RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16346
(494 letters)
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 79.1 bits (195), Expect = 2e-17
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R IA L NP ++L D+PT LDS +M LK+ E++GKTVVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 89 PSSQIFHMFDKLLLLCNGQ 107
+ + ++++ L +G+
Sbjct: 206 IN--VARFGERIIYLKDGE 222
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 78.4 bits (193), Expect = 9e-17
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
++ A +T++G+ LSGG++ R ++A + + L LLD P LD
Sbjct: 135 CQLQQDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 193
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFG 112
+ S KT ++ + DK+L+L G + ++G
Sbjct: 194 EEQVFESCVCKLMA-NKTRILVTSKMEH--LRKADKILILHQGSSYFYG 239
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 76.8 bits (189), Expect = 2e-16
Identities = 29/109 (26%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+ + N TIIG+ LSGG+++R IA LL + +++LDE TS LD+ + ++ +
Sbjct: 135 INKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 193
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVV 118
+L ++ +T +V H+ S D+++++ +G G ++++
Sbjct: 194 ALDE--LQKNRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELL 238
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 74.6 bits (183), Expect = 1e-15
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+ L T + + + LSGG+++ +A L+ P +++LD+ TS LD+++ +
Sbjct: 134 ISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 192
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
L E+ ++V++ S + D +L L G G ++++
Sbjct: 193 LLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQLME 240
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 73.7 bits (181), Expect = 2e-15
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
I + + R LSGG+++R +A ++ P ++L+DEP S LD+ ++ + +K+ +K
Sbjct: 126 IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 185
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
T + H + M D++ ++ GQ G +V
Sbjct: 186 LKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 73.7 bits (181), Expect = 2e-15
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+++L T +G+ + LSGG+K+R +IA L NP +++LDE TS LD + +
Sbjct: 137 IMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 195
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+L + +T ++ H+ S+ DK++++ NG G +++
Sbjct: 196 ALDVL--SKDRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHRELIA 241
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 72.3 bits (177), Expect = 5e-15
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
I+ L L++ G+ LSGG+ K I L+TNP ++++DEP +G+
Sbjct: 131 AFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
A+ + + + +G T ++ H+ + + D L ++ NGQ G + +
Sbjct: 186 AHDIFNHVLELKA-KGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 69.1 bits (169), Expect = 8e-14
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGG+++R +IA L P ++L DEPTS LD ++ +++ AE EGKT+VV H+
Sbjct: 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHE 208
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
H+ ++ L G+ GD +V
Sbjct: 209 M-GFARHVSSHVIFLHQGKIEEEGDPEQVFG 238
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 67.6 bits (165), Expect = 2e-13
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 29 LSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQ 88
LSGGE++ I L++ P L+++DEP+ GL + +++ +EG T+++
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN-QEGTTILLVEQN 198
Query: 89 PSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ +L GQ G ++++D
Sbjct: 199 A-LGALKVAHYGYVLETGQIVLEGKASELLD 228
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 67.2 bits (164), Expect = 3e-13
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 17 QHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAE 76
+T +G+ + +SGG+++R IA L NP +++LDE T+ LDS + + +L
Sbjct: 129 LNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM- 186
Query: 77 KEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+G+T +V H+ S+ DK+ + GQ G N++V
Sbjct: 187 -KGRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNELVA 226
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 66.9 bits (163), Expect = 3e-13
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 10 VLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMS 69
+ +L +TI+G+ LSGG+++R IA L+ NP +++ DE TS LD + + +M
Sbjct: 122 ISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 70 SLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
++ + +G+TV++ H+ S D+++++ G+ G +++
Sbjct: 181 NMHKIC--KGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 66.4 bits (162), Expect = 6e-13
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+GD LSGG+K+R IA L +NP ++L DE TS LD S++ LK +
Sbjct: 130 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
G T+++ H+ + + D + ++ NG+ ++V
Sbjct: 190 LGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVFS 230
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 63.0 bits (153), Expect = 6e-12
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V + +L L + + R LSGG+++R + ++ P + L+DEP S LD+
Sbjct: 120 VREVAELLGLTE-----LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ + LK+ + G T + H + M D++ ++ G G ++V D
Sbjct: 175 RVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 61.9 bits (150), Expect = 8e-12
Identities = 14/84 (16%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
+ + +++ + + + LS G +R +A LL N + +LD+P +D +
Sbjct: 107 IMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVH 87
+ ++ S+ +++G ++ +
Sbjct: 161 KHKVLKSILEILKEKGIVIISSRE 184
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 62.3 bits (151), Expect = 1e-11
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 21 IGDYMKR---GLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEK 77
+G+ +K S G ++ IA L+ NP L +LDEPTSGLD A + LK+ +++
Sbjct: 123 LGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 78 EGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+V + + ++ + D++ L+ NG G ++ +
Sbjct: 183 GLTILVSSHNM--LEVEFLCDRIALIHNGTIVETGTVEELKE 222
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 61.1 bits (148), Expect = 3e-11
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 29 LSGGEKKRANIACELL-------TNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKT 81
LSGGE +R +A +L L+LLDEP + LD +L L ++G
Sbjct: 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC-QQGLA 184
Query: 82 VVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+V++ H + + LL G+ G +V+
Sbjct: 185 IVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVLT 221
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 56.9 bits (137), Expect = 8e-10
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 4 VDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHA 63
V+ + VL LA+ + D + LSGG+++R I L+ P++ LLDEP S LD+
Sbjct: 111 VNQVAEVLQLAH-----LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 64 AYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ + R ++ G+T++ H + + DK+++L G+ A G ++
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 48.5 bits (115), Expect = 4e-07
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 5 DHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAA 64
+ V + + H + ++ R LSG +++R +A L+ +P+L+LLDEP S LD+
Sbjct: 119 KRVEEVAKILDIHH--VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 65 YSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
S + +K + G T++V H P + IF + D++ +L G+ G + D
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 48.2 bits (113), Expect = 9e-07
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 39 IACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFD 98
++ L +L++LDEPT LD L++ ++RY K+ V++ H ++ D
Sbjct: 218 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL-KKIPQVILVSHDE--ELKDAAD 274
Query: 99 KLLLL 103
++ +
Sbjct: 275 HVIRI 279
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 47.9 bits (112), Expect = 1e-06
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 31 GGEKKRANIACEL------LTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTVVV 84
GGE+ +A L +L++LDEPT LD L++ ++RY +K V++
Sbjct: 281 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVIL 339
Query: 85 TVHQPSSQIFHMFDKLLLL 103
H ++ D ++ +
Sbjct: 340 VSHDE--ELKDAADHVIRI 356
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 44.7 bits (105), Expect = 9e-06
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 23 DYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLKRYAEKEGKTV 82
D LSGGE++R +A L+TNP ++LLDEP S LD + L +K TV
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 83 VVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ H ++ M D++ ++ +G+ G ++ +
Sbjct: 182 LHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 42.7 bits (100), Expect = 4e-05
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 13 LANCQHTIIGDYMKRGLSGGEKKRANIACELLTNPALMLLDEPTSGLDSHAAYSLMSSLK 72
+ D LSGGE++R +A L+ P L+LLDEP S +D LM L+
Sbjct: 111 AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Query: 73 RYAEKEGKTVVVTVHQPSSQIFHMFDKLLLLCNGQTAYFGDTNKVVD 119
+ ++ H + + D++ ++ NG+ G ++
Sbjct: 171 FVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 39.3 bits (90), Expect = 8e-04
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 1 MTYVDHIINVLDLANCQHTIIGDYMKRGLSGGEKKRANIA---CELLTNPA-LMLLDEPT 56
+ D N + + LSGGEK A +A P+ +LDE
Sbjct: 305 IEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVD 364
Query: 57 SGLDSHAAYSLMSSLKRYAEKEGKTVVVTVHQPSSQIFHMFDKLL 101
+ LD + + ++R+ + + +V++ + +F D L+
Sbjct: 365 AALDITNVQRIAAYIRRHRNPDLQFIVIS-LKN--TMFEKSDALV 406
>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase
{Methanoculleus marisnigri [TaxId: 2198]}
Length = 264
Score = 27.6 bits (61), Expect = 3.0
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 267 WMLFAHFGALASFPPEREVI-NKERLSGAYRLSAYYLAKMVGELPLTITLPAV-YHLISY 324
+++ HFG F PE V LS ++ L + E + P V +
Sbjct: 10 YLMPVHFGG-GKFDPETLVTQKATALSLSFETERDLLENYIPE-GFELLAPEVQVAFNKF 67
Query: 325 P 325
Sbjct: 68 T 68
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 26.1 bits (57), Expect = 3.3
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 153 AIPKNCNHNTFPMPTLSEEEECKQLCLDSQSHASSSVSSSYDDMSWQWPTSFWTQ 207
I T + T ++C C ++ + + +D Q +
Sbjct: 17 KIDPALKIKTKKVNTA---DQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNS 68
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 25.0 bits (54), Expect = 6.5
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 128 WNKSKAAKKCERRSSWLPKR---RGFTQAIPKNCNHNTFPMPTLSEEEECK 175
W + +C ++ ++ R Q C P+P E+E +
Sbjct: 10 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVR 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.136 0.432
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,864,139
Number of extensions: 84260
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 30
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (26.0 bits)