RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16346
(494 letters)
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 83.8 bits (208), Expect = 2e-18
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 21 IGDYMKRG---LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+ KR LSGG+++ IA + + L+LLDEPTS LD ++S L A+
Sbjct: 118 LTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS 177
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+ TVV T HQP +Q+ + +K LLL N Q FG+T ++
Sbjct: 178 QNMTVVFTTHQP-NQVVAIANKTLLL-NKQNFKFGETRNIL 216
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 78.8 bits (195), Expect = 2e-16
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA-EKEGKTVVVT 85
LS GEK+R IA L+ P +++LDEP +GLD A SL+S L + ++
Sbjct: 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYV 219
Query: 86 VHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
H +I F K+LLL +GQ+ G +
Sbjct: 220 THFI-EEITANFSKILLLKDGQSIQQGAVEDI 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 75.3 bits (186), Expect = 2e-15
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 21 IGDYMKRG---LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
I + LS G+KKR IA L+ P +++LDEPT+GLD +M L ++
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV---VDFFHNIGL 126
G T+++ H + D + ++ G+ G+ +V + + L
Sbjct: 193 LGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNL 243
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 74.9 bits (185), Expect = 2e-15
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ + L + Y S G ++ IA L+ NP L +LDEPTSGLD
Sbjct: 127 VERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
A + LK+ + +EG T++V+ H
Sbjct: 182 AREVRKILKQAS-QEGLTILVSSH 204
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 73.8 bits (182), Expect = 6e-15
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 23 DYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEG 79
+ R LSGGEK+R IA ++ P +++LDEP GLD L+ ++++ G
Sbjct: 130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-LG 188
Query: 80 KTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKV 117
KTV++ H + + D++++L G+ + G +
Sbjct: 189 KTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 75.5 bits (186), Expect = 1e-14
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 3 YVDHIINVLDLANCQHTIIGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGL 59
+ ++ L + D + + LSGGE +R I L + L+DEP++ L
Sbjct: 447 FQTDVVKPLRID--------DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498
Query: 60 DSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
DS ++R+ KT + H
Sbjct: 499 DSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 60.8 bits (148), Expect = 5e-10
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V I +L L N ++ +++ LSGGE +R I + + + DEP+S LD
Sbjct: 202 VKRYIKILQLEN----VLKRDIEK-LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQ 256
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
+ ++ K V+ H
Sbjct: 257 RLNAAQIIRSLLA-PTKYVICVEH 279
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 71.0 bits (175), Expect = 2e-14
Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
+ + +++ + + + LS G +R +A LL N + +LD+P +D +
Sbjct: 115 IMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
+ ++ S+ +++G ++ + D L
Sbjct: 169 KHKVLKSILEILKEKGIVIISSRE-----ELSYCDVNENLHKYS 207
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 73.1 bits (180), Expect = 6e-14
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
I D R LSGGE +R IA LL + + LLDEP++ LD ++ +++ EK
Sbjct: 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 520
Query: 78 EGKTVVVTVH 87
KT +V H
Sbjct: 521 NEKTALVVEH 530
Score = 57.7 bits (140), Expect = 5e-09
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA---AYSLMSSLKRYAEKEGKTVVVT 85
LSGGE +R IA LL DEP+S LD ++ L EGK V+V
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN----EGKAVLVV 284
Query: 86 VH 87
H
Sbjct: 285 EH 286
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 69.7 bits (171), Expect = 7e-13
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTS 57
+ + + L+L ++ LSGGE ++ IA L L +LD+P+S
Sbjct: 363 SWFFEEVTKRLNLH--------RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSS 414
Query: 58 GLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LD Y + ++KR + + H
Sbjct: 415 YLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Score = 63.9 bits (156), Expect = 5e-11
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
D + +L++ N + LSGG +R +A LL + + D+P+S LD
Sbjct: 119 KDEVKELLNMTN----LWNKDANI-LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE 173
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
++ +++ + K V+V H
Sbjct: 174 RMNMAKAIREL--LKNKYVIVVDH 195
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 67.2 bits (165), Expect = 8e-13
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 19 TIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
TI+G+ +G LSGGE++R IA LL +P +++ DE TS LDS Y +++
Sbjct: 147 TIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR- 202
Query: 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
+ +T+++ H+ S+ I + ++LL G+
Sbjct: 203 -KNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 68.5 bits (168), Expect = 2e-12
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
I D R LSGGE +R IA LL + + LLDEP++ LD ++ +++ EK
Sbjct: 391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 450
Query: 78 EGKTVVVTVH 87
KT +V H
Sbjct: 451 NEKTALVVEH 460
Score = 56.1 bits (136), Expect = 1e-08
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
++ ++ L+L N ++ ++ LSGGE +R IA LL N DEP+S LD
Sbjct: 139 LEEVVKALELEN----VLEREIQH-LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 64 ---AYSLMSSLKRYAEKEGKTVVVTVH 87
A + L +EGK+V+V H
Sbjct: 194 RLNAARAIRRLS----EEGKSVLVVEH 216
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 65.7 bits (161), Expect = 2e-12
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 29 LSGGEKKRANIA-------CELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81
LSGGE +R +A + L+LLDEP + LD +L L ++ +G
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-QGLA 185
Query: 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+V++ H + + LL G+ G +V+
Sbjct: 186 IVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 221
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 66.5 bits (163), Expect = 3e-12
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 19 TIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
T +G+ RG LSGGEK+R IA +L P ++LLDE TS LD+ ++ +SL +
Sbjct: 182 TQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC- 237
Query: 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQ 107
+T +V H+ S + + D++L++ +G
Sbjct: 238 -ANRTTIVVAHR-LSTVVNA-DQILVIKDGC 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 63.7 bits (156), Expect = 8e-12
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++R IA L P L+ DEPT LDS +M + E G ++V+ H+
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE-GGTSIVMVTHE 199
Query: 89 P-----SSQIFHMFD 98
+ + M D
Sbjct: 200 RELAELTHRTLEMKD 214
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 60.9 bits (148), Expect = 2e-11
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 23 DYMKRG-----LSGGEKKRANIACEL------LTNPALMLLDEPTSGLDSHAAYSLMSSL 71
+ + LSGGE+ +A L +L++LDEPT LD L++ +
Sbjct: 47 VWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 106
Query: 72 KRYAEKEGKTVVVTVH 87
+RY +K V++ H
Sbjct: 107 ERYLKK-IPQVILVSH 121
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 62.9 bits (154), Expect = 2e-11
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L NP ++L D+PT LDS +M LK+ E++GKTVVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 89 P-----SSQIFHMFD 98
+I ++ D
Sbjct: 206 INVARFGERIIYLKD 220
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 60.6 bits (148), Expect = 1e-10
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 7/72 (9%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
+TI+G+ +G LSGG+++R IA L+ NP +++ DE TS LD + + +M ++ +
Sbjct: 136 NTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 192
Query: 76 EKEGKTVVVTVH 87
+G+TV++ H
Sbjct: 193 --KGRTVIIIAH 202
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 60.2 bits (147), Expect = 2e-10
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
T +G+ G LSGG+++ +A L+ P L++LD TS LD+ + L
Sbjct: 147 DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESP 203
Query: 76 EKEGKTVVVTVH 87
E +TV++
Sbjct: 204 EWASRTVLLITQ 215
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 62.0 bits (150), Expect = 3e-10
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 27 RGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTV 86
RGLSGG+K + +A P L++LDEPT+ LD + +L +LK + EG +++T
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIIT- 955
Query: 87 HQPSSQIF--HMFDKLLLLCNGQTAYFG 112
H S F ++ +++ + +G+ G
Sbjct: 956 H---SAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 58.9 bits (142), Expect = 2e-09
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LSGG K + +A +L N ++LLDEPT+ LD+ L++ L G T + H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC----GITSITISH 603
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 60.4 bits (146), Expect = 3e-10
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 29 LSGGEKKRANIACEL------LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE+ +A L +L++LDEPT LD L++ ++RY +K V
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQV 307
Query: 83 VVTVHQPSSQIFHMFDKLLLL 103
++ H ++ D ++ +
Sbjct: 308 ILVSHDE--ELKDAADHVIRI 326
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 58.6 bits (143), Expect = 5e-10
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 19 TIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
T +G+ RG +SGG+++R IA L NP +++LDE T+ LDS + + +L
Sbjct: 131 TEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM- 186
Query: 77 KEGKTVVVTVH 87
+G+T +V H
Sbjct: 187 -KGRTTLVIAH 196
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 58.9 bits (143), Expect = 6e-10
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LS G+ + L + P ++ LDEP +D+ + + +K Y GK ++ H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY----GKEGILVTH 183
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 57.4 bits (139), Expect = 8e-09
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 5 DHIINVLDLANCQH-----------TIIGDYMKRG--LSGGEKKRANIACELLTNPALML 51
+ I+ AN H T +GD +G LSGG+K+R IA L+ P ++L
Sbjct: 1139 EEIVRAAKEANI-HQFIDSLPDKYNTRVGD---KGTQLSGGQKQRIAIARALVRQPHILL 1194
Query: 52 LDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVH 87
LDE TS LD+ + + +L + EG+T +V H
Sbjct: 1195 LDEATSALDTESEKVVQEALDKAR--EGRTCIVIAH 1228
Score = 56.6 bits (137), Expect = 2e-08
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 17/96 (17%)
Query: 7 IINVLDLANCQ----------HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDE 54
I + AN T++G+ RG LSGG+K+R IA L+ NP ++LLDE
Sbjct: 496 IEKAVKEANAYDFIMKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDE 552
Query: 55 PTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPS 90
TS LD+ + + ++L + EG+T +V H+ S
Sbjct: 553 ATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLS 586
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 53.9 bits (130), Expect = 5e-08
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+K+R IA L +NP ++L D+ TS LD S++ LK + G T+++ H+
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 52.0 bits (125), Expect = 2e-07
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 19 TIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-----L 71
++G+ G LSGG++ R ++A + + L LLD P LD + S +
Sbjct: 151 IVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 72 KRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
KT ++ + + DK+L+L G + ++G
Sbjct: 208 A------NKTRILVTSK--MEHLKKADKILILHEGSSYFYG 240
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 50.6 bits (122), Expect = 2e-07
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSL-----MSS 70
+ ++G+ G LSGG++ R ++A + + L LLD P LD +
Sbjct: 121 NIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177
Query: 71 LKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ KT ++ + + DK+L+L G + ++G
Sbjct: 178 MA------NKTRILVTSK--MEHLKKADKILILHEGSSYFYG 211
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 49.9 bits (120), Expect = 5e-07
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSS-LKRY 74
T IG+ +G LSGG+K+R ++A + +N + L D+P S +D+H + + +
Sbjct: 118 RTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPK 174
Query: 75 AEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ KT ++ H D ++++ G+ + G
Sbjct: 175 GMLKNKTRILVTHS--MSYLPQVDVIIVMSGGKISEMG 210
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 50.7 bits (122), Expect = 7e-07
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 21/79 (26%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSH-------AAYSLM 68
TIIG+ G LSGG+++R IA LL + +++LDE TS LD+ A L
Sbjct: 471 DTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 69 SSLKRYAEKEGKTVVVTVH 87
+ +T +V H
Sbjct: 528 ---------KNRTSLVIAH 537
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 50.7 bits (122), Expect = 8e-07
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 31/100 (31%)
Query: 7 IINVLDLANCQ----------HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDE 54
I V ++AN +T++G+ +G LSGG+K+R IA LL NP ++LLDE
Sbjct: 453 IQRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRIAIARALLKNPKILLLDE 509
Query: 55 PTSGLDS-------HAAYSLMSSLKRYAEKEGKTVVVTVH 87
TS LD+ A LM +G+TV+V H
Sbjct: 510 ATSALDAENEYLVQEALDRLM---------DGRTVLVIAH 540
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 50.3 bits (121), Expect = 1e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
T+IG+ G LSGG+++R IA LL + +++LDE TS LD+ + ++ ++L
Sbjct: 471 DTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527
Query: 76 EKEGKTVVVTVH 87
+ KTV+V H
Sbjct: 528 --KNKTVLVIAH 537
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 49.9 bits (120), Expect = 1e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 18 HTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
T +G+ RG LSGG+K+R +IA L NP +++LDE TS LD + + +L +
Sbjct: 468 DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524
Query: 76 EKEGKTVVVTVH 87
+ +T ++ H
Sbjct: 525 --KDRTTLIVAH 534
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 48.4 bits (116), Expect = 2e-06
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGG+ +R IA L P +ML DEPTS LD
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 48.3 bits (116), Expect = 2e-06
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
LSGG+++R +IA L P ++L DEPTS LD
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 47.5 bits (114), Expect = 3e-06
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 23 DYMKR----GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKE 78
Y+ R G SGGEKKR I L+ P +LDE SGLD A + +
Sbjct: 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPN 193
Query: 79 GKTVVVTVHQ 88
+V+T +Q
Sbjct: 194 FGALVITHYQ 203
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 46.8 bits (112), Expect = 6e-06
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 23 DYMKRGL----SGGEKKRANIACELLTNPALMLLDEPTSGLD 60
D + R + SGGEKKR +I + P L +LDE SGLD
Sbjct: 155 DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 1e-05
Identities = 43/348 (12%), Positives = 93/348 (26%), Gaps = 123/348 (35%)
Query: 182 QSHASSSVSSSYDDM--SWQWPTSFWTQFKVLSQRNFQEARPRMLSTLNWVQ------TI 233
++++ ++ S+ + PT+ + L Q F + P T +
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQL-QEQFNKILPE--PTEGFAADDEPTTPA 58
Query: 234 GLGIMAGLLWF--------QLPRTEEALHDIQGWMFFSTTFWMLFA---HFGALASFPPE 282
L + L + ++ + ++ L+ F + L H A E
Sbjct: 59 EL--VGKFLGYVSSLVEPSKVGQFDQVLNLC--LTEFENCY--LEGNDIH-ALAAKLLQE 111
Query: 283 REVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLISYPMLGLQSPTVFITLLGFL 342
+ + + Y A+++ + P +
Sbjct: 112 ND---TTLVKTKELIKNYITARIMAKRPFDKKSNS------------------------A 144
Query: 343 LLNSIVAQSVGFFVGACCMDMQSVGFFVGACCMDMQVSITISALYTLATQLFGGYLATNI 402
L ++ + +FGG N
Sbjct: 145 LFRAVGEGNAQLVA------------------------------------IFGG--QGNT 166
Query: 403 PYWLKWMQYLSMVHYA-YQNM--QIVEFSEGLPIQCATQSK---------FDACA---NS 447
+ + ++ L Y Y + +++FS + + + N
Sbjct: 167 DDYFEELRDL----YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 448 TYIPVDAILESQGSSLPLWCNTLI-LIGFLVFFRTLGYIVLRYFRRPG 494
+ P L S S PL +I L ++V + LG+ PG
Sbjct: 223 SNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGF-------TPG 261
Score = 34.3 bits (78), Expect = 0.10
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 47/139 (33%)
Query: 314 TLPAVYHL----ISYPMLGLQSPTVFITLLGFLLLNSIVAQSVGFFVGACCMDMQSVGFF 369
P +L IS P++G+ I L ++ + A+ +GF G +++S
Sbjct: 224 NTPDKDYLLSIPISCPLIGV------IQLAHYV----VTAKLLGFTPG----ELRSY--L 267
Query: 370 VGA--CCMDMQVSITISA------LYTLATQLFGGYLATNIPYWLKWMQYLSMVHYAYQN 421
GA + ++ I+ + + + L ++ + AY N
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRK----AIT-----VLFFIGVRC--YEAYPN 316
Query: 422 MQI--------VEFSEGLP 432
+ +E +EG+P
Sbjct: 317 TSLPPSILEDSLENNEGVP 335
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 45.9 bits (110), Expect = 3e-05
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 23 DYMKRG-----LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74
Y+K G LSGGE +R +A EL T L +LDEPT GL L+ L R
Sbjct: 795 GYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854
Query: 75 AEKEGKTVVVTVH 87
++ G TV+V H
Sbjct: 855 VDR-GNTVIVIEH 866
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 44.8 bits (107), Expect = 3e-05
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
I+ L L++ G+ LSGG+ K I L+TNP ++++DEP +G+
Sbjct: 134 AFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 64 AYSLMSSLKRYAEKEGKTVVV 84
A+ + + + +G T ++
Sbjct: 189 AHDIFNHVLELKA-KGITFLI 208
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 44.8 bits (106), Expect = 4e-05
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 29 LSGGEKKRANIA-----CELLTNPAL--MLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81
LSGGE+ ++ L + ++LDEPT LD + L ++ + +
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK-VKSIPQM 339
Query: 82 VVVTVHQPSSQIFHMFDKLL 101
+++T H ++ + D ++
Sbjct: 340 IIIT-HHR--ELEDVADVII 356
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 44.8 bits (107), Expect = 5e-05
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 24 YMKRG-----LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
YMK G LSGGE +R +A EL L +LDEPT+GL L+ L R
Sbjct: 534 YMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV 593
Query: 76 EKEGKTVVVTVH 87
+ G TV+V H
Sbjct: 594 DN-GDTVLVIEH 604
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 44.8 bits (107), Expect = 6e-05
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 24 YMKRG-----LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYA 75
Y++ G LSGGE +R +A EL + +LDEPT+GL L L +
Sbjct: 721 YLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV 780
Query: 76 EKEGKTVVVTVH 87
+ G TV+ H
Sbjct: 781 DA-GNTVIAVEH 791
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 43.3 bits (103), Expect = 6e-05
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV-VT 85
LSGGE++R +A L+ P L+LLDEP S +D LM L+ + ++ VT
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 7e-05
Identities = 57/419 (13%), Positives = 122/419 (29%), Gaps = 117/419 (27%)
Query: 113 DTNKVVDFFHNIGLTWN------KSKAAKKCERRSSWLPKRRG------FTQAIPKNCNH 160
D V D +I L+ SK A R W + F + + + N+
Sbjct: 34 DCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-NY 91
Query: 161 NTFPMPTLSEEEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQFKVLSQRNFQEAR 220
F M + E +Q + ++ + D + F ++ V + + + R
Sbjct: 92 K-FLMSPIKTE--QRQPSMMTRMY------IEQRDRLYNDNQVF-AKYNVSRLQPYLKLR 141
Query: 221 PRMLSTLNWVQTIGL-GIMAG-----LLWFQLPRTEEAL--HDIQGWMFFSTTFWMLFAH 272
+ L L + + + G + G + + + +Q M F FW+ +
Sbjct: 142 -QALLELRPAKNVLIDG-VLGSGKTWV-------ALDVCLSYKVQCKMDFKI-FWL---N 188
Query: 273 FGALASFPPEREVINKERLSGAYRLSAYYLAKMVGELPLTITLPAVYHLIS-------YP 325
S PE + ++L Y++ + ++ + + + ++ + Y
Sbjct: 189 LKNCNS--PETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 326 ----------------MLGLQSPTVFIT----LLGFLLLN-----SIVAQSVGFFVGACC 360
L + T + FL S+ S+
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------ 298
Query: 361 MDMQSVGFFVGACCMDMQVS------ITISALYTLATQLFGGYLATNIPYWLKWMQYLSM 414
+ +D + +T + + + + W W
Sbjct: 299 TPDEVKSLL--LKYLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATWDNWKHVNCD 353
Query: 415 VHYAYQNMQIVEFS-EGL-PIQCATQSKFDACA---NSTYIPVDAILESQGSSLPLWCN 468
+ I+E S L P + + FD + S +IP +L +W +
Sbjct: 354 -----KLTTIIESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTI-LLSL------IWFD 398
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 44.0 bits (105), Expect = 1e-04
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 23 DYMKRG-----LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74
YMK G LSGGE +R +A EL L +LDEPT+GL L+ L R
Sbjct: 835 GYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 894
Query: 75 AEKEGKTVVVTVH 87
+ G TV+V H
Sbjct: 895 VDN-GDTVLVIEH 906
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 43.7 bits (104), Expect = 1e-04
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 23 DYMKRG-----LSGGEKKRANIACEL---LTNPALMLLDEPTSGLDSHAAYSLMSSLKRY 74
Y++ G LSGGE +R +A EL T + +LDEPT+GL L++ +
Sbjct: 853 GYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL 912
Query: 75 AEKEGKTVVVTVH 87
+K G TV+V H
Sbjct: 913 VDK-GNTVIVIEH 924
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 42.9 bits (102), Expect = 1e-04
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV-VT 85
LSGG+++RA +A L +P L+LLDEP S LD + + GK+ V V+
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 41.0 bits (97), Expect = 5e-04
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 21 IGDYMKRG---LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
I + R LSGGE++R +A L+TNP ++LLDEP S LD + L +K
Sbjct: 117 IEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176
Query: 78 EGKTVV-VT 85
TV+ +T
Sbjct: 177 NKLTVLHIT 185
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 39.1 bits (92), Expect = 0.003
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
SGG+K+R +IA L+ P +++LD+ TS +D ++ LKRY + Q
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---KGCTTFIITQ 536
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
DK+L+L G+ A FG
Sbjct: 537 KIPTALLA-DKILVLHEGKVAGFG 559
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 38.4 bits (90), Expect = 0.004
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVV-VT 85
LSGG+++R +A L P ++L DEP + +D+ L + +++ ++ G T V VT
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 37.4 bits (88), Expect = 0.006
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGL 59
LSGGE++ I L++ P L+++DEP+ GL
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 36.5 bits (85), Expect = 0.018
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
I + LSG +++R +A L+ +P+L+LLDEP S LD
Sbjct: 130 IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 36.4 bits (84), Expect = 0.018
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 29 LSGGEKKRANIA-----CELLTNPA-LMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
LSGGE+ +I+ E+ + +DE S LD+ + S LK E+ K +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL-ERLNKVI 338
Query: 83 VVTVH 87
V H
Sbjct: 339 VFITH 343
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 36.0 bits (84), Expect = 0.030
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 23/96 (23%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRG--LSGGEKKRANIACELLTNPALMLLDEPTSG 58
+T+ DH I L T++ D G LS G+++ I L NP +++LDE TS
Sbjct: 467 LTHSDHFIK--HLPEGYETVLTD---NGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521
Query: 59 LDS-------HAAYSLMSSLKRYAEKEGKTVVVTVH 87
+D+ A + LM EGKT ++ H
Sbjct: 522 VDTKTEKSIQAAMWKLM---------EGKTSIIIAH 548
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 34.3 bits (79), Expect = 0.084
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LS G K+ +A +L+ ++LLDEP++ LD + +LK+ TV++ +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ--AFADCTVILCEAR 213
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFG 112
+ + D+ L++ + +
Sbjct: 214 IEAML--ECDQFLVIEENKVRQYD 235
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 34.1 bits (79), Expect = 0.084
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
I + R LSGG+++R IA L+ P ++LLDEP S LD
Sbjct: 123 IDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 33.3 bits (77), Expect = 0.16
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
I + + R LSGG+++R +A L+ P ++L DEP S LD
Sbjct: 123 IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 33.4 bits (77), Expect = 0.17
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
I + + R LSGG+++R +A ++ P ++L+DEP S LD
Sbjct: 131 IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>3cmb_A Acetoacetate decarboxylase; YP_001047042.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE P33
PE8; 1.60A {Methanoculleus marisnigri JR1} SCOP:
d.347.1.1
Length = 283
Score = 32.8 bits (74), Expect = 0.24
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 249 TEEALHDIQGWMFFST--TFWMLFAHFGALASFPPEREVINKERLSGAYRLSAYYLAKMV 306
+ MF +++ HFG P LS ++ L +
Sbjct: 9 HHHHENLYFQGMFRPQDDFTYLMPVHFGGGKFDPETLVTQKATALSLSFETERDLLENYI 68
Query: 307 GELPLTITLPAV 318
E + P V
Sbjct: 69 PE-GFELLAPEV 79
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 32.2 bits (74), Expect = 0.35
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
+ + + R LSGG+++R + ++ P + L+DEP S LD
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.70
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 67 LMSSLKRYAEKEGKTVVV--TV 86
L +SLK YA+ + + T+
Sbjct: 25 LQASLKLYADDSAPALAIKATM 46
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 29.1 bits (64), Expect = 3.0
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 189 VSSSYDDMSWQWPTSFWTQ--FKVLSQR 214
+S SYD+ S + SFW +K +R
Sbjct: 1 MSGSYDEASEEITDSFWEVGNYKRTVKR 28
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1)
domain, transferase, lipid binding membrane
association; 1.70A {Homo sapiens} PDB: 1ul7_A
Length = 120
Score = 28.0 bits (62), Expect = 3.5
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 3 YVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACEL 43
+ I VLD NC + ++ + G ++ + + E+
Sbjct: 42 MMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEM 82
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 28.7 bits (65), Expect = 4.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLD 60
+ + R LSGG+++R I L+ P++ LLDEP S LD
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.50A {Geobacillus stearothermophilus}
Length = 202
Score = 28.3 bits (62), Expect = 5.1
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 388 TLATQLFGGYLATNIPYWLKWMQYLSMVHYAYQNMQIVEFSEG 430
TL + AT++P L + H+A N Q +
Sbjct: 26 TLVSMHQRELFATHLPLLLDREKTCLYGHFARSNPQWNDIQHQ 68
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation,
crystallography, phosphorylation, sigma factor,
sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP:
c.13.2.1 PDB: 1h4z_A 1h4y_A
Length = 117
Score = 27.3 bits (61), Expect = 5.5
Identities = 4/45 (8%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 67 LMSSLKRYAEKEGKTVVVTVHQPSSQIFHM--FDKLLLLCNGQTA 109
++ ++ G+T+++ ++F ++ + A
Sbjct: 63 VLGRMRELEAVAGRTILLNPSPTMRKVFQFSGLGPWMMDATEEEA 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.432
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,484,377
Number of extensions: 428236
Number of successful extensions: 1324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 79
Length of query: 494
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,993,456
Effective search space: 1585402032
Effective search space used: 1585402032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)