RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16346
(494 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 304 bits (780), Expect = 1e-96
Identities = 163/519 (31%), Positives = 251/519 (48%), Gaps = 75/519 (14%)
Query: 4 VDHIINVLDLANCQHTIIGDY-MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSH 62
VD ++ L L C +T IG +GLSGGE+KR A ELLT+P L+ DEPTSGLDS
Sbjct: 141 VDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSF 200
Query: 63 AAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
AYS++ LK A+K GKT++ T+HQPSS++F +FDK++L+ G+ AY G ++ V FF
Sbjct: 201 MAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS 259
Query: 123 NIGLTWNKSKAAKKCERRSSWLPKRRGFTQAIPKNCNHNTFPMPTLSEEEECKQLCLDS- 181
++G P+N N F + L+ + +
Sbjct: 260 DLGHP--------------------------CPENYNPADFYVQVLAVIPGSENESRERI 293
Query: 182 ----QSHASSSVSSSYDDMSWQW-------------------PTSFWTQFKVLSQRNFQE 218
S A S + + W S+WTQF L +R++
Sbjct: 294 EKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLS 353
Query: 219 A-RPRMLSTLNWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALA 277
R +L + +QT+ I+ GL++ T++ + +I G +F T F +
Sbjct: 354 VLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVIN 413
Query: 278 SFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSP-TVFI 336
F E V +E SG YR+SAY+LAK + ELPL I LPA++ I+Y M+GL+S T F+
Sbjct: 414 VFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFL 473
Query: 337 TLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGG 396
T L + L + VA S G+ + +C S+ VG + L LFGG
Sbjct: 474 TFLFLVTLVANVATSFGYLI-SCAFSSTSMALTVGP----------PFVIPFL---LFGG 519
Query: 397 -YLATN-IPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACANSTYIPVDA 454
++ ++ IP + KW+ YLS Y + + I ++S+ I+C + + C +S +
Sbjct: 520 FFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS----GEV 575
Query: 455 ILESQG-SSLPLWCNTLILIGFLVFFRTLGYIVLRYFRR 492
ILE+ + L+ + + L+ + FFR L Y LR R
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIR 614
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 257 bits (658), Expect = 2e-78
Identities = 152/496 (30%), Positives = 260/496 (52%), Gaps = 35/496 (7%)
Query: 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA 64
+ +I+ L L C++TIIG+ RG+SGGE+KR +IA E+L NP+L++LDEPTSGLD+ AA
Sbjct: 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAA 242
Query: 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNI 124
Y L+ +L A+K GKT+V ++HQPSS+++ MFD +L+L G+ +FG + + +F ++
Sbjct: 243 YRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301
Query: 125 GLTWNKS-KAAKKCERRSSWLPKRRGFTQAIPKN------CNHNTFPMPTLSEEEECKQL 177
G + + A ++ + + G ++ N ++NT P + E
Sbjct: 302 GFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHF 361
Query: 178 CLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEARPRMLSTLNWVQTIGLGI 237
+ S+ + + ++++ QF +L QR+ +E + +TL Q I +
Sbjct: 362 PQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAAL 421
Query: 238 MAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRL 297
+AGL+W+ + + D G +FF + FW +F F ++ FP ER + KER SG Y L
Sbjct: 422 LAGLMWWHSDFRD--VQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTL 479
Query: 298 SAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTV-FITLLGFLLLNSIVAQSVGFFV 356
S+Y++A++VG+LP+ + LP ++ ++Y M GL+ F+ L LL +V+Q +G +
Sbjct: 480 SSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLAL 539
Query: 357 GACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLATNIPYWLKWMQYLSMVH 416
GA MD + TI + LA L GG+ +P + W++Y+S
Sbjct: 540 GAAIMDAKKAS--------------TIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTF 585
Query: 417 YAYQNMQIVEFSEGLPIQ----CATQSKFDACANSTYIPVDAILESQGSSLPLWCNTLIL 472
Y+Y+ + V++ EG I C+ D A+ ++ D + + +L
Sbjct: 586 YSYRLLINVQYGEGKRISSLLGCSLPHGSDR-ASCKFVEEDV-----AGQISPATSVSVL 639
Query: 473 IGFLVFFRTLGYIVLR 488
I V +R L Y+ LR
Sbjct: 640 IFMFVGYRLLAYLALR 655
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 169 bits (430), Expect = 4e-45
Identities = 128/549 (23%), Positives = 219/549 (39%), Gaps = 89/549 (16%)
Query: 2 TYVDHIINV----LDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTS 57
Y HI +V L++ ++T +G+ RG+SGGE+KR +IA L + D T
Sbjct: 179 EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATR 238
Query: 58 GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
GLDS A + +LK A T +V ++Q S + +FDK+++L G YFG +K
Sbjct: 239 GLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298
Query: 118 VDFFHNIGLTWNKSKAAKKCERRSS---WL-----PKRR----GFTQAIPKNCNH----- 160
+F +G KC R + +L P R G+ + +P+
Sbjct: 299 KQYFEKMGF---------KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYW 349
Query: 161 NTFPM---------PTLSEEEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVL 211
P L E +SH + + S + SF Q K
Sbjct: 350 RNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRP--SSPYTVSFSMQVKYC 407
Query: 212 SQRNFQEARPRMLSTL-NWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLF 270
RNF + TL I + ++ +++ LP+ + G +FF+ F F
Sbjct: 408 LARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNA-F 466
Query: 271 AHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQ 330
+ +AS R ++ K R Y SA +A ++ E+P I V+++I Y M+ +
Sbjct: 467 SSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFR 526
Query: 331 -SPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFF--VGACCMDMQVSITISALY 387
+ F L L F+ M F +GA + ++T +A+
Sbjct: 527 RTAGRFFFYLLIL------------FICTLAMS----HLFRSIGAVTKTLSEAMTPAAIL 570
Query: 388 TLATQLFGGYL--ATNIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACA 445
LA ++ G+ ++ W KW+ Y++ + YA++++ + EF G +C+ +
Sbjct: 571 LLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEF-HGRRFECSQY--VPSGG 627
Query: 446 NSTYIPVDAILESQGSSLP---------------------LWCNTLILIGFLVFFRTLGY 484
+ V + + + P W N I+IGF VFF + Y
Sbjct: 628 GYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFV-Y 686
Query: 485 IVLRYFRRP 493
I+L F +
Sbjct: 687 ILLTEFNKG 695
Score = 149 bits (378), Expect = 2e-38
Identities = 132/545 (24%), Positives = 217/545 (39%), Gaps = 78/545 (14%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALML-LDEPTSGL 59
M YV+ +I +L++ + ++G GL+ ++KR I EL+ P L+L LDEPTSGL
Sbjct: 875 MEYVEEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933
Query: 60 DSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG-QTAYFGD----T 114
DS A+S+ +++ A G+ ++ T+HQPS+ +F FD+LLLL G QT YFGD +
Sbjct: 934 DSQTAWSICKLMRKLA-DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENS 992
Query: 115 NKVVDFFHNIGLTWNKSKAAKKCERR---SSWLPKRRGFTQAIPKNCNHNTFPMPTLSEE 171
+ ++++F G A KC + W+ + G A + N + + S E
Sbjct: 993 HTIINYFEKHG--------APKCPEDANPAEWMLEVIG--AAPGAHANQDYHEVWRNSSE 1042
Query: 172 EECKQLCLDSQSHASSSVSSSYD-DMSWQWPTSFWTQFKVLSQRNFQEARPRMLSTL--N 228
+ + LD S D D ++ S W QFK++ R FQ+ R L
Sbjct: 1043 YQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYW-RTPDYLYSK 1101
Query: 229 WVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFSTTFWMLFAHF--GALASFPPEREVI 286
+ TI + G +F++ + L +Q MF +LF L F +R++
Sbjct: 1102 FFLTIFAALFIGFTFFKVGTS---LQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLY 1158
Query: 287 N-KERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQ---SPTVFITLLGFL 342
+ER S + A+ A++ E+P + ++ I Y +G S T + G L
Sbjct: 1159 EVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVL 1218
Query: 343 LLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLAT-- 400
FF+ + + ++ S L+T+ F G LA
Sbjct: 1219 FWLLSTM----FFLYFSTLGQ----MVISFNPNADNAAVLASLLFTMCL-SFCGVLAPPS 1269
Query: 401 NIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCA------------------------ 436
+P + +M S Y Q + + +P+ C
Sbjct: 1270 RMPGFWIFMYRCSPFTYLVQAL-LSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLE 1328
Query: 437 -------TQSKFDACANSTYIPVDAILESQGSSLP-LWCNTLILIGFLVFFRTLGYIVLR 488
+ D+C+ Y + LE S W N I I F+ F
Sbjct: 1329 NAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFNIIATVFFYW 1388
Query: 489 YFRRP 493
R P
Sbjct: 1389 LARVP 1393
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 151 bits (385), Expect = 2e-43
Identities = 52/86 (60%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
RGLSGGE+KR +IA EL++NP+L+ LDEPTSGLDS +A +MS L+R A G+T++ ++
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSI 168
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFG 112
HQPSS+IF +FDKLLLL G+ YFG
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 143 bits (362), Expect = 9e-40
Identities = 45/103 (43%), Positives = 73/103 (70%), Gaps = 1/103 (0%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+ L + T IG + +G+SGGE++R +IA +LL +P +++LDEPTSGLDS A +L+S
Sbjct: 125 DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+L + A + + V++T+HQP S +F +FD++LLL +G+ Y G
Sbjct: 185 TLSQLA-RRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 121 bits (307), Expect = 2e-32
Identities = 45/87 (51%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
RGLS ++KR I EL P+++ LDEPTSGLDS AAY+++ LK+ A+ G+ ++ T+
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTI 165
Query: 87 HQPSSQIFHMFDKLLLLC-NGQTAYFG 112
HQPS+ IF FD+LLLL G+T YFG
Sbjct: 166 HQPSASIFEKFDRLLLLKRGGKTVYFG 192
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 121 bits (306), Expect = 4e-32
Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 20/226 (8%)
Query: 206 TQFKVLSQRNFQEA--RPRMLSTLNWVQTIGLGIMAGLLWFQLPRTEEALHDIQGWMFFS 263
TQ K L +R F P + +Q + + ++ G ++ L + L + G +FFS
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGL-NRPGLLFFS 59
Query: 264 TTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLIS 323
F + G F ER V+ +E S Y SAY LAK++ ELP+++ ++ LI
Sbjct: 60 ILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119
Query: 324 YPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITI 383
Y M+GL F+ LL LL +G F+ A + + I
Sbjct: 120 YFMVGLPVSRFFLFLLVLLLT---------ALA------ASGLGLFIAALAPSFEDASQI 164
Query: 384 SALYTLATQLFGGYLA--TNIPYWLKWMQYLSMVHYAYQNMQIVEF 427
L L L G+ ++P WL+W+ YL+ + YA + ++ EF
Sbjct: 165 GPLLLLPLLLLSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 121 bits (304), Expect = 7e-29
Identities = 121/449 (26%), Positives = 197/449 (43%), Gaps = 93/449 (20%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
M +VD ++ +++L N + I+G GLS ++KR IA EL+ NP+++ +DEPTSGLD
Sbjct: 992 MMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
Query: 61 SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLC-NGQTAYFG----DTN 115
+ AA +M +++ + G+TVV T+HQPS IF FD+LLL+ GQ Y G +++
Sbjct: 1052 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSH 1110
Query: 116 KVVDFFHNIGLTWNKSKAAKKCERRSSWLPKRRGFTQAIPKNCNHNTFPMPTLSEEEECK 175
K++++F I +PK I + N T+ + S E K
Sbjct: 1111 KIIEYFEAI-----------------PGVPK-------IKEKYNPATWMLEVSSLAAEVK 1146
Query: 176 QLCLDSQSHASSS-------------------VSSSYDDMSWQWPTSFWTQFK-VLSQRN 215
L +D H SS S Y + Q+ S W QFK L ++
Sbjct: 1147 -LGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLY--FATQYSQSTWGQFKSCLWKQW 1203
Query: 216 FQEARPRMLSTLNWVQTIGLGIMAGLLWFQLPRTEEALHD---IQGWMFFSTTFWMLFAH 272
+ R + + + T+ +M G +++++ +D + G M+ + +LF
Sbjct: 1204 WTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAA----VLFVG 1259
Query: 273 FGALASFPP----EREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLG 328
++ P ER V +ER +G Y Y +A++V E+P + Y LI Y M+
Sbjct: 1260 INNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319
Query: 329 LQSPT------VFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQV-SI 381
+ FI+ FL + G M +V + + QV +I
Sbjct: 1320 FEWTAAKFFWFYFISFFSFLYFT---------YYG-----MMTV-----SLTPNQQVAAI 1360
Query: 382 TISALYTLATQLFGGYLA--TNIPYWLKW 408
+A Y L LF G+ IP W W
Sbjct: 1361 FAAAFYGL-FNLFSGFFIPRPKIPKWWVW 1388
Score = 108 bits (271), Expect = 8e-25
Identities = 128/524 (24%), Positives = 212/524 (40%), Gaps = 78/524 (14%)
Query: 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALML-LDEPTSGLDSHA 63
D+ + +L L C+ TI+GD M RG+SGG+KKR E++ P L +DE ++GLDS
Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKTLFMDEISTGLDSST 371
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
Y ++ L++ TV++++ QP+ + F +FD ++LL GQ Y G + +++FF +
Sbjct: 372 TYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFES 431
Query: 124 IGLTWNKSKAAKKCERRSSWLPKRRG---FTQAIP-----------KNCNHNTFPMPTLS 169
G KC P+R+G F Q + +N + + +
Sbjct: 432 CGF---------KC-------PERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFA 475
Query: 170 E-----------EEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQE 218
E E E SQSH ++ V S Y + + W + +L +RN
Sbjct: 476 ERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRN--- 532
Query: 219 ARPRMLSTLNWVQTIGLGIMAGLLWFQL---PRTEEALHDIQGWMFFSTTFWMLFAHFGA 275
+ VQ I + +A ++ + R EE G + FS M F F
Sbjct: 533 ---AFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINM-FNGFAE 588
Query: 276 LASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVF 335
LA V K+R + + L + +P++I V+ +I+Y +G +P
Sbjct: 589 LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGF-APEAS 647
Query: 336 ITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFG 395
LL+ I + G F + + C M ++ T AL L L G
Sbjct: 648 RFFKQLLLVFLIQQMAAGIFR------------LIASVCRTMIIANTGGALVLLLVFLLG 695
Query: 396 GYL--ATNIPYWLKWMQYLSMVHYAYQNMQIVEFSEGLPIQCATQSKFDACANSTYIPVD 453
G++ IP W +W ++S + Y + + + E + A NST +
Sbjct: 696 GFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKM------ASDNSTRLG-T 748
Query: 454 AILESQGSSLP---LWCNTLILIGFLVFFRTLGYIVLRYFRRPG 494
A+L W L+GF + F L + L Y G
Sbjct: 749 AVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLG 792
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 111 bits (279), Expect = 2e-27
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSH 62
++ ++ + L + + + R LSGG K+R +IA LL +P L++LDEPTSGLD
Sbjct: 116 RIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 63 AAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
+ + L+ A++ G T++++ H + D++++L +G+ G ++ + F
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFG 229
Query: 123 NIG 125
G
Sbjct: 230 GKG 232
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 99.3 bits (248), Expect = 4e-24
Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 14 ANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKR 73
C+ G+ RG+SGGE+KR +IA L++ +++ D T GLDS A ++ ++
Sbjct: 108 LRCK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT 163
Query: 74 YAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
A+ T V+++Q S +I+ +FDK+L+L G+ Y+G
Sbjct: 164 MADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 86.5 bits (215), Expect = 4e-20
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A LL NP L+LLDEPTSGLD + L+ L+ AE EG+TV++ H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHD 139
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
P D++++L +G+
Sbjct: 140 P-ELAELAADRVIVLKDGK 157
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 84.0 bits (209), Expect = 5e-19
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R +A L P ++LLDEPTS LD L+ L+R A + GKTVV+ +H
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ D+++LL +G+ G
Sbjct: 158 L-NLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 81.9 bits (203), Expect = 1e-17
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 8 INVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL 67
+ + DL + Q IG+ LSGG+K+R +A L NP L+LLDEP +G+D +
Sbjct: 127 VGMEDLRDRQ---IGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEI 178
Query: 68 MSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
LK +EGKTV++ H + FD+++ L N G +V
Sbjct: 179 YDLLKELR-QEGKTVLMVTHDL-GLVMAYFDRVICL-NRHLIASGPPEEV 225
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 79.0 bits (196), Expect = 6e-17
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L +P ++LLDEPT+GLD L+ LK+ EGKT+++ H
Sbjct: 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHD 193
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ + D++++L +G+
Sbjct: 194 L-DLLLELADRVIVLEDGK 211
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 77.8 bits (193), Expect = 7e-17
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG K+R +A LL +P L++LDEPTSGLD + L+ KEGKT++++ H
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK-KEGKTILLSSHI 154
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ + D++ +L NG+
Sbjct: 155 L-EEAERLCDRVAILNNGR 172
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 79.9 bits (198), Expect = 7e-17
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R IA L ++LLDEPTS LD ++ L+ ++G TVV+ +H
Sbjct: 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+ D L+LL +G+ G +V+
Sbjct: 199 L-NLAARYADHLILLKDGKIVAQGTPEEVL 227
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 78.5 bits (194), Expect = 1e-16
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ + + R LSGG+K+R IA L P ++LLDEPT+GLD L+ LK+ E+
Sbjct: 128 LEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE 187
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLC-------NGQTAYFGDTNKVVD 119
GKT+++ H + +L +G+ GD ++ +
Sbjct: 188 GGKTIIIVTHD--------LELVLEYADRVVVLDDGKILADGDPAEIFN 228
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 78.3 bits (194), Expect = 1e-16
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 21 IGDYMKRG---LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+GD + LSGG+++R IA L +P ++L DEPT LDS +M L+ ++
Sbjct: 130 LGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE 189
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
G T+VV H P ++ D+++ L +G+
Sbjct: 190 AGTTIVVVTHDP--ELAEYADRIIELRDGK 217
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 76.8 bits (190), Expect = 2e-16
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
GLSGG+++R +A L +P ++LLDEPTS LD + + LK + G TVV+ H
Sbjct: 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159
Query: 88 QPSSQIFHMFDKLLLLCNGQ 107
+ + D++++L +G+
Sbjct: 160 DL-DEAARLADRVVVLRDGK 178
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 74.0 bits (183), Expect = 1e-15
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA LL +P +++LDE TS LD ++ +L+ A +GKTV+V H+
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHR 154
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
S+ D++++L +G+
Sbjct: 155 LST--IRDADRIIVLDDGR 171
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 74.9 bits (185), Expect = 3e-15
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L+ NP ++L DEPT LDS A ++ L+ ++ GKT+++ H
Sbjct: 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
P ++ D+++ L +G+
Sbjct: 203 P--ELAKYADRVIELKDGK 219
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 71.4 bits (176), Expect = 3e-14
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A L+ +P L+LLDEP +G+D + L+ EG T++V H
Sbjct: 133 LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHD 191
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ FD++LLL N G
Sbjct: 192 L-GLVLEYFDRVLLL-NRTVVASG 213
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 71.1 bits (175), Expect = 5e-14
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L+ P L+L DEP + LD ++ +M LKR +EG TV+V++HQ
Sbjct: 145 LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV-VDFFHNI 124
+ D+++ L +G+ + G ++ + I
Sbjct: 205 VDLAREY-ADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 69.6 bits (171), Expect = 2e-13
Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 9/93 (9%)
Query: 19 TIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
TI+G+ RG LSGGEK+R IA +L NP ++LLDE TS LD+H + ++L+ +
Sbjct: 129 TIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS- 184
Query: 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTA 109
+G+T +V H+ S+ I + DK+++L +G+
Sbjct: 185 -KGRTTIVIAHRLST-IVNA-DKIIVLKDGRIV 214
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 69.1 bits (170), Expect = 2e-13
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 14/113 (12%)
Query: 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD-- 60
VD ++ +++L + IG LSGG ++R IA L+ +P+++++DEPT+GLD
Sbjct: 110 RVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 61 -SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+L+S L E + V+++ H + + +++ +L G+ + G
Sbjct: 165 ERIRFRNLLSEL-----GEDRIVILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 69.5 bits (171), Expect = 2e-13
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG KKR +A L +P L+L DEPT+GLD A+ + ++ ++ G T
Sbjct: 131 DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTS 190
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
++ H + F + D++ +L +G+ G
Sbjct: 191 IMVTHDLDT-AFAIADRIAVLYDGKIVAEG 219
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 68.9 bits (169), Expect = 2e-13
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGEK+R +A L P L+LLDEP S LD L+ LK+ + V+ H
Sbjct: 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190
Query: 88 QPSSQIFHMFDKLLLLCNGQTAYFG 112
S+ ++ D+++++ +G+ Y G
Sbjct: 191 DL-SEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 68.4 bits (168), Expect = 2e-13
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA LL+ L++ DEPTSGLD + ++ A +GK V+V H
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA-AQGKAVIVITHD 185
Query: 89 P------SSQIFHMFD 98
++ + +
Sbjct: 186 YEFLAKVCDRVLLLAN 201
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 69.6 bits (171), Expect = 3e-13
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L+ P ++L DEP + LD +A +M LK +++G TV+V +HQ
Sbjct: 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 68.5 bits (168), Expect = 4e-13
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R IA L+ NP ++LLDEP S LD L LK+ KE V+ V
Sbjct: 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTH 188
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+ + + DK+ ++ NG+ G +V
Sbjct: 189 DFEEAWALADKVAIMLNGKLIQVGKPEEV 217
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 71.0 bits (174), Expect = 4e-13
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V ++++++ H I ++ R LSGGEK+R +A +L P L L DEPT LD
Sbjct: 146 VGRAVDLIEMVQLSHRIT--HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT 203
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFF 121
A + ++L+ + G ++V+T H P I + DK + L NG+ G ++VV F
Sbjct: 204 AKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
Score = 41.3 bits (97), Expect = 0.001
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 21 IGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80
I D LS GE+ R +A L+ P +++LDEPT +D + S+ + E+ +
Sbjct: 420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ 479
Query: 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
T ++ H + + D+ L+ +G+ GD ++V
Sbjct: 480 TFIIVSHD-MDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 66.8 bits (164), Expect = 1e-12
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ + R LSGG+++R +A L P+L+LLDEP S LD+ L LK +
Sbjct: 120 LEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
G T + H + + D++ ++ G+ G
Sbjct: 180 LGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 69.6 bits (171), Expect = 1e-12
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 19 TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
T IG+ LSGG+++R +A L +P L++LDEP S LDS +L +++ A+
Sbjct: 464 TRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA-AKAR 521
Query: 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
G TVVV H+PS DK+L+L +G+ A FG +V+
Sbjct: 522 GGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVL 559
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 68.2 bits (167), Expect = 1e-12
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
+D + +LDL + +++ LS G++ RA +A LL P ++ LDEPT GLD +A
Sbjct: 137 LDFLTEILDL----EGFLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA 191
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
++ LK Y E+ TV++T H I + D++LL+ GQ + G ++ + F
Sbjct: 192 QANIREFLKEYNEERQATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250
Query: 124 I 124
Sbjct: 251 Y 251
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 66.9 bits (164), Expect = 1e-12
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P L+L DEP + LD + +M LKR +++G TV++ +HQ
Sbjct: 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205
Query: 89 PSSQIFHMF-DKLLLLCNGQTAYFGDTNKVVD 119
+ + D+++ L G+ + G +++ D
Sbjct: 206 VD--LAKKYADRIVGLKAGEIVFDGAPSELDD 235
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 66.4 bits (163), Expect = 2e-12
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ ++ VL L + + LSGG K++ ++A L+ P+++LLDEPTSGLD +
Sbjct: 114 VELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
++ + ++G+++++T H
Sbjct: 169 RRAIWDLILE--VRKGRSIILTTH 190
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 68.1 bits (167), Expect = 4e-12
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+L L + T+IG LSGG+++R +A L +P L++LDEP S LD +L +
Sbjct: 437 ILRLPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
++K + G TVVV H+PS + DK+L+L +G+ A FG
Sbjct: 496 AIKA-LKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFG 535
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 67.0 bits (164), Expect = 5e-12
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA 64
++ L +H + D LSGGEK+R I LLT P L+L+DEP + LD
Sbjct: 107 AQFDQLVALLGIEHLL--DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164
Query: 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
++ L+R E ++ V ++ + D++++L NG+ G +V
Sbjct: 165 REILPYLERLR-DEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 65.7 bits (161), Expect = 5e-12
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 20 IIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
D LSGG +KR +A + +P L+ LDEPTSGLD +A + ++ + G
Sbjct: 137 AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG 196
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
TV++ H S + + D++ +L +G+ G
Sbjct: 197 LTVIMVTHDLDS-LLTIADRVAVLADGKVIAEG 228
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 67.6 bits (166), Expect = 5e-12
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG ++R IA L P L++ DEPT+ LD ++ LK + G V+ H
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ + D+++++ G+ G T +++
Sbjct: 215 LGV-VAELADRVVVMYKGEIVETGPTEEILS 244
Score = 55.7 bits (135), Expect = 3e-08
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 23 DYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
+++ R LSGG+++R IA L P L++LDEP S LD +++ LK E+ G
Sbjct: 421 EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG 480
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120
T + H + + ++ D++ ++ +G+ G T KV +
Sbjct: 481 LTYLFISH-DLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 65.5 bits (160), Expect = 6e-12
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+KKR IA L P +++LDEPTSGLD A +M L KEG T++++ H
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTH 195
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 64.6 bits (158), Expect = 7e-12
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
DY LSGG+K+R IA L+ P L+L DEPT+ LDS + ++ +++ A ++G T+
Sbjct: 136 DYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTI 195
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQ 107
++ H +I + D+++ + +G+
Sbjct: 196 LIVTHDN--RILDVADRIVHMEDGK 218
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 64.7 bits (158), Expect = 8e-12
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
+D + +LDL T + R LS G++ RA IA LL P ++ LDEPT GLD A
Sbjct: 134 LDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
++ + LK Y + G TV++T H
Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSH 212
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 63.8 bits (156), Expect = 1e-11
Identities = 27/81 (33%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
RGLSGG+++ +A LL +P ++LLDEPTS +D ++ L L++ KT+++
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL--GDKTLIIIT 196
Query: 87 HQPSSQIFHMFDKLLLLCNGQ 107
H+PS + + D+++++ +G+
Sbjct: 197 HRPS--LLDLVDRIIVMDSGR 215
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 63.5 bits (155), Expect = 2e-11
Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ ++KR LSGG+++R +A L+ ++LLDEP S LD +++ + + ++
Sbjct: 119 LAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
T+++ H P + D+++ L NG+ A G T +++
Sbjct: 179 RKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELLS 219
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 64.7 bits (158), Expect = 2e-11
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 21 IGDYMKRG---LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
IG + R LSGGEK+R I LL++P L+L+DEP + LD Y ++ L+R +
Sbjct: 121 IGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE 180
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
G ++ H ++ + D++++L +G+ A G
Sbjct: 181 FGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAG 214
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 61.9 bits (151), Expect = 2e-11
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 19 TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
T + + + R SGGE++R +A LL + ++LLDEPT GLD L+S + + +
Sbjct: 89 TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI--FEVLK 146
Query: 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQT 108
KT++ H + DK+L L NG+
Sbjct: 147 DKTLIWITHHLTG--IEHMDKILFLENGKI 174
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 65.4 bits (160), Expect = 2e-11
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 18 HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
T IG+ GLSGG+ +R +A L + L+LLDEPT+ LD+ ++ +L+ A
Sbjct: 449 DTPIGEG-GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-- 505
Query: 78 EGKTVVVTVHQPSS 91
+G+TV++ H+ +
Sbjct: 506 QGRTVLLVTHRLAL 519
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 65.4 bits (160), Expect = 3e-11
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 14/110 (12%)
Query: 7 IINVLDLANCQ---------HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTS 57
II LD A T+IG+ GLSGG+ +R +A LL+ +L+LLDEPT+
Sbjct: 427 IIAALDQAGLLEFVPKPDGLDTVIGEG-GAGLSGGQAQRLALARALLSPASLLLLDEPTA 485
Query: 58 GLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
LD+ ++ +L+ A + KTV+V H+ D++++L NG+
Sbjct: 486 HLDAETEQIILQALQELA--KQKTVLVITHRLED-AADA-DRIVVLDNGR 531
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 64.2 bits (157), Expect = 4e-11
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ + R LSGG+++R +A L+ P ++LLDEP S LD+ + LK +
Sbjct: 126 LEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE 185
Query: 78 EGKTVVVTVHQP------SSQIFHM 96
G T V H S +I M
Sbjct: 186 LGITFVYVTHDQEEALAMSDRIAVM 210
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 61.7 bits (150), Expect = 4e-11
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGEKKR IA + P ++LLDEPT+GLD +++ L+R EG TVV++ H
Sbjct: 128 LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTH 185
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 64.9 bits (159), Expect = 4e-11
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 5 DHIINVLDLANCQ----------HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDE 54
+ II LA T +G+ LSGG+++R +A LL+ P ++LLDE
Sbjct: 577 EEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDE 635
Query: 55 PTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
TS LD ++ +L + +G+TV++ H+ S+ D++++L G+
Sbjct: 636 ATSALDPETEAIILQNLLQI--LQGRTVIIIAHRLST--IRSADRIIVLDQGK 684
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 64.7 bits (158), Expect = 4e-11
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+ + +T +G+ R LSGGE++R +A LL + L LLDEPT GLD +++
Sbjct: 457 LESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLA 515
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
L + EGKT+++ H+ D++++L NG+ G ++
Sbjct: 516 LL--FEHAEGKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAEL 559
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 61.9 bits (151), Expect = 7e-11
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 9/92 (9%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
T+IG+ RG LSGG+++R IA LL +P +++LDE TS LD+ + + ++L+R
Sbjct: 129 DTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM 185
Query: 76 EKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
+ +T V H+ S+ I + D++++L +G+
Sbjct: 186 --KNRTTFVIAHRLST-IENA-DRIVVLEDGK 213
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 64.1 bits (157), Expect = 7e-11
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R LSGG+++ +A LL +P ++LLDEPTS +D+ + LKR+ GKT+V+
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVT 657
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
H+ S + + D+++++ NG+ G ++V++
Sbjct: 658 HRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 61.1 bits (149), Expect = 8e-11
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R IA ++ +P L+L DEPT LD + ++ LKR K G TV+V H
Sbjct: 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIVATHD 196
Query: 89 PS 90
S
Sbjct: 197 LS 198
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 62.6 bits (153), Expect = 1e-10
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGEK+R I LLT P L+L+DEP + LD L+ L+R A +E ++ V
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA-REINIPILYVSH 187
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+I + D++++L G+ FG +V
Sbjct: 188 SLDEILRLADRVVVLEQGKVKAFGPLEEV 216
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 58.1 bits (141), Expect = 1e-10
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTS 57
L+ + + + LSGG+K+R IA LL P L+LLDEPT+
Sbjct: 68 ARAEEALERVGLPDFLDREPVG-TLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 60.9 bits (148), Expect = 1e-10
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ I ++ L G LSGG K+R IA L P ++LLDEP LD+
Sbjct: 95 VEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+L L + E+ TV++ H + + D++++L NG A G
Sbjct: 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALL-LSDRVVMLTNGPAANIG 197
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 60.3 bits (147), Expect = 2e-10
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R +A +L P L+L DEPT LD ++ L EGKT+++ H
Sbjct: 135 LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN-DEGKTIIIVTHD 193
Query: 89 PSSQIFHMFDKLLLL 103
P + D+++ L
Sbjct: 194 PE--VAKQADRVIEL 206
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 61.8 bits (150), Expect = 2e-10
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 23 DYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
Y++R GLSGG+K+R IA L P +++ DEPT+GLD + +M + A+
Sbjct: 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANN 226
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113
KTV V H + + D+++++ G+ G
Sbjct: 227 KTVFVITHT-MEHVLEVADEVIVMDKGKILKTGT 259
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 61.1 bits (149), Expect = 2e-10
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 23 DYMKR----GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
++++R G SGGEKKR I LL P L +LDEP SGLD A + + E+
Sbjct: 135 EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEG 194
Query: 79 GKTVVVTVHQPSSQIFHMF--DKLLLLCNGQTAYFGDTNKVVDFFHNIGLTW 128
+++T +Q ++ DK+ +L +G+ GD ++ + G W
Sbjct: 195 RGVLIITHYQ---RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 61.9 bits (151), Expect = 2e-10
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L NP ++L DE TS LD S++ LK + G T+V+ H+
Sbjct: 142 LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE 201
Query: 89 PSSQIFHMF-DKLLLLCNGQ 107
++ D++ +L G+
Sbjct: 202 M--EVVKRICDRVAVLDQGR 219
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 60.7 bits (148), Expect = 2e-10
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L+ P L++LDEPTS LD +++ L ++ G T + H
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
+ + HM D++ ++ NGQ G T +++ +
Sbjct: 202 -LALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 60.6 bits (148), Expect = 2e-10
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV-VTVH 87
LSGG ++R IA L T P L+LLDEP LD+ L L R E+ KTV+ VT H
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT-H 189
Query: 88 QPSSQIFHMFDKLLLLCNG 106
++ + D++++L N
Sbjct: 190 DVDEAVY-LADRVVVLSNR 207
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 59.2 bits (144), Expect = 3e-10
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A L NP +++LDEP S LD +L ++ + G T +V H+
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA-LKAAGATRIVIAHR 155
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
P D++L+L +G+
Sbjct: 156 PE--TLASADRILVLEDGR 172
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 60.2 bits (146), Expect = 3e-10
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 19 TIIG---DYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK 72
+I+G +Y R LSGGE +R +IA L NP ++LLDEPTS LD + + +
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 73 RYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
+ K TV+ H Q + D L G + T DFF N
Sbjct: 176 KLKNKMNLTVIWITHN-MEQAKRIGDYTAFLNKGILVEYAKTY---DFFTN 222
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 61.1 bits (148), Expect = 3e-10
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG K+R +A L+ +P L++LDEPT+GLD HA + + L+ + GKT+++T H
Sbjct: 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTH 193
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 62.0 bits (151), Expect = 3e-10
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 18 HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
T++G+ R LSGGE++R +A LL + ++LLDEPT LD+ A L+ L A
Sbjct: 462 DTVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAAL 518
Query: 78 EGKTVVVTVHQP 89
G+TVV+ H
Sbjct: 519 SGRTVVLITHHL 530
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 62.1 bits (151), Expect = 4e-10
Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+ +L + TI+G+ LSGG+++R IA LL NP +++LDE TS LD+ +
Sbjct: 448 IANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+LK+ +G+T ++ H+ S+ D++++L NG+ G
Sbjct: 507 ALKK--LLKGRTTLIIAHRLST--IKNADRIIVLDNGRIVERG 545
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 59.5 bits (144), Expect = 4e-10
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGEK+R + L P ++LLDE TS LD ++ + RY ++ V+ H
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD 193
Query: 89 PSSQIFHMFDKLLLLCNG 106
I H DK++ L G
Sbjct: 194 KDQAIRH-ADKVITLQPG 210
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 59.2 bits (144), Expect = 4e-10
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
+D +++V+ L + + + S G K+R IA LL NP L++LDEPT+GLD
Sbjct: 107 IDEVLDVVGLKDSAKKKVKGF-----SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAY 110
L + +G TV+++ H S+I + D++ ++ G+
Sbjct: 162 IKELRELILSLR-DQGITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 60.6 bits (147), Expect = 5e-10
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG K+R +A L+ +P L++LDEPT+GLD HA + + L+ + GKT+++T H
Sbjct: 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTH 230
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 59.1 bits (144), Expect = 6e-10
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 9/100 (9%)
Query: 10 VLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL 67
++ L + T++G+ RG LSGG+K+R IA LL NP ++LLDE TS LD+ + +
Sbjct: 122 IMSLPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 68 MSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
+L R +G+T +V H+ S+ I + D + +L NGQ
Sbjct: 179 QEALDRA--MKGRTTIVIAHRLST-IRNA-DLIAVLQNGQ 214
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 59.2 bits (144), Expect = 6e-10
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE-GKTVVVTVH 87
LS GE++R IA L+ +P L++LDEP GLD A L++ L+ A ++ H
Sbjct: 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
Query: 88 QPSSQIFHMFDKLLLLCNGQTAYFG 112
+I F LLL G+ G
Sbjct: 232 HA-EEIPPCFTHRLLLKEGEVVAQG 255
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 59.8 bits (145), Expect = 6e-10
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGEKKR IA + P +++LDEPT+GLD L+ L E G TV+ + HQ
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+ M D + ++ G+ +G ++
Sbjct: 198 -LDLVPEMADYIYVMDKGRIVAYGTVEEI 225
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 58.9 bits (143), Expect = 6e-10
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ + + R G S G +++ IA L+ +P ++LLDEPT+GLD A +L +++
Sbjct: 126 MEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA- 184
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
GK ++ + H ++ + D++++L G+ Y G
Sbjct: 185 LGKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 58.7 bits (142), Expect = 8e-10
Identities = 29/101 (28%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 19 TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
TI+G+ GLSGG+++R IA L+ NP +++ DE TS LD + +++M ++
Sbjct: 130 TIVGE-QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--A 186
Query: 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
G+TV++ H+ S+ D+++++ G+ G ++++
Sbjct: 187 GRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 58.3 bits (141), Expect = 8e-10
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 21 IGDYMKR---GLSGGEKKRANIA-CELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
I DY+ R LSGG+++R +A C + NP ++LLDEP S LD +++ +K+
Sbjct: 118 IADYLDRLPEQLSGGQRQRVALARCLVRPNP-ILLLDEPFSALDPLLREEMLALVKQLCS 176
Query: 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114
+ +T+++ H S + ++ ++ G+ D
Sbjct: 177 ERQRTLLMVTHHLSDAR-AIASQIAVVSQGKIKVVSDC 213
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 59.2 bits (143), Expect = 8e-10
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P ++LLDEPTS LD A + L+ +E T+V+ H
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN--YTIVIVTHN 204
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
Q + D + + G+ +G T ++V
Sbjct: 205 -IGQAIRIADYIAFMYRGELIEYGPTREIV 233
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 58.5 bits (142), Expect = 9e-10
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA---YSLMSSLKRYAEKEGKTVVVT 85
LSGGE++R IA L+ P+L+L DEPT LD++ A + LM L R E +VVT
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR--ELNTSFLVVT 199
Query: 86 VHQPSSQIFHMFDKLLLLCNGQ 107
H ++ D++L + +GQ
Sbjct: 200 -HDL--ELAKKLDRVLEMKDGQ 218
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 58.3 bits (142), Expect = 9e-10
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV-VT 85
LSGG ++R +A L +P ++LLDEP S LD+ L L + GKTV+ VT
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVT 189
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 58.9 bits (143), Expect = 9e-10
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
++ I L L + Y+ LSGG+++RA IA L + +LLDEP + LD
Sbjct: 116 INEAIEYLHLEDLS----DRYLDE-LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
+ +M L+R A++ GKT+VV +H
Sbjct: 171 SVQIMKILRRLADELGKTIVVVLH 194
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 59.7 bits (145), Expect = 1e-09
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A L P ++LLDEP LD+ L L++ ++ G T V H
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD 197
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120
+ + D++++L G+ G ++V D
Sbjct: 198 Q-EEALELADRVVVLNQGRIEQVGPPDEVYDH 228
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 58.6 bits (142), Expect = 1e-09
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P +ML DEPTS LD ++ ++ AE EG+T+VV H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHE 211
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 57.8 bits (140), Expect = 1e-09
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
+D +++ + L ++ Y SGG ++R IA L+ P ++ LDEPT GLD
Sbjct: 112 IDELLDFVGLLEAADRLVKTY-----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
+ +++ E+ G T+++T H
Sbjct: 167 RAHVWEYIEKLKEEFGMTILLTTH 190
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 57.7 bits (140), Expect = 1e-09
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 21 IGDYMKRG---LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ +Y + LS G +++ ++ +P L++LDEP SGLD L ++ A
Sbjct: 118 LSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR- 176
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
GKTV+++ HQ + + D++LLL G+ +G
Sbjct: 177 AGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 57.4 bits (139), Expect = 2e-09
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
L+L H + LSGGE++R IA ++ +P +++ DEPT LD + +M+
Sbjct: 120 ALELVGLSHKH--RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 70 SLKRYAEKEGKTVVVTVH 87
LK+ K G TVVV H
Sbjct: 178 LLKKI-NKAGTTVVVATH 194
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 58.0 bits (141), Expect = 2e-09
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 23 DYMKRG-----LSGGEKKRANIACELL---TNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74
Y+K G LSGGE +R +A EL T L +LDEPT+GL H L+ L+R
Sbjct: 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218
Query: 75 AEKEGKTVVVTVHQ 88
+K G TVVV H
Sbjct: 219 VDK-GNTVVVIEHN 231
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 57.7 bits (140), Expect = 2e-09
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 24 YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83
+ G SGGEKKR I L P L +LDE SGLD A + + R E + ++
Sbjct: 140 SVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLI 199
Query: 84 VTVHQPSSQIFHMF--DKLLLLCNGQTAYFGD 113
+T +Q ++ + D + +L +G+ GD
Sbjct: 200 ITHYQ---RLLNYIKPDYVHVLLDGRIVKSGD 228
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 57.6 bits (140), Expect = 2e-09
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
GLSGG+++R +A L P ++LLDEPTS LD + + + ++ T+V+
Sbjct: 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVT 197
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H Q + D+ L NG+ FG T ++
Sbjct: 198 HNM-QQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 57.5 bits (140), Expect = 2e-09
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L NP L++ DEPTS LD ++ LK+ E+ G T++ H
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ + D++ ++ G+ G
Sbjct: 206 LGV-VAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 57.2 bits (139), Expect = 2e-09
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG+++R IA L NP +ML DEPTS LD ++ +K AE EG T+
Sbjct: 130 DAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTM 188
Query: 83 VVTVHQ 88
VV H+
Sbjct: 189 VVVTHE 194
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 58.5 bits (141), Expect = 3e-09
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+GD LSGG ++R IA + P ++LLDEP S LD++ ++ + E+
Sbjct: 127 LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ ++ V + DK ++ +G+ A G+ + D
Sbjct: 187 LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 57.1 bits (139), Expect = 3e-09
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++ IA L++ P L+LLDEP+ GL + ++K ++ G T+++ V Q
Sbjct: 137 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQ 195
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ + D+ +L NG+ G
Sbjct: 196 NARFALEIADRGYVLENGRIVLSG 219
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 56.6 bits (137), Expect = 3e-09
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
+D ++N++DL N + S G K+R IA LL +P L++LDEPT+GLD
Sbjct: 105 IDEVLNIVDLTNTGKKKAKQF-----SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116
L ++ + E+ G TV+++ H S++ + D + ++ G Y G NK
Sbjct: 160 IQELRELIRSFPEQ-GITVILSSH-ILSEVQQLADHIGIISEGVLGYQGKINK 210
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 57.2 bits (139), Expect = 3e-09
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 6 HIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAY 65
++ + L G+ LS G+++R IA L T P L+LLDEP +GL+
Sbjct: 132 ELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186
Query: 66 SLMSSLKRYAEKEGKTVVVTVH 87
L ++ ++ G T+++ H
Sbjct: 187 ELAELIRELRDRGGVTILLIEH 208
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 56.4 bits (137), Expect = 4e-09
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 24 YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83
Y+ G SGGEKKR I LL P L +LDEP SGLD A + + + E+ ++
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 84 VTVHQPSSQIFHMF--DKLLLLCNGQTAYFGD 113
+T +Q ++ D++ +L +G+ GD
Sbjct: 160 ITHYQ---RLLDYIKPDRVHVLYDGRIVKSGD 188
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 56.3 bits (136), Expect = 4e-09
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRY 74
+ KR LSGGE++R +A L+ + ++LLDEP + LD L+ L
Sbjct: 118 LAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA- 176
Query: 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ TV++ HQP + +++ L NG+ A G
Sbjct: 177 --ETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 56.4 bits (137), Expect = 4e-09
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L NP ++L DE TS LD S+++ L+ + G T+V+ H+
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 58.3 bits (142), Expect = 5e-09
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+ L T IGD GLS G+ +R +A LL L+LLDEPT+ LD+H+ +M
Sbjct: 468 LPLLPQGLDTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ 526
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
+L + +T ++ HQ + D++ ++ +GQ
Sbjct: 527 ALNAAS--RRQTTLMVTHQ-LEDLAQW-DQIWVMQDGQ 560
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 56.3 bits (136), Expect = 6e-09
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P LML DEPTS LD + ++ ++ AE EG T+V+ H+
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHE 195
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 57.8 bits (140), Expect = 6e-09
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 6/85 (7%)
Query: 27 RGL--SGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84
RGL SGGEK+R IA +L NP +++LDE TS LD+H ++ ++L+ + G+T +V
Sbjct: 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLV 453
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQTA 109
H+ S+ I D++++L NG+
Sbjct: 454 IAHRLSTIIDA--DEIIVLDNGRIV 476
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 57.0 bits (138), Expect = 6e-09
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVV 83
SGG ++R +IA L+ P ++ LDEPT+GLD A + + +LK +EG T++
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK----EEGVTIL 178
Query: 84 VTVH 87
+T H
Sbjct: 179 LTTH 182
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 56.9 bits (138), Expect = 8e-09
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ + R LSGG+++R +A L+ P + LLDEP S LD+ + S +K+ E+
Sbjct: 123 LEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER 182
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
G T + H + + D+++++ +G+ G ++
Sbjct: 183 LGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLEL 221
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 56.0 bits (135), Expect = 9e-09
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R ++A L P L+LLDEPT+ LD A ++ ++ A G TVV +H
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHD 196
Query: 89 PSSQIFHMF-DKLLLLCNGQTAYFGDTNKVV 118
+ + + D +++L G+ G +V+
Sbjct: 197 LN--LAASYCDHVVVLDGGRVVAAGPPREVL 225
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 56.6 bits (137), Expect = 9e-09
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 23 DYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
Y++R LSGG+K+R +A L P ++ DEPT+GLD ++ K+G
Sbjct: 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQG 215
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
KT+++ H + + + + +G+ GDT +
Sbjct: 216 KTIILVTHDLDN-VLEWTKRTIFFKDGKIIKDGDTYDI 252
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 57.4 bits (139), Expect = 1e-08
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
+Y LSGG+++R +IA L+ ++L DEPT LDSH+ +M+ L + ++ G TV
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTV 197
Query: 83 VVTVHQP 89
++ H P
Sbjct: 198 IIVTHDP 204
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 55.0 bits (133), Expect = 1e-08
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV-VT 85
+ LSGG+++R + ++ P + L+DEP S LD+ + + LKR ++ G T + VT
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFG 112
Q + M D++ ++ +GQ G
Sbjct: 189 HDQ--VEAMTMADRIAVMNDGQIQQIG 213
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 55.8 bits (134), Expect = 1e-08
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
VD + ++D + +H I + LS G+KKR IA L+ +LLDEPT+GLD
Sbjct: 117 VDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+++ ++R +G V+++ H I+ + D + +L GQ G +V
Sbjct: 172 RTQMIAIIRRIVA-QGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEV 223
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 55.2 bits (134), Expect = 1e-08
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG+++R IA L +P +ML DEPTS LD ++ +K AE EG T+
Sbjct: 131 DAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTM 189
Query: 83 VVTVHQ 88
++ H+
Sbjct: 190 IIVTHE 195
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 56.0 bits (136), Expect = 1e-08
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG ++R IA L NP L++ DEPT+ LD ++ LK ++G +++ H
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
+ + D++ ++ G+ G + F N
Sbjct: 214 LGV-VAEIADRVAVMYAGRIVEEGPVE---EIFKN 244
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 55.3 bits (134), Expect = 1e-08
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGGE++R IA L NP +LLDEP +G+D
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVD 171
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 54.4 bits (132), Expect = 2e-08
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 19 TIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
T IG+ +G LSGG+K+R ++A + ++ + LLD+P S +D+H + +
Sbjct: 119 TEIGE---KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL 175
Query: 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
KT ++ HQ Q+ D++++L NG+
Sbjct: 176 LNNKTRILVTHQL--QLLPHADQIVVLDNGR 204
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 55.5 bits (134), Expect = 2e-08
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
DY LSGG+K+R IA L NP++++LDE TS LD A +L+ +++ + T+
Sbjct: 137 DYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196
Query: 83 VVTVH 87
+ H
Sbjct: 197 ISITH 201
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 54.9 bits (133), Expect = 2e-08
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGGE++R IA L TNP +LLDEP +G+D
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 56.8 bits (138), Expect = 2e-08
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R LSGGE++R IA LL + L+LLDEPT GLD+ ++ L +A + KTV++
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMIT 531
Query: 87 HQPSSQIFHMFDKLLLLCNGQ 107
H+ + FD++ ++ NGQ
Sbjct: 532 HRLTG--LEQFDRICVMDNGQ 550
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 55.0 bits (132), Expect = 2e-08
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +IA L P ++L DEPTS LD ++ +++ AE EGKT+VV H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHE 211
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 55.2 bits (133), Expect = 2e-08
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH- 87
+SGG+ ++ I L NP +++LDEPT+GLD + +M LK E KT+++ H
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
Query: 88 -----QPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDF 120
+ + ++ M + ++ F D K+ D+
Sbjct: 206 MNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADW 243
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 52.5 bits (127), Expect = 3e-08
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGEK R +A LL NP L+LLDEPT+ LD + +L +LK Y G TV++ H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PG-TVILVSH 125
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 54.9 bits (132), Expect = 3e-08
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LS G+KKR IA L+ P +++LDEPT+GLD +M L ++ G T+++ H
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATH 200
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 54.2 bits (131), Expect = 3e-08
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R L+GG ++R IA LL PAL+LLDEPT GLD + ++ + ++ A +G +V+
Sbjct: 131 RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWAT 190
Query: 87 H-----QPSSQIFHMFDKLLLLCNGQ 107
H + D+L++L G+
Sbjct: 191 HLVDEIEAD-------DRLVVLHRGR 209
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 54.0 bits (131), Expect = 3e-08
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSH 62
+ ++ + LA+ G+ LS G+++R IA L T+P L+LLDEP +GL+
Sbjct: 123 RAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPE 177
Query: 63 AAYSLMSSLKRYAEKEGKTVVVTVH 87
L ++ E+ G TV++ H
Sbjct: 178 ETEELAELIRELRER-GITVLLVEH 201
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 54.3 bits (131), Expect = 3e-08
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ +Y+ R S G K++ IA L+ +P++++LDEPTSGLD +K+
Sbjct: 123 LLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN- 181
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
EG+ V+ + H ++ + D++++L G+ G
Sbjct: 182 EGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEG 215
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 54.2 bits (131), Expect = 3e-08
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD-SHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+++RA +A L + ++LLDEPT+ LD +H LM L R +GKTVV +H
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV-ELM-RLMRELNTQGKTVVTVLH 196
Query: 88 QPSSQIFHMFDKLLLLCNGQ 107
+Q D L++L NG
Sbjct: 197 D-LNQASRYCDHLVVLANGH 215
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 53.8 bits (130), Expect = 3e-08
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGE++R IA ++ PA++L DEPT LD ++ +M + + G TV++ H
Sbjct: 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-NRLGTTVLMATH 195
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 55.3 bits (134), Expect = 4e-08
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG ++R +A LL P L+LLDEPT+ LD + L LKRY G TV+V H
Sbjct: 154 LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSH 208
Score = 53.0 bits (128), Expect = 2e-07
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 17 QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
Q +G LSGGEK R +A LL P L+LLDEPT+ LD + +L +L +
Sbjct: 433 QEKPVGV-----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-- 485
Query: 77 KEGKTVVVTVH 87
EG TV++ H
Sbjct: 486 -EG-TVLLVSH 494
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 54.0 bits (131), Expect = 4e-08
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 23/113 (20%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIA---CELLTN---PALMLLDEPTSGLDSHA 63
L + H DY LSGGE++R +A +L P +LLDEPTS LD
Sbjct: 118 ALAQVDLAHLAGRDY--PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH------MF-DKLLLLCNGQTA 109
+ ++ ++ A + G V+V + H + D+++LL G+
Sbjct: 176 QHHVLRLARQLAHERGLAVIV--------VLHDLNLAARYADRIVLLHQGRLV 220
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 54.0 bits (130), Expect = 4e-08
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE +R IA L + + LLDEP++ LD ++R+AE KT V H
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175
Query: 89 PSSQIFHMFDKL---LLLCNGQTAYFGDTNK-------VVDFFHNIGLTWNK 130
M D L L++ G+ + G N + F N+ +T+ +
Sbjct: 176 -----IIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFRR 222
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 54.0 bits (130), Expect = 4e-08
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
GLSGG+++R IA L T+P ++LLDEPTS LD +A + +L K+ T+++
Sbjct: 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL--LGLKDDYTMLLVTR 205
Query: 88 --QPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
Q +S+I D+ +G + DT ++
Sbjct: 206 SMQQASRI---SDRTGFFLDGDLIEYNDTKQM 234
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 53.9 bits (129), Expect = 4e-08
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L+ ++L DEP + LD +A +M +L+ + +G TVVVT+HQ
Sbjct: 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 53.8 bits (130), Expect = 4e-08
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ DY+ + LSGG+K+R IA L NP +++ DE TS LD + + +
Sbjct: 132 MEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113
KT++ H I + DK+++ G+ G
Sbjct: 192 RKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGK 225
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 52.6 bits (126), Expect = 5e-08
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGE +R IA LL N L DEP++ LD + +++R +E+ KT +V H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 52.0 bits (126), Expect = 6e-08
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84
+ LSGG +++ +A L +P +++LDEPT G+D A + ++ A+ GK V++
Sbjct: 101 LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLL 159
Query: 85 TVHQPSS---QIFHMFDKLLLLCNGQ 107
SS ++ + D++L++ G+
Sbjct: 160 I----SSELDELLGLCDRILVMYEGR 181
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 53.9 bits (129), Expect = 6e-08
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 23 DYMKRG---LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
DY+KR LSGG+K+R +A + + ++LDEPT GLD ++ +R ++
Sbjct: 142 DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK 201
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGL 126
K +++ H Q+ + D+++++ G+ G + F N L
Sbjct: 202 KRIIMVTHN-MDQVLRIADEVIVMHEGKVISIGSP---FEIFSNQEL 244
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 53.3 bits (128), Expect = 7e-08
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D + R SGG ++R IA L+T P L+ +DEPT GLD L+ L+ G V
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAV 202
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
++ H + +LL++ G+ G T++V+D
Sbjct: 203 IIVTHDLGVARL-LAQRLLVMQQGRVVESGLTDQVLD 238
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 53.6 bits (129), Expect = 7e-08
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LS G+KKR IA L +P +++LDEP + LD +LM L R +GKTV+V H
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATH 196
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 54.4 bits (131), Expect = 8e-08
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 17 QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
T IG LSGG +++ I LLT P +++LDEPT G+D A + + + A+
Sbjct: 385 HRTQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439
Query: 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNK 116
K+ ++++ P ++ + D++L++ NG A DT
Sbjct: 440 KDKGIIIISSEMP--ELLGITDRILVMSNGLVAGIVDTKT 477
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 54.6 bits (131), Expect = 8e-08
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 13 LANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK 72
L N T +G Y K LSGG+K+R IA LL P ++LLDE TS LDS++ + ++
Sbjct: 1344 LPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 73 RYAEKEGKTVVVTVHQPSS 91
+K KT++ H+ +S
Sbjct: 1403 DIKDKADKTIITIAHRIAS 1421
Score = 50.8 bits (121), Expect = 1e-06
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 19 TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
T++G + LSGG+K+R +IA ++ NP +++LDE TS LD+ + Y + ++ E
Sbjct: 571 TLVGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE 629
Query: 79 GKTVVVTVHQPSS 91
+ ++ H+ S+
Sbjct: 630 NRITIIIAHRLST 642
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 52.7 bits (127), Expect = 9e-08
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYS---LMSSLKRYAEKEGKTVVV 84
GLSGG+++R IA L P ++LLDEPTS LD A L+ L K+ T+V+
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-----KKKYTIVI 198
Query: 85 TVH--QPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H Q +++I D+ +G+ +G T ++
Sbjct: 199 VTHNMQQAARI---SDRTAFFYDGELVEYGPTEQI 230
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 52.7 bits (127), Expect = 9e-08
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 11 LDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS 70
L L + + + G SGGEKKR I L + L +LDE SGLD A +
Sbjct: 134 LKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG 193
Query: 71 LKRYAEKEGKTVVVTVHQ 88
+ + E +++T +Q
Sbjct: 194 INKLMTSENSIILITHYQ 211
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 53.1 bits (127), Expect = 9e-08
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGG+++R IA L P ++L+DEPTS +D S A L++ LK +V+
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI-----AIVIV 208
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H P Q+ + D + L NG+ +G +N++
Sbjct: 209 SHNP-QQVARVADYVAFLYNGELVEWGSSNEI 239
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 53.3 bits (128), Expect = 1e-07
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGG K+R +A L+ +P +++LDEPT+GLD A + + L+ + GKT+++T
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTT 195
Query: 87 H 87
H
Sbjct: 196 H 196
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 52.7 bits (127), Expect = 1e-07
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 22 GDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
+Y R LSGG+++R +A L +P ++L+DEP LD L +K ++
Sbjct: 126 SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL 185
Query: 79 GKTVVVTVHQPSSQIFHMFDKLLLLCNG 106
GKT+V H + + D++ ++ G
Sbjct: 186 GKTIVFVTHD-IDEALKLADRIAVMDAG 212
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 52.1 bits (125), Expect = 2e-07
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R LSGG+++R IA L P ++L DEPTS LD +++++++ A+ E +T+V+
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVT 201
Query: 87 HQPS 90
H+ S
Sbjct: 202 HEMS 205
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 52.4 bits (126), Expect = 2e-07
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
I + LS G +++ ++ P L++LDEP SGLD L ++ E
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE- 178
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
EG T++ + H+ + + D+LL+L GQT +G +
Sbjct: 179 EGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDI 217
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 52.2 bits (125), Expect = 2e-07
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAY---SLMSSLKRYAEKEGKTVVV 84
GLSGG+++R IA L P ++L+DEPTS LD + L+ L K+ ++++
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-----KKDYSIII 221
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H Q + DK NG + DT+K+
Sbjct: 222 VTHN-MQQAARISDKTAFFLNGYVNEYDDTDKI 253
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 52.5 bits (126), Expect = 2e-07
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ ++ R LSGG+++R +A L+ P ++LLDEP S LD + LK E+
Sbjct: 90 LEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGD 113
G T V H + M D++ ++ G+ A G
Sbjct: 150 LGITFVFVTHDQEEAM-TMSDRIAIMRKGKIAQIGT 184
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 52.1 bits (125), Expect = 2e-07
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
GLSGG+++R IA L +P ++L+DEP S LD A + ++ AE+ TVVV H
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE--YTVVVVTH 257
Query: 88 --QPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
Q +++I + L G+ + DT+K+ F N
Sbjct: 258 NMQQAARISD--QTAVFLTGGELVEYDDTDKI---FEN 290
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 51.5 bits (124), Expect = 2e-07
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 5 DHIINVLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSH 62
I L N T++G+ G LS GE++ IA +L +P +++LDE TS +D+
Sbjct: 119 HDFIM--KLPNGYDTVLGE---NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173
Query: 63 AAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNG 106
+ +L++ +G+T ++ H+ S+ DK+L+L +G
Sbjct: 174 TEKLIQEALEKL--MKGRTSIIIAHRLSTIKNA--DKILVLDDG 213
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 51.8 bits (124), Expect = 2e-07
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVV 84
LSGG+++R IA L TNP ++L+DEPTS LD + L+ L KE T+V+
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-----KEKYTIVI 209
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H Q + D+ G+ DTNK+
Sbjct: 210 VTHN-MQQAARVSDQTAFFYMGELVECNDTNKM 241
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 52.1 bits (125), Expect = 2e-07
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH- 87
LSGG+++R IA + +P ++L+DEP S LD A + ++ AE+ TVV+ H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE--YTVVIVTHN 238
Query: 88 -QPSSQIFHMFDKL-LLLCNGQTAYFGDTNKVVDFFHN 123
Q +++I DK + L G+ F DT+K+ F N
Sbjct: 239 MQQAARI---SDKTAVFLTGGELVEFDDTDKI---FEN 270
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 52.0 bits (125), Expect = 3e-07
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA + P +++LDEPT+GLD +++ +K ++ T+++ H
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS 204
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV---VDFFHNIGL 126
+ + D+++++ G+ G +V V+ +IGL
Sbjct: 205 -MEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGL 244
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 51.4 bits (123), Expect = 3e-07
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGE++R IA L+ NP L+L DEPT LD+ A S+ L +G +V H
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 51.4 bits (123), Expect = 3e-07
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D+M LSGG+++R IA L P +ML DE TS LD +++ ++R A + T+
Sbjct: 141 DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTM 200
Query: 83 VVTVHQ 88
++ H+
Sbjct: 201 LLVTHE 206
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 53.1 bits (128), Expect = 3e-07
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 24 YMKRG-----LSGGEKKRANIACELL---TNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
Y++ G LSGGE +R +A EL T L +LDEPT+GL L+ L+R
Sbjct: 820 YIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLV 879
Query: 76 EKEGKTVVVTVH 87
+K G TVVV H
Sbjct: 880 DK-GNTVVVIEH 890
Score = 37.3 bits (87), Expect = 0.018
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 29 LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE +R +A ++ LT L +LDEP+ GL L+++LKR + G T++V
Sbjct: 489 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNRRLINTLKRLRDL-GNTLIVV 546
Query: 86 VH 87
H
Sbjct: 547 EH 548
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 52.1 bits (126), Expect = 3e-07
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 16/88 (18%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA----YSLMSSLKRYAEKEGKTV 82
LSGG +++ +A L T+P +++LDEPT G+D A Y L+ L EGK +
Sbjct: 400 GTLSGGNQQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELA----AEGKAI 454
Query: 83 VVTVHQPSS---QIFHMFDKLLLLCNGQ 107
++ SS ++ + D++L++ G+
Sbjct: 455 LMI----SSELPELLGLSDRILVMREGR 478
Score = 36.3 bits (85), Expect = 0.035
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83
LS +++ IA L + +++LDEPT+ L L ++R + G ++
Sbjct: 146 LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAII 199
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 51.8 bits (124), Expect = 4e-07
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG ++R +A L P ++L+DE S LD S+ LK+ KT+V H
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVV---------DFFHNIGLTWNKSKAAKKCER 139
I + D+++++ G+ G ++++ +F + L+ + A++ +
Sbjct: 190 LDEAI-RIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLS--QVFDAERIAQ 246
Query: 140 RSSWLPKR----RGFTQAI 154
R + P +G A+
Sbjct: 247 RMNTGPITKTADKGPRSAL 265
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 50.6 bits (121), Expect = 4e-07
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V + + L +G+ LSGG+++R +A L T P+++LLDEP +GLD
Sbjct: 94 VRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
L A G +++T H +Q D+++LL NG+
Sbjct: 149 QELLTELFIELAG-AGTAILMTTHD-LAQAMATCDRVVLL-NGR 189
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 51.8 bits (124), Expect = 4e-07
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGE++R +A L ++LLDEPT+ LD + + ++R + +GKT V +H
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIH 197
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 52.4 bits (126), Expect = 4e-07
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRG-----------LSGGEKKRANIACELLTNPALMLL 52
+H+I+ LA I + +G LSGG+++R IA L+ NP +++
Sbjct: 560 FEHVIHAAKLAGAHDFISE--LPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617
Query: 53 DEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTA 109
DE TS LD + +M +++ G+TV++ H+ S+ D++++L GQ A
Sbjct: 618 DEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLST--VRACDRIIVLEKGQIA 670
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 51.2 bits (123), Expect = 4e-07
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+ +R IA L P +++LDEPT+GLD +M + +++G T V+ H
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV---VDFFHNIGLTWNKSKAAKKCERRSSWLP 145
D+++++ G G ++ D IGL LP
Sbjct: 206 -MEDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLD----------------LP 248
Query: 146 KRRGFTQAIPKNCNHNTFPMPTLSEEEECKQL 177
+ F +A+ + +FP P L+ EE ++
Sbjct: 249 ETVKFKRALEEKFGI-SFPKPCLTLEELAHEV 279
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 50.2 bits (120), Expect = 5e-07
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+++R +A LL+ L +LDEPT+ LD ++ + + G VV+T HQ
Sbjct: 126 LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR-GGMVVLTTHQ 184
Query: 89 P 89
Sbjct: 185 D 185
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 49.1 bits (118), Expect = 6e-07
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R A LL P + LDE TS LD + L LK + G TV+ H+
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK----ELGITVISVGHR 147
Query: 89 PSSQIFHMFDKLLLLCN 105
PS FH D++L L
Sbjct: 148 PSLWKFH--DRVLDLDG 162
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 51.5 bits (124), Expect = 6e-07
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 28/118 (23%)
Query: 9 NVLDLANCQHTIIGDYMKR-------------GLSGGEKKRANIACELLTNPALMLLDEP 55
+ +D A TI + ++R LSGG +++A +A LL NP +++LDEP
Sbjct: 374 SRIDDAAELKTI-LESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEP 432
Query: 56 TSGLDSHAA---YSLMSSLKRYAEKEGKTVVVTVHQPSS---QIFHMFDKLLLLCNGQ 107
T G+D A Y L++ L ++G ++V SS ++ + D++L++ G+
Sbjct: 433 TRGIDVGAKYEIYKLINQLV----QQGVAIIVI----SSELPEVLGLSDRVLVMHEGK 482
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.5 bits (121), Expect = 6e-07
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 19/98 (19%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE------KEGKT 81
GLSGG+++R IA L P ++L+DEPTS LD +S+LK E K+ T
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP------ISTLK--IEELIQELKKDYT 197
Query: 82 VVVTVH--QPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+V+ H Q +S+I DK NG+ FGDT +
Sbjct: 198 IVIVTHNMQQASRI---SDKTAFFLNGEIVEFGDTVDL 232
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 49.9 bits (120), Expect = 6e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+K+R +A L++N + +LDEPT+ LD+ A +L + L R +G V+ H
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV-ALFAELIRAHLAQGGIVIAATHI 186
Query: 89 P 89
P
Sbjct: 187 P 187
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 50.7 bits (122), Expect = 6e-07
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD-SHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+++R IA L NP L++ DEP S LD S A L + LK E+ G T + H
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFISH 168
Query: 88 QPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
S + ++ D++ ++ G+ G T +V F N
Sbjct: 169 D-LSVVRYISDRIAVMYLGKIVEIGPTEEV---FSN 200
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 49.2 bits (118), Expect = 6e-07
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 29 LSGGEKKRANIACELLTNP--ALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGGE +R +A EL + P L +LDEP++GL L+ +K + G TV++
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIE 146
Query: 87 HQPS 90
H
Sbjct: 147 HNLD 150
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 51.5 bits (124), Expect = 6e-07
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE++R + LL+ P ++LLDEPT+ LD+ + L L+ Y G V VT
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVT 215
Score = 41.4 bits (98), Expect = 9e-04
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE+ R ++A L + ++LLDEPT+ LD +L +L +A G VV++
Sbjct: 444 LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVIS 497
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 50.2 bits (120), Expect = 7e-07
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVV 84
GLSGG+++R IA + P ++L+DEPTS LD +H LM LK+ +V
Sbjct: 145 GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK------NYTIV 198
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
V Q + D+ G+ DT +
Sbjct: 199 IVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 50.1 bits (120), Expect = 7e-07
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D + R SGG ++R IA L+T P L+ +DEPT GLD L+ L+ + G V
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
V+ H + + D+L+++ GQ G T++V+D
Sbjct: 206 VIVTHDLAVARL-LADRLMVMKQGQVVESGLTDRVLD 241
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 49.7 bits (120), Expect = 8e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++ IA L++ P L+LLDEP+ GL + +++ + EG T+++ V Q
Sbjct: 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILL-VEQ 190
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGD 113
+ + D+ +L G+ G
Sbjct: 191 NARFALEIADRAYVLERGRVVLEGT 215
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 51.4 bits (124), Expect = 8e-07
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 23 DYMKRG-----LSGGEKKRANIACELL---TNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74
Y+K G LSGGE +R +A EL T L +LDEPT+GL L+ L R
Sbjct: 812 GYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL 871
Query: 75 AEKEGKTVVVTVH 87
+K G TV+V H
Sbjct: 872 VDK-GNTVIVIEH 883
Score = 38.7 bits (91), Expect = 0.007
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 29 LSGGEKKRANIACEL---LTNPALMLLDEPTSGL---DSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE +R +A ++ LT L +LDEP+ GL D+ L+ +LKR + G TV
Sbjct: 482 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNER---LIETLKRLRDL-GNTV 536
Query: 83 VVTVHQP 89
+V H
Sbjct: 537 IVVEHDE 543
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 51.0 bits (123), Expect = 1e-06
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LS GE++R I L L++LDEPT+ L A L L+R A EGKT++ H
Sbjct: 141 LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA-AEGKTIIFITH 198
Score = 44.8 bits (107), Expect = 8e-05
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R LSGG +++ +A EL P L++ +PT GLD A + L GK V++ +
Sbjct: 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL-LELRDAGKAVLL-I 459
Query: 87 HQPSSQIFHMFDKLLLLCNGQ 107
+ +I + D++ ++ G+
Sbjct: 460 SEDLDEILELSDRIAVIYEGR 480
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 49.7 bits (119), Expect = 1e-06
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+ +R IA L P +++LDEPT+GLD LM+ K+ + G T+V+ H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTH 203
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 49.2 bits (118), Expect = 1e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A L +P L+L+DEP LD L KR ++ GKT+V H
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ F + D++ ++ NG+ G
Sbjct: 196 -IDEAFRLADRIAIMKNGEIVQVG 218
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 50.3 bits (121), Expect = 2e-06
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGG+++R IA L+ NP++++LDE TS LD + +L+R G T ++
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVA 669
Query: 87 HQPS 90
H+ S
Sbjct: 670 HRLS 673
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 50.2 bits (120), Expect = 2e-06
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA---YSLMSSLKRYAEKEGKTVVV 84
LSGG +++A +A LLTNP +++LDEPT G+D A Y L++ L + EG ++V
Sbjct: 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ----EGVAIIV 458
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQ 107
V +++ + D++L++ G+
Sbjct: 459 -VSSELAEVLGLSDRVLVIGEGK 480
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 49.1 bits (118), Expect = 2e-06
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAY---SLMSSLK-RYAEKEGKTV 82
GLSGG+++R IA L P ++L+DEPTS LD + L++ LK +Y T+
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKY------TI 201
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
V+ H Q + D G+ FG T+K F N
Sbjct: 202 VIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDK---IFTN 238
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 50.1 bits (120), Expect = 2e-06
Identities = 28/94 (29%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 27 RG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84
RG LSGG+K+R +IA LL N +++LD+ S +D + ++ +L+++ EG+TV++
Sbjct: 448 RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW--GEGRTVII 505
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+ H+ S+ ++L++ +G A G+ +++
Sbjct: 506 SAHRLSA--LTEASEILVMQHGHIAQRGNHDQLA 537
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 49.1 bits (117), Expect = 2e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L +NP ++L DE TS LD S++ LK + G T+++ H+
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 48.9 bits (117), Expect = 2e-06
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+K+R IA L P ++ DEPT+ LD +++++K +K G T+++ H
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 50.2 bits (120), Expect = 2e-06
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 29 LSGGEKKRANIACELLT---NPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE +R +A ELL P L +LDEPT+GL +H +L+ L+ +G TVV+
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVII 868
Query: 86 VH 87
H
Sbjct: 869 EH 870
Score = 32.5 bits (74), Expect = 0.58
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 29 LSGGEKKRANIACELLTNPALM----LLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84
LSGGE++R +A L L+ +LDEP+ GL + L++ +K+ + +G TV++
Sbjct: 477 LSGGEQERTALAKHL--GAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLL 533
Query: 85 TVH 87
H
Sbjct: 534 VEH 536
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 48.7 bits (116), Expect = 3e-06
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+ +R IA + P ++ LDEP +GLD +M K Y +K G TV++ H
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTH 203
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 48.5 bits (116), Expect = 3e-06
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L NP L+LLDEP LD+ + + L + ++ GK V++ H
Sbjct: 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
Query: 89 PSSQIFHMFDKLLLLCNG 106
+F M +L+LL G
Sbjct: 189 IEEAVF-MATELVLLSPG 205
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.4 bits (115), Expect = 3e-06
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P ++LLDEPTS LD ++ + + L ++ T+++ H
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ--YTIILVTHS 206
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
Q + DK G F DT ++
Sbjct: 207 -MHQASRISDKTAFFLTGNLIEFADTKQM 234
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 48.6 bits (115), Expect = 3e-06
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+ +R IA L P +++LDEPT+GLD A +M L + G+TVV+ H
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSGQTVVLVTHL 203
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG---DTNKVVDFF--HNIGL 126
+ D + LL G G D + VDF H +G+
Sbjct: 204 -MDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 48.2 bits (115), Expect = 3e-06
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGE++RA IA + + +LLDEPTS LD +++ + R +++ G TV+ +H
Sbjct: 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 47.8 bits (114), Expect = 3e-06
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYS---LMSSLKRYAEKEGKTVVVT 85
LSGGE++R +A P ++ DEPT LD L+ +L R + G T+V+
Sbjct: 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR---ERGTTLVLV 203
Query: 86 VHQPSSQIFHMFDKLLLLCNGQ 107
H P Q+ D+ L L +G+
Sbjct: 204 THDP--QLAARCDRQLRLRSGR 223
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 47.8 bits (114), Expect = 4e-06
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 IINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSH---A 63
I+ L H I D + LSGGE +R +A LL P L++LDEPT G+D + A
Sbjct: 101 ILPALKRVQAGHLI--DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158
Query: 64 AYSLMSSLKR 73
Y L+ L+R
Sbjct: 159 LYDLIDQLRR 168
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 48.8 bits (117), Expect = 4e-06
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LSGGE +R IA L L LLDEP++ LD + ++R+ E KT +V
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD 513
Query: 87 H 87
H
Sbjct: 514 H 514
Score = 41.1 bits (97), Expect = 0.001
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
D ++ L L N + + LSGGE +R IA LL + + DEP+S LD
Sbjct: 194 FDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ 248
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
+ ++ AE +GK V+V H
Sbjct: 249 RLNAARVIRELAE-DGKYVIVVEH 271
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 48.0 bits (114), Expect = 4e-06
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V + +D+ +H IG+ LSGG+KKR +A + ++LLDEP +G+D
Sbjct: 123 VTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSS 91
++ SL R EGKT++V+ H S
Sbjct: 178 EARII-SLLRELRDEGKTMLVSTHNLGS 204
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 48.5 bits (115), Expect = 4e-06
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG ++R +A L NP ++L+DE S LD + L + K +T+V H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD---------FFHNIGLTWNKSKAAKKCER 139
+ + D++ ++ NG+ G +++++ FF + ++ + +AK R
Sbjct: 225 -LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDIS--QVFSAKDIAR 281
Query: 140 RS 141
R+
Sbjct: 282 RT 283
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 47.5 bits (113), Expect = 4e-06
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ ++ ++ L +GD LSGG+++R +A L P ++LLDEP LD+
Sbjct: 111 VEELLELVQLEG-----LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
L S L++ ++ T V H + + D+++++ NG+ G ++V D
Sbjct: 166 RKELRSWLRKLHDEVHVTTVFVTHD-QEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 47.4 bits (113), Expect = 5e-06
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVTV 86
SGGE++R NIA + + ++LLDEPT+ LD L++ K G ++
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA----RGAALIGIF 206
Query: 87 HQP 89
H
Sbjct: 207 HDE 209
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 47.7 bits (113), Expect = 5e-06
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAY---SLMSSLKRYAEKEGKTVVV 84
GLSGG+++R IA L P ++L+DEPTS LD + LM+ LK+ T+++
Sbjct: 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT-----TIII 202
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H Q + D G G T+++
Sbjct: 203 VTHN-MHQAARVSDTTSFFLVGDLVEHGPTDQL 234
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 48.6 bits (116), Expect = 5e-06
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
Y ++ L L T IG+ LSGG+++R IA LL + +++LDE TS LD
Sbjct: 445 AAYAQDFVDKLPLG--LDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALD 501
Query: 61 SHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91
+ + + ++L+R +G+T +V H+ S+
Sbjct: 502 NESERLVQAALERL--MQGRTTLVIAHRLST 530
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 48.6 bits (116), Expect = 5e-06
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L+ P +++LDE TS LD+ L S R +TV++ H+
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRA----SRTVLLIAHR 673
Query: 89 PS 90
S
Sbjct: 674 LS 675
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 47.5 bits (113), Expect = 5e-06
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA + P ++L+DEP S LD A +++ +L + +K +VVT
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVAT-NVIENLIQELKKNFTIIVVT--H 206
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
Q + D++ +G+ + T ++
Sbjct: 207 SMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 48.7 bits (117), Expect = 5e-06
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
+ LSGGE +R IA L + L LLDEP++ LD ++ +++R AE+ T +V
Sbjct: 452 KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVD 511
Query: 87 H 87
H
Sbjct: 512 H 512
Score = 37.5 bits (88), Expect = 0.018
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA 64
D ++ L L N I + LSGGE +R IA LL + DEPTS LD
Sbjct: 194 DEVVERLGLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248
Query: 65 YSLMSSLKRYAEKEGKTVVVTVH 87
++ ++ A EGK V+V H
Sbjct: 249 LNVARLIRELA--EGKYVLVVEH 269
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 47.7 bits (113), Expect = 6e-06
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD--SHAAY-SLMSSLKRYAEKEGKTVVVT 85
LSGG+++R IA L PA++LLDEP S LD S+A L++ LK E ++VT
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE----EYSIIIVT 220
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+ Q + D+ NG + T ++
Sbjct: 221 HNM--QQALRVSDRTAFFLNGDLVEYDQTEQI 250
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 46.7 bits (112), Expect = 6e-06
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+++R +A LT L +LDEP + +D L + L ++AE+ G V++T HQ
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQ-GGMVILTTHQ 188
Query: 89 P 89
Sbjct: 189 D 189
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 47.4 bits (113), Expect = 6e-06
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R +A L+ P L+LLDEP LD+ + ++ ++ G TV++ H
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
S + M D++LL+ G+
Sbjct: 194 VSEAV-AMADRVLLIEEGK 211
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 47.5 bits (113), Expect = 6e-06
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L P +++LDE TS LD ++ +++ +K TV+ H
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGL 126
+M D++L+L +G+ V+ F + +
Sbjct: 204 IDEA--NMADQVLVLDDGKLL---AQGSPVEIFSKVEM 236
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 48.2 bits (115), Expect = 7e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGGE++R IA LLT P L++ DEPT+ LD
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALD 188
Score = 43.9 bits (104), Expect = 1e-04
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
SGG+++R IA L+ P+L++LDEPTS LD +++ LK +K
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 47.3 bits (113), Expect = 7e-06
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 27/102 (26%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK----RYAEKEGKTVV 83
GLSGG+++R IA + P ++LLDEPTS LD +S+LK K T+V
Sbjct: 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP------ISTLKIEELITELKSKYTIV 221
Query: 84 VTVH--QPSSQI------FHMFDKLLLLCNGQTAYFGDTNKV 117
+ H Q ++++ +M G+ +GDT+ +
Sbjct: 222 IVTHNMQQAARVSDYTAFMYM---------GKLVEYGDTDTL 254
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 45.9 bits (110), Expect = 8e-06
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS GE++ IA L N L++LDEPT+ L L ++R +G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIFISHR 141
Query: 89 PSSQIFHMFDKLLLLCNGQTA 109
++F + D++ +L +G+
Sbjct: 142 L-DEVFEIADRVTVLRDGRVV 161
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 46.8 bits (111), Expect = 8e-06
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
D M + LSGGE++R IA L NP +LLDEP +G+D
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 48.0 bits (115), Expect = 8e-06
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 5/45 (11%)
Query: 19 TIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDS 61
T++G+ RG LSGGE++R IA LL +P +++LDE TS LD
Sbjct: 463 TVVGE---RGRQLSGGERQRLAIARALLKDPPILILDEATSALDV 504
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 47.1 bits (112), Expect = 8e-06
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 21 IGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80
D + R LSGG+ +R NIA L P L++LDE S LD ++ L++ + G
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
Query: 81 TVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIG 125
+ H + ++ ++ GQ D +++ F H G
Sbjct: 203 AYLFITHDLRL-VQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAG 246
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 47.0 bits (112), Expect = 8e-06
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 35/159 (22%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA + P +++LDE TS LD L+ ++K + TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200
Query: 89 PSSQIFHMFDKLLLLCNGQT-------AYFGDTNKVVDFFHNIGLTWNKSKAAKKCERRS 141
+ D++L++ NGQ F N ++ +GL
Sbjct: 201 LDE--VALSDRVLVMKNGQVESTSTPRELFSRGNDLLQ----LGLD-------------- 240
Query: 142 SWLPKRRGFTQAIPKNCNHNTFPMPT--LSEEEECKQLC 178
+P FT ++ ++ N + +P L+E+E +QL
Sbjct: 241 --IP----FTTSLVQSLRQNGYDLPEGYLTEKELEEQLW 273
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 47.5 bits (114), Expect = 9e-06
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L +NP ++L DE TS LD S++ LK + G T+V+ H+
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 46.6 bits (110), Expect = 1e-05
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P ++L+DEP GLD A+ + S ++ + T+V+ H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 89 PSSQIFHMFDKLLLLCN-----GQTAYFGDTNKV 117
Q+ + D GQ FG T K+
Sbjct: 211 -LHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 46.6 bits (111), Expect = 1e-05
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIA---CEL---LTNPALMLLDEPTSGLDSHA 63
L + DY R LSGGE++R +A +L + + + LDEPTS LD
Sbjct: 119 ALAATDLSGLAGRDY--RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
+ + ++ A +EG V+ +H
Sbjct: 177 QHHTLRLARQLA-REGGAVLAVLH 199
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 46.5 bits (110), Expect = 1e-05
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYS---LMSSLKRYAEKEGKTVVVT 85
LSGG+++R IA L T+P ++L DEPTS LD A S L+S LK K ++
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK------NKVTILI 215
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
V Q + D + G+ FG T+ +
Sbjct: 216 VTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 47.3 bits (113), Expect = 1e-05
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R A LL P + LDE TS LD L LK E TV+ H+
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE--ELPDATVISVGHR 573
Query: 89 PSSQIFH 95
P+ FH
Sbjct: 574 PTLWNFH 580
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 46.4 bits (110), Expect = 1e-05
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P ++L+DEPT+ +D + L + K+ T+V+ H
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL--FELKKEYTIVLVTHS 207
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
P +Q + D + L G+ G T KV F N
Sbjct: 208 P-AQAARVSDYVAFLYLGKLIEVGPTRKV---FEN 238
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 46.6 bits (111), Expect = 2e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+++R +A L T+P L+LLDEP S LD+ L + +++ + G T ++ H
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 47.0 bits (113), Expect = 2e-05
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE++R + LL P ++LLDEPT+ LD+ + L L Y G V VT
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVT 217
Score = 38.6 bits (91), Expect = 0.008
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGGE+ R ++A L ++LLDEPT+ LD
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 45.4 bits (108), Expect = 2e-05
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+++R +A L+ L +LDEP + LD L + + +A + G V++T HQ
Sbjct: 131 LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG-IVLLTTHQ 189
Query: 89 PSSQ 92
P
Sbjct: 190 PLPI 193
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 45.8 bits (109), Expect = 2e-05
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG +R IA LL P ++ DEPT+ LD ++ L+ + G +++ H
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ + D++ ++ +G+
Sbjct: 186 -LGVVARIADEVAVMDDGR 203
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 46.1 bits (109), Expect = 2e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+++RA IA L A+MLLDEPT+ LD L+ L ++G T+ +H
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 46.9 bits (111), Expect = 2e-05
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 19 TIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
++ D + SGG K++ + A L+ P L+LLDEPT+G+D A L +++ +E
Sbjct: 2061 SLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII-RE 2119
Query: 79 GKTVVVTVH 87
G+ VV+T H
Sbjct: 2120 GRAVVLTSH 2128
Score = 44.6 bits (105), Expect = 1e-04
Identities = 19/62 (30%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
+ LSGG +++ ++A + + +++LDEPTSG+D ++ S+ L +Y + G+T++++
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY--RSGRTIIMST 1117
Query: 87 HQ 88
H
Sbjct: 1118 HH 1119
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 46.6 bits (111), Expect = 2e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 18 HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
T +G+ LSGG+++R IA +L + ++LLDE TS LD+ + + +L+
Sbjct: 467 DTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-- 523
Query: 78 EGKTVVVTVHQ 88
+G+T ++ H+
Sbjct: 524 KGRTTLIIAHR 534
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 45.5 bits (108), Expect = 2e-05
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLDS 61
SGGE++R NIA + + ++LLDEPT+ LD+
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 45.3 bits (108), Expect = 2e-05
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+++R IA L+ P ++LLDEP LD + LKR ++ G T V H
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 46.6 bits (111), Expect = 2e-05
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSG 58
M +++ + N LD T+IG+ G LSGG+++R IA LL + +++LDE TS
Sbjct: 460 MDFINKMDNGLD------TVIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 59 LDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSS 91
LD+ + ++ ++L ++ +T +V H+ S+
Sbjct: 511 LDTESERAIQAALDEL--QKNRTSLVIAHRLST 541
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 45.2 bits (107), Expect = 3e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L+ P ++L DEPT+ LD ++S +K AE G T V+ H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET-GITQVIVTHE 200
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 45.5 bits (108), Expect = 3e-05
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG ++R IA L P L+LLDEP LD+ + L ++ GK V++ H
Sbjct: 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD 192
Query: 89 PSSQIFHMFDKLLLLCNG 106
+F + +L++L G
Sbjct: 193 IEEALF-LATRLVVLSPG 209
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 45.2 bits (107), Expect = 3e-05
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L+ NP +++LDE TS LD+ + + +L Y E +TV+V H+
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL--YDWPERRTVLVIAHR 208
Query: 89 PSS 91
S+
Sbjct: 209 LST 211
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 45.1 bits (106), Expect = 3e-05
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 23 DYMKRGLSGGEKKRANIACELLTN---PALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
+ +G+S G K+ + LL+ +L+L+DEP +GL L+ LK +EK G
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEK-G 242
Query: 80 KTVVVTVHQPS 90
++ T H P
Sbjct: 243 AQLIFTTHSPL 253
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 45.8 bits (109), Expect = 4e-05
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 10/83 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA---YSLMSSLKRYAEKEGKTVV-V 84
LSGG +++ IA L+T P +++LDEPT G+D A Y L++ K EG +++ V
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK----AEGLSIILV 451
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQ 107
+ P ++ M D++L++ G+
Sbjct: 452 SSEMP--EVLGMSDRILVMHEGR 472
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 44.3 bits (105), Expect = 4e-05
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+++R +A L+ L +LDEPT+ LD L L+ + + G V++T HQ
Sbjct: 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG-IVLLTTHQ 186
Query: 89 P 89
Sbjct: 187 D 187
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 45.1 bits (107), Expect = 4e-05
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+ +R +A L P L++LDE S LD ++ LK+ ++ G + H
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITH 210
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 44.9 bits (107), Expect = 4e-05
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
SGG ++R IA L+T+P L+ +DEPT GLD L+ L+ + G VV+
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 87 H 87
H
Sbjct: 210 H 210
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 44.5 bits (106), Expect = 5e-05
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 29 LSGGEKKRANIACELL-----TNPA--LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81
LSGGE +R +A +L NPA L+LLDEP + LD +L L ++ G
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIA 185
Query: 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
VV++ H + + H D++ LL G+ G ++V
Sbjct: 186 VVMSSHDLNHTLRHA-DRVWLLKQGKLLASGRRDEV 220
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 44.6 bits (106), Expect = 5e-05
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG ++R +A L +P ++L+DE S LD + L R + KT+V H
Sbjct: 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH 219
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 44.5 bits (106), Expect = 5e-05
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 21 IGDYMK---RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDS---HAAYSLMSSLKRY 74
+GD++ + S G R + P ++LLDE + D+ ++ L
Sbjct: 137 LGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV-- 194
Query: 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFF 121
++ KT+V+ H I D+ + L +GQ G +V+ +
Sbjct: 195 --EKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 45.6 bits (108), Expect = 5e-05
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
+ SGG + R +A L P L+LLDEPT+ LD HA L + Y K KT +V
Sbjct: 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET----YLLKWPKTFIVVS 398
Query: 87 H 87
H
Sbjct: 399 H 399
Score = 37.1 bits (86), Expect = 0.019
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSL 71
LSGG+K R A P ++LLDEP++ LD A +L+ L
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 44.1 bits (105), Expect = 5e-05
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 26 KRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83
+RG LSGG++++ IA L+T P L+LLDEPT G+ + ++R + G ++
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAIL 186
Query: 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDT 114
+ V Q + D+ ++ G+ G
Sbjct: 187 L-VEQYLDFARELADRYYVMERGRVVASGAG 216
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 44.8 bits (106), Expect = 5e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ +I ++ L QH IG LS G ++R +A L+ +P +++LDEPT+GLD +
Sbjct: 114 VEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQ 168
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
+ + +K + KT++++ H
Sbjct: 169 LVEIRNVIKNIGKD--KTIILSTH 190
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 44.1 bits (104), Expect = 6e-05
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGG+++R IA L P ++L DEPT+ LD + SL LK+ T+V+
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-----DMTIVLV 201
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H P Q + D + L GQ +G T +V
Sbjct: 202 THFP-QQAARISDYVAFLYKGQIVEWGPTREV 232
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 44.7 bits (105), Expect = 6e-05
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++ +A L NP ++LLDEPTS LD + ++ A++ TV++ H
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHN 221
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
+Q + D+ L +G+ G T ++
Sbjct: 222 -LAQAARISDRAALFFDGRLVEEGPTEQL 249
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 44.1 bits (104), Expect = 6e-05
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGGE++R IA ++ PA++L DEPT LD + ++ + + + G TV++ H
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMATH 195
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 44.6 bits (105), Expect = 6e-05
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
+ LSGG+ + +A L P ++ DE TS LD + +++ +K+ EK GKT+V
Sbjct: 135 KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYIT 193
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD--FFHNIGLT 127
H H D+++++ G+ G+ V+ +GLT
Sbjct: 194 HNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLT 234
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 43.1 bits (102), Expect = 6e-05
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 28 GLSGGEKKRANIACEL---LTNPA-LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83
LSGGEK+ + +A L P L +LDE GLD +L ++ + +G V+
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL-VKGAQVI 135
Query: 84 VTVHQPSSQIFHMFDKLL 101
V H P ++ + DKL+
Sbjct: 136 VITHLP--ELAELADKLI 151
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 44.1 bits (104), Expect = 7e-05
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 21 IGDYMKRG---LSGGEKKRANIACELL-----TNPA--LMLLDEPTSGLDSHAAYSLMSS 70
+ D + R LSGGE +R +A +L NPA L+LLDEP + LD +L
Sbjct: 115 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRL 174
Query: 71 LKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
L ++G +V++ H + + H + LL G+ G +V+
Sbjct: 175 LSALC-QQGLAIVMSSHDLNHTLRHA-HRAWLLKRGKLLASGRREEVL 220
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 44.2 bits (104), Expect = 7e-05
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGG+++R IA + +P+++L+DEP S LD + L+ LK+ T+V+
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-----DYTIVIV 201
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H Q + DK G+ + DT K+
Sbjct: 202 THN-MQQAARVSDKTAFFYMGEMVEYDDTKKI 232
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 45.0 bits (107), Expect = 7e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLD 60
SGG+++R IA L+ P L+LLDEPTS LD
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALD 458
Score = 41.9 bits (99), Expect = 6e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGG+++R IA L P L++ DEPT+ LD
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 44.0 bits (104), Expect = 8e-05
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAY---SLMSSLKRYAEKEGKTVVV 84
LSGG+++R IA L NP ++L+DEP S LD A L+ LK+ TV++
Sbjct: 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE-----YTVII 203
Query: 85 TVH 87
H
Sbjct: 204 VTH 206
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 44.3 bits (105), Expect = 8e-05
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVTV 86
SGG ++R IA LL P L++ DEPT+ LD +L++ LKR E T ++ +
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR----EFNTAIIMI 218
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH-----NIGL 126
+ + DK+L++ G+T +G+ V F+ +IGL
Sbjct: 219 THDLGVVAGICDKVLVMYAGRTMEYGNARDV--FYQPSHPYSIGL 261
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 45.1 bits (107), Expect = 8e-05
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 29 LSGGEKKRANIAC-----ELLTNPA---LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGK 80
LSGGE+ A++A +LL A L+ LDEP LD L L+ +G+
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS-DGR 874
Query: 81 TVVVTVH 87
+++ H
Sbjct: 875 QIIIISH 881
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 44.1 bits (104), Expect = 8e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
GLSGG+++R +A L P ++LLDEPTS LD A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 45.0 bits (106), Expect = 9e-05
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
+SGG+K+R ++A + +N + + D+P S LD+H A+ + S + E +GKT V+ +Q
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD-ELKGKTRVLVTNQ 799
Query: 89 PSSQIFHMFDKLLLLCNG 106
+ D+++L+ G
Sbjct: 800 --LHFLPLMDRIILVSEG 815
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 43.9 bits (104), Expect = 9e-05
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+K+R IA L P +++LDE TS LD ++ ++++ E++G TV+ H
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.8 bits (103), Expect = 1e-04
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYS---LMSSLKRYAEKEGKTVVV 84
LSGG+++R IA + P ++L+DEPTS LD + LM LK KE V+V
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK----KEYTIVIV 202
Query: 85 TVH-QPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
T + Q +S++ L+ G F T K+
Sbjct: 203 THNMQQASRVSDYTAFFLM---GDLIEFNKTEKI 233
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 43.5 bits (102), Expect = 1e-04
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+++R IA L P L+LLDEPTS LD ++ + LK + +V
Sbjct: 142 ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNM 201
Query: 88 QPSSQI------FHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
Q ++ FH+ G+ FG++ +FF N
Sbjct: 202 QQGKRVADYTAFFHL---------GELIEFGESK---EFFEN 231
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 43.5 bits (103), Expect = 1e-04
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 29/103 (28%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLD--SHAAY-SLMSSLKRYAEKEGKTVVV 84
LSGG+++R IA + P ++LLDEP S LD S L++ L K+ TVV+
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-----KQDYTVVI 210
Query: 85 TVH--QPSSQIFHMFDKLLLLCNGQTAY--------FGDTNKV 117
H Q +++ C+ TA+ FG+T+ +
Sbjct: 211 VTHNMQQAAR-----------CSDYTAFMYLGELIEFGNTDTI 242
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 43.3 bits (102), Expect = 1e-04
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
+SGGE++ I L++ P L+LLDEP+ GL + ++++ E +G T+ + V Q
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFL-VEQ 195
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
++Q + D+ +L NG
Sbjct: 196 NANQALKLADRGYVLENGH 214
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 43.0 bits (102), Expect = 1e-04
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 29 LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGGE +R +A ++ LT L +LDEP+ GL L+ +LKR + G TV+V
Sbjct: 138 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVV 195
Query: 86 VHQP 89
H
Sbjct: 196 EHDE 199
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 44.3 bits (106), Expect = 1e-04
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 23 DYMKRG-----LSGGEKKRANIACELL---TNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74
Y+K G LSGGE +R +A EL T L +LDEPT+GL L+ L R
Sbjct: 820 GYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL 879
Query: 75 AEKEGKTVVVTVH 87
+K G TVVV H
Sbjct: 880 VDK-GNTVVVIEH 891
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 43.9 bits (104), Expect = 2e-04
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
R LSGG +++ IA L +P L+++DEPT G+D A + ++ A + V V
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN-----VAV 456
Query: 87 HQPSS---QIFHMFDKLLLLCNGQ 107
SS +I M D++L++ G+
Sbjct: 457 LFISSDLEEIEQMADRVLVMHQGE 480
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 43.1 bits (102), Expect = 2e-04
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG ++R +A L +P ++L+DE S LD + L K KT+
Sbjct: 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTI 218
Query: 83 VVTVH 87
V H
Sbjct: 219 VFITH 223
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 42.8 bits (101), Expect = 2e-04
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 26/103 (25%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVV 84
GLSGG+++R IA + P ++L+DEP S LD + A L++ L K+ T+V+
Sbjct: 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-----KQDYTIVI 202
Query: 85 TVH--QPSSQIFHMFDKLLLLCNGQTAYF-----GDTNKVVDF 120
H Q ++++ + QTA+F G ++V+
Sbjct: 203 VTHNMQQAARV-----------SDQTAFFNLEATGKPGRLVEI 234
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 43.0 bits (102), Expect = 2e-04
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL---MSS-LKRYAEKEGKTVV- 83
LSGG+++R IA ++ P ++LLDE S LD Y L M + LK K G T V
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALD----YKLRKQMQNELKALQRKLGITFVF 200
Query: 84 VTVHQPSSQIFHMFDKLLLLCNGQ 107
VT Q + M D+++++ +G+
Sbjct: 201 VTHDQ--EEALTMSDRIVVMRDGR 222
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 42.7 bits (100), Expect = 2e-04
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P ++L+DEPTS LD + + + KE T+++ H
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL--KESYTIIIVTHN 208
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
Q + D+ NG T+++ FF+
Sbjct: 209 -MQQAGRISDRTAFFLNGCIEEESSTDEL--FFN 239
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 42.3 bits (100), Expect = 2e-04
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L+ P ++L DEPT+ LD ++S ++ AE G T V+ H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHE 200
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 43.2 bits (102), Expect = 3e-04
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA---YSLMSSLKRYAEKEGKTVVVT 85
LSGG +++ I+ L P +++ DEPT G+D A Y +M L A+ +GK +++
Sbjct: 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL---AD-DGKVILM- 464
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTA 109
V +I + D++ + C G+
Sbjct: 465 VSSELPEIITVCDRIAVFCEGRLT 488
Score = 37.1 bits (86), Expect = 0.020
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGL-DSHAAY--SLMSSLKRYAEKEGKTVVVT 85
LS K+ IA L+ + ++++DEPTS L + Y +M+ L+ KEG +V
Sbjct: 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR----KEGTAIVYI 201
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H+ ++I + D+ ++ +G + G + V
Sbjct: 202 SHK-LAEIRRICDRYTVMKDGSSVCSGMVSDV 232
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 42.1 bits (99), Expect = 3e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA---YSLMSSLKRYAEKEG 79
D++ LSGGE++R +A P ++ DEPT LD L+ SL R + G
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR---EHG 197
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
T+++ H Q+ D+ L L NGQ
Sbjct: 198 TTLILVTHDL--QLAARCDRRLRLVNGQ 223
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 41.9 bits (98), Expect = 3e-04
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKRY 74
T IG+ RG LSGG+++R +A L N ++ LD+P S LD H + LM + ++
Sbjct: 131 QTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF 187
Query: 75 AEKEGKTVVVTVHQ 88
+ + +T+V+ H+
Sbjct: 188 LQDDKRTLVLVTHK 201
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 41.9 bits (99), Expect = 3e-04
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +A L P ++LLDEP LD+ L L+R ++ T V H
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ + D+++++ G+ G ++V D
Sbjct: 197 -QEEALEVADRVVVMNKGRIEQVGTPDEVYD 226
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 42.3 bits (99), Expect = 3e-04
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 23 DYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
D + R SGG+++R IA L P ++LLDEPTS LD ++ + +L K
Sbjct: 139 DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL--KHQ 196
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
T ++ H Q + D+ L NG G T ++
Sbjct: 197 YTFIMVTHN-LQQAGRISDQTAFLMNGDLIEAGPTEEM 233
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 42.3 bits (99), Expect = 3e-04
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L P ++L DEPTS LD + + + L +K+ V+VT +
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-ISTARIEDLIMNLKKDYTIVIVTHNM 213
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
+ + L+ G+ FG T ++ FHN
Sbjct: 214 QQAARISDYTGFFLM--GELIEFGQTRQI---FHN 243
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 41.6 bits (98), Expect = 3e-04
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGEK+R ++ L P ++LLDE TS LD +++ + RY ++ V+ H
Sbjct: 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
Query: 89 PSSQIFHMFDKLLLL 103
+I H DK++ L
Sbjct: 198 -KDEINHA-DKVITL 210
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 42.9 bits (101), Expect = 4e-04
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
LS G+K+RA +A L P ++L+DE + LD A + + A + G T++V
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565
Query: 87 HQP 89
H+P
Sbjct: 566 HRP 568
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 42.3 bits (100), Expect = 4e-04
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ + VL LA H + D + LSGG+++R I L+ P++ LLDEP S LD+
Sbjct: 114 VNQVAEVLQLA---HLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQI--FHMFDKLLLLCNGQTAYFGDTNKVVDFF 121
+ + R ++ G+T++ H Q+ + DK+++L G+ A G K ++ +
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTH---DQVEAMTLADKIVVLDAGRVAQVG---KPLELY 222
Query: 122 H 122
H
Sbjct: 223 H 223
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 41.9 bits (99), Expect = 4e-04
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+++ ++ L P ++LLDE T+ LD A +M + E+ T ++ H
Sbjct: 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 42.2 bits (99), Expect = 5e-04
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
+L +N T++G+ R LSGGE++R IA +L N +++LDE TS LD
Sbjct: 454 ILKRSNGYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 41.6 bits (97), Expect = 6e-04
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGG+++R IA + P ++L+DEPTS LD A + + E + K
Sbjct: 220 DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI---LELKKKYS 276
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
++ V +Q + D+ + G G+T + F H
Sbjct: 277 IIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI--FIH 314
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 41.2 bits (97), Expect = 7e-04
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH- 87
LSGG+++R IA + P ++L+DEP S LD + L ++ K+ T+++ H
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL--KKNYTIIIVTHN 221
Query: 88 -QPSSQI 93
Q +++
Sbjct: 222 MQQAARA 228
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.1 bits (96), Expect = 7e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
GLSGG+++R IA + +P ++L+DEP S LD + + + + KE T+V+ H
Sbjct: 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTIVIVTH 203
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 40.5 bits (95), Expect = 7e-04
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+++ +A LL P +++LDE T+ +D + +++ E T++ H+
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE--EFTNSTILTIAHR 183
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ I +DK+L++ G+ +
Sbjct: 184 LRTII--DYDKILVMDAGEVKEYD 205
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.2 bits (96), Expect = 7e-04
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA + P ++L+DEP S LD + + ++ EK T+++ H
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK--YTIIIVTHN 206
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
Q + D G G+T K+
Sbjct: 207 -MQQAARVSDYTAFFYMGDLVECGETKKI 234
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 40.8 bits (96), Expect = 9e-04
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
+D ++ + L + + + LS G+K+ I L +P L+LLDEP +G+
Sbjct: 128 IDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
LK A K +++V H
Sbjct: 183 TEKTAELLKSLAGK--HSILVVEH 204
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 40.9 bits (96), Expect = 9e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
GLSGG+++R IA L P ++L+DEP S LD
Sbjct: 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 41.7 bits (98), Expect = 9e-04
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS--LKRYAEKEGKTVVVTV 86
LSGG+K R ++A + N + LLD+P S LD+H ++ L A GKT V+
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA---GKTRVLAT 839
Query: 87 HQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
HQ + D ++ L +G+ + G + DF
Sbjct: 840 HQ--VHVVPRADYVVALGDGRVEFSGSS---ADFMR 870
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 41.0 bits (96), Expect = 0.001
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
L+ GE ++ IA L P L++ DEPT+ ++ + L R + T+++ H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
I DK+ +L GQT + ++V H+
Sbjct: 219 LQM-ISQWADKINVLYCGQTVESAPSEELVTMPHH 252
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 40.8 bits (95), Expect = 0.001
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAY---SLMSSLKRYAEKEGKTVVVT 85
LSGG+++R IA + T P ++LLDEP S LD A LM LK+ T+ +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-----DYTIALV 204
Query: 86 VHQPSSQI----FHMFDKLLLLCNGQTAYF---GDTNKVVD 119
H I F + + +T Y G T ++
Sbjct: 205 THNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 41.5 bits (98), Expect = 0.001
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 18 HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKR 73
HT+I + LSGG+++R IA L+ P ++L DE TS LD+ + SL+R
Sbjct: 579 HTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 41.4 bits (97), Expect = 0.001
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 18 HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
TI+ Y + LSGG ++R IA L PA+++ DEPT+ LD ++ L + +K
Sbjct: 159 QTILSRYPHQ-LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL-QLIKVLQK 216
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFH 122
E V+ + + + D++L++ G+ +T V FH
Sbjct: 217 EMSMGVIFITHDMGVVAEIADRVLVMYQGEAV---ETGSVEQIFH 258
Score = 32.1 bits (73), Expect = 0.75
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLD 60
SGG+++R IA L NP +++ DE S LD
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALD 495
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 40.2 bits (95), Expect = 0.001
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
++ ++ + LA+ + G LS G+K+ I L+ +P L+LLDEP +G+
Sbjct: 124 IEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEE 178
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
LK A K +VVV H
Sbjct: 179 TEKTAELLKSLAGK--HSVVVVEH 200
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 40.5 bits (95), Expect = 0.001
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
GLSGG+++R IA + +P ++L+DEP S LD
Sbjct: 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 40.2 bits (94), Expect = 0.001
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 29 LSGGEKKRANIACEL---------LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
LSGGE R A L P +LLDEPT+ LD + L+ +++R A
Sbjct: 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNG 106
V+ VH P+ H D++ +L +G
Sbjct: 206 LGVLAIVHDPNLAARHA-DRIAMLADG 231
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 40.9 bits (96), Expect = 0.001
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 16/95 (16%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKRY 74
T IG+ RG +SGG+K+R ++A + +N + + D+P S LD+H + +K
Sbjct: 731 LTEIGE---RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD- 786
Query: 75 AEKEGKTVVVTVHQPSSQIFHMF---DKLLLLCNG 106
E GKT V+ +Q H D+++L+ G
Sbjct: 787 -ELRGKTRVLVTNQ-----LHFLSQVDRIILVHEG 815
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 39.8 bits (93), Expect = 0.002
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
G SGGEKKR +I + P L +LDE SGLD A
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 39.6 bits (93), Expect = 0.002
Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
I D + R LSGG+++R +A L+ ++LLDEP S LD +++ + + ++
Sbjct: 119 IEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178
Query: 78 EGKTVVVTVHQ--PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
T+++ H +++I + L++ +G+ A+ G T++++
Sbjct: 179 RQLTLLMVSHSLEDAARI---APRSLVVADGRIAWDGPTDELLS 219
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 40.5 bits (95), Expect = 0.002
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89
SGGEK R +A + P L+LLDEPT+ LD +L +L + EG VVV
Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVV----- 483
Query: 90 SSQIFHMF----DKLLLLCNGQTAYF-GD 113
S H+ D L L+ +G+ F GD
Sbjct: 484 -SHDRHLLRSTTDDLYLVHDGKVEPFDGD 511
Score = 39.8 bits (93), Expect = 0.003
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74
SGG + R N+A L+ L+LLDEPT+ LD A L LK Y
Sbjct: 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY 195
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
+SGG+K+R +A LLT+ +++LDE TS LD+ ++++L + KT++ H+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD---KTIIFVAHR 668
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
S + DK+++L +G+
Sbjct: 669 LS--VAKQSDKIIVLDHGK 685
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 39.6 bits (92), Expect = 0.002
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA-------YSLMSSL 71
GLSGG+++R IA L P ++L+DEP S LD A +SL S L
Sbjct: 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSEL 200
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 39.7 bits (92), Expect = 0.002
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 28 GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAY---SLMSSLKRYAEKEGKTVVV 84
LSGG+++R IA L P ++L+DEP S LD + LM LK+ T+ +
Sbjct: 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNY-----TIAI 201
Query: 85 TVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H Q D L G +G T ++
Sbjct: 202 VTHN-MQQAARASDWTGFLLTGDLVEYGRTGEI 233
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+++R +A L P L+LLDEP LD + + E+ G T V+ H
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 39.3 bits (92), Expect = 0.003
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA 64
D +++ L+L + I LSGGE +R IA L + DEP+S LD
Sbjct: 121 DELVDQLELRHVLDRNIDQ-----LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQR 175
Query: 65 YSLMSSLKRYAEKEGKTVVVTVH 87
+ + L R ++ V+V H
Sbjct: 176 LN-AARLIRELAEDDNYVLVVEH 197
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 39.3 bits (91), Expect = 0.003
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+K+R +A + P +++LDE TS LD +M + EK TV+ H
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 38.9 bits (91), Expect = 0.004
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG+K+R +A L P ++LLDEP LD+ L L++ E+ T V H
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 39.2 bits (92), Expect = 0.004
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 27 RGLSGGEKKRANIACELLTNPA-LMLLDEPTSGLD 60
+ LSGGE+ R +A L P+ L++LDEPT+ LD
Sbjct: 439 KALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLD 472
Score = 39.2 bits (92), Expect = 0.005
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGG ++A + L++NP ++LLDEPT+ LD
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 38.7 bits (90), Expect = 0.006
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 21 IGDYMKRGL---SGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
IG ++ + + S G K R A + NP ++++DE S D + + + E+
Sbjct: 133 IGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWNK-SKAAKK 136
GKT+ H SQ+ K L L GQ +GD +VVD + +N+ S +K
Sbjct: 193 -GKTIFFISHS-LSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVEERK 250
Query: 137 CERRSSWLPKRRGFTQ 152
R + G Q
Sbjct: 251 DFREEQISQFQHGLLQ 266
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 38.2 bits (89), Expect = 0.006
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGG+++R IA + P ++L+DEP S LD + LM L KE T+++
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-----KEQYTIIIV 206
Query: 86 VH 87
H
Sbjct: 207 TH 208
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 37.9 bits (88), Expect = 0.007
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK----RYAEKEGKTVVV 84
LSGG+++R IA + P ++L+DEP S LD +S+LK + K+ T+V+
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDP------ISTLKIEETMHELKKNFTIVI 208
Query: 85 TVH 87
H
Sbjct: 209 VTH 211
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 38.0 bits (89), Expect = 0.009
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLD 60
SGG+++R IA L+ +P +++ DEP S LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 37.1 bits (86), Expect = 0.012
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGG++ R + LL P +LLDEP S LD
Sbjct: 135 LSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 34.5 bits (80), Expect = 0.013
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 25 MKRGLSGGEKK-------RANIACELLTN------PALMLLDEPTSGLDSHAAYSLMSSL 71
LSGGEK+ A +A + P L+ LDE + LD SL+ L
Sbjct: 19 DSGTLSGGEKQVLAYLALAAALA-AQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELL 77
Query: 72 KR 73
+
Sbjct: 78 RE 79
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 37.4 bits (87), Expect = 0.013
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG +R IA + P L++ DEPT+ LD ++ L +KE +V+ H
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 37.6 bits (88), Expect = 0.016
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74
LSGGEK R ++ P ++++DEPT+ +D + SL +L++Y
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY 484
Score = 34.1 bits (79), Expect = 0.18
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 32 GEKKRANIACELLTNPALMLLDEPTSGLDSH 62
G K R +A L +NP ++LLDEPT+ LD +
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 37.6 bits (87), Expect = 0.017
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKRYAEKEGKTVVVTVH 87
LSGG+K+R ++A + +N + L D+P S +D+H + + + KT ++ H
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820
Query: 88 QPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
S D ++++ G+ + G +++
Sbjct: 821 GIS--YLPQVDVIIVMSGGKISEMGSYQELLQ 850
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 36.5 bits (84), Expect = 0.018
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+K++ + ++ L LLDEP LD + ++++ ++ + +G V++T HQ
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH-RAKGGAVLLTSHQ 186
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 35.8 bits (82), Expect = 0.018
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELL--TNPALMLLDEPTSGLD 60
Y+D + ++ + II K SG R +A L P +++LDE TS LD
Sbjct: 35 YIDGEDILEEVLDQLLLIIVGGKKASGSGE--LRLRLALALARKLKPDVLILDEITSLLD 92
Query: 61 SHAAYSLMSS-----LKRYAEKEGKTVVVTVHQP----SSQIFHMFDKLLLL 103
+ L+ L ++ TV++T + + + FD+ ++L
Sbjct: 93 AEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVL 144
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 36.7 bits (85), Expect = 0.018
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
L+ G+K+R +A L+ P +++ DE + LD L++ + EK+G + + V Q
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY-VTQ 208
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
I H+ D++L++ G+ G T V
Sbjct: 209 HIGMIKHISDQVLVMHEGEVVERGSTADV 237
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 36.2 bits (84), Expect = 0.027
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
+SGG +R IA LL ++ DEPT+ LD A ++ L+ +K +++ H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 36.3 bits (84), Expect = 0.028
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG ++R +A T ++L+DEP S LD L L K KT+V H
Sbjct: 165 LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSH 223
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 35.7 bits (83), Expect = 0.032
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 29 LSGGEKKRANIACELLTNPAL------MLLDEPTSGLDS-HAAYSLMSSLKRYAEKEGKT 81
SGGEK A++ L + LDEPT+ LD + SL ++ ++
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 82 VVVTVH 87
++V H
Sbjct: 176 LIVITH 181
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 35.6 bits (82), Expect = 0.036
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 19 TIIG-----DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKR 73
I+G D + R LS G+KKR +A L+ L LLDEP + LD + +
Sbjct: 123 AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182
Query: 74 YAEKEGKTVVVT 85
+ G +V T
Sbjct: 183 HLRGGGAALVTT 194
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 36.2 bits (84), Expect = 0.042
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 18 HTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+T +G+ LS G+K+ +A L+ P +++LDE T+ +DS ++ +L A +
Sbjct: 467 YTPLGEQGNN-LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA--AVR 523
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQT 108
E T+VV H+ S+ + D +L+L GQ
Sbjct: 524 EHTTLVVIAHRLSTIV--EADTILVLHRGQA 552
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 35.8 bits (82), Expect = 0.043
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGG+++R IA + P ++L+DEP S LD + L L KE T+++
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-----KEQYTIIMV 216
Query: 86 VH--QPSSQI 93
H Q +S++
Sbjct: 217 THNMQQASRV 226
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 35.8 bits (83), Expect = 0.047
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83
LS GE ++ + L++ P L++LDEP GLD + L L + G T+V
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH-QSGITLV 189
Score = 35.8 bits (83), Expect = 0.056
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LS G+++ A I L+ +P L++LDEP GLD
Sbjct: 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 35.7 bits (82), Expect = 0.055
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G++KR + C L + ++L DE + D L +++GKT+++ H
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH- 529
Query: 89 PSSQIFHMFDKLLLLCNG 106
Q F + D+++ L G
Sbjct: 530 -DDQYFELADQIIKLAAG 546
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 35.0 bits (81), Expect = 0.067
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 8/53 (15%)
Query: 8 INVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
+ +L+ AN Q G+ L+ G+++R IA ++T P +++LDEP +GL+
Sbjct: 141 VGLLEHANRQ---AGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 34.7 bits (80), Expect = 0.087
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 30 SGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89
SGG+ +R IA L+ P L++ DEP S LD +++ L++ + G +++ H
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222
Query: 90 SSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHN 123
+ + H+ D++L++ G G ++V +HN
Sbjct: 223 AV-VKHISDRVLVMYLGHAVELGTYDEV---YHN 252
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 34.9 bits (80), Expect = 0.10
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 29 LSGGEKK------RANIACELLTNPALMLLDEPTSGLD 60
LSGGEK R +A L + +L+++DEPT+ LD
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 33.9 bits (78), Expect = 0.16
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 51 LLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89
L+DEP + L L+ LK+ A+K K +++T H P
Sbjct: 279 LIDEPEAHLHPTLQKELIRFLKKLAKKNNKQIIITTHSP 317
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 33.9 bits (78), Expect = 0.16
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDS 61
+SGG+++R +A L+ P ++L DEP S LD+
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 33.2 bits (77), Expect = 0.19
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+++ +A LL +++LDE T+ +D + +++ + TV+ H+
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE--AFKDCTVLTIAHR 197
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ I D++L+L G+ F
Sbjct: 198 LDT-IID-SDRILVLDKGRVVEFD 219
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 33.3 bits (76), Expect = 0.21
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS--LKRYAEKEGKTVVVTV 86
LSGG++ R ++A + + L LLD P LD + S K A K ++VT
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANK--TRILVT- 216
Query: 87 HQPSSQIFHM--FDKLLLLCNGQTAYFG 112
S++ H+ DK+L+L G + ++G
Sbjct: 217 ----SKMEHLKKADKILILHEGSSYFYG 240
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 33.6 bits (77), Expect = 0.21
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+KKR + LL +++LDE + D L +++GKT+ H
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH- 507
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
F D+LL + NGQ
Sbjct: 508 -DDHYFIHADRLLEMRNGQ 525
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 33.6 bits (77), Expect = 0.25
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 18 HTIIGD--YMKRGLSGGEKKRANIACEL--LTNPALMLLDEPTSGLDSHAAYSLMSSLKR 73
IGD +++ LS NI+ L T +L+L DE +G D +L S+
Sbjct: 370 FADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILE 429
Query: 74 YAEKEGKTVVVTVHQP 89
Y K+ V++T H
Sbjct: 430 YLLKQNAQVLITTHYK 445
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 33.7 bits (77), Expect = 0.30
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD--------SHAAYSLMSSLKRYAEKEGK 80
LSGG++ R ++A + + L LLD P + LD LMS+ R
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTR------- 601
Query: 81 TVVVTVHQPSSQIFHM--FDKLLLLCNGQTAYFGD----TNKVVDFFHNIGLTWNKSKAA 134
++VT S++ H+ DK+LLL G ++G K DF + L ++
Sbjct: 602 -ILVT-----SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDF--SSLLLGLEAFDN 653
Query: 135 KKCERRSSWL 144
ERR+S L
Sbjct: 654 FSAERRNSIL 663
Score = 28.7 bits (64), Expect = 8.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LS G K+ +A +L+ ++LLDEP++ LD
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 32.8 bits (75), Expect = 0.30
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 24 YMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV 83
Y L+ G+K+R +A L+ P +++ DE + LD L++ + EK+G + +
Sbjct: 145 YYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204
Query: 84 VTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
V Q + H+ D++L++ G+ G T V+
Sbjct: 205 Y-VTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 32.5 bits (74), Expect = 0.50
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
L+ GE ++ IA L P L++ DEPT+ ++ + L R + T+++ H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 89 PSSQIFHMFDKLLLLCNGQT 108
+ DK+ +L GQT
Sbjct: 219 -LQMLSQWADKINVLYCGQT 237
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 32.5 bits (75), Expect = 0.50
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
+ + R LSGG+++R + ++ PA+ L DEP S LD
Sbjct: 124 LEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 32.8 bits (75), Expect = 0.51
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 20 IIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
+ D+M LSGGEK+R +A P +LDE TS + + + + G
Sbjct: 575 AVQDWMDV-LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF----G 629
Query: 80 KTVVVTVHQPSSQIFH 95
T+ H+ S +H
Sbjct: 630 ITLFSVSHRKSLWKYH 645
>gnl|CDD|234135 TIGR03172, TIGR03172, probable selenium-dependent hydroxylase
accessory protein YqeC. This uncharacterized protein
family includes YqeC from Escherichia coli. A
phylogenetic profiling analysis shows correlation with
SelD, the selenium donor protein, even in species where
SelD contributes to neither selenocysteine nor
selenouridine biosynthesis. Instead, this family, and
families TIGR03309 and TIGR03310 appear to mark
selenium-dependent molybdenum hydroxylase maturation
systems [Unknown function, General].
Length = 210
Score = 31.1 bits (71), Expect = 0.96
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 66 SLMSSLKRYAEKEGKTVVVT 85
+LM +L R KEGK V+VT
Sbjct: 12 TLMFALARELRKEGKPVLVT 31
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 31.3 bits (71), Expect = 1.0
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 25 MKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84
M LSGG +RA +A + P L++ DEP G D L+ + G T VV
Sbjct: 140 MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV 199
Query: 85 TVH 87
H
Sbjct: 200 VSH 202
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 31.4 bits (72), Expect = 1.2
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD---SHAAYSLMSSLKRYAEKEGKTVVVT 85
LSGG +++A + L + ++LLDEPT G+D H Y+++ L A + G V+
Sbjct: 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL---AAQ-GVAVLFV 452
Query: 86 VHQPSS---QIFHMFDKLLLLCNGQTA 109
SS ++ + D+++++ G+ A
Sbjct: 453 ----SSDLPEVLGVADRIVVMREGRIA 475
Score = 29.9 bits (68), Expect = 4.0
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+++ IA L N ++ DEPTS L + L ++ EG+ V++ V
Sbjct: 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL-RAEGR-VILYVSH 198
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+IF + D + + +G+
Sbjct: 199 RMEEIFALCDAITVFKDGR 217
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.2 bits (71), Expect = 1.4
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 29 LSGGEKK------RANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE+ R ++ L N L++LDEPT LD L+ ++RY K + +
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVI 848
Query: 83 VVT 85
+V+
Sbjct: 849 IVS 851
>gnl|CDD|226645 COG4177, LivM, ABC-type branched-chain amino acid transport system,
permease component [Amino acid transport and
metabolism].
Length = 314
Score = 30.3 bits (69), Expect = 2.1
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 293 GAYRLSAYYLAKMVGELPLTITLPAVY-------HLISYPMLGLQSPTVFITLLGFLLLN 345
GAY +A LA+++G L + L L+ P L L+ + I L F +
Sbjct: 66 GAY-TAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPALRLRGDYLAIVTLAFGEIF 124
Query: 346 SIVAQSVGFFVG 357
I+ + G
Sbjct: 125 RILLLNATELTG 136
>gnl|CDD|227046 COG4702, COG4702, Uncharacterized conserved protein [Function
unknown].
Length = 168
Score = 29.7 bits (67), Expect = 2.4
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 57 SGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFH 95
S D A+SL + ++R A+K + + + Q+F+
Sbjct: 24 SSFDYADAFSLGTYIRRAAKKNKLPIAIDITLNGHQLFY 62
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 30.7 bits (69), Expect = 2.4
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 29 LSGGEKKRANIA---CELLTNP-----ALMLLDEPTSGLDSHAAYSLMSSLKRYAEK-EG 79
LS GEK +L NP ++++D+P S DS+ + + +K EK
Sbjct: 530 LSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVK--EEKTNI 587
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVDFFHNIGLTWNKSK 132
K V+V H + + + L + + G + F I N SK
Sbjct: 588 KQVIVLTHNT-----YFYRDITLELDLKRYNKGKYS-----FWIIKKDNNVSK 630
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 30.1 bits (68), Expect = 2.4
Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 26/150 (17%)
Query: 260 MFFSTTFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVY 319
M + FW+L+ F L + L G Y+ L G L L +++ +++
Sbjct: 201 MLRTPQFWVLYLSF-FLNAVS-------GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIF 252
Query: 320 HLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCM-------DMQSVGFFVGA 372
+ P LG S + S+ F + A M + V F
Sbjct: 253 NGGGRPFLGALSDK----------IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV 302
Query: 373 CCMDMQVSITISALYTLATQLFG-GYLATN 401
+ TIS +L + +FG A N
Sbjct: 303 ALVFFTWGGTISLFPSLVSDIFGPANSAAN 332
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 30.3 bits (69), Expect = 2.6
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G+KKR + L ++LLDE + D H L ++ GKT+ H
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
F D+LL + NGQ
Sbjct: 510 DH--YFIHADRLLEMRNGQ 526
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1. A
subgroup of PA-domain containing proteins. Proteins in
this subgroup contain a RING-finger (Really Interesting
New Gene) domain C-terminal to this PA domain. The PA
domain is an insert domain in a diverse fraction of
proteases. The significance of the PA domain to many of
the proteins in which it is inserted is undetermined. It
may be a protein-protein interaction domain. At
peptidase active sites, the PA domain may participate in
substrate binding and/or promoting conformational
changes, which influence the stability and accessibility
of the site to substrate. Proteins in this group contain
a C-terminal RING-finger domain. Proteins into which the
PA domain is inserted include the following: i) various
signal peptide peptidases: such as hSPPL2a and 2b, ii)
various E3 ubiquitin ligases similar to human GRAIL
(gene related to anergy in lymphocytes) protein, iii)
various proteins containing a RING finger motif such as
Arabidopsis ReMembR-H2 protein, iv) EDEM3
(ER-degradation-enhancing mannosidase-like 3 protein),
v) various plant vacuolar sorting receptors such as
Pisum sativum BP-80, vi) prostate-specific membrane
antigen (PSMA), vii) yeast aminopeptidase Y viii) Vibrio
metschnikovii VapT, a sodium dodecyl sulfate (SDS)
resistant extracellular alkaline serine protease, ix)
various subtilisin-like proteases such as Cucumisin from
the juice of melon fruits, and x) human TfR (transferrin
receptor) 1 and human TfR2. The proteins listed above
belong to other subgroups; relatively little is known
about proteins in this subgroup.
Length = 117
Score = 28.5 bits (64), Expect = 3.4
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 329 LQSPTVFITLLGFLLLNSIVAQSVGF 354
+ P +F + + LL+S++ +S+
Sbjct: 90 VTIPAMFTSRTSYHLLSSLLPKSLIL 115
>gnl|CDD|233768 TIGR02185, Trep_Strep, conserved hypothetical integral membrane
protein TIGR02185. This family consists of strongly
hydrophobic proteins about 190 amino acids in length
with a strongly basic motif near the C-terminus. If is
found in rather few species, but in paralogous families
of 12 members in the oral pathogenic spirochaete
Treponema denticola and 2 in Streptococcus pneumoniae R6
[Cell envelope, Other].
Length = 189
Score = 28.8 bits (65), Expect = 4.6
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 24/145 (16%)
Query: 297 LSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLL------GFLLLNSIVAQ 350
L+A Y A LT+T HL S + +F ++ G + + I+
Sbjct: 12 LTAIYFAIQFIVGMLTMTTGFFAHLFSPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLG 71
Query: 351 SVGFFVGACCMDMQSVGFFVGACCMDM-------QVSITISALYTL--ATQLFGGYLATN 401
+ F +G + + +G D+ + ++ Y L G
Sbjct: 72 LLFFLMGMYWPMI--ISSIIGGLLADIIASTGGYKNKRKVTIAYVLFFLLVAMGPI---- 125
Query: 402 IPYWLKWMQYLSMVHYAYQNMQIVE 426
+P WL +Y + + E
Sbjct: 126 LPIWLFKDEY---IAFFAARGDSAE 147
>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family.
Length = 263
Score = 28.8 bits (65), Expect = 5.7
Identities = 39/243 (16%), Positives = 72/243 (29%), Gaps = 54/243 (22%)
Query: 262 FSTTFWMLFAHFGALASFPPEREVINKERLSGAYRL--------SAYYLAKMVG----EL 309
S L A+ + I E+ G +L S L K++G L
Sbjct: 61 GSGIIAFLIPLIAAVLGS----DAIAGEKERGTLKLLLSRPVSRSEILLGKLIGLLAVGL 116
Query: 310 PLTITLPAVYHLISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFF 369
L I + L L LL +L + ++ ++ F S+G
Sbjct: 117 ILAIAILVGVLLALAVTAALGDSLSLGDLLLLVLASVLLLLALLFL---------SLGLL 167
Query: 370 VGACCMDMQVSITISALYTLATQLFGGYLATNIPYWLKWMQYLSMVHYAYQNMQIVEFSE 429
+ + + + G L I + + +L ++
Sbjct: 168 ISTVLRSTATAAAAALGLFFVLSILSGILLAGILKLEELLDFLLFLNP------------ 215
Query: 430 GLPIQCATQSKFDACANSTYIPVDAILESQGSSLPLWCNTLILIGFLVFFRTLGYIVLRY 489
S ++ + IL + L W N LIL+ ++ F L Y + +
Sbjct: 216 --------TSPYNTL-------LQEILATDDFLLSTWTNLLILLAYIAVFLALAY--VLF 258
Query: 490 FRR 492
R+
Sbjct: 259 KRK 261
>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function
unknown].
Length = 222
Score = 28.4 bits (64), Expect = 6.9
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 23/87 (26%)
Query: 292 SGAYRLSAYYLAKMVGELPLTITLPAVYHLISY-----------------------PMLG 328
GA RL Y+L ++ LPL ITL V + P LG
Sbjct: 1 KGAKRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLG 60
Query: 329 LQSPTVFITLLGFLLLNSIVAQSVGFF 355
+ + I LLGFL N I +
Sbjct: 61 VILAIILIFLLGFLARNMIGRSLLSLG 87
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 28.4 bits (64), Expect = 7.2
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 27 RGLSGGEKKRANIA-----CELLTNPA-----LMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
LSGGE A+++ E+L N + +DE LD A ++ ++L+
Sbjct: 122 STLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT 181
Query: 77 KEGKTVVVTVHQP 89
E + V V H
Sbjct: 182 -ENRMVGVISHVE 193
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 28.6 bits (64), Expect = 7.3
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 44 LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQP 89
+ +LDEP + L L++ L+ A+ G +++ H P
Sbjct: 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSP 188
>gnl|CDD|130314 TIGR01247, drrB, daunorubicin resistance ABC transporter membrane
protein. This model describes daunorubicin resistance
ABC transporter, membrane associated protein in bacteria
and archaea. The protein associated with effux of the
drug, daunorubicin. This transport system belong to the
larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. In eukaryotes proteins of similar function
include p-gyco proteins, multidrug resistance protein
etc [Transport and binding proteins, Other].
Length = 236
Score = 28.2 bits (63), Expect = 9.0
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 347 IVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGG--YLATNIPY 404
I + F VG + + +G + A M+ I ++ L G Y T +P
Sbjct: 127 IPTLVLAFIVG---VALSGLGVAIAARMDSMEGFQIIMSMLMLPMFFLSGAFYPITTMPA 183
Query: 405 WLKWMQYLSMVHYA 418
W++ + ++ + YA
Sbjct: 184 WMQGLAKINPLTYA 197
>gnl|CDD|224650 COG1736, DPH2, Diphthamide synthase subunit DPH2 [Translation,
ribosomal structure and biogenesis].
Length = 347
Score = 28.5 bits (64), Expect = 9.0
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV----DF 120
L+ +K E G VV+ Q + +L CN D + V+
Sbjct: 134 VHLLEEVKEILEGRGYEVVIG----RGQTRPAYPGQVLGCNFSVLEGVDADAVLYVGSGR 189
Query: 121 FHNIGLT 127
FH +GL
Sbjct: 190 FHPLGLA 196
>gnl|CDD|200403 TIGR04152, exosort_VPLPA, exosortase D, VPLPA-CTERM-specific. This
model describes a variant sub class, exosortase D, of
protein sorting enzyme (see parent exosortase model
TIGR02602), specific for the VPLPA-CTERM variant
(TIGR03370) of the PEP-CTERM protein sorting signal
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 486
Score = 28.4 bits (64), Expect = 9.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 250 EEALHDIQGWMFFSTTFWMLFA 271
E LHD +GW+ F +LF
Sbjct: 216 EGFLHDFEGWVIFLACIAILFG 237
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.432
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,964,788
Number of extensions: 2376178
Number of successful extensions: 3519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3415
Number of HSP's successfully gapped: 417
Length of query: 494
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 393
Effective length of database: 6,457,848
Effective search space: 2537934264
Effective search space used: 2537934264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.7 bits)