Consensus 92 -------~i~~~~d~v~ll~~G 106 (494)
.+.+.+|++++|++.
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467889999999754
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.28 E-value=6.3e-07 Score=84.26 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCcccccccccC-ccCCCCChHHHH-HHHHHHHHhh-------CCCEeEEeCCCCCcCHH-------H---
Q psy16346 3 YVDHIINVLDLANCQHTIIGD-YMKRGLSGGEKK-RANIACELLT-------NPALMLLDEPTSGLDSH-------A--- 63 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~-~~~~~lSgGerk-Rv~ia~~l~~-------~p~~lllDEPtsgLD~~-------~--- 63 (494)
++..+.+.+++... +...+ ......++++++ ++..+.+++. +|+++++|||++++|+. .
T Consensus 75 ~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~ 152 (231)
T 4a74_A 75 RIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ 152 (231)
T ss_dssp HHHHHHHHTTSCHH--HHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHHcCCCHH--HHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHH
Confidence 34556666666431 11111 112344555544 4677777776 99999999999999983 1
Q ss_pred --HHHHHHHHHHHHHhcCcEEEEEecCcc---hHHHhccCeEEEEeCCe
Q psy16346 64 --AYSLMSSLKRYAEKEGKTVVVTVHQPS---SQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 64 --~~~i~~~l~~l~~~~g~tii~~~H~p~---~~i~~~~d~v~ll~~G~ 107 (494)
..++++.+++++++.|.|||+++|... ..+...+|+++.|++|+
T Consensus 153 ~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 153 QKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 247888898888778999999999532 14778899999998753
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.25 E-value=2.3e-07 Score=92.15 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHHHHHHhhCCC--EeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc--------hHHHh
Q psy16346 26 KRGLSGGEKKRANIACELLTNPA--LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS--------SQIFH 95 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~--~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~--------~~i~~ 95 (494)
+.+|| |||+.||++++.+|+ +++|| ||+|||+... ++++.++.|.|+|++||... +....
T Consensus 202 ~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~ 271 (302)
T 3b9q_A 202 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEE 271 (302)
T ss_dssp HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHH
Confidence 45688 999999999999999 99999 9999998855 34555456899999999422 12334
Q ss_pred ccCeEEEEeCCeE
Q psy16346 96 MFDKLLLLCNGQT 108 (494)
Q Consensus 96 ~~d~v~ll~~G~~ 108 (494)
..+.|..+..|+.
T Consensus 272 ~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 272 LGIPVKFIGVGEA 284 (302)
T ss_dssp HCCCEEEEECSSS
T ss_pred HCCCEEEEeCCCC
Confidence 4567777777755
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.23 E-value=8.5e-07 Score=89.85 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHh-------hCCCEeEEeCCCCCcCHHH------------HHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 30 SGGEKKRANIACELL-------TNPALMLLDEPTSGLDSHA------------AYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 30 SgGerkRv~ia~~l~-------~~p~~lllDEPtsgLD~~~------------~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
|.++++++.++++++ .+|+++++||||+++|+.. ..++++.|++++++.|.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 688999999999999 6899999999999999852 467778888888778999999999854
Q ss_pred hHHHhccCeEEEEeCCeEeEeCC
Q psy16346 91 SQIFHMFDKLLLLCNGQTAYFGD 113 (494)
Q Consensus 91 ~~i~~~~d~v~ll~~G~~~~~G~ 113 (494)
..-..+++...+.+|+++.++.
T Consensus 288 -~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 288 -RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ---------------CCCCCTTC
T ss_pred -ccccccCCccccCCcceEeecC
Confidence 4444455566666777665554
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.21 E-value=7.2e-07 Score=99.06 Aligned_cols=66 Identities=26% Similarity=0.219 Sum_probs=54.3
Q ss_pred CCCCChHHHHHHHHHHHH--hhCCCEeEEeCC---CCCcCHHHH-HHHHHHHHHHHHhcCcEEEEEecCcchHHHhcc
Q psy16346 26 KRGLSGGEKKRANIACEL--LTNPALMLLDEP---TSGLDSHAA-YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMF 97 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l--~~~p~~lllDEP---tsgLD~~~~-~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~ 97 (494)
..++|+|+++++.+++++ +++|++++|||| |++||..+. ..+++.+++ .|.++|++||++ +..+++
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 457899999999999999 999999999999 999998875 567777765 489999999995 344554
No 99
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.17 E-value=7.1e-07 Score=99.61 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=63.7
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHH-HHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL-MSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i-~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
.+|+|++ ++..+...+++|++++||||++|+|+.....+ ...+++++++.|.++|++||++ ++.+++|++..+.+|
T Consensus 669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEE
T ss_pred hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEE
Confidence 3555554 45555567899999999999999999888776 6888888743589999999996 346789988777788
Q ss_pred eEeEeC
Q psy16346 107 QTAYFG 112 (494)
Q Consensus 107 ~~~~~G 112 (494)
++.+..
T Consensus 746 ~~~~~~ 751 (800)
T 1wb9_A 746 HLDALE 751 (800)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776654
No 100
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.09 E-value=6.7e-07 Score=90.73 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCCCChHHHHHHHHHHHHhhCCC--EeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc--------hHHHh
Q psy16346 26 KRGLSGGEKKRANIACELLTNPA--LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS--------SQIFH 95 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~--~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~--------~~i~~ 95 (494)
+.+|| |||+.||++++.+|+ +++|| ||+|||+.... +++.++.|.|+|++||... +....
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~ 328 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEE 328 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHH
Confidence 45688 999999999999999 99999 99999988653 4555456899999999421 12334
Q ss_pred ccCeEEEEeCCeE
Q psy16346 96 MFDKLLLLCNGQT 108 (494)
Q Consensus 96 ~~d~v~ll~~G~~ 108 (494)
..+.|..+..|+.
T Consensus 329 ~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 329 LGIPVKFIGVGEA 341 (359)
T ss_dssp HCCCEEEEECSSS
T ss_pred hCCCEEEEeCCCC
Confidence 4556777766654
No 101
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.09 E-value=1.9e-07 Score=94.55 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=69.0
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH-hcCc-----EEEEEecCcchHHHhccCe
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE-KEGK-----TVVVTVHQPSSQIFHMFDK 99 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~-~~g~-----tii~~~H~p~~~i~~~~d~ 99 (494)
+..+|+|| ||+++| +.+|++ |+|+|+.....+.+.++++.+ +.|. ||++++|+.. ..++|+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 55789999 899999 678876 999999999999999999864 4587 9999999976 467999
Q ss_pred EEEEeCCeEeEeCChhhH
Q psy16346 100 LLLLCNGQTAYFGDTNKV 117 (494)
Q Consensus 100 v~ll~~G~~~~~G~~~~~ 117 (494)
+.++.+|+++..|+.++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHCSEEEEBCHHHHTT
T ss_pred eEEeeCcEEEEeCCHHHc
Confidence 999999999999887665
No 102
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.05 E-value=2e-07 Score=97.31 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH---hcCc-----EEEEEecCcchHHHhcc
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE---KEGK-----TVVVTVHQPSSQIFHMF 97 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~---~~g~-----tii~~~H~p~~~i~~~~ 97 (494)
...+|+|| ||++|| +.+|++ |+|||+.....+.+.++++.+ +.|+ ||++++|+.+ ...+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 45689999 999999 888887 999999999999999999874 2375 9999999986 5679
Q ss_pred CeEEEEeCCeEeEeCChhhHH
Q psy16346 98 DKLLLLCNGQTAYFGDTNKVV 118 (494)
Q Consensus 98 d~v~ll~~G~~~~~G~~~~~~ 118 (494)
|++++|.+|+++..|++++..
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHTT
T ss_pred ceEEEEeCcEEEEeCCHHHcc
Confidence 999999999999999876543
No 103
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.99 E-value=3e-08 Score=93.68 Aligned_cols=50 Identities=6% Similarity=0.086 Sum_probs=45.7
Q ss_pred CCCChHHHHHHHH-----HHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 27 RGLSGGEKKRANI-----ACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 27 ~~lSgGerkRv~i-----a~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
.++|||||||+++ +++++.+|++++|||||+++|..+...+.+.+++..+
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4689999999999 8899999999999999999999999999999988753
No 104
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.93 E-value=9.2e-07 Score=86.35 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=46.3
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
..+||||||||+.+||+++. ++++|||++|||+.. .+.++++. +. .++|+++|.-
T Consensus 96 ~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~-~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 96 KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS-KV-VNIIPVIAKA 150 (270)
T ss_dssp HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH-TT-SEEEEEETTG
T ss_pred HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH-hc-CcEEEEEecc
Confidence 45799999999999999775 999999999999987 56666665 44 8999999873
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.87 E-value=2.5e-05 Score=83.32 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=59.1
Q ss_pred HHHHHHHHHh-hCCCEeEEeCCCC-----CcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH--------HHhccCeE
Q psy16346 35 KRANIACELL-TNPALMLLDEPTS-----GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ--------IFHMFDKL 100 (494)
Q Consensus 35 kRv~ia~~l~-~~p~~lllDEPts-----gLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~--------i~~~~d~v 100 (494)
+.-.+..+|. .+|+++++||||+ +||+..+..+.+.+++++ +.|+|||+++|++... ...++|++
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~-~~g~tvl~itH~~~~~~~~~~~~i~~~laD~v 204 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK-QIGATTVMTTERIEEYGPIARYGVEEFVSDNV 204 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHH-HCCCEEEEEecCCCCccccccccceeeeeeEE
Confidence 3445566664 6899999999998 569999999999999997 4699999999998632 34559999
Q ss_pred EEEeCCeE
Q psy16346 101 LLLCNGQT 108 (494)
Q Consensus 101 ~ll~~G~~ 108 (494)
++|++|+.
T Consensus 205 i~L~~~~~ 212 (525)
T 1tf7_A 205 VILRNVLE 212 (525)
T ss_dssp EEEEEECS
T ss_pred EEEEEEcc
Confidence 99998553
No 106
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.87 E-value=7e-06 Score=79.64 Aligned_cols=60 Identities=15% Similarity=0.304 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 36 RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 36 Rv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
|++|+++|..+|+++++|||| |+.+...++ +. + +.|.+|++++|+++ ..+.+||++.|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~-~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-A-ETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-H-HTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-H-ccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 888866543 33 3 45899999999965 5788999988854
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.75 E-value=6.3e-08 Score=90.40 Aligned_cols=83 Identities=14% Similarity=0.042 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHH----HHHHHHHHHhhCCCEeEEeCCCCC-------cCHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEK----KRANIACELLTNPALMLLDEPTSG-------LDSHAAYSLMSSL 71 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGer----kRv~ia~~l~~~p~~lllDEPtsg-------LD~~~~~~i~~~l 71 (494)
++.+.++.+++.+..+. +...+|+||| ||+.++++++.+|+++++||||++ ||+.....+.+.+
T Consensus 69 ~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l 143 (211)
T 3asz_A 69 LYLEHAQALLRGLPVEM-----PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRL 143 (211)
T ss_dssp HHHHHHHHHHTTCCEEE-----CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCC-----CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHH
Confidence 46677777777655443 3456888864 688999999999999999999999 9999999999999
Q ss_pred HHHHHhcCcEEEEEecCcc
Q psy16346 72 KRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 72 ~~l~~~~g~tii~~~H~p~ 90 (494)
++..++.|+|++.++|+..
T Consensus 144 ~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 144 KRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 8865567999999999743
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.75 E-value=1.5e-06 Score=80.30 Aligned_cols=79 Identities=8% Similarity=0.023 Sum_probs=54.9
Q ss_pred CCCCChHHHHHHHH-HH---HHhhCCCEeEEeC--CCCCcCHHHHHHHHHHHHHHHHhcCcEEEE---E-ecCcchHHHh
Q psy16346 26 KRGLSGGEKKRANI-AC---ELLTNPALMLLDE--PTSGLDSHAAYSLMSSLKRYAEKEGKTVVV---T-VHQPSSQIFH 95 (494)
Q Consensus 26 ~~~lSgGerkRv~i-a~---~l~~~p~~lllDE--PtsgLD~~~~~~i~~~l~~l~~~~g~tii~---~-~H~p~~~i~~ 95 (494)
...+|+|||+++.. .+ |+..+|+++++|| |+..+|......+.+.++ . ..++|+ + +|+.+ ..
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~---~~ 152 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP---LA 152 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC---CT
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc---hH
Confidence 44689999988843 43 5789999999999 899999876555544443 2 344453 2 28753 34
Q ss_pred ccCeEEEEeCCeEeEeC
Q psy16346 96 MFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 96 ~~d~v~ll~~G~~~~~G 112 (494)
+.|++..+.+|+++...
T Consensus 153 ~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 153 LVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp THHHHHTTCCSEEEECC
T ss_pred HHHHHeecCCcEEEEeC
Confidence 67777777888887643
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.62 E-value=1.8e-05 Score=80.17 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=47.6
Q ss_pred HHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 38 NIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 38 ~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
.|+++|..+|+++++|||| |..+ .+.+.+.+ +.|.++++|+|+++ .+ +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~-~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAA-ETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHH-HTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHH-hcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 9999999999999999999 6555 34444445 56999999999976 34 889999988654
No 110
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.61 E-value=1.6e-06 Score=86.44 Aligned_cols=53 Identities=8% Similarity=0.028 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCH
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDS 61 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~ 61 (494)
++.+.++.++ .+..+. .+..+||||+||+.+|++++.+|+++|+|||+..+|+
T Consensus 157 ~~~~~L~~l~-~~~~~~-----~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 157 ALMRFVTSVK-SGSDYA-----CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHH-TTCSCE-----EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHhC-CCcccC-----CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 4667777777 444433 3457999999999999999999999999999999986
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.60 E-value=3.4e-05 Score=69.86 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=43.3
Q ss_pred HHhhCCCEeEEeCCCC-CcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH
Q psy16346 42 ELLTNPALMLLDEPTS-GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ 92 (494)
Q Consensus 42 ~l~~~p~~lllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~ 92 (494)
..+.+|+++++|||++ ++|+..+..+.+.+.+.. +.|+++|+++|.+..+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChhH
Confidence 4456999999999985 999999999999998876 5689999999998754
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=0.00012 Score=68.94 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=52.0
Q ss_pred CCChHHHHH-HHHHHHHh--hCCCEeEEeCCCCCcCHH-------H-----HHHHHHHHHHHHHhcCcEEEEEecCcchH
Q psy16346 28 GLSGGEKKR-ANIACELL--TNPALMLLDEPTSGLDSH-------A-----AYSLMSSLKRYAEKEGKTVVVTVHQPSSQ 92 (494)
Q Consensus 28 ~lSgGerkR-v~ia~~l~--~~p~~lllDEPtsgLD~~-------~-----~~~i~~~l~~l~~~~g~tii~~~H~p~~~ 92 (494)
..++.+..+ +.-..+++ .+|+++++|||++.+|+. . ...+++.+++++++.|.|||+++|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 456665443 33344444 489999999999999975 2 45677778888877899999999964321
Q ss_pred ------------------HHhccCeEEEEeCC
Q psy16346 93 ------------------IFHMFDKLLLLCNG 106 (494)
Q Consensus 93 ------------------i~~~~d~v~ll~~G 106 (494)
+...+|++++|++|
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------------------CCTTCEEEEEEEC
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 22378999999865
No 113
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.55 E-value=5.7e-05 Score=69.63 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=47.5
Q ss_pred cCCCCChHHHHH-HHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE
Q psy16346 25 MKRGLSGGEKKR-ANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81 (494)
Q Consensus 25 ~~~~lSgGerkR-v~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 81 (494)
+...+|+||||| +..+++++.+|+.+++|||||++|.....++.+.|.++. ..|.|
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~-~~~~~ 202 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF-SEMQP 202 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH-C----
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH-hhccc
Confidence 355789999999 899999999999999999999999999999999999986 33543
No 114
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.37 E-value=7.6e-06 Score=81.06 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=46.7
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCC-CcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTS-GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
..+++|||||||+.+|++++ ++++||||+ |||+... +.++++.++.+.++|++.||..
T Consensus 110 ~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 110 YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 45679999999988888774 999999998 5999873 5666665445789999999964
No 115
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.11 E-value=0.00076 Score=69.25 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=51.1
Q ss_pred HHHHHHHHHHh--hCCCEeEEeCCCCCcCHHHH------------HHHHHHHHHHHHhcCcEEEEEecCcc---------
Q psy16346 34 KKRANIACELL--TNPALMLLDEPTSGLDSHAA------------YSLMSSLKRYAEKEGKTVVVTVHQPS--------- 90 (494)
Q Consensus 34 rkRv~ia~~l~--~~p~~lllDEPtsgLD~~~~------------~~i~~~l~~l~~~~g~tii~~~H~p~--------- 90 (494)
++.+.-+.+++ .+|+++++|||++.+|+... .++++.|++++++.|.|||+++|...
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 33444444443 46999999999999986433 67889999999888999999999821
Q ss_pred ---------hHHHhccCeEEEEeCC
Q psy16346 91 ---------SQIFHMFDKLLLLCNG 106 (494)
Q Consensus 91 ---------~~i~~~~d~v~ll~~G 106 (494)
..+.+.+|.++.|.+|
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ---------CHHHHHCSEEEEEEEC
T ss_pred CCCccCCchhHHHHhcceEEEEEec
Confidence 1245567777777655
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.11 E-value=2.5e-06 Score=77.98 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHH------HHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecC-cchHHHhccCeEEE
Q psy16346 30 SGGEKKRANIAC------ELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ-PSSQIFHMFDKLLL 102 (494)
Q Consensus 30 SgGerkRv~ia~------~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~-p~~~i~~~~d~v~l 102 (494)
|+|+++++.++. ++..+|+...+|| |+|+..... .+.++.+. +.+.++|.++|+ +. ++.+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~-~~e~~~~~i~- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPT-NLNDIVKNLK- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGG-GHHHHHHHHH-
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChh-hHHHHHHHHh-
Confidence 788888887777 8888888888884 899988888 88888875 557899999998 75 6788999998
Q ss_pred EeCCeEeEeCChhhHH
Q psy16346 103 LCNGQTAYFGDTNKVV 118 (494)
Q Consensus 103 l~~G~~~~~G~~~~~~ 118 (494)
++|+++..|+++-+.
T Consensus 169 -~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 169 -TNPRFIFCMAGDPLE 183 (189)
T ss_dssp -HCGGGSCC-------
T ss_pred -hCCcEEEeecCCchh
Confidence 999999999986543
No 117
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.02 E-value=0.0019 Score=67.34 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHHHHHh--hCCCEeEEeCCCCCcC--------HHHHHHHHHHHHHHHHhcCcEEEEEec---------
Q psy16346 27 RGLSGGEKKRANIACELL--TNPALMLLDEPTSGLD--------SHAAYSLMSSLKRYAEKEGKTVVVTVH--------- 87 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~--~~p~~lllDEPtsgLD--------~~~~~~i~~~l~~l~~~~g~tii~~~H--------- 87 (494)
.++|.+|.+ +.++.+. .+|+++++|+++...+ ......+.+.|+++|++.|.+||+++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 468999987 5667776 6899999999998773 334578889999999888999999999
Q ss_pred C--cc-------hHHHhccCeEEEEeCCeE
Q psy16346 88 Q--PS-------SQIFHMFDKLLLLCNGQT 108 (494)
Q Consensus 88 ~--p~-------~~i~~~~d~v~ll~~G~~ 108 (494)
+ |. ..+.+.+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 42 146778999999986653
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.01 E-value=0.00028 Score=62.18 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=39.2
Q ss_pred HHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcE-EEEEecCcchH
Q psy16346 42 ELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT-VVVTVHQPSSQ 92 (494)
Q Consensus 42 ~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t-ii~~~H~p~~~ 92 (494)
+++.+|+++++|||++ +|...+..+.+.+.++. +.|++ +|+++|.+.++
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~-~~g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFR-NSGKGFLLLGSEYTPQQ 128 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHH-HHTCCEEEEEESSCTTT
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHH-HcCCcEEEEECCCCHHH
Confidence 4567899999999998 65555888999999886 55787 89999976543
No 119
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.99 E-value=4.6e-05 Score=72.79 Aligned_cols=76 Identities=7% Similarity=0.081 Sum_probs=52.1
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHh-ccCeEEEE
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH-MFDKLLLL 103 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~-~~d~v~ll 103 (494)
...++|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.+|++++|+.. .+.+ +++++
T Consensus 113 ~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~~-~~~r~~~r~~--- 176 (245)
T 2jeo_A 113 EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSDV-RLSRRVLRDV--- 176 (245)
T ss_dssp EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHHH-HHHHHHHHHT---
T ss_pred ecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCHHH-HHHHHHHHHH---
Confidence 456799999999987 5778899999999998888764 2222 3789999999743 4433 34434
Q ss_pred eCCeEeEeCChhhHHHHH
Q psy16346 104 CNGQTAYFGDTNKVVDFF 121 (494)
Q Consensus 104 ~~G~~~~~G~~~~~~~~f 121 (494)
++|+ +.+++.+.+
T Consensus 177 ~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 177 RRGR-----DLEQILTQY 189 (245)
T ss_dssp C--------CHHHHHHHH
T ss_pred HcCC-----CHHHHHHHH
Confidence 5664 456666543
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.0012 Score=65.86 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=38.8
Q ss_pred hhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy16346 44 LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91 (494)
Q Consensus 44 ~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~ 91 (494)
..+|+++++|||++ ||..++..+.+.+++.. .+.++|+++|+|..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 56899999999999 99999999999999864 47899999999864
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.55 E-value=9.5e-05 Score=75.04 Aligned_cols=75 Identities=9% Similarity=-0.072 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHHh-hCCCEeEEeC---CC------CCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhcc
Q psy16346 28 GLSGGEKKRANIACELL-TNPALMLLDE---PT------SGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMF 97 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~-~~p~~lllDE---Pt------sgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~ 97 (494)
.+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.++++.++.|.++++++|. . +..+++
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHH
Confidence 45677788888887775 5999999999 65 58999999999999999875668899998864 3 456666
Q ss_pred CeEEEEe
Q psy16346 98 DKLLLLC 104 (494)
Q Consensus 98 d~v~ll~ 104 (494)
|++.+++
T Consensus 336 ~~i~~i~ 342 (365)
T 1lw7_A 336 QVKAVIE 342 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 122
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.48 E-value=0.0075 Score=56.52 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=47.4
Q ss_pred hCCCEeEEeCCCCCc--CHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH-------HHhccCeEEEEeC
Q psy16346 45 TNPALMLLDEPTSGL--DSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ-------IFHMFDKLLLLCN 105 (494)
Q Consensus 45 ~~p~~lllDEPtsgL--D~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~-------i~~~~d~v~ll~~ 105 (494)
.+|+++++|||++.+ |+....+.+..+++++++.|.||++++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665566777777777778899999999986531 4567898888864
No 123
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.46 E-value=0.002 Score=69.80 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=58.0
Q ss_pred hhCCCEeEEeCC------CCCcCHHHHHHHHHHHHHHH-HhcCcEEEEEecCcc------hHHHhcc-----CeEEEEeC
Q psy16346 44 LTNPALMLLDEP------TSGLDSHAAYSLMSSLKRYA-EKEGKTVVVTVHQPS------SQIFHMF-----DKLLLLCN 105 (494)
Q Consensus 44 ~~~p~~lllDEP------tsgLD~~~~~~i~~~l~~l~-~~~g~tii~~~H~p~------~~i~~~~-----d~v~ll~~ 105 (494)
..+|+++++||| |+|||+.....+.+.++++. +..+.++++++|+.. ..+.+.. ..+.++++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 346999999999 99999999999999999964 335778888899854 1222222 35788899
Q ss_pred CeEeEeCChhhHHHHH
Q psy16346 106 GQTAYFGDTNKVVDFF 121 (494)
Q Consensus 106 G~~~~~G~~~~~~~~f 121 (494)
+..+..|+.+++.+..
T Consensus 224 ~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 224 PDLVDKGTEDKVVDVV 239 (608)
T ss_dssp GGGSSSSSTTCCCCCC
T ss_pred hhhcCcccHHHHHHHH
Confidence 9888888766554433
No 124
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.23 E-value=0.0015 Score=64.65 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
++..++||+.|||+++.+|+.++| .||+.+..++++.++++.+..|.|+|++||...
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 456679999999999999994444 455555556777777776566999999999853
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.05 E-value=0.0025 Score=64.81 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=46.4
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe
Q psy16346 36 RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 36 Rv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~ 104 (494)
+.+|+.+|..+|+++++|||+ |..+... .++. + ..|.+++.|+|..+ +.+.+||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~-~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-A-ETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-H-TTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-H-hcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 579999999999999999999 7666443 3443 3 45899999999953 678889887764
No 126
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.00029 Score=63.67 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=47.2
Q ss_pred HHHHHHH-cCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEe-------EEeCCCCC---cCHHHHHHHHHHHH
Q psy16346 4 VDHIINV-LDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALM-------LLDEPTSG---LDSHAAYSLMSSLK 72 (494)
Q Consensus 4 v~~~l~~-l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~l-------llDEPtsg---LD~~~~~~i~~~l~ 72 (494)
++++++. +. -.|+.+++ ++|||||||++|||+++.+|++. .-|.|..+ +|......+.+.+.
T Consensus 85 l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~ 157 (171)
T 2f1r_A 85 LDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFIL 157 (171)
T ss_dssp HHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHH
T ss_pred HHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHH
Confidence 4455555 43 35888876 59999999999999999999873 23454322 45566778888887
Q ss_pred HHHHhcC
Q psy16346 73 RYAEKEG 79 (494)
Q Consensus 73 ~l~~~~g 79 (494)
+..++.|
T Consensus 158 ~~~~~~~ 164 (171)
T 2f1r_A 158 SLLREGG 164 (171)
T ss_dssp HHHTC--
T ss_pred HHHhccC
Confidence 7664433
No 127
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.62 E-value=0.0015 Score=64.84 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccC
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFD 98 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d 98 (494)
++|+||+||+..++.++++|+++ ||| ..+.+.++++. .+.+|++++|.+. +.-.++|
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGSC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHhC
Confidence 68999999998888888899877 888 77888888874 4899999999865 3444444
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.60 E-value=0.0015 Score=61.99 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=38.6
Q ss_pred cCCCCChHHHHHHHHHHHH-hhCCCEeEEe----CCCCCcCHHHHHHHHHHHHHHHH
Q psy16346 25 MKRGLSGGEKKRANIACEL-LTNPALMLLD----EPTSGLDSHAAYSLMSSLKRYAE 76 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l-~~~p~~lllD----EPtsgLD~~~~~~i~~~l~~l~~ 76 (494)
.+..+|| |+ +++ +.+|+++++| |||+|||..+...+.+.++++.+
T Consensus 149 ~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 149 WIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp EEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 4456787 55 667 8999999999 99999999999999999998863
No 129
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.58 E-value=0.0016 Score=67.31 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHhhCCC---EeEEeCCC-CCcCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 29 LSGGEKKRANIACELLTNPA---LMLLDEPT-SGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~---~lllDEPt-sgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
++.++++|+.|+++++.+|+ ++++|||| +|||+... +.++++. . +.++|+++|.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEc
Confidence 45667778889999999999 99999999 69999873 4555664 3 7888888876
No 130
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.58 E-value=0.0022 Score=66.13 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=51.3
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCe
Q psy16346 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDK 99 (494)
Q Consensus 25 ~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~ 99 (494)
...++|+|++||+.++++|+.+|.++++ +++|...+ ...+.+++..++.|.+++.++..-...+.++++.
T Consensus 249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 4567999999999999999999999999 99999877 5555555554456777766654334445555444
No 131
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.50 E-value=0.041 Score=55.21 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhC--CCEeEEeCCCCCc----------CH---HHHHHHHHHHHH---HHHhcCcEEEEEecCcch-----
Q psy16346 35 KRANIACELLTN--PALMLLDEPTSGL----------DS---HAAYSLMSSLKR---YAEKEGKTVVVTVHQPSS----- 91 (494)
Q Consensus 35 kRv~ia~~l~~~--p~~lllDEPtsgL----------D~---~~~~~i~~~l~~---l~~~~g~tii~~~H~p~~----- 91 (494)
+-+.++++++.+ |+++++|||++.+ |+ ..+..+.+.+++ ++++.|.|||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888754 9999999999988 33 222233444444 456789999999996431
Q ss_pred ----------HHHhccCeEEEEeCCeEeEeC
Q psy16346 92 ----------QIFHMFDKLLLLCNGQTAYFG 112 (494)
Q Consensus 92 ----------~i~~~~d~v~ll~~G~~~~~G 112 (494)
.+...+|.++.+..+++.-.|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 144567777777666554444
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.84 E-value=0.00078 Score=66.14 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHHHH--HHHhhCCCEeEEeCCCCCcCHHH
Q psy16346 26 KRGLSGGEKKRANIA--CELLTNPALMLLDEPTSGLDSHA 63 (494)
Q Consensus 26 ~~~lSgGerkRv~ia--~~l~~~p~~lllDEPtsgLD~~~ 63 (494)
...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 132 ~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 132 DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 467899999999987 454 899999999999999853
No 133
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.45 E-value=0.076 Score=55.54 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHhhCCCEeEEeCCC----------CCcCHHHHHHHHHHHHHHH---HhcCcEEEEEecCcc
Q psy16346 30 SGGEKKRANIACELLTNPALMLLDEPT----------SGLDSHAAYSLMSSLKRYA---EKEGKTVVVTVHQPS 90 (494)
Q Consensus 30 SgGerkRv~ia~~l~~~p~~lllDEPt----------sgLD~~~~~~i~~~l~~l~---~~~g~tii~~~H~p~ 90 (494)
.|++++|-.+..+....|+++++||+. .|.|......+.+++..+- ...+..||.++|+|.
T Consensus 92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 367888889999999999999999994 4667666666666666552 235788999999974
No 134
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.32 E-value=0.025 Score=62.95 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=60.8
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEeEEeCCCC-CcCHHHHHHHHHHHHHHHHhcCcEEEEE-ecCcchHHHhccCeEEEEe
Q psy16346 27 RGLSGGEKKRANIACELLTNPALMLLDEPTS-GLDSHAAYSLMSSLKRYAEKEGKTVVVT-VHQPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~p~~lllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~-~H~p~~~i~~~~d~v~ll~ 104 (494)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+.. ...++++++ ||++ ..+.+.+++.-++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~-~~l~~~~~~~~vi~ 266 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA-EKFQRYFNDAPLLA 266 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC-HHHHHHTTSCCEEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH-HHHHHHhcCCCccc
Confidence 3478999999999999999999999999996 999988877777776654 346777775 7875 46777787544433
Q ss_pred -CCe
Q psy16346 105 -NGQ 107 (494)
Q Consensus 105 -~G~ 107 (494)
.|+
T Consensus 267 v~gr 270 (773)
T 2xau_A 267 VPGR 270 (773)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 443
No 135
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.31 E-value=0.12 Score=48.09 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=48.4
Q ss_pred HHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEeEeCChhhHHH
Q psy16346 40 ACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119 (494)
Q Consensus 40 a~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~~~G~~~~~~~ 119 (494)
..+++..+++++|| ||+..+.++.+.+. .+.||++++|++. ++.+ |+ +..| .|+++++..
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHH
Confidence 45667789999999 99999999998875 4899999999975 4443 43 6667 677777765
Q ss_pred HHH
Q psy16346 120 FFH 122 (494)
Q Consensus 120 ~f~ 122 (494)
.+.
T Consensus 161 rl~ 163 (219)
T 1s96_A 161 RMA 163 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 136
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.75 E-value=0.00067 Score=69.43 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=57.8
Q ss_pred CC--CEeEEeCCCCCcCHHHHHHHHHHHHHH-HHhcCcEEEEEecCcchHHHhccCeEE-EEeCC-eEeEeCChhh
Q psy16346 46 NP--ALMLLDEPTSGLDSHAAYSLMSSLKRY-AEKEGKTVVVTVHQPSSQIFHMFDKLL-LLCNG-QTAYFGDTNK 116 (494)
Q Consensus 46 ~p--~~lllDEPtsgLD~~~~~~i~~~l~~l-~~~~g~tii~~~H~p~~~i~~~~d~v~-ll~~G-~~~~~G~~~~ 116 (494)
+| ++.++|||+.++|+.......+.+++. + +.|.|++ +|+. .++.++||++. +|.+| ++++.|+.++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~-~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITS-RGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHH-hcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 78 899999999999999999999999988 6 4577764 8985 47899999999 99999 9998887644
No 137
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.43 E-value=0.011 Score=62.40 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=51.1
Q ss_pred HHHHHHcCCcccccccccCccCCCCChHHHHHH----------HHHHHHhhCCC-EeEEeCCCCCcCHHHHHHHHHHHHH
Q psy16346 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRA----------NIACELLTNPA-LMLLDEPTSGLDSHAAYSLMSSLKR 73 (494)
Q Consensus 5 ~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv----------~ia~~l~~~p~-~lllDEPtsgLD~~~~~~i~~~l~~ 73 (494)
.++++..|+.+..+.. ......+|+||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.+
T Consensus 247 ~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~ 323 (512)
T 2ius_A 247 YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIAR 323 (512)
T ss_dssp HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHH
Confidence 3556667765543210 001124678877642 24445567787 78999999988843 2344444444
Q ss_pred H---HHhcCcEEEEEecCcch
Q psy16346 74 Y---AEKEGKTVVVTVHQPSS 91 (494)
Q Consensus 74 l---~~~~g~tii~~~H~p~~ 91 (494)
+ .++.|.++|+++|.|+.
T Consensus 324 Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 324 LAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHHHCGGGTEEEEEEESCCCT
T ss_pred HHHHhhhCCcEEEEEecCCcc
Confidence 4 44558899999999973
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.33 E-value=0.038 Score=57.29 Aligned_cols=69 Identities=14% Similarity=0.276 Sum_probs=50.7
Q ss_pred CCCEeEEeCCCCCcCH-HHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEE-EeCCeEeEeCChh
Q psy16346 46 NPALMLLDEPTSGLDS-HAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLL-LCNGQTAYFGDTN 115 (494)
Q Consensus 46 ~p~~lllDEPtsgLD~-~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~l-l~~G~~~~~G~~~ 115 (494)
+|++|++||+..-.+. .++..+.+.+..+. +.|+.+|+++|.|..++..+.+++.- +..|.++..++++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887654 67788889998876 67899999999976543333344333 4567777777664
No 139
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.84 E-value=0.14 Score=46.84 Aligned_cols=71 Identities=20% Similarity=0.117 Sum_probs=53.7
Q ss_pred HHHHHHHHHHh--hCCCEeEEeCCCCC--cCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 34 KKRANIACELL--TNPALMLLDEPTSG--LDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 34 rkRv~ia~~l~--~~p~~lllDEPtsg--LD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
++.+.-++..+ .+.++++|||.... ++--...++.+.|.+. -.+..+|+|...+.+++.+.+|-|.-|..-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 34566677777 56799999999762 3333444577888753 357899999999999999999999998653
No 140
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.09 E-value=0.3 Score=48.67 Aligned_cols=56 Identities=9% Similarity=0.092 Sum_probs=44.3
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc-CcEEEEEec
Q psy16346 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE-GKTVVVTVH 87 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~-g~tii~~~H 87 (494)
+.||.+|++|+..|...+.++++++.|+|... ..++...++++.++. |..+|++-|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 36999999999999999999999999998654 336667777776566 677777654
No 141
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.49 E-value=0.81 Score=44.83 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCC----------------CcC--------------------H-HHHHHHHHHH
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTS----------------GLD--------------------S-HAAYSLMSSL 71 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPts----------------gLD--------------------~-~~~~~i~~~l 71 (494)
||.+|++|+..|...+.++++++.|+|.. |.+ . .....+.+.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L 213 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 213 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence 78888888877777666666666665532 111 0 2334666778
Q ss_pred HHHHHhcCcEEEEEecC
Q psy16346 72 KRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 72 ~~l~~~~g~tii~~~H~ 88 (494)
+++|++.|.+|++++|-
T Consensus 214 k~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 214 KKMARELDVVVIALSQL 230 (315)
T ss_dssp HHHHHHHTCEEEEEECC
T ss_pred HHHHHHhCCeEEEEeec
Confidence 88887888888888774
No 142
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.40 E-value=0.23 Score=48.81 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=35.1
Q ss_pred CCChHHHHHH---HHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 28 GLSGGEKKRA---NIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 28 ~lSgGerkRv---~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
..|||+.+++ .+++++..+|+++++|||.. ......+++.++++.
T Consensus 165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 165 HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 4689999999 89999999999999999974 334455666665554
No 143
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.39 E-value=0.04 Score=49.50 Aligned_cols=53 Identities=11% Similarity=-0.060 Sum_probs=39.3
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H 87 (494)
+..+|+|++||+.++|++..+|+++ +|+.....+.+.++.+. ..+..+|.+++
T Consensus 107 ~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~-~~~~~~i~t~~ 159 (191)
T 1zp6_A 107 LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG-AFEHHVLPVSG 159 (191)
T ss_dssp EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG-GGGGGEEECTT
T ss_pred eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC-cccccEEECCC
Confidence 3569999999999999999999876 68888887777776654 22334444443
No 144
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.04 E-value=0.5 Score=49.39 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=49.4
Q ss_pred CCCCChHHHHHHHHHH--HHhh---------------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 26 KRGLSGGEKKRANIAC--ELLT---------------NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~--~l~~---------------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
.++.||||+|-.-+++ +++. .-+++++||. +-+|...+...++.++++ |.=+|+++=
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP- 450 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAP- 450 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEES-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECc-
Confidence 4679999999744433 3322 1247999999 999999999999999876 444444442
Q ss_pred cchHHHhccCeEEEEe
Q psy16346 89 PSSQIFHMFDKLLLLC 104 (494)
Q Consensus 89 p~~~i~~~~d~v~ll~ 104 (494)
. .+....|.++.+.
T Consensus 451 -~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 -E-NISPERGTTYKLV 464 (483)
T ss_dssp -S-SCCCSSSEEEECC
T ss_pred -c-hhhhccCceEEEE
Confidence 2 3455677776663
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.52 E-value=0.95 Score=43.96 Aligned_cols=45 Identities=18% Similarity=0.077 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHhhCCCEeEEeCC-CCCcCHHHHHHHHHHHHHH
Q psy16346 30 SGGEKKRANIACELLTNPALMLLDEP-TSGLDSHAAYSLMSSLKRY 74 (494)
Q Consensus 30 SgGerkRv~ia~~l~~~p~~lllDEP-tsgLD~~~~~~i~~~l~~l 74 (494)
...+.+|..++.+...+++++++||| +.|+|......+.+..+.+
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 44566788899888899999999999 9999998888888877765
No 146
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.67 E-value=0.67 Score=46.24 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=48.1
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEe-CCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEe--cCcc
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLD-EPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV--HQPS 90 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~--H~p~ 90 (494)
...+|+||+|++. +.+...++-++++| +|..|+|......+.+.+++.. . +.+++++. ||..
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-DLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-TSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-CCCEEEEEECcccC
Confidence 3467999998876 55555677788999 9999999999888888887764 2 77888887 7643
No 147
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.63 E-value=0.31 Score=48.83 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHH---hh--CCCEeEEeCCC
Q psy16346 28 GLSGGEKKRANIACEL---LT--NPALMLLDEPT 56 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l---~~--~p~~lllDEPt 56 (494)
.+|+||+||..++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 66 89999999997
No 148
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.62 E-value=0.12 Score=52.06 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCeEe
Q psy16346 30 SGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTA 109 (494)
Q Consensus 30 SgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~~~ 109 (494)
+++...|-.|+.++..+|+.+++||+.. .+..+.++.+. ..+.|++.++|..+ ....+||+..+.+|...
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~-~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~~~ 305 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAA-SGHGGSITSCHAGS--CELTFERLALMVLQNRQ 305 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHH-TTCCSCEEEEECSS--HHHHHHHHHHHHTTSTT
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh-cCCCeEEEEECCCC--HHHHHHHHHHHHhcccc
Confidence 4677889999999999999999999986 34556777765 44567899999954 57889999999877543
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.31 E-value=0.26 Score=48.04 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH--HhcCcEEEE-EecCcchHHHhccCeEEEEeCCeEeEe
Q psy16346 40 ACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA--EKEGKTVVV-TVHQPSSQIFHMFDKLLLLCNGQTAYF 111 (494)
Q Consensus 40 a~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~--~~~g~tii~-~~H~p~~~i~~~~d~v~ll~~G~~~~~ 111 (494)
+.+.+.+|+++++| |+|+|+.....+.+..+-+. ...+.++++ ++|++ .++.+.+|++..+..|.++..
T Consensus 176 al~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 176 AKELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 33345999999999 88999876655544443322 122334454 47775 467777887666666666653
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.65 E-value=2.1 Score=40.89 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHH----------HHHHHHHHHHHHHHh---cCcEEEEEecCcc---hHH
Q psy16346 30 SGGEKKRANIACELLTNPALMLLDEPTSGLDSH----------AAYSLMSSLKRYAEK---EGKTVVVTVHQPS---SQI 93 (494)
Q Consensus 30 SgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~----------~~~~i~~~l~~l~~~---~g~tii~~~H~p~---~~i 93 (494)
+++++.|..+..+...+|.++++||+.+-++.. ....++..+...... .+..+|.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 567888888888888899999999998765532 223344444433211 2456788888753 344
Q ss_pred HhccCeEEEE
Q psy16346 94 FHMFDKLLLL 103 (494)
Q Consensus 94 ~~~~d~v~ll 103 (494)
.+.|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5567665444
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.81 E-value=0.033 Score=50.90 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=39.8
Q ss_pred HHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 42 ELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 42 ~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
+++.+|++.+|||||+++|..+...+.+.|++..++ +...|.+ ..+|+++++++
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGST-----TTCSEEEECSS
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc-----CCceEEEECCC
Confidence 556677777888889999999999999999887643 2234532 57999887753
No 152
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=80.84 E-value=2.3 Score=39.47 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=42.2
Q ss_pred CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEec---------CcchHHHhccCeEEEEe
Q psy16346 46 NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH---------QPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 46 ~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H---------~p~~~i~~~~d~v~ll~ 104 (494)
+|+++++||--. |+. ++++.++.+++ .|.+||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 35566677774 5999999999 66778888999999874
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.92 E-value=2.5 Score=41.36 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHHHHHh---hCCCEeEEeCCCCCcCH--------H----HHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 35 KRANIACELL---TNPALMLLDEPTSGLDS--------H----AAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 35 kRv~ia~~l~---~~p~~lllDEPtsgLD~--------~----~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
+.+..++.++ .+|+++++|+.++-.+. . ...++++.|++++++.|.+||++.|-.
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 5677777777 57999999999875432 1 235677788888888899999887753
No 154
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=77.25 E-value=0.57 Score=41.88 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHH
Q psy16346 34 KKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKR 73 (494)
Q Consensus 34 rkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~ 73 (494)
.++..+|++++.+|+++++| ||++|.....++.+.+.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
No 155
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=76.59 E-value=4 Score=40.34 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=39.9
Q ss_pred HHHHHHHHHh----hCCCEeEEeCCCCCcCHH------------HHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 35 KRANIACELL----TNPALMLLDEPTSGLDSH------------AAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 35 kRv~ia~~l~----~~p~~lllDEPtsgLD~~------------~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
+.+..++.++ .+++++++|+.++-.+.. ...+++..|++++++.|.+||++.|-.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 4455556665 568999999999865432 145677778888888899988888764
No 156
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.79 E-value=8.3 Score=37.88 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=35.6
Q ss_pred hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHh--cCcEEEEEecCcc
Q psy16346 45 TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK--EGKTVVVTVHQPS 90 (494)
Q Consensus 45 ~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~--~g~tii~~~H~p~ 90 (494)
.+|.++++||+..- |......+.+.+.+..+. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 888888888888766521 4788999999973
No 157
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=73.23 E-value=1.9 Score=44.21 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=46.8
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHH-HHHhcCcEEEEEecC
Q psy16346 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKR-YAEKEGKTVVVTVHQ 88 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~-l~~~~g~tii~~~H~ 88 (494)
.+++-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +. ..|.+|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCC
Confidence 3677666 7899999999999999999999999999999999987 65 678888877653
No 158
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=71.02 E-value=11 Score=38.56 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHh--hCCCEeEEeCCCCCcCH----------HHHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 40 ACELL--TNPALMLLDEPTSGLDS----------HAAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 40 a~~l~--~~p~~lllDEPtsgLD~----------~~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
++.+. .+|+++++|..+.=.++ .....+.+.|+.+|++.+.+||+++|-
T Consensus 302 ~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 302 ARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp HHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 44444 47899999988753322 223578889999998899999999884
No 159
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=70.60 E-value=19 Score=35.63 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=34.6
Q ss_pred HHHHHHHHh--hCCCEeEEeCCCCCcCHH-------------HH---HHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 36 RANIACELL--TNPALMLLDEPTSGLDSH-------------AA---YSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 36 Rv~ia~~l~--~~p~~lllDEPtsgLD~~-------------~~---~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
-..+++.++ .+++++++|+++.=.... .+ .+.+..|+.++++.+.+||++.|-
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~ 199 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 199 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 445666664 579999999999865311 11 234445555567889999988775
No 160
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=70.06 E-value=7.9 Score=36.15 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=44.4
Q ss_pred hhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecC---------cchHHHhccCeEEEEe
Q psy16346 44 LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ---------PSSQIFHMFDKLLLLC 104 (494)
Q Consensus 44 ~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~---------p~~~i~~~~d~v~ll~ 104 (494)
+.+.+++++||----.| +.+.++.++ ..|+.||++.++ ++.++..++|.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~-~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMA-NAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHH-HTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHH-hCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 47789999999877643 666666666 469999999999 8889999999999874
No 161
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=69.69 E-value=0.046 Score=50.19 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=45.4
Q ss_pred CCCChHHHHHHHHH-HHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC
Q psy16346 27 RGLSGGEKKRANIA-CELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN 105 (494)
Q Consensus 27 ~~lSgGerkRv~ia-~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~ 105 (494)
.+.|+||+||++++ +.++.++.++++|||.. ..+++ . --.++++.+.....+.+...|. +..
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~---~-~d~~i~vd~~~~~~~~R~~~R~--~~~ 172 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTA---I-WDVSIRLEVPMADLEARLVQRW--LDH 172 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGG---T-CSEEEEECCCHHHHHHHHHHHH--HHT
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHH---h-cCEEEEEeCCHHHHHHHHHHHH--Hhc
Confidence 45799999999987 77777777777888731 11121 1 2356666666554456666662 334
Q ss_pred CeEeEeCChhhHHHHHH
Q psy16346 106 GQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 106 G~~~~~G~~~~~~~~f~ 122 (494)
|+ +.+++.+...
T Consensus 173 g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 173 GL-----NHDAAVARAQ 184 (208)
T ss_dssp TC-----CHHHHHHHHH
T ss_pred CC-----CHHHHHHHHH
Confidence 54 5566665443
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=69.56 E-value=2.3 Score=42.64 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHHHHHcCCcccccccccCccCCCCChHHHHHHHHH----HHH-hhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHh
Q psy16346 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIA----CEL-LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77 (494)
Q Consensus 4 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia----~~l-~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~ 77 (494)
+.++++.+++.+..--.|++ +..-+|+|+++|+.++ +++ ..+|++ +|+|++|......+.+.|.+....
T Consensus 281 ~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 45677888776544333444 3455788888888887 444 334444 899999999999999999887644
No 163
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.36 E-value=5.7 Score=36.99 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHhhCCCEeEEeCCCCC-cCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q psy16346 40 ACELLTNPALMLLDEPTSG-LDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87 (494)
Q Consensus 40 a~~l~~~p~~lllDEPtsg-LD~~~~~~i~~~l~~l~~~~g~tii~~~H 87 (494)
..++..+|+++++||+-.- .+........+.+...- ..|..++.|+|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence 3334578999999997642 33221222222222232 45888999987
No 164
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=67.39 E-value=4.4 Score=39.30 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=34.8
Q ss_pred hhCCCEeEEeCCCC-CcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy16346 44 LTNPALMLLDEPTS-GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91 (494)
Q Consensus 44 ~~~p~~lllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~ 91 (494)
..+++++++||+-. .-+......+...+..+. +.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~-~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEecCChH
Confidence 45799999999866 234477788888888876 557777777776543
No 165
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=65.51 E-value=19 Score=36.87 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=30.0
Q ss_pred CCC--EeEEeCCCC----C--cC-HHHHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 46 NPA--LMLLDEPTS----G--LD-SHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 46 ~p~--~lllDEPts----g--LD-~~~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
+|+ ++++|--.. + -+ ......+.+.|+.+|++.|.+||+++|-
T Consensus 308 ~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 308 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 677 888885432 1 01 1234577788999998899999999884
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.47 E-value=33 Score=34.01 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=46.3
Q ss_pred HHHHHHHHHh--hCCCEeEEeCCCCCcC----------------HHHHHHHHHHHHHHHHhcCcEEEEEecCcc------
Q psy16346 35 KRANIACELL--TNPALMLLDEPTSGLD----------------SHAAYSLMSSLKRYAEKEGKTVVVTVHQPS------ 90 (494)
Q Consensus 35 kRv~ia~~l~--~~p~~lllDEPtsgLD----------------~~~~~~i~~~l~~l~~~~g~tii~~~H~p~------ 90 (494)
+-+.+++.++ .+|+++++|+-++=.. .....++++.|++++++.|.+||++.|-..
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 3456667665 4699999998655332 122345566677888788999999887621
Q ss_pred ---------hHHHhccCeEEEEeCC
Q psy16346 91 ---------SQIFHMFDKLLLLCNG 106 (494)
Q Consensus 91 ---------~~i~~~~d~v~ll~~G 106 (494)
..+.+.+|-++.+..+
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEec
Confidence 1134567777777653
No 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=65.00 E-value=0.014 Score=56.19 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=46.7
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhhCCCE--eEEeCCCCCcCHHHH--------H-HHHHHHHHHHHhcCcEEEE
Q psy16346 16 CQHTIIGDYMKRGLSGGEKKRANIACELLTNPAL--MLLDEPTSGLDSHAA--------Y-SLMSSLKRYAEKEGKTVVV 84 (494)
Q Consensus 16 ~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~--lllDEPtsgLD~~~~--------~-~i~~~l~~l~~~~g~tii~ 84 (494)
..++.|+.... .+|+| ||+.+++.+..+|++ +++||.|+.+|...+ . ...+.++.+ ..|+|.+.
T Consensus 161 ~l~~vi~qrl~-~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~--~~g~t~~~ 235 (261)
T 2eyu_A 161 ILQGIISQRLL-PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY--KQGLITLE 235 (261)
T ss_dssp HEEEEEEEEEE-CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHH--HTTSSCHH
T ss_pred HhhEEEEEEeE-ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH--HcCCCCHH
Confidence 34455554322 35788 889999999999999 999999999998742 2 234444444 34887665
Q ss_pred EecC
Q psy16346 85 TVHQ 88 (494)
Q Consensus 85 ~~H~ 88 (494)
..|.
T Consensus 236 ~a~r 239 (261)
T 2eyu_A 236 DAME 239 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 168
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=64.69 E-value=1.5 Score=46.94 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHH
Q psy16346 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKR 73 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~ 73 (494)
+++|+|++|++..+.....++.++++||... |++..+..+.+.|++
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 5799999999999999999999999999988 899988888888764
No 169
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=63.04 E-value=4 Score=36.41 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=29.2
Q ss_pred hhCCCEeEEeCCCC-CcCHHHHHHHH-HHHHHHHHhcCcEEEEEecCcchHHHhc
Q psy16346 44 LTNPALMLLDEPTS-GLDSHAAYSLM-SSLKRYAEKEGKTVVVTVHQPSSQIFHM 96 (494)
Q Consensus 44 ~~~p~~lllDEPts-gLD~~~~~~i~-~~l~~l~~~~g~tii~~~H~p~~~i~~~ 96 (494)
+.+++++++||+-. .++......+. ..+.... ..+..+|++++.+..++...
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~-~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRM-FENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHH-HTTCCEEEEESSCHHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHH-hCCCCEEEEcCCCHHHHHHH
Confidence 45678999999932 23332233344 3555443 34567777777765565543
No 170
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=62.52 E-value=0.43 Score=47.12 Aligned_cols=52 Identities=19% Similarity=0.047 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCe
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDK 99 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~ 99 (494)
+..||+|+|+|+.++ .+||+.+..++.+++++.++..|. .|++. .+..++++
T Consensus 160 ~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~~-----~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 160 SGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMDV-----EIEDA-AAEMIAKR 211 (334)
T ss_dssp GGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTTC-----CBCHH-HHHHHHHT
T ss_pred cccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcCC-----CcCHH-HHHHHHHh
Confidence 457999999998554 788888899999999998865552 56643 44444443
No 171
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=62.36 E-value=13 Score=33.31 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=40.7
Q ss_pred CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEec---------CcchHHHhccCeEEEEe
Q psy16346 46 NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH---------QPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 46 ~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H---------~p~~~i~~~~d~v~ll~ 104 (494)
+.+++++||--- +|+. .++.+++++. .|..||++.+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 6643 3567777774 4999999999 66778888999887774
No 172
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=58.77 E-value=14 Score=34.06 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=42.4
Q ss_pred CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEec---------CcchHHHhccCeEEEEe
Q psy16346 46 NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH---------QPSSQIFHMFDKLLLLC 104 (494)
Q Consensus 46 ~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H---------~p~~~i~~~~d~v~ll~ 104 (494)
+.+++++||--- +|.. .++.+++++. .|..||++.+ .++.++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 478999999866 6644 3467777764 5999999999 78888999999998874
No 173
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=58.76 E-value=1.8 Score=43.32 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 3 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
++.++++.+|+.+..|. ...++| ||+||++||+++ +++.-.....++++++.
T Consensus 294 ~~~e~l~~~gl~~f~~~-----~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 294 GFVEFHDYLGHCKYRDC-----KHDADP-GCAIREAVENGA---------------IAETRFENYHRILESMA 345 (358)
T ss_dssp TSGGGGGGTTCSSSTTC-----CSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCchhcCC-----CcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHHH
Confidence 35567788888777665 456789 999999999764 34444445556666654
No 174
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=58.38 E-value=4.2 Score=40.14 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=39.5
Q ss_pred CCCChHHHHHHHHHHHHhh------CCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 27 RGLSGGEKKRANIACELLT------NPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~------~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
+.+|+|++|++..+.+++. +|++++ +|++|.....++.+.|.+..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999887 688876 99999999999999998875
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=58.07 E-value=5.6 Score=35.25 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy16346 37 ANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75 (494)
Q Consensus 37 v~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~ 75 (494)
...|++++.+|++.++| ||++|.....++.+.+.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 176
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=57.64 E-value=11 Score=37.06 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=32.4
Q ss_pred HHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 38 NIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 38 ~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
.+++++..++.++.+|.++. .++++.++.+.+..+.|+|++||..
T Consensus 235 ~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 235 KIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 47778877666777774443 4666677777666799999999964
No 177
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=54.49 E-value=0.03 Score=56.76 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHHhhCCCE--eEEeCCCCCcCHHH---H-----HHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 29 LSGGEKKRANIACELLTNPAL--MLLDEPTSGLDSHA---A-----YSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~--lllDEPtsgLD~~~---~-----~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
.|+| ||+.|++++..+|++ +++||.|+.||... . ..+.+...+.. ..|+|.+...|..+
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~-~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY-KQGLITLEDAMEAS 352 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT-TTSSSCTTTTTSSC
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH-HCCCCCHHHHHHHc
Confidence 4778 789999999999999 99999999999751 1 22343333433 45888887777755
No 178
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=54.26 E-value=17 Score=34.84 Aligned_cols=52 Identities=13% Similarity=0.317 Sum_probs=32.3
Q ss_pred HHHHHhhCCCEeEEeCCCC-------------CcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 39 IACELLTNPALMLLDEPTS-------------GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 39 ia~~l~~~p~~lllDEPts-------------gLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+..+.-..|.++++||.-+ +........+++.+..+....+..||.+++.|.
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 4444456799999999642 233334455555555443334678888998873
No 179
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=53.80 E-value=7.6 Score=41.58 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=45.7
Q ss_pred CCCCChH-HHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q psy16346 26 KRGLSGG-EKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87 (494)
Q Consensus 26 ~~~lSgG-erkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H 87 (494)
..+++.+ +++...+.+.++.+|.-++++.+++++|..+. ...+.++++....++||++.+|
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 4555444 45778899999999999999999999998743 4677777775444577777776
No 180
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=52.75 E-value=21 Score=35.47 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=37.7
Q ss_pred CCCEeEEeCCCCCcC---HHHHHHHHHHHHHHHHhcCcEEEEEecCcch
Q psy16346 46 NPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91 (494)
Q Consensus 46 ~p~~lllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~ 91 (494)
.|.++++||--.=++ +..+..+.+.+++.+ +.|..+++++|.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCeEEEEEcCCHHH
Confidence 588999999988884 667778888888875 779999999999874
No 181
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=50.15 E-value=0.019 Score=60.78 Aligned_cols=58 Identities=10% Similarity=0.177 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEE--EecCcchHHHhccC
Q psy16346 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV--TVHQPSSQIFHMFD 98 (494)
Q Consensus 27 ~~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~--~~H~p~~~i~~~~d 98 (494)
..+|||||||..++ ++ | ++|||+.....+.+.+.++. ..|+|+++ ++|+.. ++...++
T Consensus 399 ~~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 399 MWVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp EEESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHHH-HHHHHHT
T ss_pred EEEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHHH-HHHHHcC
Confidence 35799999887654 12 7 99999988777777777765 45788875 889864 5665554
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=49.71 E-value=21 Score=33.38 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=33.5
Q ss_pred HHHHHHhhCCCEeEEeCCCCC----------cCHHHHHHHHHHHHHHH---HhcCcEEEEEecCc
Q psy16346 38 NIACELLTNPALMLLDEPTSG----------LDSHAAYSLMSSLKRYA---EKEGKTVVVTVHQP 89 (494)
Q Consensus 38 ~ia~~l~~~p~~lllDEPtsg----------LD~~~~~~i~~~l~~l~---~~~g~tii~~~H~p 89 (494)
.+..+...+|.++++||.-.- -|......+.+.+..+. ...+..+|.+++.|
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 344455567899999997432 35566677777777652 12345677777765
No 183
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=48.73 E-value=58 Score=33.49 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=36.6
Q ss_pred HHHHHHHh--hCCCEeEEeCCCCCc-------CH-HHHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 37 ANIACELL--TNPALMLLDEPTSGL-------DS-HAAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 37 v~ia~~l~--~~p~~lllDEPtsgL-------D~-~~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
+..++.+. .+|+++++|--+. + +. ....++++.|+++|++.|.+|+++.|-.
T Consensus 343 ~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 343 LAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 33444444 4799999995433 2 21 3345688899999999999999998864
No 184
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=47.34 E-value=28 Score=33.49 Aligned_cols=52 Identities=25% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHHHHHHh---hCCCEeEEeCCCCCcC--------HH----HHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 37 ANIACELL---TNPALMLLDEPTSGLD--------SH----AAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 37 v~ia~~l~---~~p~~lllDEPtsgLD--------~~----~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
+.....++ .+++++++|.-+.=.. .. ...+++..|++++++.|.+||++.|-
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 44455555 3589999998875321 11 23567778888888889888887664
No 185
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.20 E-value=7.6 Score=37.94 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=26.0
Q ss_pred CCCEeEEeCCCCCcC---HHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 46 NPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 46 ~p~~lllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
.|.++++||+..-.| ......+.+.+.+. +..+.++|+++|++.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVK 174 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCC
Confidence 388999999987653 22333333333221 234678899999864
No 186
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=47.20 E-value=12 Score=33.29 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=31.2
Q ss_pred CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 46 NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 46 ~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 468999999765 7888877777777543 23677888888764
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=47.08 E-value=13 Score=35.96 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=31.0
Q ss_pred hhCCCEeEEeCCCC-CcCHHHHHHHHH-HHHHHHHhcCcEEEEEecCcchHHHhcc
Q psy16346 44 LTNPALMLLDEPTS-GLDSHAAYSLMS-SLKRYAEKEGKTVVVTVHQPSSQIFHMF 97 (494)
Q Consensus 44 ~~~p~~lllDEPts-gLD~~~~~~i~~-~l~~l~~~~g~tii~~~H~p~~~i~~~~ 97 (494)
+.++++|++||.-. .++...+..+.. ++.... ..++.+|+|++.+.+++...+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~-~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRM-LEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHH-HHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHH-HCCCcEEEECCCCHHHHHHHH
Confidence 45789999999832 344444444544 555432 346678888888776665543
No 188
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=45.56 E-value=30 Score=31.55 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHhhCCCEeEEeCCCC-CcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCe
Q psy16346 30 SGGEKKRANIACELLTNPALMLLDEPTS-GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDK 99 (494)
Q Consensus 30 SgGerkRv~ia~~l~~~p~~lllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~ 99 (494)
+.|...+. ....+.+.+++++||.-. ++|.......++.+.+.. ..-++++++..-|.+...+.+++
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHHHHHHcCC
Confidence 44555444 233578899999999976 788887765665555543 23456777666655555555553
No 189
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=45.20 E-value=17 Score=32.56 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=30.6
Q ss_pred hCCCEeEEeCCCCCc-CHHHHHHHHHHHHHHHHhcCcE-EEEEecCcc
Q psy16346 45 TNPALMLLDEPTSGL-DSHAAYSLMSSLKRYAEKEGKT-VVVTVHQPS 90 (494)
Q Consensus 45 ~~p~~lllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~t-ii~~~H~p~ 90 (494)
.+|+++++||.-.-- +......+.+.+.+.. +.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~-~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA-EQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH-HHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHH-HcCCCeEEEEcCCCH
Confidence 568999999965422 2333777888888876 44554 777777644
No 190
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=45.17 E-value=52 Score=32.19 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCEeEEeCC-------CCCcCHHHHHHHHHHHHHHH---H--hcCcEEEEEecCcc---hHHHhccCeE
Q psy16346 36 RANIACELLTNPALMLLDEP-------TSGLDSHAAYSLMSSLKRYA---E--KEGKTVVVTVHQPS---SQIFHMFDKL 100 (494)
Q Consensus 36 Rv~ia~~l~~~p~~lllDEP-------tsgLD~~~~~~i~~~l~~l~---~--~~g~tii~~~H~p~---~~i~~~~d~v 100 (494)
|-.+..+-..+|.++++||. ..+.+........+.+..+- . ..+..+|.+++.|. ..+.+.|++.
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~ 245 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKR 245 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEE
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceE
Confidence 33445555578999999998 33333333333334444432 1 12445677787653 2344445543
Q ss_pred E
Q psy16346 101 L 101 (494)
Q Consensus 101 ~ 101 (494)
+
T Consensus 246 i 246 (357)
T 3d8b_A 246 L 246 (357)
T ss_dssp E
T ss_pred E
Confidence 3
No 191
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=45.11 E-value=25 Score=32.15 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=42.8
Q ss_pred hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhc---------------CcEEEEEecCcch---HHHhccCeEEEEe--
Q psy16346 45 TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE---------------GKTVVVTVHQPSS---QIFHMFDKLLLLC-- 104 (494)
Q Consensus 45 ~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~---------------g~tii~~~H~p~~---~i~~~~d~v~ll~-- 104 (494)
.+.++++|||... .....+-+.++..-... ...+|+|+..+.. ....+-+|+..++
T Consensus 102 ~~~kIiiLDEad~----~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~ 177 (212)
T 1tue_A 102 TDTKVAMLDDATT----TCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFP 177 (212)
T ss_dssp TTCSSEEEEEECH----HHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECC
T ss_pred CCCCEEEEECCCc----hhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcC
Confidence 3578999999863 33344445666653211 3467777766321 1233566777653
Q ss_pred -------CCeEeEeCChhhHHHHHHh
Q psy16346 105 -------NGQTAYFGDTNKVVDFFHN 123 (494)
Q Consensus 105 -------~G~~~~~G~~~~~~~~f~~ 123 (494)
+|.-+|.=+.++...+|+.
T Consensus 178 ~~~p~~~~g~p~~~~~~~~wk~ff~~ 203 (212)
T 1tue_A 178 NAFPFDKNGNPVYEINDKNWKCFFER 203 (212)
T ss_dssp SCCCBCTTSCBSCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCeeEEeCcchHHHHHHH
Confidence 3555555555666666654
No 192
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=42.25 E-value=18 Score=31.94 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=35.2
Q ss_pred CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCc---------chHHHhccCeEEEE
Q psy16346 46 NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP---------SSQIFHMFDKLLLL 103 (494)
Q Consensus 46 ~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p---------~~~i~~~~d~v~ll 103 (494)
+++++++||--. +|+ .+++.++++++ .|..|+++.+.. ...+...+|.+.-|
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~-~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l 136 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLD-RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKK 136 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHH-TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHH-CCCCEEEEeeccccccCCccchHHHHHHhhheEEe
Confidence 578999999754 543 36667777774 489999998842 23455556666544
No 193
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=41.05 E-value=28 Score=28.60 Aligned_cols=90 Identities=10% Similarity=0.123 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHH-HHHhhCCCEeEEe-CCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEe-
Q psy16346 28 GLSGGEKKRANIA-CELLTNPALMLLD-EPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC- 104 (494)
Q Consensus 28 ~lSgGerkRv~ia-~~l~~~p~~lllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~- 104 (494)
.|.-|.-.++.=. ..+..+|+.+++| ...+.+|+.....+.+..+++. +.|..++++.-+| .+.+.+++.-+..
T Consensus 29 ~L~f~~a~~~~~~l~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~--~v~~~l~~~gl~~~ 105 (130)
T 4dgh_A 29 PFFFAAAETFERVMGSIQETPQILILRLKWVPFMDITGIQTLEEMIQSFH-KRGIKVLISGANS--RVSQKLVKAGIVKL 105 (130)
T ss_dssp SCCHHHHHHHHHHHHHSSSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHH-TTTCEEEEECCCH--HHHHHHHHTTHHHH
T ss_pred eEeehhHHHHHHHHHHhccCCCEEEEECCCCCcccHHHHHHHHHHHHHHH-HCCCEEEEEcCCH--HHHHHHHHcCChhh
Confidence 4555544433211 1233578889999 6788999999999999999987 6788888776654 4454444322211
Q ss_pred CCeEeEeCChhhHHHH
Q psy16346 105 NGQTAYFGDTNKVVDF 120 (494)
Q Consensus 105 ~G~~~~~G~~~~~~~~ 120 (494)
-|+...+.+.+++++.
T Consensus 106 ~~~~~i~~s~~~Al~~ 121 (130)
T 4dgh_A 106 VGEQNVYPVFEGALSA 121 (130)
T ss_dssp HCGGGEESSHHHHHHH
T ss_pred cCcccccCCHHHHHHH
Confidence 1222234555555544
No 194
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=40.98 E-value=0.45 Score=45.70 Aligned_cols=44 Identities=9% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEeEEeCCCC------------CcCHHHHHHHHHHH
Q psy16346 26 KRGLSGGEKKRANIACELLTNPALMLLDEPTS------------GLDSHAAYSLMSSL 71 (494)
Q Consensus 26 ~~~lSgGerkRv~ia~~l~~~p~~lllDEPts------------gLD~~~~~~i~~~l 71 (494)
...|||||+||+.+++++..+|+++ ||++. --|...+.++++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4579999999999999999999975 99874 12566666665543
No 195
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.07 E-value=18 Score=34.90 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 46 NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 46 ~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+++++++|| ...+++.....+.+.+.+.. ....+|+++++|.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence 456999999 78899998888888888753 2455677777765
No 196
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=37.22 E-value=81 Score=31.21 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=33.8
Q ss_pred HHHHHHHHHh--hCCCEeEEeCCCCCc-----CH--------HHHH---HHHHHHHHHHHhcCcEEEEEecC
Q psy16346 35 KRANIACELL--TNPALMLLDEPTSGL-----DS--------HAAY---SLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 35 kRv~ia~~l~--~~p~~lllDEPtsgL-----D~--------~~~~---~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
+-+.+++.++ .+++++++|..+.=. |. ..+. +++..|+.++++.+.+||++.|-
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 3455666666 469999999988643 11 1112 34444445567788888887765
No 197
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=36.81 E-value=5.1 Score=37.68 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=27.7
Q ss_pred hHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCC
Q psy16346 2 TYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPA 48 (494)
Q Consensus 2 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ 48 (494)
++++++-+.+|. +.-+. ..+++|||+.+++..|++|+..|+
T Consensus 53 ~~i~~le~~lg~-~L~~R-----~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 53 DAINEMNQLSEH-ILVER-----ATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHHHHHTS-CCEEE-----CCCC-----EEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CeEEe-----cCCCCCCCceEECHHHHHHHHHHH
Confidence 356777778887 44442 467899999999999999998886
No 198
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=36.28 E-value=0.8 Score=46.92 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=27.6
Q ss_pred HHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhhCCCEeE
Q psy16346 7 IINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALML 51 (494)
Q Consensus 7 ~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~~ll 51 (494)
.++.+|+.+.. ....|||||+|| |+++++.+|++..
T Consensus 279 rL~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 279 RLRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 35666776532 235799999999 9999999999865
No 199
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=36.12 E-value=4.7 Score=36.07 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH-HHhccCeEEEEe
Q psy16346 30 SGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ-IFHMFDKLLLLC 104 (494)
Q Consensus 30 SgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~-i~~~~d~v~ll~ 104 (494)
+.|+.+|..++.....+|+..-.+ .+.++|.....+.+.+++. .+.++|+.+|...+. ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 578899999998888887644322 3455666666555554432 355788888875422 256788887773
No 200
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=35.05 E-value=29 Score=28.77 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=39.3
Q ss_pred hCCCEeEEe-CCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccC
Q psy16346 45 TNPALMLLD-EPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFD 98 (494)
Q Consensus 45 ~~p~~lllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d 98 (494)
.+++.+++| ...+.+|+.....+.+..+++. +.|..+.++.-+| .+.+.++
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~--~v~~~l~ 101 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCE-KRGTILLLSGVSD--RLYGALN 101 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHH-HHTCEEEEESCCH--HHHHHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHH-HCCCEEEEEcCCH--HHHHHHH
Confidence 578889998 5788999999999999999987 5688887776554 3444443
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=34.62 E-value=43 Score=34.62 Aligned_cols=52 Identities=13% Similarity=0.304 Sum_probs=31.3
Q ss_pred HHHHHhhCCCEeEEeCCC----------CCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 39 IACELLTNPALMLLDEPT----------SGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 39 ia~~l~~~p~~lllDEPt----------sgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+..+--..|.++++||-- ..++......+.+.+.......+..||.+++.|.
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 344445678899999961 2233344555556655543334566777888773
No 202
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=34.48 E-value=92 Score=28.22 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHHhhCCCEeEEeCCCCCc-----------CHHHHHHHHHHHHHHHH---hcCcEEEEEecCcc
Q psy16346 39 IACELLTNPALMLLDEPTSGL-----------DSHAAYSLMSSLKRYAE---KEGKTVVVTVHQPS 90 (494)
Q Consensus 39 ia~~l~~~p~~lllDEPtsgL-----------D~~~~~~i~~~l~~l~~---~~g~tii~~~H~p~ 90 (494)
+..+.-..|.++++||.-.=. +......+.+.+..+.. ..+..+|.++..|.
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 333444568999999986521 23333444555554431 23456677776654
No 203
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=34.01 E-value=46 Score=29.93 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=41.4
Q ss_pred hhCCCEeEEeCCCC----CcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchH---------HHhccCeEEEE
Q psy16346 44 LTNPALMLLDEPTS----GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQ---------IFHMFDKLLLL 103 (494)
Q Consensus 44 ~~~p~~lllDEPts----gLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~---------i~~~~d~v~ll 103 (494)
-.+|+++++|.-+. .-|.....++...|++++++.|.+++++.|..... +...+|-++.|
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l 205 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVL 205 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEE
Confidence 35899999996542 12455667888899999999999999999864321 23356666655
No 204
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=33.64 E-value=19 Score=34.64 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHHHh--hCCCEeEEeCCCCCcCHHH-HHHHHHHHHHHHHhcCc--EEEEEecCcchHHHhccCeEE
Q psy16346 29 LSGGEKKRANIACELL--TNPALMLLDEPTSGLDSHA-AYSLMSSLKRYAEKEGK--TVVVTVHQPSSQIFHMFDKLL 101 (494)
Q Consensus 29 lSgGerkRv~ia~~l~--~~p~~lllDEPtsgLD~~~-~~~i~~~l~~l~~~~g~--tii~~~H~p~~~i~~~~d~v~ 101 (494)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++..|. .+.++.|+. ..+-+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 4555665 67888888 7888876 66777888888754453 566666764 35666666554
No 205
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=33.30 E-value=0.61 Score=49.08 Aligned_cols=74 Identities=11% Similarity=-0.020 Sum_probs=53.4
Q ss_pred HHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHH--HhccCeEEEEeCCeEeEe-CChhhH
Q psy16346 41 CELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQI--FHMFDKLLLLCNGQTAYF-GDTNKV 117 (494)
Q Consensus 41 ~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i--~~~~d~v~ll~~G~~~~~-G~~~~~ 117 (494)
++|..+ +++|+ ||.+.+|| .+..+.. ++.+.-+.++.+++|... .+ .++.|++..+.++.++.. +++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~md-~~t~~~la~~ia~~gg~gii~~~~t~e~~ 100 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSPMD-TVTEADMAIAMALMGGIGFIHHNCTPEFQ 100 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECCCT-TTCSHHHHHHHHHTTCEEEECCSSCHHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEehh-hhhhhhHHHHHHhcCCeeEEecCCCHHHH
Confidence 788888 99999 99999999 4544433 333445677888888754 55 577888888877777754 588877
Q ss_pred HHHH
Q psy16346 118 VDFF 121 (494)
Q Consensus 118 ~~~f 121 (494)
.++.
T Consensus 101 ~~~v 104 (514)
T 1jcn_A 101 ANEV 104 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 206
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=32.23 E-value=1.5e+02 Score=35.72 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=44.8
Q ss_pred HHHHHHHHHh--hCCCEeEEeCCCCCcC-H------------HHHHHHHHH---HHHHHHhcCcEEEEEecCcc------
Q psy16346 35 KRANIACELL--TNPALMLLDEPTSGLD-S------------HAAYSLMSS---LKRYAEKEGKTVVVTVHQPS------ 90 (494)
Q Consensus 35 kRv~ia~~l~--~~p~~lllDEPtsgLD-~------------~~~~~i~~~---l~~l~~~~g~tii~~~H~p~------ 90 (494)
+-...++.++ .+|+++++|+...=.. . ....++.+. |+.++++.|.+||++.|...
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444555554 5799999999887542 1 122344444 44457788999999988321
Q ss_pred ---------hHHHhccCeEEEEeC
Q psy16346 91 ---------SQIFHMFDKLLLLCN 105 (494)
Q Consensus 91 ---------~~i~~~~d~v~ll~~ 105 (494)
..+.+.+|-++.+..
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R 900 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRR 900 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEe
Confidence 235566777888853
No 207
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=32.01 E-value=37 Score=28.22 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=47.1
Q ss_pred CCCEeEEe-CCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC-C-eEeEeCChhhHHHH
Q psy16346 46 NPALMLLD-EPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN-G-QTAYFGDTNKVVDF 120 (494)
Q Consensus 46 ~p~~lllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~-G-~~~~~G~~~~~~~~ 120 (494)
+++.+++| ...+.+|+.....+.+..+++. +.|..+.++..+| .+.+.+++.-+... | +...+.+.++++++
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~ 137 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYG-DVGIYVYLAGCSA--QVVNDLTSNRFFENPALKELLFHSIHDAVLG 137 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHH-TTTCEEEEESCCH--HHHHHHHHTTTTSSGGGGGGEESSHHHHHHH
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHH-HCCCEEEEEeCCH--HHHHHHHhCCCeeccCccceEECcHHHHHHH
Confidence 67888888 6788999999999999999986 6687877775553 44444443222221 2 22334455555554
No 208
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=31.76 E-value=64 Score=27.93 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
.++++.++.. +++|..+|.+|..+.+.+.+.+|.++.+..++
T Consensus 93 ~~~~~~~~~a-k~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 93 KSLIHTAAKA-KSLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHH-HHTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHHHHH-HHCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 5667777665 47788888888887788999999988876554
No 209
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=30.99 E-value=1.2e+02 Score=29.47 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=34.8
Q ss_pred HHHHHhhCCCEeEEeCCCCCcC----------HHHHHHHHHHHHHHHH-hcCcEEEEEecCc---chHHHhccCeEEE
Q psy16346 39 IACELLTNPALMLLDEPTSGLD----------SHAAYSLMSSLKRYAE-KEGKTVVVTVHQP---SSQIFHMFDKLLL 102 (494)
Q Consensus 39 ia~~l~~~p~~lllDEPtsgLD----------~~~~~~i~~~l~~l~~-~~g~tii~~~H~p---~~~i~~~~d~v~l 102 (494)
+..+-..+|.++++||--+=.. ......++..+..+.. ..+..+|.+++.| ...+.+.||+.+.
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~ 213 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIY 213 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEE
T ss_pred HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEE
Confidence 3444446899999999754221 1122333333333211 2356677788876 3456666776554
No 210
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=30.59 E-value=63 Score=27.96 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
.++++.++.. +++|.++|.+|..+.+.+.+.+|.++....|
T Consensus 124 ~~~~~~~~~a-k~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~ 164 (188)
T 1tk9_A 124 PNVLEALKKA-KELNMLCLGLSGKGGGMMNKLCDHNLVVPSD 164 (188)
T ss_dssp HHHHHHHHHH-HHTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred HHHHHHHHHH-HHCCCEEEEEeCCCCcchHHcCCEEEEeCCC
Confidence 4456666654 4678888888888888899999998877654
No 211
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=29.68 E-value=63 Score=27.83 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
.++++.++.. ++.|..+|.+|..+.+.+.+.+|.++....+
T Consensus 110 ~~~~~~~~~a-k~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 110 SEITALIPVL-KRLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp HHHHHHHHHH-HTTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred HHHHHHHHHH-HHCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 5566777665 4678888888888888899999999888654
No 212
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=29.53 E-value=51 Score=28.62 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=30.6
Q ss_pred hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 45 TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 45 ~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
.++.++++||. ..++......+.+.+.+. ..+..+|+++..+.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 46789999995 557777777777777663 23566777777653
No 213
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=29.09 E-value=1e+02 Score=31.17 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q psy16346 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87 (494)
Q Consensus 28 ~lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H 87 (494)
.|+..+++|+.-|...+.+.++.+.|+|. ++. .++...++++.++.|..+|++-+
T Consensus 264 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 264 QLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 58999999999998888888888888764 333 34556666666556767666643
No 214
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=29.01 E-value=68 Score=27.75 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
.++++.++.. ++.|..+|.+|..+.+.+.+.+|.++.+..+.
T Consensus 101 ~~~~~~~~~a-k~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 142 (187)
T 3sho_A 101 RDTVAALAGA-AERGVPTMALTDSSVSPPARIADHVLVAATRG 142 (187)
T ss_dssp HHHHHHHHHH-HHTTCCEEEEESCTTSHHHHHCSEEEECCCCC
T ss_pred HHHHHHHHHH-HHCCCCEEEEeCCCCCcchhhCcEEEEecCCC
Confidence 4567777665 46788888888888888999999998887553
No 215
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=28.90 E-value=17 Score=29.91 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=49.6
Q ss_pred CCCEeEEe-CCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeC-CeEeEeCChhhHHHHHH
Q psy16346 46 NPALMLLD-EPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCN-GQTAYFGDTNKVVDFFH 122 (494)
Q Consensus 46 ~p~~lllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~-G~~~~~G~~~~~~~~f~ 122 (494)
+++.+++| +-.+.+|+.....+.+..+++. +.|..++++.-+| .+.+.+++.-+... |+...+.+.+++++.++
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~--~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~ 122 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELL-RRGIVFAMARVKQ--DLRESLRAASLLDKIGEDHIFMTLPTAVQAFR 122 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHH-TTTEEEEEECCSS--HHHHHHHHCTTHHHHCTTEEESCHHHHHHHHT
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHH-HCCCEEEEEcCCH--HHHHHHHHcCChhhcCcceeECCHHHHHHHHH
Confidence 46789999 6788999999999999999986 6788887776654 44554444222210 22234456666666554
No 216
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=28.77 E-value=35 Score=27.58 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=39.1
Q ss_pred hCCCEeEEe-CCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCe
Q psy16346 45 TNPALMLLD-EPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDK 99 (494)
Q Consensus 45 ~~p~~lllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~ 99 (494)
.+|+.+++| ...+.+|+.....+.+..+++. + |..++++--+| .+.+.+++
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~-~-g~~l~l~~~~~--~v~~~l~~ 95 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLP-E-GCELRVCNVEF--QPLRTMAR 95 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCC-T-TCEEEEECCCH--HHHHHHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHH-C-CCEEEEecCCH--HHHHHHHH
Confidence 678888888 6788999999999999999986 6 88887776554 34444443
No 217
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=28.01 E-value=37 Score=35.36 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=32.1
Q ss_pred HHHHHHHHHHh-hCCC-EeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 34 KKRANIACELL-TNPA-LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 34 rkRv~ia~~l~-~~p~-~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
+|++.+++.+. ..|. ++|..++++|.|.. +.++.+.+..|.|.++.||-
T Consensus 398 ~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 46777777653 4574 66666688886554 33455554568899999984
No 218
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=26.88 E-value=76 Score=27.68 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
.++++.++.. +++|..+|.+|..+.+.+.+.+|.++.+..+
T Consensus 130 ~~~~~~~~~a-k~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 130 PNILAAFREA-KAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHHHHHHHHH-HHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred HHHHHHHHHH-HHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 4566666654 4678888888888777899999988877654
No 219
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=26.57 E-value=54 Score=25.53 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=40.2
Q ss_pred hhCCCEeEEe-CCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeE
Q psy16346 44 LTNPALMLLD-EPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKL 100 (494)
Q Consensus 44 ~~~p~~lllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v 100 (494)
..+|+.+++| .....+|+.....+.+..+++. +.|..+.++.-+| .+.+.+++.
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~--~v~~~l~~~ 95 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFR-REGAEVRIVGMNE--ASETMVDRL 95 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHH-HTTCEEEEESHHH--HHTTCC---
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHH-hCCCEEEEEcCCH--HHHHHHHHh
Confidence 3578888888 5678999999999999999986 6688888776543 556666553
No 220
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=26.16 E-value=58 Score=28.74 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
.++++.++.. ++.|..+|.+|..+.+.+.+.+|.++.+..++
T Consensus 106 ~~~~~~~~~a-k~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 147 (201)
T 3fxa_A 106 GELLNLIPAC-KTKGSTLIGVTENPDSVIAKEADIFFPVSVSK 147 (201)
T ss_dssp HHHHTTHHHH-HHHTCEEEEEESCTTSHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHH-HHcCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 4566666665 46789999999888889999999999887653
No 221
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=25.32 E-value=1.3e+02 Score=29.39 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=33.1
Q ss_pred HHHHHHH-HHHHHhhCCCEeEEeCCCCCcC-----------HHHHHHHHHHHHHHHHhcCcEEEEEecC
Q psy16346 32 GEKKRAN-IACELLTNPALMLLDEPTSGLD-----------SHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88 (494)
Q Consensus 32 GerkRv~-ia~~l~~~p~~lllDEPtsgLD-----------~~~~~~i~~~l~~l~~~~g~tii~~~H~ 88 (494)
+..+.+. +...+...+ ++++||-.+=-+ .....+++..|..++++.|.+++++++.
T Consensus 168 ~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 168 DFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp CHHHHHHHHHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CHHHHHHHHHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 3344444 444444444 999999775211 1223455555555666778998988874
No 222
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=25.07 E-value=86 Score=27.69 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=42.4
Q ss_pred hCCCEeEEeCCCC-CcCHHH----------HHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 45 TNPALMLLDEPTS-GLDSHA----------AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 45 ~~p~~lllDEPts-gLD~~~----------~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
.+.++..++|+.. .+++.. ..++++.++.. ++.|..+|.+|..+.+.+.+.+|.++....+.
T Consensus 72 ~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~a-k~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 72 LGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKA-KDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp TTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHH-HHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred cCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHH-HHCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 3456666666543 233322 35667777665 46788888888888888999999998877654
No 223
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=24.73 E-value=2.8e+02 Score=26.34 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=33.6
Q ss_pred HHHHHhhCCCEeEEeCCCCC------cCHHHHHHH-HHHHHHHH----HhcCcEEEEEecCcc---hHHHhccCeEEE
Q psy16346 39 IACELLTNPALMLLDEPTSG------LDSHAAYSL-MSSLKRYA----EKEGKTVVVTVHQPS---SQIFHMFDKLLL 102 (494)
Q Consensus 39 ia~~l~~~p~~lllDEPtsg------LD~~~~~~i-~~~l~~l~----~~~g~tii~~~H~p~---~~i~~~~d~v~l 102 (494)
+..+-..+|.++++||.-+- -+......+ -+.+..+- ...+..+|.++..|. +.+.+.||+.+.
T Consensus 98 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~ 175 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIY 175 (322)
T ss_dssp HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEE
T ss_pred HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEE
Confidence 34444578999999997532 122222223 33444432 123456677777653 344556665443
No 224
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=24.03 E-value=1.1e+02 Score=26.61 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhc---cCeEEEEeCC
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHM---FDKLLLLCNG 106 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~---~d~v~ll~~G 106 (494)
.++++.++.. +++|.++|.+|..+.+.+.+. +|.++....+
T Consensus 127 ~~~i~~~~~a-k~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 127 ANVIQAIQAA-HDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp HHHHHHHHHH-HHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred HHHHHHHHHH-HHCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 5566777664 577888888888888899999 9988887654
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=23.77 E-value=1.1e+02 Score=25.08 Aligned_cols=43 Identities=2% Similarity=0.070 Sum_probs=31.1
Q ss_pred hCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 45 TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 45 ~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
.+..++++||.- .++...+..+.+.+.+.. ..+..+|++++.+
T Consensus 74 a~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 74 AEGGVLYVGDIA-QYSRNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp TTTSEEEEEECT-TCCHHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred CCCCeEEEeChH-HCCHHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 356899999964 678888888888887653 3355677777654
No 226
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=23.70 E-value=16 Score=31.20 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=24.6
Q ss_pred CCCEeEEeCCCCCc----CHHHHHHHHHHHHHHHHhcCcEEEEEecCc
Q psy16346 46 NPALMLLDEPTSGL----DSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89 (494)
Q Consensus 46 ~p~~lllDEPtsgL----D~~~~~~i~~~l~~l~~~~g~tii~~~H~p 89 (494)
+|.++++||--.=. +......+.+.++.+.+..+..+|++++.+
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~ 162 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVS 162 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHH
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHH
Confidence 57899999953211 022223445555555444456677777654
No 227
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=23.57 E-value=66 Score=31.40 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHHHhhCCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcC-cEEEEEec
Q psy16346 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG-KTVVVTVH 87 (494)
Q Consensus 29 lSgGerkRv~ia~~l~~~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~~H 87 (494)
-++.++++..+++..+.+|+++++.-..+..|... ....+.++.+. ..| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~-~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVD-PSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSC-TTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhc-ccCCCEEEEEeC
Confidence 56788899999999999999777764333444333 44556666665 334 45555553
No 228
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.00 E-value=1.1e+02 Score=27.47 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHh--cCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 65 YSLMSSLKRYAEK--EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 65 ~~i~~~l~~l~~~--~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
.++++.++.. ++ .|..+|.+|..+.+.+.+.+|.++....++
T Consensus 120 ~~~i~~~~~a-k~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~ 163 (220)
T 3etn_A 120 REIVELTQLA-HNLNPGLKFIVITGNPDSPLASESDVCLSTGHPA 163 (220)
T ss_dssp HHHHHHHHHH-HHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred HHHHHHHHHH-HhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 5677777765 46 799999999888889999999999886553
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=22.62 E-value=1.4e+02 Score=27.89 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=35.4
Q ss_pred HHHHHhhCC-CEeEEeCCCCCcCHHHHHHHHHHHHHHHHh---------cCcEEEEEecCcchHHHh
Q psy16346 39 IACELLTNP-ALMLLDEPTSGLDSHAAYSLMSSLKRYAEK---------EGKTVVVTVHQPSSQIFH 95 (494)
Q Consensus 39 ia~~l~~~p-~~lllDEPtsgLD~~~~~~i~~~l~~l~~~---------~g~tii~~~H~p~~~i~~ 95 (494)
+..++...| .++++||. ..+++.....+.+.+.+-.-. .+..+|++++.....+.+
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHh
Confidence 444555444 79999998 678888888888888653200 133467777764433333
No 230
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=22.43 E-value=1.1e+02 Score=29.83 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 64 ~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
..++++.++.. ++.|..+|.+|..|.+.+.+.+|.++.+..|.
T Consensus 104 T~e~l~a~~~a-k~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 146 (344)
T 3fj1_A 104 SPDIVAMTRNA-GRDGALCVALTNDAASPLAGVSAHTIDIHAGP 146 (344)
T ss_dssp CHHHHHHHHHH-HHTTCEEEEEESCTTSHHHHTSSEEEECCCCC
T ss_pred CHHHHHHHHHH-HHCCCcEEEEECCCCChHHHhcCEeeecCCCC
Confidence 46777777765 46799999999999999999999999997765
No 231
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=21.83 E-value=2.9e+02 Score=33.28 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=44.8
Q ss_pred HHHHHHh--hCCCEeEEeCCCCCcCH-------------HHHH---HHHHHHHHHHHhcCcEEEEEecCcc---------
Q psy16346 38 NIACELL--TNPALMLLDEPTSGLDS-------------HAAY---SLMSSLKRYAEKEGKTVVVTVHQPS--------- 90 (494)
Q Consensus 38 ~ia~~l~--~~p~~lllDEPtsgLD~-------------~~~~---~i~~~l~~l~~~~g~tii~~~H~p~--------- 90 (494)
.+++.++ .+|+++++|..+.=... .... +.+..|+.++++.|.+||++.|...
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4555554 57999999998875531 1222 3444444456788999999988522
Q ss_pred ------hHHHhccCeEEEEeCCe
Q psy16346 91 ------SQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 91 ------~~i~~~~d~v~ll~~G~ 107 (494)
..+...+|-++.+...+
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEecc
Confidence 24567788877776433
No 232
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=21.53 E-value=97 Score=27.59 Aligned_cols=41 Identities=7% Similarity=0.082 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCC
Q psy16346 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106 (494)
Q Consensus 65 ~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G 106 (494)
.++++.++.. +++|..+|.+|..+.+.+.+.+|.++.+..|
T Consensus 145 ~~~i~~~~~a-k~~G~~vIaIT~~~~s~La~~aD~~l~~~~g 185 (212)
T 2i2w_A 145 ANVIKAIAAA-REKGMKVITLTGKDGGKMAGTADIEIRVPHF 185 (212)
T ss_dssp HHHHHHHHHH-HHHTCEEEEEEETTCGGGTTCSSEEEEECCC
T ss_pred HHHHHHHHHH-HHCCCeEEEEECCCCCchHHhCCEEEEcCCC
Confidence 4566667664 4668888888887777889999998888765
No 233
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=20.29 E-value=61 Score=31.26 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCCEeEEeCCCCCcCHHHHHHHHHHHHHHHHhcCcEEEEEecCcc
Q psy16346 46 NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90 (494)
Q Consensus 46 ~p~~lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~~H~p~ 90 (494)
+++++++||. ..|+......+.+.+.+. ..+..+|++++++.
T Consensus 119 ~~~vliiDe~-~~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEV-HMLSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECG-GGSCHHHHHHHHHHHHSC--CSSEEEEEEESCGG
T ss_pred CeEEEEEECc-chhcHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 4689999995 457888888787777653 23567788888765
No 234
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=20.27 E-value=1.2e+02 Score=29.32 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCcchHHHhccCeEEEEeCCe
Q psy16346 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107 (494)
Q Consensus 64 ~~~i~~~l~~l~~~~g~tii~~~H~p~~~i~~~~d~v~ll~~G~ 107 (494)
..++++.++.. ++.|..+|.+|..+.+.+.+.+|.++.+..|.
T Consensus 87 T~e~l~a~~~a-k~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 129 (329)
T 3eua_A 87 TPETVKAAAFA-RGKGALTIAMTFKPESPLAQEAQYVAQYDWGD 129 (329)
T ss_dssp CHHHHHHHHHH-HHTTCEEEEEESCTTSHHHHHSSEEEECCCST
T ss_pred CHHHHHHHHHH-HHCCCCEEEEECCCCChHHHhCCEEEEeCCCC
Confidence 35666777664 46799999999999999999999999887664
No 235
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=20.27 E-value=1.5e+02 Score=26.92 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=26.5
Q ss_pred HHHhhCCCEeEEeCCC----------CCcCHHHHHHHHHHHHHHH---HhcCcEEEEEecCcc
Q psy16346 41 CELLTNPALMLLDEPT----------SGLDSHAAYSLMSSLKRYA---EKEGKTVVVTVHQPS 90 (494)
Q Consensus 41 ~~l~~~p~~lllDEPt----------sgLD~~~~~~i~~~l~~l~---~~~g~tii~~~H~p~ 90 (494)
.+.-..|.++++||-- .+-+......+.+.++.+- ...+..+|.++++|.
T Consensus 99 ~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 99 QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp HHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 3334567899999961 1111122233334444432 123567888888874
Done!