Query psy16347
Match_columns 288
No_of_seqs 353 out of 1807
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:02:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1717|consensus 100.0 2E-31 4.2E-36 232.7 12.4 137 22-158 181-317 (343)
2 KOG1718|consensus 100.0 7.1E-30 1.5E-34 209.4 13.3 135 21-157 25-159 (198)
3 smart00195 DSPc Dual specifici 100.0 5.4E-28 1.2E-32 197.4 15.5 130 21-152 9-138 (138)
4 PF00782 DSPc: Dual specificit 100.0 2.6E-28 5.7E-33 197.7 11.7 130 22-152 3-133 (133)
5 KOG1716|consensus 100.0 1.3E-27 2.8E-32 218.1 15.3 139 21-159 83-222 (285)
6 cd00127 DSPc Dual specificity 99.9 5.4E-26 1.2E-30 185.1 15.0 129 22-150 11-139 (139)
7 PTZ00242 protein tyrosine phos 99.9 2.8E-23 6.1E-28 175.2 13.6 147 5-156 9-161 (166)
8 PRK12361 hypothetical protein; 99.9 2.8E-22 6.1E-27 198.3 16.6 131 21-152 103-236 (547)
9 KOG1719|consensus 99.9 4.6E-22 1E-26 161.3 12.5 147 6-157 22-174 (183)
10 PTZ00393 protein tyrosine phos 99.9 8.3E-22 1.8E-26 172.7 14.2 124 28-155 106-231 (241)
11 KOG1720|consensus 99.9 1.1E-20 2.4E-25 160.7 15.7 147 2-151 48-206 (225)
12 COG2453 CDC14 Predicted protei 99.7 2.1E-15 4.5E-20 129.0 13.5 77 58-135 72-149 (180)
13 KOG1717|consensus 99.6 1E-16 2.2E-21 140.7 3.2 74 215-288 168-244 (343)
14 KOG2836|consensus 99.6 6.7E-15 1.4E-19 117.1 10.3 118 29-150 32-153 (173)
15 PF05706 CDKN3: Cyclin-depende 99.5 3.7E-14 8E-19 118.0 9.2 97 28-126 61-168 (168)
16 KOG1718|consensus 99.3 1.2E-12 2.6E-17 108.1 4.0 68 219-288 17-87 (198)
17 TIGR01244 conserved hypothetic 99.2 1.8E-10 4E-15 93.9 11.8 109 22-137 11-129 (135)
18 smart00404 PTPc_motif Protein 99.2 1.9E-10 4.1E-15 88.1 11.1 87 60-146 4-99 (105)
19 smart00012 PTPc_DSPc Protein t 99.2 1.9E-10 4.1E-15 88.1 11.1 87 60-146 4-99 (105)
20 PF03162 Y_phosphatase2: Tyros 99.2 3.9E-11 8.3E-16 101.1 7.2 125 27-155 21-152 (164)
21 KOG1716|consensus 99.1 5.6E-11 1.2E-15 108.7 4.5 74 215-288 71-148 (285)
22 smart00195 DSPc Dual specifici 99.0 4.9E-10 1.1E-14 91.1 4.7 68 219-288 1-71 (138)
23 cd00047 PTPc Protein tyrosine 98.9 6.1E-09 1.3E-13 92.0 10.2 82 66-147 138-226 (231)
24 PF13350 Y_phosphatase3: Tyros 98.9 3.6E-09 7.8E-14 88.9 6.8 100 27-128 31-159 (164)
25 smart00194 PTPc Protein tyrosi 98.9 1.1E-08 2.4E-13 91.9 10.3 83 65-147 165-253 (258)
26 PLN02727 NAD kinase 98.9 7E-09 1.5E-13 105.6 9.4 103 20-125 263-374 (986)
27 PRK15375 pathogenicity island 98.9 1.8E-08 4E-13 96.9 11.4 90 65-154 430-530 (535)
28 KOG2283|consensus 98.8 2.1E-08 4.5E-13 96.2 8.6 143 11-155 18-176 (434)
29 COG5350 Predicted protein tyro 98.7 1.7E-07 3.7E-12 76.6 11.1 109 31-143 25-145 (172)
30 PF04273 DUF442: Putative phos 98.7 2.8E-08 6E-13 78.2 6.1 81 25-111 14-104 (110)
31 PF00102 Y_phosphatase: Protei 98.5 1.3E-06 2.8E-11 76.4 10.3 83 65-147 142-230 (235)
32 cd00127 DSPc Dual specificity 98.4 1.9E-07 4.1E-12 75.5 4.3 70 219-288 2-74 (139)
33 PHA02742 protein tyrosine phos 98.4 2E-06 4.3E-11 79.4 10.9 82 65-146 190-288 (303)
34 PHA02747 protein tyrosine phos 98.4 2.3E-06 4.9E-11 79.4 10.2 82 65-146 191-288 (312)
35 PHA02740 protein tyrosine phos 98.4 3.4E-06 7.3E-11 77.7 11.2 82 65-146 185-280 (298)
36 PF14566 PTPlike_phytase: Inos 98.4 1.1E-06 2.3E-11 73.0 6.8 57 58-116 92-148 (149)
37 PF00782 DSPc: Dual specificit 98.3 2.3E-07 5.1E-12 74.6 2.1 62 226-288 1-66 (133)
38 PHA02746 protein tyrosine phos 98.3 6.3E-06 1.4E-10 76.8 11.9 55 93-147 248-307 (323)
39 PHA02738 hypothetical protein; 98.2 8.9E-06 1.9E-10 75.7 10.2 82 65-146 186-286 (320)
40 COG3453 Uncharacterized protei 98.2 2.3E-05 4.9E-10 61.8 10.5 100 24-132 14-125 (130)
41 KOG0792|consensus 98.1 8.4E-06 1.8E-10 83.9 9.0 89 59-147 1028-1123(1144)
42 PRK12361 hypothetical protein; 98.0 3.3E-06 7.1E-11 84.1 4.0 67 219-288 95-168 (547)
43 COG5599 PTP2 Protein tyrosine 98.0 1.5E-05 3.1E-10 71.0 5.8 92 59-154 185-294 (302)
44 PF04179 Init_tRNA_PT: Initiat 97.9 0.0002 4.3E-09 69.4 13.3 114 36-149 316-449 (451)
45 KOG2386|consensus 97.9 2.8E-05 6.2E-10 73.3 6.8 121 30-151 53-183 (393)
46 KOG1572|consensus 97.9 0.00015 3.2E-09 63.7 10.4 103 27-132 74-187 (249)
47 KOG0790|consensus 97.7 9.6E-05 2.1E-09 70.1 7.7 116 30-146 372-513 (600)
48 COG2365 Protein tyrosine/serin 97.7 0.00013 2.9E-09 65.5 7.8 61 79-139 122-183 (249)
49 KOG0791|consensus 97.4 0.00069 1.5E-08 63.0 9.0 91 59-149 253-349 (374)
50 KOG0789|consensus 97.4 0.0009 2E-08 63.9 10.0 85 60-147 266-360 (415)
51 KOG0793|consensus 96.1 0.02 4.3E-07 57.4 7.7 91 61-151 895-993 (1004)
52 PF14671 DSPn: Dual specificit 95.8 0.026 5.6E-07 46.3 6.1 67 67-134 39-112 (141)
53 KOG4228|consensus 95.3 0.038 8.2E-07 58.2 6.4 77 65-144 702-787 (1087)
54 KOG4471|consensus 94.1 0.1 2.2E-06 51.7 5.8 39 78-116 360-399 (717)
55 KOG4228|consensus 93.2 0.18 4E-06 53.2 6.2 55 92-146 1018-1077(1087)
56 COG0607 PspE Rhodanese-related 90.6 0.81 1.8E-05 34.6 5.9 71 32-117 13-84 (110)
57 cd01518 RHOD_YceA Member of th 88.7 1.7 3.7E-05 32.7 6.3 29 90-121 59-87 (101)
58 KOG1089|consensus 88.2 1.1 2.4E-05 44.6 6.0 34 83-116 334-369 (573)
59 PLN02160 thiosulfate sulfurtra 87.4 1.6 3.5E-05 35.3 5.7 83 30-121 21-107 (136)
60 PF06602 Myotub-related: Myotu 87.3 1.6 3.4E-05 41.3 6.3 22 90-111 229-250 (353)
61 cd01520 RHOD_YbbB Member of th 84.0 3.5 7.6E-05 32.6 6.1 31 88-120 82-112 (128)
62 PRK01415 hypothetical protein; 80.3 6.6 0.00014 35.3 7.0 28 90-120 169-196 (247)
63 cd01448 TST_Repeat_1 Thiosulfa 75.8 8.1 0.00018 29.9 5.6 31 89-121 76-106 (122)
64 PF00581 Rhodanese: Rhodanese- 73.6 19 0.00042 26.7 7.1 83 36-121 10-98 (113)
65 cd01522 RHOD_1 Member of the R 71.8 27 0.00058 27.0 7.7 74 39-120 15-89 (117)
66 PRK00142 putative rhodanese-re 71.7 13 0.00029 34.5 6.8 28 91-121 170-197 (314)
67 PF04273 DUF442: Putative phos 66.6 2.8 6.1E-05 32.8 1.0 51 221-271 4-67 (110)
68 cd01523 RHOD_Lact_B Member of 63.1 30 0.00066 25.6 6.2 29 90-121 59-87 (100)
69 TIGR01244 conserved hypothetic 62.9 5.5 0.00012 32.1 2.1 53 220-272 3-68 (135)
70 cd01533 4RHOD_Repeat_2 Member 61.5 23 0.00049 26.8 5.3 27 91-120 65-91 (109)
71 PRK05320 rhodanese superfamily 60.7 19 0.00042 32.4 5.4 27 91-120 174-200 (257)
72 cd01443 Cdc25_Acr2p Cdc25 enzy 59.9 33 0.00073 26.1 6.0 19 91-109 65-83 (113)
73 PTZ00242 protein tyrosine phos 59.5 7.8 0.00017 32.5 2.5 33 241-273 40-73 (166)
74 PRK11784 tRNA 2-selenouridine 58.2 32 0.00069 32.5 6.6 28 91-120 87-114 (345)
75 PF03861 ANTAR: ANTAR domain; 58.0 17 0.00038 24.4 3.6 26 107-132 15-40 (56)
76 PF03668 ATP_bind_2: P-loop AT 57.6 12 0.00026 34.3 3.5 22 89-110 236-260 (284)
77 cd01528 RHOD_2 Member of the R 56.6 32 0.00069 25.5 5.3 28 91-121 57-84 (101)
78 TIGR03865 PQQ_CXXCW PQQ-depend 56.3 25 0.00055 29.2 5.1 30 90-121 114-143 (162)
79 PRK10302 hypothetical protein; 54.8 86 0.0019 28.6 8.6 69 32-102 148-238 (272)
80 COG1660 Predicted P-loop-conta 54.8 21 0.00047 32.4 4.6 22 89-110 237-261 (286)
81 PRK05569 flavodoxin; Provision 53.1 1.1E+02 0.0024 24.1 8.3 115 32-154 24-140 (141)
82 TIGR03167 tRNA_sel_U_synt tRNA 52.6 44 0.00095 31.0 6.5 29 90-120 72-100 (311)
83 cd01519 RHOD_HSP67B2 Member of 51.4 25 0.00053 26.2 3.9 28 90-120 64-91 (106)
84 PF01904 DUF72: Protein of unk 50.0 1.8E+02 0.0039 25.5 10.1 71 30-101 134-213 (230)
85 PF04364 DNA_pol3_chi: DNA pol 47.9 36 0.00079 27.4 4.6 24 78-101 15-38 (137)
86 cd01534 4RHOD_Repeat_3 Member 47.8 29 0.00063 25.5 3.8 28 91-121 55-82 (95)
87 PRK05416 glmZ(sRNA)-inactivati 47.5 20 0.00044 32.9 3.4 36 76-111 222-264 (288)
88 PRK05728 DNA polymerase III su 44.1 37 0.0008 27.6 4.1 25 77-101 14-38 (142)
89 COG2927 HolC DNA polymerase II 43.9 28 0.00061 28.6 3.3 23 79-101 16-38 (144)
90 PRK07411 hypothetical protein; 43.4 38 0.00083 32.4 4.7 28 91-121 341-368 (390)
91 cd01444 GlpE_ST GlpE sulfurtra 42.6 64 0.0014 23.3 5.0 29 89-120 53-81 (96)
92 PRK10886 DnaA initiator-associ 42.2 72 0.0016 27.5 5.8 34 75-111 24-57 (196)
93 PF04343 DUF488: Protein of un 41.6 99 0.0021 24.1 6.1 35 31-66 6-52 (122)
94 smart00400 ZnF_CHCC zinc finge 41.4 31 0.00066 23.1 2.7 32 96-129 23-54 (55)
95 TIGR00853 pts-lac PTS system, 40.0 27 0.00059 26.3 2.5 18 92-110 3-20 (95)
96 COG0279 GmhA Phosphoheptose is 39.6 54 0.0012 27.8 4.4 31 74-107 23-53 (176)
97 PRK06646 DNA polymerase III su 38.7 49 0.0011 27.4 4.1 25 77-101 14-38 (154)
98 cd01532 4RHOD_Repeat_1 Member 38.7 51 0.0011 24.1 3.9 29 91-120 49-77 (92)
99 COG3357 Predicted transcriptio 38.6 1E+02 0.0022 23.3 5.2 53 119-190 18-70 (97)
100 cd01447 Polysulfide_ST Polysul 36.8 39 0.00084 24.8 3.0 29 89-120 58-86 (103)
101 cd05567 PTS_IIB_mannitol PTS_I 36.5 39 0.00085 24.7 2.9 14 93-106 1-14 (87)
102 PF02571 CbiJ: Precorrin-6x re 35.9 27 0.00058 31.4 2.2 74 22-98 49-136 (249)
103 cd07322 PriL_PriS_Eukaryotic E 35.8 74 0.0016 30.6 5.3 109 75-191 221-330 (390)
104 PRK13938 phosphoheptose isomer 35.5 1.1E+02 0.0023 26.4 5.8 38 73-113 26-63 (196)
105 cd03174 DRE_TIM_metallolyase D 35.0 3.1E+02 0.0067 23.9 10.0 99 31-133 121-246 (265)
106 KOG1530|consensus 34.2 74 0.0016 25.8 4.2 71 31-107 30-103 (136)
107 cd01525 RHOD_Kc Member of the 33.3 65 0.0014 23.8 3.8 26 92-120 65-90 (105)
108 PRK00414 gmhA phosphoheptose i 33.3 1.1E+02 0.0024 26.1 5.6 33 75-110 27-59 (192)
109 cd01529 4RHOD_Repeats Member o 33.1 59 0.0013 23.8 3.4 28 90-120 54-81 (96)
110 cd01530 Cdc25 Cdc25 phosphatas 32.0 57 0.0012 25.5 3.3 26 89-116 65-91 (121)
111 COG4359 Uncharacterized conser 31.5 2E+02 0.0044 25.0 6.6 68 84-156 151-218 (220)
112 TIGR03642 cas_csx13 CRISPR-ass 31.5 1.8E+02 0.0039 23.3 6.0 61 59-119 54-116 (124)
113 PF03162 Y_phosphatase2: Tyros 31.3 13 0.00029 31.1 -0.5 54 221-274 9-69 (164)
114 PF13720 Acetyltransf_11: Udp 30.9 2.1E+02 0.0045 21.0 5.9 35 101-135 26-63 (83)
115 COG3707 AmiR Response regulato 30.3 52 0.0011 28.4 2.9 23 110-132 150-172 (194)
116 PRK11449 putative deoxyribonuc 29.8 1.1E+02 0.0024 27.4 5.2 55 77-131 112-172 (258)
117 TIGR02981 phageshock_pspE phag 29.8 1.5E+02 0.0031 22.5 5.2 27 91-120 57-83 (101)
118 COG0276 HemH Protoheme ferro-l 29.3 35 0.00075 31.9 1.9 58 28-89 246-318 (320)
119 PF01807 zf-CHC2: CHC2 zinc fi 29.3 59 0.0013 24.5 2.9 35 96-132 54-88 (97)
120 cd01526 RHOD_ThiF Member of th 28.9 72 0.0016 24.6 3.4 28 90-120 70-97 (122)
121 PRK05772 translation initiatio 28.7 1E+02 0.0022 29.3 4.9 14 89-102 164-177 (363)
122 PHA02540 61 DNA primase; Provi 28.7 1.8E+02 0.0039 27.4 6.5 37 94-133 53-90 (337)
123 PF10302 DUF2407: DUF2407 ubiq 28.7 33 0.00072 26.1 1.4 10 93-102 86-95 (97)
124 PF02302 PTS_IIB: PTS system, 28.7 50 0.0011 23.9 2.3 13 94-106 1-13 (90)
125 PRK10287 thiosulfate:cyanide s 28.0 1.2E+02 0.0025 23.2 4.3 27 91-120 59-85 (104)
126 PRK06036 translation initiatio 27.9 1.1E+02 0.0024 28.8 5.0 18 89-106 145-162 (339)
127 KOG0235|consensus 27.9 1.8E+02 0.0039 25.6 5.9 51 72-128 132-186 (214)
128 PLN02449 ferrochelatase 27.4 49 0.0011 32.8 2.6 60 28-91 341-415 (485)
129 COG1054 Predicted sulfurtransf 27.2 2.6E+02 0.0057 25.9 7.1 44 70-116 149-194 (308)
130 cd01527 RHOD_YgaP Member of th 26.2 79 0.0017 23.1 3.1 17 90-107 52-68 (99)
131 PF13580 SIS_2: SIS domain; PD 25.9 1.4E+02 0.003 23.8 4.7 31 76-109 19-49 (138)
132 TIGR00512 salvage_mtnA S-methy 25.1 1.4E+02 0.0031 28.0 5.2 14 89-102 140-157 (331)
133 PRK10499 PTS system N,N'-diace 25.0 93 0.002 23.9 3.3 15 92-106 3-17 (106)
134 PRK00162 glpE thiosulfate sulf 25.0 1.8E+02 0.0039 21.6 5.0 30 89-121 55-84 (108)
135 PF03102 NeuB: NeuB family; I 24.5 52 0.0011 29.4 2.1 70 33-104 64-153 (241)
136 PF06838 Met_gamma_lyase: Meth 24.4 1.3E+02 0.0028 28.9 4.6 64 58-136 128-191 (403)
137 PF02673 BacA: Bacitracin resi 24.2 78 0.0017 28.6 3.2 27 100-128 159-185 (259)
138 PRK09590 celB cellobiose phosp 24.0 72 0.0016 24.6 2.5 14 93-106 2-15 (104)
139 PF14566 PTPlike_phytase: Inos 23.8 52 0.0011 26.8 1.8 27 260-287 91-117 (149)
140 PRK11070 ssDNA exonuclease Rec 23.8 1E+02 0.0022 31.2 4.2 37 68-104 45-84 (575)
141 PHA03338 US22 family homolog; 23.7 74 0.0016 29.3 2.8 39 97-135 161-200 (344)
142 cd05006 SIS_GmhA Phosphoheptos 23.2 2.4E+02 0.0053 23.2 5.9 31 76-109 17-47 (177)
143 smart00450 RHOD Rhodanese Homo 23.1 1.4E+02 0.0031 20.9 4.0 30 89-121 53-82 (100)
144 cd04765 HTH_MlrA-like_sg2 Heli 23.1 3.3E+02 0.0072 20.5 6.3 43 115-157 54-96 (99)
145 PF13147 Amidohydro_4: Amidohy 22.9 3.2E+02 0.0069 23.4 6.8 54 78-131 222-280 (304)
146 PRK11493 sseA 3-mercaptopyruva 22.8 68 0.0015 29.0 2.5 29 89-120 228-256 (281)
147 cd01531 Acr2p Eukaryotic arsen 22.4 1.7E+02 0.0036 22.1 4.4 21 90-110 60-80 (113)
148 PF03786 UxuA: D-mannonate deh 22.2 4E+02 0.0087 25.3 7.5 80 6-98 4-104 (351)
149 PF06415 iPGM_N: BPG-independe 22.2 1.1E+02 0.0023 27.2 3.5 48 66-116 36-85 (223)
150 cd00158 RHOD Rhodanese Homolog 22.1 1.2E+02 0.0026 21.1 3.3 28 89-119 47-74 (89)
151 PF00762 Ferrochelatase: Ferro 21.9 64 0.0014 29.9 2.2 43 28-70 244-301 (316)
152 cd01521 RHOD_PspE2 Member of t 21.7 1.2E+02 0.0025 22.9 3.3 30 89-120 61-91 (110)
153 TIGR02094 more_P_ylases alpha- 21.0 91 0.002 31.8 3.2 36 93-131 161-199 (601)
154 TIGR00644 recJ single-stranded 20.7 1.9E+02 0.0041 29.0 5.3 53 67-121 29-84 (539)
155 PRK02947 hypothetical protein; 20.4 2.1E+02 0.0045 25.4 5.1 39 75-117 23-61 (246)
No 1
>KOG1717|consensus
Probab=99.97 E-value=2e-31 Score=232.67 Aligned_cols=137 Identities=55% Similarity=0.847 Sum_probs=133.6
Q ss_pred cccCCCCCChHHHHhCCCcEEEEcCCCCCcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCC
Q psy16347 22 IAKINRGGPISTLGTHYRDYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLA 101 (288)
Q Consensus 22 ig~~~~~~~~~~L~~~gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~ 101 (288)
+|.-.++.+.+.|+++||++|||+++.+|+.|+..+.+.|.+||++|+..+++.++|++|+.||++++.+...|||||-+
T Consensus 181 Lg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHCla 260 (343)
T KOG1717|consen 181 LGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLA 260 (343)
T ss_pred cccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeec
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy16347 102 GVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEARL 158 (288)
Q Consensus 102 G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~~~~ 158 (288)
|+|||+|+++||||.+..+++++|+++|+.++..+.||.+||.||..||+.|...++
T Consensus 261 GISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s~ 317 (343)
T KOG1717|consen 261 GISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLESR 317 (343)
T ss_pred cccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccCc
Confidence 999999999999999999999999999999999999999999999999999988764
No 2
>KOG1718|consensus
Probab=99.97 E-value=7.1e-30 Score=209.39 Aligned_cols=135 Identities=30% Similarity=0.452 Sum_probs=126.5
Q ss_pred CcccCCCCCChHHHHhCCCcEEEEcCCCCCcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcC
Q psy16347 21 PIAKINRGGPISTLGTHYRDYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCL 100 (288)
Q Consensus 21 pig~~~~~~~~~~L~~~gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~ 100 (288)
-+++.-.+.+...|+++||++|||.+.|.|+... +++.|+.+|+.|.+...+.++|+.+.+.|+....+||++||||.
T Consensus 25 fl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l--~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~ 102 (198)
T KOG1718|consen 25 FLSNGVAANDKLLLKKRKITCIINATTEVPNTSL--PDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCV 102 (198)
T ss_pred eEeccccccCHHHHHhcCceEEEEcccCCCCccC--CCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEc
Confidence 4556668889999999999999999999998543 34899999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy16347 101 AGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEAR 157 (288)
Q Consensus 101 ~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~~~ 157 (288)
||+|||+++++||||+..++++.||+.++|.+||.+.||-+|++||..||++|+...
T Consensus 103 AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 103 AGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred cccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999998765
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=5.4e-28 Score=197.37 Aligned_cols=130 Identities=39% Similarity=0.680 Sum_probs=118.3
Q ss_pred CcccCCCCCChHHHHhCCCcEEEEcCCCCCcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcC
Q psy16347 21 PIAKINRGGPISTLGTHYRDYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCL 100 (288)
Q Consensus 21 pig~~~~~~~~~~L~~~gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~ 100 (288)
.+|+...+.+.+.|+++||++||||+.+.+.. . ..+++|+++|+.|...+++.+.+.++++||+..+++|++|||||.
T Consensus 9 ~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~-~-~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 86 (138)
T smart00195 9 YLGSYSSALNLALLKKLGITHVINVTNEVPNL-N-KKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQ 86 (138)
T ss_pred EECChhHcCCHHHHHHcCCCEEEEccCCCCCC-C-CCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 45666688899999999999999999875543 2 345999999999987788888999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy16347 101 AGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKE 152 (288)
Q Consensus 101 ~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~ 152 (288)
+|++||+++++||||...|+++++|+++++++||.+.||++|+.||..||++
T Consensus 87 ~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 87 AGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred CCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999873
No 4
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=2.6e-28 Score=197.75 Aligned_cols=130 Identities=37% Similarity=0.567 Sum_probs=118.6
Q ss_pred cccCCCCCChHHHHhCCCcEEEEcCCCCCc-ccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcC
Q psy16347 22 IAKINRGGPISTLGTHYRDYVLNVTADLPN-VFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCL 100 (288)
Q Consensus 22 ig~~~~~~~~~~L~~~gI~~Vlnl~~~~~~-~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~ 100 (288)
+|+...+. .+.|+++||++|||++.+.+. ......++.|+++|+.|....++.+.++.+++||+++.++|++|||||.
T Consensus 3 lG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 81 (133)
T PF00782_consen 3 LGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCK 81 (133)
T ss_dssp EEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeC
Confidence 46666777 999999999999999987655 3334446999999999988888888999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy16347 101 AGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKE 152 (288)
Q Consensus 101 ~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~ 152 (288)
+|+|||+++++||||...++++++|+++++++||.+.|++.|+.||..||++
T Consensus 82 ~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 82 AGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp SSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999974
No 5
>KOG1716|consensus
Probab=99.95 E-value=1.3e-27 Score=218.14 Aligned_cols=139 Identities=42% Similarity=0.622 Sum_probs=129.3
Q ss_pred CcccCCCCCChHHHHhCCCcEEEEcCCCCCcc-cccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEc
Q psy16347 21 PIAKINRGGPISTLGTHYRDYVLNVTADLPNV-FEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHC 99 (288)
Q Consensus 21 pig~~~~~~~~~~L~~~gI~~Vlnl~~~~~~~-~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC 99 (288)
.+|+...+.+.+.|+++||++|+|+....+.. +...++++|+++|+.|.+.+++.++|+++++||+.+..+|++|||||
T Consensus 83 ~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC 162 (285)
T KOG1716|consen 83 YLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHC 162 (285)
T ss_pred eecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 46677799999999999999999999988875 34443599999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy16347 100 LAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEARLQ 159 (288)
Q Consensus 100 ~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~~~~~ 159 (288)
.+|+|||+++++||||+.+++++++|+++|+.+||.+.||.+|+.||..||+.+......
T Consensus 163 ~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~ 222 (285)
T KOG1716|consen 163 QAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPS 222 (285)
T ss_pred CCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCcc
Confidence 999999999999999999999999999999999999999999999999999999886543
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.94 E-value=5.4e-26 Score=185.11 Aligned_cols=129 Identities=40% Similarity=0.645 Sum_probs=116.4
Q ss_pred cccCCCCCChHHHHhCCCcEEEEcCCCCCcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCC
Q psy16347 22 IAKINRGGPISTLGTHYRDYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLA 101 (288)
Q Consensus 22 ig~~~~~~~~~~L~~~gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~ 101 (288)
+|+...+.+.+.|++.||++||||+.+.+.......+++|+++|+.|...+++...++.+++||+...+++++|||||.+
T Consensus 11 ~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~ 90 (139)
T cd00127 11 LGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLA 90 (139)
T ss_pred ECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCC
Confidence 45555888999999999999999998655422233459999999999988888888999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy16347 102 GVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFE 150 (288)
Q Consensus 102 G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e 150 (288)
|.|||+++++||||...++++++|+++++++||.+.||++|+.||..||
T Consensus 91 G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 91 GVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999986
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.90 E-value=2.8e-23 Score=175.21 Aligned_cols=147 Identities=17% Similarity=0.201 Sum_probs=120.2
Q ss_pred ceeeeeeCCccccccCCcccCCCCCChHHHHhCCCcEEEEcCCCCC--cccccCCCeEEEEEeeCCCCCCCHHhHHHHHH
Q psy16347 5 ATGRWLDTPTISSLSTPIAKINRGGPISTLGTHYRDYVLNVTADLP--NVFEATGSIKYMQIPIADHWSQNLATYFPQAI 82 (288)
Q Consensus 5 ~~~~Wi~~~~l~~~~~pig~~~~~~~~~~L~~~gI~~Vlnl~~~~~--~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~ 82 (288)
....|+ ..++..+..|.++.. ..+++.|+++||++||+++.+.. ..+...| +.++++|+.|...+... .+.+++
T Consensus 9 ~~~~~~-~~r~~~~~~P~~~~~-~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~g-i~~~~~p~~D~~~P~~~-~i~~~~ 84 (166)
T PTZ00242 9 RQIEYV-LFKFLILDAPSPSNL-PLYIKELQRYNVTHLVRVCGPTYDAELLEKNG-IEVHDWPFDDGAPPPKA-VIDNWL 84 (166)
T ss_pred cceeee-ceEEEEecCCCcccH-HHHHHHHHhCCCeEEEecCCCCCCHHHHHHCC-CEEEecCCCCCCCCCHH-HHHHHH
Confidence 345677 667788888865432 25679999999999999986532 2344444 99999999998766555 478888
Q ss_pred HHHHHHHhC----CCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHh
Q psy16347 83 QFIEEARSQ----DTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEA 156 (288)
Q Consensus 83 ~fI~~~~~~----~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~~ 156 (288)
+++++.+.. |++|+|||.+|+|||++++++|||...+++++||+++++++||.+. ++.|+.+|..|++.+++.
T Consensus 85 ~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 85 RLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhccC
Confidence 888887755 9999999999999999999999999988999999999999999875 789999999999866543
No 8
>PRK12361 hypothetical protein; Provisional
Probab=99.89 E-value=2.8e-22 Score=198.31 Aligned_cols=131 Identities=24% Similarity=0.364 Sum_probs=114.6
Q ss_pred CcccCCCCCChHHHHhCCCcEEEEcCCCCCcc--cccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEE
Q psy16347 21 PIAKINRGGPISTLGTHYRDYVLNVTADLPNV--FEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVH 98 (288)
Q Consensus 21 pig~~~~~~~~~~L~~~gI~~Vlnl~~~~~~~--~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvH 98 (288)
.+|+...+.|.+.|+++||++||||+.+.+.. .....+++|+++|+.|...+.. ++++++++||++.+++|++||||
T Consensus 103 ~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~~~~~~~VlVH 181 (547)
T PRK12361 103 YLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQVRANKSVVVH 181 (547)
T ss_pred EECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHHHHCCCeEEEE
Confidence 46667789999999999999999999765431 1122349999999999887765 56999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHh-CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy16347 99 CLAGVSRSVTITVAYLMSA-LRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKE 152 (288)
Q Consensus 99 C~~G~~RS~~l~~aylm~~-~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~ 152 (288)
|.+|+|||+++++||||.+ .+++++||+++++++||.+.||+.|+++|+.|.+.
T Consensus 182 C~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~ 236 (547)
T PRK12361 182 CALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQ 236 (547)
T ss_pred CCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHc
Confidence 9999999999999999977 58999999999999999999999999888887654
No 9
>KOG1719|consensus
Probab=99.88 E-value=4.6e-22 Score=161.30 Aligned_cols=147 Identities=23% Similarity=0.358 Sum_probs=125.6
Q ss_pred eeeeeeCCccccc-cCCcccCCCCCChHHHHhCCCcEEEEcCCCC-----CcccccCCCeEEEEEeeCCCCCCCHHhHHH
Q psy16347 6 TGRWLDTPTISSL-STPIAKINRGGPISTLGTHYRDYVLNVTADL-----PNVFEATGSIKYMQIPIADHWSQNLATYFP 79 (288)
Q Consensus 6 ~~~Wi~~~~l~~~-~~pig~~~~~~~~~~L~~~gI~~Vlnl~~~~-----~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~ 79 (288)
..+|+..+..-.. .+|. .+.+.+.+++.|+..|+.++++. .+.|...| ++++.+|..|....+..+.+.
T Consensus 22 ~~~wy~~~~~v~~~~~~F----rS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~g-iE~L~i~T~D~~~~Ps~~~i~ 96 (183)
T KOG1719|consen 22 AFRWYRIDEFVILGAMPF----RSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYG-IEFLVIPTRDYTGAPSLENIQ 96 (183)
T ss_pred hhceeeecceEEEeeccc----ccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhcc-ceeEEeccccccCCCCHHHHH
Confidence 3577765554433 2455 34788999999999999998752 23566666 999999999987766666799
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy16347 80 QAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEAR 157 (288)
Q Consensus 80 ~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~~~ 157 (288)
++++||++....|+.|+|||.||.+||+++++||||...+|+.++|+++++++||.+-..+++++.|.+|-+.+....
T Consensus 97 ~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 97 KAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVANA 174 (183)
T ss_pred HHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776544
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.88 E-value=8.3e-22 Score=172.68 Aligned_cols=124 Identities=15% Similarity=0.248 Sum_probs=108.7
Q ss_pred CCChHHHHhCCCcEEEEcCCCCC--cccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCch
Q psy16347 28 GGPISTLGTHYRDYVLNVTADLP--NVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSR 105 (288)
Q Consensus 28 ~~~~~~L~~~gI~~Vlnl~~~~~--~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~R 105 (288)
...++.|+++||++||++++... ..+...| |.++++|+.|...|+.. .+.+++++++..+..|++|+|||.+|+||
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~G-I~~~~lpipDg~aPs~~-~i~~~l~~i~~~l~~g~~VaVHC~AGlGR 183 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERTYNDGEITSAG-INVHELIFPDGDAPTVD-IVSNWLTIVNNVIKNNRAVAVHCVAGLGR 183 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHHHcC-CeEEEeecCCCCCCCHH-HHHHHHHHHHHHHhcCCeEEEECCCCCCH
Confidence 35679999999999999987533 2345555 99999999999887765 58999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Q psy16347 106 SVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELME 155 (288)
Q Consensus 106 S~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~ 155 (288)
|++++++|||. .|++.+||+++||++||.+ ++..|+.+|+.|+++..+
T Consensus 184 TGtl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 184 APVLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKK 231 (241)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccc
Confidence 99999999998 6999999999999999998 488999999999997643
No 11
>KOG1720|consensus
Probab=99.86 E-value=1.1e-20 Score=160.66 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=124.7
Q ss_pred ceeceeeeeeCCccccccCCcccCC----------CCCChHHHHhCCCcEEEEcCCCCCc--ccccCCCeEEEEEeeCCC
Q psy16347 2 VWRATGRWLDTPTISSLSTPIAKIN----------RGGPISTLGTHYRDYVLNVTADLPN--VFEATGSIKYMQIPIADH 69 (288)
Q Consensus 2 ~~~~~~~Wi~~~~l~~~~~pig~~~----------~~~~~~~L~~~gI~~Vlnl~~~~~~--~~~~~~~i~~l~ipi~D~ 69 (288)
|.++.+.||++++++....|.-... ...-+..++.++++.++.+..-.++ .+...| |.++++++.|.
T Consensus 48 ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vrln~~~yd~~~f~~~G-i~h~~l~f~Dg 126 (225)
T KOG1720|consen 48 VENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVRLNKRLYDAKRFTDAG-IDHHDLFFADG 126 (225)
T ss_pred cCCCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEEcCCCCCChHHhcccC-ceeeeeecCCC
Confidence 6788999999998888887743322 1123567788999999999876533 455555 99999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy16347 70 WSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSF 149 (288)
Q Consensus 70 ~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~ 149 (288)
..+++.. +.++++.++.+.+ |++|.|||.+|.|||++|++||||+.+|++..||+..+|..||.+...+.+...+.++
T Consensus 127 ~tP~~~~-v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q 204 (225)
T KOG1720|consen 127 STPTDAI-VKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQ 204 (225)
T ss_pred CCCCHHH-HHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHH
Confidence 9998875 8899999999988 9999999999999999999999999999999999999999999999999988777665
Q ss_pred HH
Q psy16347 150 EK 151 (288)
Q Consensus 150 e~ 151 (288)
-.
T Consensus 205 ~~ 206 (225)
T KOG1720|consen 205 RD 206 (225)
T ss_pred HH
Confidence 44
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-15 Score=128.99 Aligned_cols=77 Identities=34% Similarity=0.519 Sum_probs=68.3
Q ss_pred CeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHhCC-CCHHHHHHHHHHhCCC
Q psy16347 58 SIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALR-LSLNDAFTLVRARKSN 135 (288)
Q Consensus 58 ~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~-~~~~~A~~~v~~~rp~ 135 (288)
++.++++|+.|+..+++. .+++++++|+...++|++|+|||.+|+|||++|++||||...+ ...++|+..++.+||.
T Consensus 72 ~~~~~~~~~~D~~~p~~~-~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~ 149 (180)
T COG2453 72 GIQVLHLPILDGTVPDLE-DLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG 149 (180)
T ss_pred CceeeeeeecCCCCCcHH-HHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc
Confidence 599999999999999995 5999999999999999999999999999999999999999955 5566666667776665
No 13
>KOG1717|consensus
Probab=99.63 E-value=1e-16 Score=140.71 Aligned_cols=74 Identities=38% Similarity=0.573 Sum_probs=72.1
Q ss_pred CCCCCCceeeeeeecCccccCCCccc---cceEEEEecCCCCcccccCCCeEEEEEeeCCCCCCChhhhhHHHhccC
Q psy16347 215 TPGTDKLCTSHVITRGGNQFARPSFI---ITTYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288 (288)
Q Consensus 215 ~~~~~~~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~~~~~~~~~~~~y~~i~v~D~~~~~l~~~f~~~~~FI 288 (288)
..++|++|+|+||||+..++.|.+.| ||+|||||+.+.|+.|+.+++|+|++||+.|...++|+++|+||+.||
T Consensus 168 ra~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfI 244 (343)
T KOG1717|consen 168 RASFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFI 244 (343)
T ss_pred ccCcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHH
Confidence 67899999999999999999999999 999999999999999998899999999999999999999999999998
No 14
>KOG2836|consensus
Probab=99.60 E-value=6.7e-15 Score=117.08 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=92.6
Q ss_pred CChHHHHhCCCcEEEEcCCCCCc--ccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHh--CCCeEEEEcCCCCc
Q psy16347 29 GPISTLGTHYRDYVLNVTADLPN--VFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARS--QDTGVLVHCLAGVS 104 (288)
Q Consensus 29 ~~~~~L~~~gI~~Vlnl~~~~~~--~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~--~~~~vlvHC~~G~~ 104 (288)
.-++.|+++|+++||.+|+...+ ..+++| |..+..|++|...++.. ..++..+.+..... -|..|.|||.+|+|
T Consensus 32 ~fieELkKygvttvVRVCe~TYdt~~lek~G-I~Vldw~f~dg~ppp~q-vv~~w~~l~~~~f~e~p~~cvavhcvaglg 109 (173)
T KOG2836|consen 32 KFIEELKKYGVTTVVRVCEPTYDTTPLEKEG-ITVLDWPFDDGAPPPNQ-VVDDWLSLVKTKFREEPGCCVAVHCVAGLG 109 (173)
T ss_pred HHHHHHHhcCCeEEEEecccccCCchhhhcC-ceEeecccccCCCCchH-HHHHHHHHHHHHHhhCCCCeEEEEeecccC
Confidence 45689999999999999986544 345555 99999999988765443 57777777655444 36779999999999
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy16347 105 RSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFE 150 (288)
Q Consensus 105 RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e 150 (288)
|.+.+++..|+.. ||.+++|++++|++|+.+. |..++..|..|.
T Consensus 110 rapvlvalalie~-gmkyedave~ir~krrga~-n~kql~~lekyr 153 (173)
T KOG2836|consen 110 RAPVLVALALIEA-GMKYEDAVEMIRQKRRGAI-NSKQLLYLEKYR 153 (173)
T ss_pred cchHHHHHHHHHc-cccHHHHHHHHHHHhhccc-cHHHHHHHHHhC
Confidence 9999998888887 9999999999999998884 545444555443
No 15
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.53 E-value=3.7e-14 Score=117.99 Aligned_cols=97 Identities=23% Similarity=0.331 Sum_probs=65.9
Q ss_pred CCChHHHHhCCCcEEEEcCCC----------CCcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEE
Q psy16347 28 GGPISTLGTHYRDYVLNVTAD----------LPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLV 97 (288)
Q Consensus 28 ~~~~~~L~~~gI~~Vlnl~~~----------~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlv 97 (288)
..|++.|++.|++.||.+++. +...+.+.| +.++++||.|...|+... +.+++..+...+++|++|+|
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~G-i~~~h~PI~D~~aPd~~~-~~~i~~eL~~~L~~g~~V~v 138 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARG-IAWHHLPIPDGSAPDFAA-AWQILEELAARLENGRKVLV 138 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT--EEEE----TTS---HHH-HHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcC-CEEEecCccCCCCCCHHH-HHHHHHHHHHHHHcCCEEEE
Confidence 467789999999999999863 122344555 999999999999998765 56788999999999999999
Q ss_pred EcCCCCchHHHHHHHHHHHhC-CCCHHHHH
Q psy16347 98 HCLAGVSRSVTITVAYLMSAL-RLSLNDAF 126 (288)
Q Consensus 98 HC~~G~~RS~~l~~aylm~~~-~~~~~~A~ 126 (288)
||..|.|||+++++++|+... +++.++|+
T Consensus 139 HC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 139 HCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp E-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 999999999999999988764 48888885
No 16
>KOG1718|consensus
Probab=99.31 E-value=1.2e-12 Score=108.12 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=63.9
Q ss_pred CCceeeeeeecCccccCCCccc---cceEEEEecCCCCcccccCCCeEEEEEeeCCCCCCChhhhhHHHhccC
Q psy16347 219 DKLCTSHVITRGGNQFARPSFI---ITTYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288 (288)
Q Consensus 219 ~~~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~~~~~~~~~~~~y~~i~v~D~~~~~l~~~f~~~~~FI 288 (288)
-++|+|+|||+++..|.++.+| |||+|||++.+.|+... ++++|+.||+.|.|++.|..|||.++|-|
T Consensus 17 ~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l--~~~qy~kv~~~D~p~~~l~~hfD~vAD~I 87 (198)
T KOG1718|consen 17 MSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSL--PDIQYMKVPLEDTPQARLYDHFDPVADKI 87 (198)
T ss_pred hhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccC--CCceeEEEEcccCCcchhhhhhhHHHHHH
Confidence 4599999999999999999888 99999999999999888 88999999999999999999999998865
No 17
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.21 E-value=1.8e-10 Score=93.93 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=75.9
Q ss_pred cccCCCCCChHHHHhCCCcEEEEcCCCCC-----cc-----cccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhC
Q psy16347 22 IAKINRGGPISTLGTHYRDYVLNVTADLP-----NV-----FEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQ 91 (288)
Q Consensus 22 ig~~~~~~~~~~L~~~gI~~Vlnl~~~~~-----~~-----~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~ 91 (288)
+++.....+++.|+++||++|||+.++.+ .. .....++.|+++|+..... +.. ......++++ ..
T Consensus 11 ~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~~-~v~~f~~~~~---~~ 85 (135)
T TIGR01244 11 VSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TPD-DVETFRAAIG---AA 85 (135)
T ss_pred EcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CHH-HHHHHHHHHH---hC
Confidence 33444788999999999999999986421 11 1012359999999885432 211 2333334343 44
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCC
Q psy16347 92 DTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIA 137 (288)
Q Consensus 92 ~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~ 137 (288)
.++||+||..|. ||+++.+.++.. .|++.+++++..+.......
T Consensus 86 ~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 86 EGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred CCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 689999999999 997777665555 79999999999998765544
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.21 E-value=1.9e-10 Score=88.12 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=69.5
Q ss_pred EEEEEeeCCCCCCCHHhHHHHHHHHHHHHHh---CCCeEEEEcCCCCchHHHHHHHHHHHhC------CCCHHHHHHHHH
Q psy16347 60 KYMQIPIADHWSQNLATYFPQAIQFIEEARS---QDTGVLVHCLAGVSRSVTITVAYLMSAL------RLSLNDAFTLVR 130 (288)
Q Consensus 60 ~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~---~~~~vlvHC~~G~~RS~~l~~aylm~~~------~~~~~~A~~~v~ 130 (288)
.|...+|.|...++....+.++++.++...+ .+++|+|||.+|.|||++++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4566678887767665567777777776654 3689999999999999999999988763 378899999999
Q ss_pred HhCCCCCCCHHHHHHH
Q psy16347 131 ARKSNIAPNFHFMEQL 146 (288)
Q Consensus 131 ~~rp~~~p~~~f~~~L 146 (288)
..|+....+..+...+
T Consensus 84 ~~r~~~~~~~~q~~~~ 99 (105)
T smart00404 84 KQRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhhCCcHHHHHHH
Confidence 9999998887766544
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.21 E-value=1.9e-10 Score=88.12 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=69.5
Q ss_pred EEEEEeeCCCCCCCHHhHHHHHHHHHHHHHh---CCCeEEEEcCCCCchHHHHHHHHHHHhC------CCCHHHHHHHHH
Q psy16347 60 KYMQIPIADHWSQNLATYFPQAIQFIEEARS---QDTGVLVHCLAGVSRSVTITVAYLMSAL------RLSLNDAFTLVR 130 (288)
Q Consensus 60 ~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~---~~~~vlvHC~~G~~RS~~l~~aylm~~~------~~~~~~A~~~v~ 130 (288)
.|...+|.|...++....+.++++.++...+ .+++|+|||.+|.|||++++++|++... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4566678887767665567777777776654 3689999999999999999999988763 378899999999
Q ss_pred HhCCCCCCCHHHHHHH
Q psy16347 131 ARKSNIAPNFHFMEQL 146 (288)
Q Consensus 131 ~~rp~~~p~~~f~~~L 146 (288)
..|+....+..+...+
T Consensus 84 ~~r~~~~~~~~q~~~~ 99 (105)
T smart00012 84 KQRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhhCCcHHHHHHH
Confidence 9999998887766544
No 20
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.20 E-value=3.9e-11 Score=101.07 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=70.8
Q ss_pred CCCChHHHHhCCCcEEEEcCCCCCc----ccccCCCeEEEEEeeCCCCC---CCHHhHHHHHHHHHHHHHhCCCeEEEEc
Q psy16347 27 RGGPISTLGTHYRDYVLNVTADLPN----VFEATGSIKYMQIPIADHWS---QNLATYFPQAIQFIEEARSQDTGVLVHC 99 (288)
Q Consensus 27 ~~~~~~~L~~~gI~~Vlnl~~~~~~----~~~~~~~i~~l~ipi~D~~~---~~l~~~~~~~~~fI~~~~~~~~~vlvHC 99 (288)
.+.++..|+++|+++||+|+.+.+. .+.+..+++++++++..... +-..+.+.++++.|.+.. ..+|||||
T Consensus 21 ~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~--n~PvLiHC 98 (164)
T PF03162_consen 21 TPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPR--NYPVLIHC 98 (164)
T ss_dssp -HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GG--G-SEEEE-
T ss_pred ChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCC--CCCEEEEe
Confidence 6788999999999999999987432 23334459999999976554 222345777777665543 47999999
Q ss_pred CCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Q psy16347 100 LAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELME 155 (288)
Q Consensus 100 ~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~ 155 (288)
..|..||++|+++|- +..||++..|++..+.--.. ..+......+..|+..+..
T Consensus 99 ~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~~~~~ 152 (164)
T PF03162_consen 99 NHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDVELVV 152 (164)
T ss_dssp SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT-------
T ss_pred CCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCcceec
Confidence 999999999999988 67899999998888763211 2344444445555554443
No 21
>KOG1716|consensus
Probab=99.11 E-value=5.6e-11 Score=108.69 Aligned_cols=74 Identities=30% Similarity=0.394 Sum_probs=66.6
Q ss_pred CCCCCCceeeeeeecCccccCCCccc---cceEEEEecCCCCccc-ccCCCeEEEEEeeCCCCCCChhhhhHHHhccC
Q psy16347 215 TPGTDKLCTSHVITRGGNQFARPSFI---ITTYVLNVTADLPNVF-EATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288 (288)
Q Consensus 215 ~~~~~~~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~~~~~-~~~~~~~y~~i~v~D~~~~~l~~~f~~~~~FI 288 (288)
++..+++|.|+||+|+..++.+...| |||||+||+...|+.+ ...+.++|++|++.|++.+||.+||+++++||
T Consensus 71 ~~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI 148 (285)
T KOG1716|consen 71 TGNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFI 148 (285)
T ss_pred ccCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHH
Confidence 45678899999999999999999999 9999999999988862 32247999999999999999999999999997
No 22
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=98.98 E-value=4.9e-10 Score=91.08 Aligned_cols=68 Identities=26% Similarity=0.477 Sum_probs=61.5
Q ss_pred CCceeeeeeecCccccCCCccc---cceEEEEecCCCCcccccCCCeEEEEEeeCCCCCCChhhhhHHHhccC
Q psy16347 219 DKLCTSHVITRGGNQFARPSFI---ITTYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288 (288)
Q Consensus 219 ~~~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~~~~~~~~~~~~y~~i~v~D~~~~~l~~~f~~~~~FI 288 (288)
|++|+|+||+|+..++.+.+.| ||++|||++.+.+.... .+++|+++|+.|.+..++.++|+.+.+||
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~--~~~~~~~ipi~D~~~~~~~~~~~~~~~~i 71 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNLNK--KGFTYLGVPILDNTETKISPYFPEAVEFI 71 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCC--CCCEEEEEECCCCCCCChHHHHHHHHHHH
Confidence 7899999999999999998888 99999999987665444 67999999999999999999999999886
No 23
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.93 E-value=6.1e-09 Score=91.98 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=63.5
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHHh--CCCeEEEEcCCCCchHHHHHHHHHHHhC-----CCCHHHHHHHHHHhCCCCCC
Q psy16347 66 IADHWSQNLATYFPQAIQFIEEARS--QDTGVLVHCLAGVSRSVTITVAYLMSAL-----RLSLNDAFTLVRARKSNIAP 138 (288)
Q Consensus 66 i~D~~~~~l~~~~~~~~~fI~~~~~--~~~~vlvHC~~G~~RS~~l~~aylm~~~-----~~~~~~A~~~v~~~rp~~~p 138 (288)
|.|...++..+.+.++++.++.... .+++|+|||.+|+|||+++++++++... ..++.+|+..+|+.|+.+..
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~ 217 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccC
Confidence 5566555544446666666665542 4689999999999999999999876543 59999999999999999999
Q ss_pred CHHHHHHHH
Q psy16347 139 NFHFMEQLN 147 (288)
Q Consensus 139 ~~~f~~~L~ 147 (288)
++.+...+.
T Consensus 218 ~~~Qy~f~~ 226 (231)
T cd00047 218 TEEQYIFLY 226 (231)
T ss_pred CHHHHHHHH
Confidence 988776654
No 24
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.89 E-value=3.6e-09 Score=88.91 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCCChHHHHhCCCcEEEEcCCCCCcc----cccCCCeEEEEEeeCCCCCCC---HH----------hH------------
Q psy16347 27 RGGPISTLGTHYRDYVLNVTADLPNV----FEATGSIKYMQIPIADHWSQN---LA----------TY------------ 77 (288)
Q Consensus 27 ~~~~~~~L~~~gI~~Vlnl~~~~~~~----~~~~~~i~~l~ipi~D~~~~~---l~----------~~------------ 77 (288)
...+.+.|.++||++||+|..+.+.. .... +++++++|+.+..... +. ..
T Consensus 31 t~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~-g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~ 109 (164)
T PF13350_consen 31 TEADLERLRELGIRTIIDLRSPTERERAPDPLID-GVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESY 109 (164)
T ss_dssp -HHHHHHHHHTT--EEEE-S-HHHHHHHS----T-T-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGST
T ss_pred CHHHHHHHHhCCCCEEEECCCccccccCCCCCcC-CceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhh
Confidence 56688999999999999998742211 1122 5999999998665441 10 00
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHH
Q psy16347 78 FPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTL 128 (288)
Q Consensus 78 ~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~ 128 (288)
-...-++++...+..++||+||++|+.||+.+ +|.|+...|.+-++.++.
T Consensus 110 ~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~-~alll~~lGV~~~~I~~D 159 (164)
T PF13350_consen 110 AEAYRKIFELLADAPGPVLFHCTAGKDRTGVV-AALLLSLLGVPDEDIIAD 159 (164)
T ss_dssp HHHHHHHHHHHH-TT--EEEE-SSSSSHHHHH-HHHHHHHTT--HHHHHHH
T ss_pred hHHHHHHHHHhccCCCcEEEECCCCCccHHHH-HHHHHHHcCCCHHHHHHH
Confidence 01111222333334579999999999999555 455667779999888654
No 25
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.88 E-value=1.1e-08 Score=91.94 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=62.9
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHHHhC-CCeEEEEcCCCCchHHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCCC
Q psy16347 65 PIADHWSQNLATYFPQAIQFIEEARSQ-DTGVLVHCLAGVSRSVTITVAYLMSA-----LRLSLNDAFTLVRARKSNIAP 138 (288)
Q Consensus 65 pi~D~~~~~l~~~~~~~~~fI~~~~~~-~~~vlvHC~~G~~RS~~l~~aylm~~-----~~~~~~~A~~~v~~~rp~~~p 138 (288)
.|.|...+.....+.+++..++..... +++|+|||.+|.|||+++++++++.. ...++.+++..+|+.|+.+..
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~ 244 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQ 244 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccC
Confidence 455665553333455555555555443 68999999999999999999987643 358999999999999999999
Q ss_pred CHHHHHHHH
Q psy16347 139 NFHFMEQLN 147 (288)
Q Consensus 139 ~~~f~~~L~ 147 (288)
+..++..+.
T Consensus 245 ~~~Qy~f~~ 253 (258)
T smart00194 245 TEEQYIFLY 253 (258)
T ss_pred CHHHHHHHH
Confidence 988776553
No 26
>PLN02727 NAD kinase
Probab=98.87 E-value=7e-09 Score=105.58 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=78.2
Q ss_pred CCcccCCCCCChHHHHhCCCcEEEEcCCCCCc--ccc-------cCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHh
Q psy16347 20 TPIAKINRGGPISTLGTHYRDYVLNVTADLPN--VFE-------ATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARS 90 (288)
Q Consensus 20 ~pig~~~~~~~~~~L~~~gI~~Vlnl~~~~~~--~~~-------~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~ 90 (288)
++.++.....+++.|.++||++|||+.++.+. .+. +..+++|+++|+.+...+... .+.++.+++++ .
T Consensus 263 ~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~E-qVe~fa~~l~~--s 339 (986)
T PLN02727 263 FWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAE-QVEKFASLVSD--S 339 (986)
T ss_pred EEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHH-HHHHHHHHHHh--h
Confidence 46666778889999999999999999875431 111 123599999999876665554 36666666644 3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHH
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDA 125 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A 125 (288)
..++||+||..|..|+++++++|+.+..+....++
T Consensus 340 lpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~~ 374 (986)
T PLN02727 340 SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLL 374 (986)
T ss_pred cCCCEEEECCCCCchHHHHHHHHHHHHcccchhhh
Confidence 46899999999999999999999999877654444
No 27
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.86 E-value=1.8e-08 Score=96.90 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=70.9
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHHHhCC---------CeEEEEcCCCCchHHHHHHHHHHHhCC-CCHHHHHHHHHHhCC
Q psy16347 65 PIADHWSQNLATYFPQAIQFIEEARSQD---------TGVLVHCLAGVSRSVTITVAYLMSALR-LSLNDAFTLVRARKS 134 (288)
Q Consensus 65 pi~D~~~~~l~~~~~~~~~fI~~~~~~~---------~~vlvHC~~G~~RS~~l~~aylm~~~~-~~~~~A~~~v~~~rp 134 (288)
.|.|++.++....+.++++.++.....+ ...+|||.+|+|||++++++|+|...+ .++++.+..+|..|+
T Consensus 430 nWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRn 509 (535)
T PRK15375 430 NWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRN 509 (535)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCC
Confidence 6678776654344666666666543221 234799999999999999999987544 899999999999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHH
Q psy16347 135 N-IAPNFHFMEQLNSFEKELM 154 (288)
Q Consensus 135 ~-~~p~~~f~~~L~~~e~~l~ 154 (288)
. +..+..++..|..++.+|.
T Consensus 510 g~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 510 NRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred ccccccHHHHHHHHHHHHHHh
Confidence 8 8899999999999887765
No 28
>KOG2283|consensus
Probab=98.77 E-value=2.1e-08 Score=96.15 Aligned_cols=143 Identities=18% Similarity=0.175 Sum_probs=99.5
Q ss_pred eCCccccccCCcccCCCC--CChH----HHHhC--CCcEEEEcCCCCCcccccCCCeEEEEEeeCCCCCCCHHhHHHHHH
Q psy16347 11 DTPTISSLSTPIAKINRG--GPIS----TLGTH--YRDYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAI 82 (288)
Q Consensus 11 ~~~~l~~~~~pig~~~~~--~~~~----~L~~~--gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~ 82 (288)
++.+|..|++|-...... ++++ .|... |==.|.||+.+.-...... .=+...+++.|+..|.+.. +..++
T Consensus 18 IT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f-~g~V~~~~~~Dh~~P~L~~-l~~~c 95 (434)
T KOG2283|consen 18 ITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRF-HGRVARFGFDDHNPPPLEL-LCPFC 95 (434)
T ss_pred eeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCcccc-ccceeecCCCCCCCCcHHH-HHHHH
Confidence 477888899995444321 2222 22211 1124778886321111111 1235668999999888874 88888
Q ss_pred HHHHHHHhCC--CeEEEEcCCCCchHHHHHHHHHHHhCCCC-HHHHHHHHHHhC---C--CCCCCHHHHHHHHHHHHHHH
Q psy16347 83 QFIEEARSQD--TGVLVHCLAGVSRSVTITVAYLMSALRLS-LNDAFTLVRARK---S--NIAPNFHFMEQLNSFEKELM 154 (288)
Q Consensus 83 ~fI~~~~~~~--~~vlvHC~~G~~RS~~l~~aylm~~~~~~-~~~A~~~v~~~r---p--~~~p~~~f~~~L~~~e~~l~ 154 (288)
+-++..+++. .-|.|||.+|.+||+++++||||+....+ .++|+.+.-.+| . ...-.|.+.+.+.-|+..|.
T Consensus 96 ~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~l~ 175 (434)
T KOG2283|consen 96 KSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRVLL 175 (434)
T ss_pred HCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHHhh
Confidence 8898888764 34889999999999999999999997755 999999999998 3 23456778888988888644
Q ss_pred H
Q psy16347 155 E 155 (288)
Q Consensus 155 ~ 155 (288)
.
T Consensus 176 ~ 176 (434)
T KOG2283|consen 176 N 176 (434)
T ss_pred c
Confidence 3
No 29
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.72 E-value=1.7e-07 Score=76.57 Aligned_cols=109 Identities=24% Similarity=0.274 Sum_probs=80.1
Q ss_pred hHHHHhCCCcEEEEcCCCC-----CcccccCCCeEEEEEeeCCCCCC------CHHhHHHHHHHHHHHHHhCCCeEEEEc
Q psy16347 31 ISTLGTHYRDYVLNVTADL-----PNVFEATGSIKYMQIPIADHWSQ------NLATYFPQAIQFIEEARSQDTGVLVHC 99 (288)
Q Consensus 31 ~~~L~~~gI~~Vlnl~~~~-----~~~~~~~~~i~~l~ipi~D~~~~------~l~~~~~~~~~fI~~~~~~~~~vlvHC 99 (288)
.+.-.+.|-+++|++.... |..... -+++.+-+.|...+ .-..+...+++|+++.-+. ...||||
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~---erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC 100 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAA---ERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHC 100 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccch---hhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeee
Confidence 4566678999999997631 212111 33555555554332 3345899999999988665 7999999
Q ss_pred CCCCchHHHHHH-HHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHH
Q psy16347 100 LAGVSRSVTITV-AYLMSALRLSLNDAFTLVRARKSNIAPNFHFM 143 (288)
Q Consensus 100 ~~G~~RS~~l~~-aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~ 143 (288)
.+|+|||+++++ +.|.....++-.|..+.++..+|.+.||+..+
T Consensus 101 ~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rli 145 (172)
T COG5350 101 YAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLI 145 (172)
T ss_pred ccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHH
Confidence 999999987664 34556668999999999999999999998743
No 30
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.71 E-value=2.8e-08 Score=78.18 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=43.8
Q ss_pred CCCCCChHHHHhCCCcEEEEcCCCCCc----------ccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCe
Q psy16347 25 INRGGPISTLGTHYRDYVLNVTADLPN----------VFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTG 94 (288)
Q Consensus 25 ~~~~~~~~~L~~~gI~~Vlnl~~~~~~----------~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~ 94 (288)
.-...+++.|++.|+++|||+.++.+. ...+..|+.|+++|+.-.. .. . ..+..|.+...+.+++
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-~~-~---~~v~~f~~~l~~~~~P 88 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA-IT-E---EDVEAFADALESLPKP 88 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT----H---HHHHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC-CC-H---HHHHHHHHHHHhCCCC
Confidence 347889999999999999999865211 1112235999999998543 22 2 2333333333345689
Q ss_pred EEEEcCCCCchHHHHHH
Q psy16347 95 VLVHCLAGVSRSVTITV 111 (288)
Q Consensus 95 vlvHC~~G~~RS~~l~~ 111 (288)
||+||..|. ||+++.+
T Consensus 89 vl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 89 VLAHCRSGT-RASALWA 104 (110)
T ss_dssp EEEE-SCSH-HHHHHHH
T ss_pred EEEECCCCh-hHHHHHH
Confidence 999999996 9866654
No 31
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.46 E-value=1.3e-06 Score=76.45 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=60.0
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHHH-hCCCeEEEEcCCCCchHHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCCC
Q psy16347 65 PIADHWSQNLATYFPQAIQFIEEAR-SQDTGVLVHCLAGVSRSVTITVAYLMSA-----LRLSLNDAFTLVRARKSNIAP 138 (288)
Q Consensus 65 pi~D~~~~~l~~~~~~~~~fI~~~~-~~~~~vlvHC~~G~~RS~~l~~aylm~~-----~~~~~~~A~~~v~~~rp~~~p 138 (288)
.|.|...+.-...+-++++.+.... ...++|+|||.+|.|||++++++.++.. ...++.+++..+|+.|+.+..
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~ 221 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQ 221 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSS
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccC
Confidence 4444444422223444445454444 3458999999999999999999887643 248999999999999999999
Q ss_pred CHHHHHHHH
Q psy16347 139 NFHFMEQLN 147 (288)
Q Consensus 139 ~~~f~~~L~ 147 (288)
+..++..+.
T Consensus 222 ~~~qy~f~~ 230 (235)
T PF00102_consen 222 SPEQYRFCY 230 (235)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988776554
No 32
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=98.44 E-value=1.9e-07 Score=75.50 Aligned_cols=70 Identities=27% Similarity=0.346 Sum_probs=60.0
Q ss_pred CCceeeeeeecCccccCCCccc---cceEEEEecCCCCcccccCCCeEEEEEeeCCCCCCChhhhhHHHhccC
Q psy16347 219 DKLCTSHVITRGGNQFARPSFI---ITTYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288 (288)
Q Consensus 219 ~~~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~~~~~~~~~~~~y~~i~v~D~~~~~l~~~f~~~~~FI 288 (288)
+++|.|+||+|+..++.+.+.| ||++|||++.+.........+++|+++|+.|.+..++...|+.+++||
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 74 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFI 74 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHH
Confidence 5799999999999999998888 999999999766542222267899999999999999999999998886
No 33
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.42 E-value=2e-06 Score=79.42 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=56.7
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHHHh------------CCCeEEEEcCCCCchHHHHHHHHHHH-----hCCCCHHHHHH
Q psy16347 65 PIADHWSQNLATYFPQAIQFIEEARS------------QDTGVLVHCLAGVSRSVTITVAYLMS-----ALRLSLNDAFT 127 (288)
Q Consensus 65 pi~D~~~~~l~~~~~~~~~fI~~~~~------------~~~~vlvHC~~G~~RS~~l~~aylm~-----~~~~~~~~A~~ 127 (288)
.|.|++.|.-...|-+.+..+..... ..++|+|||.+|+|||+++++...+. ....++.+++.
T Consensus 190 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~ 269 (303)
T PHA02742 190 DWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVR 269 (303)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55666655433334444444433211 13689999999999999988776543 22478999999
Q ss_pred HHHHhCCCCCCCHHHHHHH
Q psy16347 128 LVRARKSNIAPNFHFMEQL 146 (288)
Q Consensus 128 ~v~~~rp~~~p~~~f~~~L 146 (288)
.+|+.|+.+..+..+...+
T Consensus 270 ~lR~qR~~~Vqt~~QY~F~ 288 (303)
T PHA02742 270 DLRKQRHNCLSLPQQYIFC 288 (303)
T ss_pred HHHhhcccccCCHHHHHHH
Confidence 9999999999987766543
No 34
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.38 E-value=2.3e-06 Score=79.39 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=58.6
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHHHh-----------CCCeEEEEcCCCCchHHHHHHHHHHH-----hCCCCHHHHHHH
Q psy16347 65 PIADHWSQNLATYFPQAIQFIEEARS-----------QDTGVLVHCLAGVSRSVTITVAYLMS-----ALRLSLNDAFTL 128 (288)
Q Consensus 65 pi~D~~~~~l~~~~~~~~~fI~~~~~-----------~~~~vlvHC~~G~~RS~~l~~aylm~-----~~~~~~~~A~~~ 128 (288)
.|.|.+.|.-...|.+.+..++...+ ..++|+|||.+|+|||+++++..++. ....++.+++..
T Consensus 191 ~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~ 270 (312)
T PHA02747 191 EWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEK 270 (312)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55666655433334444444443322 12689999999999999998876432 234899999999
Q ss_pred HHHhCCCCCCCHHHHHHH
Q psy16347 129 VRARKSNIAPNFHFMEQL 146 (288)
Q Consensus 129 v~~~rp~~~p~~~f~~~L 146 (288)
+|+.|+.+..+..+...+
T Consensus 271 lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 271 IREQRHAGIMNFDDYLFI 288 (312)
T ss_pred HHhccccccCCHHHHHHH
Confidence 999999999998877665
No 35
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.38 E-value=3.4e-06 Score=77.73 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=57.5
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHHH---------hCCCeEEEEcCCCCchHHHHHHHHHHH-----hCCCCHHHHHHHHH
Q psy16347 65 PIADHWSQNLATYFPQAIQFIEEAR---------SQDTGVLVHCLAGVSRSVTITVAYLMS-----ALRLSLNDAFTLVR 130 (288)
Q Consensus 65 pi~D~~~~~l~~~~~~~~~fI~~~~---------~~~~~vlvHC~~G~~RS~~l~~aylm~-----~~~~~~~~A~~~v~ 130 (288)
.|.|++.|.-...|-+.+..+++.. ...++|+|||.+|+|||+++++...+. ....++.+++..+|
T Consensus 185 ~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR 264 (298)
T PHA02740 185 AWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVR 264 (298)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 6677766643333444333333221 124689999999999999998766443 23489999999999
Q ss_pred HhCCCCCCCHHHHHHH
Q psy16347 131 ARKSNIAPNFHFMEQL 146 (288)
Q Consensus 131 ~~rp~~~p~~~f~~~L 146 (288)
+.|+....+..+...+
T Consensus 265 ~qR~~~Vqt~~QY~F~ 280 (298)
T PHA02740 265 QKKYGCMNCLDDYVFC 280 (298)
T ss_pred hhCccccCCHHHHHHH
Confidence 9999999998776554
No 36
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.36 E-value=1.1e-06 Score=72.97 Aligned_cols=57 Identities=32% Similarity=0.556 Sum_probs=43.5
Q ss_pred CeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHH
Q psy16347 58 SIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMS 116 (288)
Q Consensus 58 ~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~ 116 (288)
++.|+++|+.|+..|... .|++.++++... .++..+.+||.+|.|||.+..+.|.|.
T Consensus 92 g~~Y~Ripitd~~~P~~~-~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 92 GLRYYRIPITDHQAPDPE-DIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp T-EEEEEEE-TTS---HH-HHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCcCCCCHH-HHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 599999999999877666 599999999988 667899999999999999888888664
No 37
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=98.32 E-value=2.3e-07 Score=74.63 Aligned_cols=62 Identities=27% Similarity=0.423 Sum_probs=54.5
Q ss_pred eeecCccccCCCccc---cceEEEEecCCCCc-ccccCCCeEEEEEeeCCCCCCChhhhhHHHhccC
Q psy16347 226 VITRGGNQFARPSFI---ITTYVLNVTADLPN-VFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288 (288)
Q Consensus 226 lylg~~~~a~~~~~l---~it~iln~~~~~~~-~~~~~~~~~y~~i~v~D~~~~~l~~~f~~~~~FI 288 (288)
||||+..+|. ...| |||+|||++.+.+. .+.....++|+++|+.|.+..++..+|+.+++||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i 66 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFI 66 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHH
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhh
Confidence 7999999999 8777 99999999988776 3333477999999999999999999999999986
No 38
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.32 E-value=6.3e-06 Score=76.79 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=46.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH-----hCCCCHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy16347 93 TGVLVHCLAGVSRSVTITVAYLMS-----ALRLSLNDAFTLVRARKSNIAPNFHFMEQLN 147 (288)
Q Consensus 93 ~~vlvHC~~G~~RS~~l~~aylm~-----~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~ 147 (288)
++|+|||.+|+|||+++++...+. ...+++.+++..+|..|+.+..+..+...+-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y 307 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCY 307 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 689999999999999998865432 2348999999999999999999987776554
No 39
>PHA02738 hypothetical protein; Provisional
Probab=98.21 E-value=8.9e-06 Score=75.71 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=57.4
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHHHh--------------CCCeEEEEcCCCCchHHHHHHHHHHH-----hCCCCHHHH
Q psy16347 65 PIADHWSQNLATYFPQAIQFIEEARS--------------QDTGVLVHCLAGVSRSVTITVAYLMS-----ALRLSLNDA 125 (288)
Q Consensus 65 pi~D~~~~~l~~~~~~~~~fI~~~~~--------------~~~~vlvHC~~G~~RS~~l~~aylm~-----~~~~~~~~A 125 (288)
.|.|.+.|.-...|-+.+..+.+..+ ..++|+|||.+|+|||+++++.-.+. ....++.++
T Consensus 186 ~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~ 265 (320)
T PHA02738 186 AWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSI 265 (320)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHH
Confidence 56666665433334444444443221 13689999999999999887665432 234899999
Q ss_pred HHHHHHhCCCCCCCHHHHHHH
Q psy16347 126 FTLVRARKSNIAPNFHFMEQL 146 (288)
Q Consensus 126 ~~~v~~~rp~~~p~~~f~~~L 146 (288)
+..+|+.|+....+..+...+
T Consensus 266 V~~lR~qR~~~vqt~~QY~F~ 286 (320)
T PHA02738 266 VSSIRNQRYYSLFIPFQYFFC 286 (320)
T ss_pred HHHHHhhhhhccCCHHHHHHH
Confidence 999999999999998877554
No 40
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.20 E-value=2.3e-05 Score=61.76 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=68.0
Q ss_pred cCCCCCChHHHHhCCCcEEEEcCCCCCc-----------ccccCCCeEEEEEeeCCCCCC-CHHhHHHHHHHHHHHHHhC
Q psy16347 24 KINRGGPISTLGTHYRDYVLNVTADLPN-----------VFEATGSIKYMQIPIADHWSQ-NLATYFPQAIQFIEEARSQ 91 (288)
Q Consensus 24 ~~~~~~~~~~L~~~gI~~Vlnl~~~~~~-----------~~~~~~~i~~l~ipi~D~~~~-~l~~~~~~~~~fI~~~~~~ 91 (288)
+.-.-.|+..++..|++.|||-.++.+. ..++. ++.|.++|+.-.... +-.+.|.+++ -+.
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~a-Gl~y~~iPV~~~~iT~~dV~~f~~Al------~ea 86 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAA-GLTYTHIPVTGGGITEADVEAFQRAL------DEA 86 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhc-CCceEEeecCCCCCCHHHHHHHHHHH------HHh
Confidence 3347789999999999999999875321 12223 599999999864433 1122233222 255
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q psy16347 92 DTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 132 (288)
Q Consensus 92 ~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~ 132 (288)
+++||.||..| +||.++-.--. ...||+.+|+..+=+..
T Consensus 87 egPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 87 EGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred CCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 79999999999 59855543333 66789999988776654
No 41
>KOG0792|consensus
Probab=98.14 E-value=8.4e-06 Score=83.88 Aligned_cols=89 Identities=17% Similarity=0.285 Sum_probs=70.6
Q ss_pred eEEEEE-eeCCCCCCCHHhHHHHHHHHHHHHHhC-CCeEEEEcCCCCchHHHHHHH----HHHHh-CCCCHHHHHHHHHH
Q psy16347 59 IKYMQI-PIADHWSQNLATYFPQAIQFIEEARSQ-DTGVLVHCLAGVSRSVTITVA----YLMSA-LRLSLNDAFTLVRA 131 (288)
Q Consensus 59 i~~l~i-pi~D~~~~~l~~~~~~~~~fI~~~~~~-~~~vlvHC~~G~~RS~~l~~a----ylm~~-~~~~~~~A~~~v~~ 131 (288)
+.|+.+ .|.|++.|+-..+|-+.++.|...+.. +.+|+|||.+|+|||+.++++ ||+.. ..+..-+.++.+|.
T Consensus 1028 V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~ 1107 (1144)
T KOG0792|consen 1028 VWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRD 1107 (1144)
T ss_pred eeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 334433 678888888777888888888888776 679999999999999988754 44443 34888999999999
Q ss_pred hCCCCCCCHHHHHHHH
Q psy16347 132 RKSNIAPNFHFMEQLN 147 (288)
Q Consensus 132 ~rp~~~p~~~f~~~L~ 147 (288)
.|-.+.++..+.....
T Consensus 1108 QR~~mVQT~~QYkFVy 1123 (1144)
T KOG0792|consen 1108 QRAMMVQTLSQYKFVY 1123 (1144)
T ss_pred HHhhhccchHHhhHHH
Confidence 9999999988776653
No 42
>PRK12361 hypothetical protein; Provisional
Probab=98.05 E-value=3.3e-06 Score=84.08 Aligned_cols=67 Identities=27% Similarity=0.287 Sum_probs=56.2
Q ss_pred CCceeeeeeecCccccCCCccc---cceEEEEecCCCCc----ccccCCCeEEEEEeeCCCCCCChhhhhHHHhccC
Q psy16347 219 DKLCTSHVITRGGNQFARPSFI---ITTYVLNVTADLPN----VFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288 (288)
Q Consensus 219 ~~~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~~~----~~~~~~~~~y~~i~v~D~~~~~l~~~f~~~~~FI 288 (288)
+++|.|+||+|+...+.+.+.| |||+|||++.+.+. .+. .+++|++||+.|....+ .++|+++++||
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~--~~i~yl~iPi~D~~~p~-~~~l~~a~~~i 168 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTE--EDIDYLNIPILDHSVPT-LAQLNQAINWI 168 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccc--cCceEEEeecCCCCCCc-HHHHHHHHHHH
Confidence 4699999999999999999888 99999999977653 122 56899999999987654 57899999986
No 43
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.95 E-value=1.5e-05 Score=71.03 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=60.2
Q ss_pred eEEEEE-eeCCCCCCCHHhHHHHHHHHHHHHH---hCCCeEEEEcCCCCchHHHHHHHHHHHhCCCC-------------
Q psy16347 59 IKYMQI-PIADHWSQNLATYFPQAIQFIEEAR---SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS------------- 121 (288)
Q Consensus 59 i~~l~i-pi~D~~~~~l~~~~~~~~~fI~~~~---~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~------------- 121 (288)
+.++++ .|.|...+++. +..++++... .+.++++|||.||+|||+++++.-.+...-.+
T Consensus 185 Ihhf~y~nW~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D 260 (302)
T COG5599 185 IHHFQYINWVDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQD 260 (302)
T ss_pred EEEEEecCccccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhh
Confidence 334443 57788877544 4556666555 35689999999999999998876644433211
Q ss_pred -HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Q psy16347 122 -LNDAFTLVRARKSNIAPNFHFMEQLNSFEKELM 154 (288)
Q Consensus 122 -~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~ 154 (288)
....+..+|++|-.+..|..++..|...-..|.
T Consensus 261 ~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 261 LIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 123467788888777777776666654444444
No 44
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.91 E-value=0.0002 Score=69.37 Aligned_cols=114 Identities=22% Similarity=0.333 Sum_probs=86.5
Q ss_pred hCCCcEEEEcCCCCCcccccCCCeEEEEEeeCCCC--CCCHHhHHHHHHHHHHHHHhC--CCeEEEEcCCCCchHHHHHH
Q psy16347 36 THYRDYVLNVTADLPNVFEATGSIKYMQIPIADHW--SQNLATYFPQAIQFIEEARSQ--DTGVLVHCLAGVSRSVTITV 111 (288)
Q Consensus 36 ~~gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~--~~~l~~~~~~~~~fI~~~~~~--~~~vlvHC~~G~~RS~~l~~ 111 (288)
......||+|.+.............++++++.... .-++...+++++.|+...+.+ +++|||+|..|...|+++++
T Consensus 316 ~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaL 395 (451)
T PF04179_consen 316 ESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVAL 395 (451)
T ss_pred CCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHH
Confidence 45788999998754221112223779999887553 346778999999999999988 89999999999999999999
Q ss_pred HHHHHhCCCC--H--------------HHHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy16347 112 AYLMSALRLS--L--------------NDAFTLVRARKSNIAPNFHFMEQLNSF 149 (288)
Q Consensus 112 aylm~~~~~~--~--------------~~A~~~v~~~rp~~~p~~~f~~~L~~~ 149 (288)
|.|+..++.. + ..-+.++.+.+|.+.|+...++++..|
T Consensus 396 aILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 396 AILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 9998876531 1 122677778888889988888777655
No 45
>KOG2386|consensus
Probab=97.88 E-value=2.8e-05 Score=73.30 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=84.7
Q ss_pred ChHHHHhC--CCcEEEEcCCCCC----cccccCCCeEEEEEeeCCCCC-CCH---HhHHHHHHHHHHHHHhCCCeEEEEc
Q psy16347 30 PISTLGTH--YRDYVLNVTADLP----NVFEATGSIKYMQIPIADHWS-QNL---ATYFPQAIQFIEEARSQDTGVLVHC 99 (288)
Q Consensus 30 ~~~~L~~~--gI~~Vlnl~~~~~----~~~~~~~~i~~l~ipi~D~~~-~~l---~~~~~~~~~fI~~~~~~~~~vlvHC 99 (288)
.++.|+.+ .+.-+++++...- ...+.. ++.|+.+...-... +.. .......-.|+......+.=|+|||
T Consensus 53 l~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~-g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhc 131 (393)
T KOG2386|consen 53 LFELLKEHNYKVGLKIDLTNTLRYYDKPELEER-GVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHC 131 (393)
T ss_pred HHHHHHhcCceEEEEEeccceeeeecccccccc-ceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeC
Confidence 34555555 5668888876431 223334 48888887765542 222 2223334445555555678899999
Q ss_pred CCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy16347 100 LAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEK 151 (288)
Q Consensus 100 ~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~ 151 (288)
+.|..|++-|+++|||...+++..+|+..+...|+...-....+..|...+.
T Consensus 132 thG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~ 183 (393)
T KOG2386|consen 132 THGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYH 183 (393)
T ss_pred CCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccc
Confidence 9999999999999999999999999999999999887666665655554433
No 46
>KOG1572|consensus
Probab=97.86 E-value=0.00015 Score=63.73 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCCChHHHHhCCCcEEEEcCCCC-Cc---ccccCCCeEEEEEeeCCCC-------CCCHHhHHHHHHHHHHHHHhCCCeE
Q psy16347 27 RGGPISTLGTHYRDYVLNVTADL-PN---VFEATGSIKYMQIPIADHW-------SQNLATYFPQAIQFIEEARSQDTGV 95 (288)
Q Consensus 27 ~~~~~~~L~~~gI~~Vlnl~~~~-~~---~~~~~~~i~~l~ipi~D~~-------~~~l~~~~~~~~~fI~~~~~~~~~v 95 (288)
...+...|+..+.+.||.|+++. |. .|.+..+|++.++-+.... .+...+.+..+++++- ...+.++
T Consensus 74 ~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~ll--d~~N~P~ 151 (249)
T KOG1572|consen 74 RPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLL--DKRNYPI 151 (249)
T ss_pred CccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHh--cccCCce
Confidence 77899999999999999999873 22 1344445999999887544 2233445666776633 3456899
Q ss_pred EEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q psy16347 96 LVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 132 (288)
Q Consensus 96 lvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~ 132 (288)
||||..|..|+++|+.+.- +..+|++.-.+...+..
T Consensus 152 Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 152 LIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred EEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 9999999999988887755 77789998887766653
No 47
>KOG0790|consensus
Probab=97.74 E-value=9.6e-05 Score=70.05 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=76.6
Q ss_pred ChHHHHhCCCcEEEEcCCCCCcc--------------cccCCCeEEEEEeeCCCCCCCH----HhHHHHHHHHHHHHHhC
Q psy16347 30 PISTLGTHYRDYVLNVTADLPNV--------------FEATGSIKYMQIPIADHWSQNL----ATYFPQAIQFIEEARSQ 91 (288)
Q Consensus 30 ~~~~L~~~gI~~Vlnl~~~~~~~--------------~~~~~~i~~l~ipi~D~~~~~l----~~~~~~~~~fI~~~~~~ 91 (288)
+...++.+|+-.|-|+.+..-.. -....-..|+..-|.|++.|.- +.+++++..- ...+..
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~r-q~~l~~ 450 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHR-QESLMD 450 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhh-hccccc
Confidence 55678899999999987621110 0011126677778999987632 2222222222 333445
Q ss_pred CCeEEEEcCCCCchHHHHHHHH-HH---HhCC----CCHHHHHHHHHHhCCCCCCCHHHHHHH
Q psy16347 92 DTGVLVHCLAGVSRSVTITVAY-LM---SALR----LSLNDAFTLVRARKSNIAPNFHFMEQL 146 (288)
Q Consensus 92 ~~~vlvHC~~G~~RS~~l~~ay-lm---~~~~----~~~~~A~~~v~~~rp~~~p~~~f~~~L 146 (288)
.++|.|||.||+|||+++++.= || ...| +++...+++||..|.....+..+.+.+
T Consensus 451 AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 451 AGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFI 513 (600)
T ss_pred cCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHH
Confidence 6799999999999999866433 33 3334 788899999999999998887766553
No 48
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.70 E-value=0.00013 Score=65.51 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCC-CeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCC
Q psy16347 79 PQAIQFIEEARSQD-TGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPN 139 (288)
Q Consensus 79 ~~~~~fI~~~~~~~-~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~ 139 (288)
+....++.-.+..+ ++||+||.+|..|++.+++.|+....+.....+-+++..-++.....
T Consensus 122 e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~ 183 (249)
T COG2365 122 ERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPER 183 (249)
T ss_pred HHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhh
Confidence 33444444444454 99999999999999999999999986666667777777665544333
No 49
>KOG0791|consensus
Probab=97.45 E-value=0.00069 Score=63.00 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=62.7
Q ss_pred eEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhC-CCeEEEEcCCCCchHHHHHHHH-HHHhCC----CCHHHHHHHHHHh
Q psy16347 59 IKYMQIPIADHWSQNLATYFPQAIQFIEEARSQ-DTGVLVHCLAGVSRSVTITVAY-LMSALR----LSLNDAFTLVRAR 132 (288)
Q Consensus 59 i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~-~~~vlvHC~~G~~RS~~l~~ay-lm~~~~----~~~~~A~~~v~~~ 132 (288)
..++...+.|++.+.....+.+.+....+.+.. .+.++|||.+|+|||+++.+.- |++..+ .+.-.++..+|..
T Consensus 253 r~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~ 332 (374)
T KOG0791|consen 253 RHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSA 332 (374)
T ss_pred EEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhc
Confidence 344555778888774433344444444444443 5789999999999999988665 444333 5566678888999
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy16347 133 KSNIAPNFHFMEQLNSF 149 (288)
Q Consensus 133 rp~~~p~~~f~~~L~~~ 149 (288)
|+.+.++..++..|..-
T Consensus 333 R~~mVqte~Qyvfl~~c 349 (374)
T KOG0791|consen 333 RMLMVQTEDQYVFLHQC 349 (374)
T ss_pred cccccchHHHHHHHHHH
Confidence 99999998877666543
No 50
>KOG0789|consensus
Probab=97.43 E-value=0.0009 Score=63.92 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=55.3
Q ss_pred EEEEEeeCCCCCCCHHhHHHHHHHHHH----HHHhCCCeEEEEcCCCCchHHHHHHHH-HHHh--C---CCCHHHHHHHH
Q psy16347 60 KYMQIPIADHWSQNLATYFPQAIQFIE----EARSQDTGVLVHCLAGVSRSVTITVAY-LMSA--L---RLSLNDAFTLV 129 (288)
Q Consensus 60 ~~l~ipi~D~~~~~l~~~~~~~~~fI~----~~~~~~~~vlvHC~~G~~RS~~l~~ay-lm~~--~---~~~~~~A~~~v 129 (288)
.|++..|.|.+.++- ...++.++. ......+++.|||.+|.|||+++++.- .+.. . .....+.+..+
T Consensus 266 ~~~~~~WPd~~~p~~---~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~i 342 (415)
T KOG0789|consen 266 HYHYINWPDHGAPDS---VKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREI 342 (415)
T ss_pred EEeeCCCccccCCcc---hHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 344446666654442 233444443 222235899999999999999998654 2222 2 24488888899
Q ss_pred HHhCCCCCCCHHHHHHHH
Q psy16347 130 RARKSNIAPNFHFMEQLN 147 (288)
Q Consensus 130 ~~~rp~~~p~~~f~~~L~ 147 (288)
|..|+.+..+..+...+.
T Consensus 343 R~qR~~~vqt~~Qy~f~~ 360 (415)
T KOG0789|consen 343 RYQRPGAVQSPLQYLFIY 360 (415)
T ss_pred HHHhhhcccchhHHHHHH
Confidence 999999988877764443
No 51
>KOG0793|consensus
Probab=96.10 E-value=0.02 Score=57.42 Aligned_cols=91 Identities=12% Similarity=0.216 Sum_probs=53.5
Q ss_pred EEEEeeCCCCCCCHHhHHHHHHHHHHHHH-hCCCeEEEEcCCCCchHHHHHHHHH----HHh--CCCCHHHHHHHHHHhC
Q psy16347 61 YMQIPIADHWSQNLATYFPQAIQFIEEAR-SQDTGVLVHCLAGVSRSVTITVAYL----MSA--LRLSLNDAFTLVRARK 133 (288)
Q Consensus 61 ~l~ipi~D~~~~~l~~~~~~~~~fI~~~~-~~~~~vlvHC~~G~~RS~~l~~ayl----m~~--~~~~~~~A~~~v~~~r 133 (288)
++.+-|.+.+.+....-+-++-+-+.++. -+..+|+|||.+|-|||++-++.=+ |.+ ..++....++++|..|
T Consensus 895 FHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR 974 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQR 974 (1004)
T ss_pred eeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcC
Confidence 34445555555544332333323333332 2457799999999999988543322 222 1256666799999999
Q ss_pred CCCCCCHHHH-HHHHHHHH
Q psy16347 134 SNIAPNFHFM-EQLNSFEK 151 (288)
Q Consensus 134 p~~~p~~~f~-~~L~~~e~ 151 (288)
|.+.-+..++ ..|....+
T Consensus 975 ~GmVaTkdQFef~l~aVAe 993 (1004)
T KOG0793|consen 975 PGMVATKDQFEFALTAVAE 993 (1004)
T ss_pred CcceeehhhhHHHHHHHHH
Confidence 9997754433 33544433
No 52
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=95.83 E-value=0.026 Score=46.29 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHHhC---CCeEEEEcCCCC--ch--HHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q psy16347 67 ADHWSQNLATYFPQAIQFIEEARSQ---DTGVLVHCLAGV--SR--SVTITVAYLMSALRLSLNDAFTLVRARKS 134 (288)
Q Consensus 67 ~D~~~~~l~~~~~~~~~fI~~~~~~---~~~vlvHC~~G~--~R--S~~l~~aylm~~~~~~~~~A~~~v~~~rp 134 (288)
.|.+.-++.+ +-+.+..+++.++. .++.+|||+..- -| ++.|+.||+|...|++.++|++-+...-|
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5666667764 66677777777765 577788877543 23 57899999999999999999999987653
No 53
>KOG4228|consensus
Probab=95.26 E-value=0.038 Score=58.17 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=53.0
Q ss_pred eeCCCCCCCHHhHHHHHHHHHHHHHhC----CCeEEEEcCCCCchHHHHHHHH----HHHhC-CCCHHHHHHHHHHhCCC
Q psy16347 65 PIADHWSQNLATYFPQAIQFIEEARSQ----DTGVLVHCLAGVSRSVTITVAY----LMSAL-RLSLNDAFTLVRARKSN 135 (288)
Q Consensus 65 pi~D~~~~~l~~~~~~~~~fI~~~~~~----~~~vlvHC~~G~~RS~~l~~ay----lm~~~-~~~~~~A~~~v~~~rp~ 135 (288)
-|.|++.+... -..++|+++...- .|+++|||.+|.|||++.++.= +|.+. ..+.-+-+..+|..|..
T Consensus 702 ~Wpd~gvPe~~---t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~ 778 (1087)
T KOG4228|consen 702 AWPDHGVPETP---TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNN 778 (1087)
T ss_pred cCCCCCCcccc---hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccc
Confidence 57777766432 3456666665543 4899999999999999865321 23333 37777778889999988
Q ss_pred CCCCHHHHH
Q psy16347 136 IAPNFHFME 144 (288)
Q Consensus 136 ~~p~~~f~~ 144 (288)
...+..+.-
T Consensus 779 mVQt~eQYi 787 (1087)
T KOG4228|consen 779 MVQTEEQYI 787 (1087)
T ss_pred ccccHHHHH
Confidence 877766543
No 54
>KOG4471|consensus
Probab=94.09 E-value=0.1 Score=51.68 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHH-HHHHHH
Q psy16347 78 FPQAIQFIEEARSQDTGVLVHCLAGVSRSVTIT-VAYLMS 116 (288)
Q Consensus 78 ~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~-~aylm~ 116 (288)
+..++...++....+..|||||.+|-.||+-++ +|-||.
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 445555566666778899999999999998766 444543
No 55
>KOG4228|consensus
Probab=93.17 E-value=0.18 Score=53.21 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=43.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH----HhCC-CCHHHHHHHHHHhCCCCCCCHHHHHHH
Q psy16347 92 DTGVLVHCLAGVSRSVTITVAYLM----SALR-LSLNDAFTLVRARKSNIAPNFHFMEQL 146 (288)
Q Consensus 92 ~~~vlvHC~~G~~RS~~l~~aylm----~~~~-~~~~~A~~~v~~~rp~~~p~~~f~~~L 146 (288)
.+++.|||.+|.+||++.+++-++ ...+ ++.-.+++.++..||.+.-...+.+.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fc 1077 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFC 1077 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHH
Confidence 589999999999999888766543 3333 788888999999999988776655444
No 56
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=90.61 E-value=0.81 Score=34.61 Aligned_cols=71 Identities=23% Similarity=0.253 Sum_probs=44.8
Q ss_pred HHHHhCCCcEEEEcCCCCCcccccCCCeE-EEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHH
Q psy16347 32 STLGTHYRDYVLNVTADLPNVFEATGSIK-YMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTIT 110 (288)
Q Consensus 32 ~~L~~~gI~~Vlnl~~~~~~~~~~~~~i~-~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~ 110 (288)
..+...+-..||++... ..+....-.. ..++|+.+........ . ..+.++++|+|..|. || ..+
T Consensus 13 ~~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~~~--~---------~~~~~~ivv~C~~G~-rS-~~a 77 (110)
T COG0607 13 ALLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAENLL--E---------LPDDDPIVVYCASGV-RS-AAA 77 (110)
T ss_pred HHhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhccc--c---------cCCCCeEEEEeCCCC-Ch-HHH
Confidence 34455567789999875 4444433344 6777777654321111 0 567899999999997 77 555
Q ss_pred HHHHHHh
Q psy16347 111 VAYLMSA 117 (288)
Q Consensus 111 ~aylm~~ 117 (288)
+.+|...
T Consensus 78 a~~L~~~ 84 (110)
T COG0607 78 AAALKLA 84 (110)
T ss_pred HHHHHHc
Confidence 5666554
No 57
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=88.65 E-value=1.7 Score=32.70 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=19.2
Q ss_pred hCCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
.++.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 4668899999988 58854 33344 445653
No 58
>KOG1089|consensus
Probab=88.16 E-value=1.1 Score=44.63 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=23.9
Q ss_pred HHHHHHHh-CCCeEEEEcCCCCchHHHHH-HHHHHH
Q psy16347 83 QFIEEARS-QDTGVLVHCLAGVSRSVTIT-VAYLMS 116 (288)
Q Consensus 83 ~fI~~~~~-~~~~vlvHC~~G~~RS~~l~-~aylm~ 116 (288)
.+|.+++. +|-.|||||.+|..||+-|+ +|=||.
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 44445555 56899999999999997766 333443
No 59
>PLN02160 thiosulfate sulfurtransferase
Probab=87.41 E-value=1.6 Score=35.27 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=40.6
Q ss_pred ChHHHHhCCCcEEEEcCCCCCcccccCCCe---EEEEEeeCCCCCC-CHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCch
Q psy16347 30 PISTLGTHYRDYVLNVTADLPNVFEATGSI---KYMQIPIADHWSQ-NLATYFPQAIQFIEEARSQDTGVLVHCLAGVSR 105 (288)
Q Consensus 30 ~~~~L~~~gI~~Vlnl~~~~~~~~~~~~~i---~~l~ipi~D~~~~-~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~R 105 (288)
++..+.+.+ ..|||+.+. ..+.. +++ ..+.+|+.+.... .+.. .+....+...+..+.+|++||..| .|
T Consensus 21 e~~~~~~~~-~~lIDVR~~--~E~~~-ghIpgA~~iniP~~~~~~~~~l~~--~~~~~~~~~~~~~~~~IivyC~sG-~R 93 (136)
T PLN02160 21 QAKTLLQSG-HQYLDVRTQ--DEFRR-GHCEAAKIVNIPYMLNTPQGRVKN--QEFLEQVSSLLNPADDILVGCQSG-AR 93 (136)
T ss_pred HHHHHHhCC-CEEEECCCH--HHHhc-CCCCCcceecccchhcCcccccCC--HHHHHHHHhccCCCCcEEEECCCc-HH
Confidence 334444445 368999863 33332 223 2356676433211 1110 111112222345678999999999 47
Q ss_pred HHHHHHHHHHHhCCCC
Q psy16347 106 SVTITVAYLMSALRLS 121 (288)
Q Consensus 106 S~~l~~aylm~~~~~~ 121 (288)
|... +..+...|.+
T Consensus 94 S~~A--a~~L~~~G~~ 107 (136)
T PLN02160 94 SLKA--TTELVAAGYK 107 (136)
T ss_pred HHHH--HHHHHHcCCC
Confidence 7543 3333555654
No 60
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=87.29 E-value=1.6 Score=41.33 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=16.9
Q ss_pred hCCCeEEEEcCCCCchHHHHHH
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITV 111 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~ 111 (288)
.+|..|||||.+|-.||+-++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 5789999999999999966553
No 61
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=83.97 E-value=3.5 Score=32.64 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=21.2
Q ss_pred HHhCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 88 ARSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 88 ~~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
.+.++.+|+|+|..|-.||..+ ++++...|.
T Consensus 82 ~i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 82 RLERDPKLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred ccCCCCeEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 3456789999998554577533 367777675
No 62
>PRK01415 hypothetical protein; Validated
Probab=80.29 E-value=6.6 Score=35.28 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=20.0
Q ss_pred hCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
.++++|+++|+.|+ || ..++++|.. .|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~~-~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RC-EKSTSLLKS-IGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HH-HHHHHHHHH-cCC
Confidence 46789999999995 77 555666644 354
No 63
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=75.83 E-value=8.1 Score=29.91 Aligned_cols=31 Identities=16% Similarity=-0.041 Sum_probs=19.9
Q ss_pred HhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 89 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
+..+..|+|+|..| +++++.++. ++...|.+
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 34578999999997 455455544 44555654
No 64
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=73.63 E-value=19 Score=26.74 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=45.3
Q ss_pred hCCCcEEEEcCCCCCcccccCCCeEEEEEeeCCC---CCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHH-
Q psy16347 36 THYRDYVLNVTADLPNVFEATGSIKYMQIPIADH---WSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITV- 111 (288)
Q Consensus 36 ~~gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~---~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~- 111 (288)
+.+=..||++.+. ..+....--.-+++|+... ........+.............+..|+++|..|. |+...+.
T Consensus 10 ~~~~~~liD~R~~--~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSP--EEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSH--HHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCH--HHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 4566788899853 3333322111477777443 2223333445555555555567788999997775 4444333
Q ss_pred --HHHHHhCCCC
Q psy16347 112 --AYLMSALRLS 121 (288)
Q Consensus 112 --aylm~~~~~~ 121 (288)
++.+...|.+
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 3445555653
No 65
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=71.81 E-value=27 Score=27.03 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=36.6
Q ss_pred CcEEEEcCCCCCcccc-cCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHh
Q psy16347 39 RDYVLNVTADLPNVFE-ATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSA 117 (288)
Q Consensus 39 I~~Vlnl~~~~~~~~~-~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~ 117 (288)
=..||++.+. ..+. ...--.-+++|+.+....... ......+........+|+|+|..|. ||... +. .+..
T Consensus 15 ~~~vIDvR~~--~e~~~~ghIpgA~~ip~~~~~~~~~~---~~~~~~l~~~~~~~~~ivv~C~~G~-rs~~a-a~-~L~~ 86 (117)
T cd01522 15 QAVLVDVRTE--AEWKFVGGVPDAVHVAWQVYPDMEIN---PNFLAELEEKVGKDRPVLLLCRSGN-RSIAA-AE-AAAQ 86 (117)
T ss_pred CeEEEECCCH--HHHhcccCCCCceecchhhccccccC---HHHHHHHHhhCCCCCeEEEEcCCCc-cHHHH-HH-HHHH
Confidence 4668999863 3344 222112355565543221111 1112223333356788999999984 77543 33 3344
Q ss_pred CCC
Q psy16347 118 LRL 120 (288)
Q Consensus 118 ~~~ 120 (288)
.|.
T Consensus 87 ~G~ 89 (117)
T cd01522 87 AGF 89 (117)
T ss_pred CCC
Confidence 554
No 66
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=71.70 E-value=13 Score=34.49 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
++++|+|||..|+ || ..+++||.. .|.+
T Consensus 170 kdk~IvvyC~~G~-Rs-~~aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RC-EKASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HH-HHHHHHHHH-cCCC
Confidence 5689999999986 77 455666654 4643
No 67
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=66.56 E-value=2.8 Score=32.80 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=28.3
Q ss_pred ceeeeeeecCccccCCCccc---cceEEEEecCCCCc----ccc------cCCCeEEEEEeeCC
Q psy16347 221 LCTSHVITRGGNQFARPSFI---ITTYVLNVTADLPN----VFE------ATGSIKYMQIPIAD 271 (288)
Q Consensus 221 ~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~~~----~~~------~~~~~~y~~i~v~D 271 (288)
+|.+.++++++-...+...| |++.|||.-.+... .+. +.-++.|.+|||.-
T Consensus 4 ~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~ 67 (110)
T PF04273_consen 4 QISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG 67 (110)
T ss_dssp EEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T
T ss_pred ecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC
Confidence 67789999998888888877 99999999754211 111 13568999999874
No 68
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=63.12 E-value=30 Score=25.57 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=19.1
Q ss_pred hCCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
..+.+|+|+|..|. || ..++..| ...|.+
T Consensus 59 ~~~~~ivv~C~~G~-rs-~~aa~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SS-QFVAELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cH-HHHHHHH-HHcCce
Confidence 46789999999995 77 3344433 455653
No 69
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=62.94 E-value=5.5 Score=32.09 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=38.7
Q ss_pred CceeeeeeecCccccCCCccc---cceEEEEecCCC-----Ccccc-----cCCCeEEEEEeeCCC
Q psy16347 220 KLCTSHVITRGGNQFARPSFI---ITTYVLNVTADL-----PNVFE-----ATGSIKYMQIPIADH 272 (288)
Q Consensus 220 ~~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~-----~~~~~-----~~~~~~y~~i~v~D~ 272 (288)
.+|.+.+|.+++-...+...| ||+.|||.-... |.... ...+++|.+||+...
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~ 68 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG 68 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC
Confidence 367889999999888888888 999999986432 21100 114789999998753
No 70
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=61.46 E-value=23 Score=26.83 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=18.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
++.+|+|||..|. || ..++ ..+...|.
T Consensus 65 ~~~~ivv~C~~G~-rs-~~a~-~~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RS-IIGA-QSLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hH-HHHH-HHHHHCCC
Confidence 4578999999996 77 3333 34455565
No 71
>PRK05320 rhodanese superfamily protein; Provisional
Probab=60.74 E-value=19 Score=32.42 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=19.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
++++|+++|..|. || ..++++|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs-~~Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RC-EKAAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HH-HHHHHHHHH-cCC
Confidence 5789999999995 77 556666654 354
No 72
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=59.88 E-value=33 Score=26.14 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=13.7
Q ss_pred CCCeEEEEcCCCCchHHHH
Q psy16347 91 QDTGVLVHCLAGVSRSVTI 109 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l 109 (288)
....|++||..|..||+..
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 3468999999865677543
No 73
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=59.48 E-value=7.8 Score=32.46 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=22.6
Q ss_pred cceEEEEecCCCCcc-cccCCCeEEEEEeeCCCC
Q psy16347 241 ITTYVLNVTADLPNV-FEATGSIKYMQIPIADHW 273 (288)
Q Consensus 241 ~it~iln~~~~~~~~-~~~~~~~~y~~i~v~D~~ 273 (288)
|||+|||+.....+. .....++.|+++|+.|..
T Consensus 40 gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~ 73 (166)
T PTZ00242 40 NVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGA 73 (166)
T ss_pred CCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCC
Confidence 999999997543221 221246899999998853
No 74
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=58.20 E-value=32 Score=32.47 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
.+.+|+|+|..|-.||..++ .++...|.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa--~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ--QWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHHH--HHHHHcCC
Confidence 57889999976656886653 44455565
No 75
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=57.98 E-value=17 Score=24.45 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHh
Q psy16347 107 VTITVAYLMSALRLSLNDAFTLVRAR 132 (288)
Q Consensus 107 ~~l~~aylm~~~~~~~~~A~~~v~~~ 132 (288)
..-+.+.||..+|++.++|+.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45567889999999999999999875
No 76
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=57.60 E-value=12 Score=34.30 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=17.5
Q ss_pred HhCCCe---EEEEcCCCCchHHHHH
Q psy16347 89 RSQDTG---VLVHCLAGVSRSVTIT 110 (288)
Q Consensus 89 ~~~~~~---vlvHC~~G~~RS~~l~ 110 (288)
.++|+. |-|=|+.|..||++++
T Consensus 236 ~~egk~~ltIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 236 EKEGKSYLTIAIGCTGGQHRSVAIA 260 (284)
T ss_pred HhcCCceEEEEEEcCCCcCcHHHHH
Confidence 345544 8899999999998877
No 77
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=56.57 E-value=32 Score=25.54 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
++.+|+++|..| .||. .++.+| ...|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~-~~~~~l-~~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSM-QVAQWL-LRQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHH-HHHHHH-HHcCCc
Confidence 478999999998 4773 333344 345654
No 78
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=56.29 E-value=25 Score=29.17 Aligned_cols=30 Identities=27% Similarity=0.207 Sum_probs=21.3
Q ss_pred hCCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
.++.+|+++|..|..||.. +++++...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4678999999998877754 45555665643
No 79
>PRK10302 hypothetical protein; Provisional
Probab=54.84 E-value=86 Score=28.57 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=38.1
Q ss_pred HHHHhCCCcEEEEcCC--------------------CCCcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhC
Q psy16347 32 STLGTHYRDYVLNVTA--------------------DLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQ 91 (288)
Q Consensus 32 ~~L~~~gI~~Vlnl~~--------------------~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~ 91 (288)
+.|+++||..|+.=.. ..|........+.|+++-=.+....+ .+.+++.++.|... .+
T Consensus 148 ~lL~~~~~~~v~~D~~~~~~~~~~~~~~~daq~~~~~~P~~~~~T~~~~yvRlhG~~~~~y~-~~~L~~wa~~i~~w-~~ 225 (272)
T PRK10302 148 RGLHQRGVNRVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVVTADNPLVRFIGSDDMAQN-LELFQVWLQKLPQW-HQ 225 (272)
T ss_pred HHHHHcCCEEEecCccccccCCCCcHHHHHHhhcCCCCCCCeecCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHH-Hh
Confidence 5899999998864332 12222222334667665322222222 33577788888776 34
Q ss_pred CCe--EEEEcCCC
Q psy16347 92 DTG--VLVHCLAG 102 (288)
Q Consensus 92 ~~~--vlvHC~~G 102 (288)
|+. |++|+.++
T Consensus 226 ~~~~yvff~n~~~ 238 (272)
T PRK10302 226 TTTPYLFIHTPDI 238 (272)
T ss_pred CCCEEEEEeCCch
Confidence 455 55666654
No 80
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=54.83 E-value=21 Score=32.40 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=17.6
Q ss_pred HhCCCe---EEEEcCCCCchHHHHH
Q psy16347 89 RSQDTG---VLVHCLAGVSRSVTIT 110 (288)
Q Consensus 89 ~~~~~~---vlvHC~~G~~RS~~l~ 110 (288)
.++|+. |.|=|+.|..||++++
T Consensus 237 ~~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 237 EKEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred HhcCCeEEEEEEccCCCccchHHHH
Confidence 345655 7799999999998876
No 81
>PRK05569 flavodoxin; Provisional
Probab=53.10 E-value=1.1e+02 Score=24.07 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=59.9
Q ss_pred HHHHhCCCc-EEEEcCCCCCcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCc-hHHHH
Q psy16347 32 STLGTHYRD-YVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVS-RSVTI 109 (288)
Q Consensus 32 ~~L~~~gI~-~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~-RS~~l 109 (288)
+.+.+.|+. .++++............ .-.+--|+........ ..+..+++.+....-+|++|.+-++.|-+ ..+.-
T Consensus 24 ~~~~~~g~~v~~~~~~~~~~~~~~~~d-~iilgsPty~~~~~~~-~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~ 101 (141)
T PRK05569 24 DGAKEAGAEVTIKHVADAKVEDVLEAD-AVAFGSPSMDNNNIEQ-EEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMK 101 (141)
T ss_pred HHHHhCCCeEEEEECCcCCHHHHhhCC-EEEEECCCcCCCcCCh-HHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHH
Confidence 344556654 45565543222332322 5566667765543211 12444444444333468899999998865 22222
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Q psy16347 110 TVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELM 154 (288)
Q Consensus 110 ~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~ 154 (288)
.+.-++...|+..-..+.. .-.|+...++++.+|.+.|.
T Consensus 102 ~~~~~l~~~g~~~~~~~~~------~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 102 LWKDRMKDYGFNVIGDLAV------NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred HHHHHHHHCCCeEeeeEEE------ccCCCHHHHHHHHHHHHHHh
Confidence 2333445556554332111 12488888888888876653
No 82
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=52.56 E-value=44 Score=31.04 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=17.8
Q ss_pred hCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
..+.+|+|+|..|-.||..+ +.++...|.
T Consensus 72 ~~~~~vvvyC~~gG~RS~~a--a~~L~~~G~ 100 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSL--AWLLAQIGF 100 (311)
T ss_pred CCCCcEEEEECCCChHHHHH--HHHHHHcCC
Confidence 34456999997554687544 344455565
No 83
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=51.36 E-value=25 Score=26.21 Aligned_cols=28 Identities=39% Similarity=0.517 Sum_probs=18.8
Q ss_pred hCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
.++.+|+|+|..|. ||. . ++.++...|.
T Consensus 64 ~~~~~ivv~c~~g~-~s~-~-~~~~l~~~G~ 91 (106)
T cd01519 64 SKDKELIFYCKAGV-RSK-A-AAELARSLGY 91 (106)
T ss_pred CCCCeEEEECCCcH-HHH-H-HHHHHHHcCC
Confidence 35678999999886 653 3 3455566665
No 84
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=50.03 E-value=1.8e+02 Score=25.51 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=40.0
Q ss_pred ChHHHHhCCCcEEEEcCCC---CCcccccC-CCeEEEEEeeCCCC-----CCCHHhHHHHHHHHHHHHHhCCCeEEEEcC
Q psy16347 30 PISTLGTHYRDYVLNVTAD---LPNVFEAT-GSIKYMQIPIADHW-----SQNLATYFPQAIQFIEEARSQDTGVLVHCL 100 (288)
Q Consensus 30 ~~~~L~~~gI~~Vlnl~~~---~~~~~~~~-~~i~~l~ipi~D~~-----~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~ 100 (288)
-.+.|+++|+.+|+.-... .+...... .++.|+++-=.... ..+ .+.+++..+.|....++++.|+|-..
T Consensus 134 ~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys-~~eL~~~a~~i~~~~~~~~~v~v~fn 212 (230)
T PF01904_consen 134 VFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYS-DEELEEWAERIRAWAAQGKEVYVFFN 212 (230)
T ss_dssp HHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB-----HHHHHHHHHHHHHHHTCSSEEEEEE-
T ss_pred HHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCC-HHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4678999999999988776 44333222 25778876333322 112 24589999999999888888776554
Q ss_pred C
Q psy16347 101 A 101 (288)
Q Consensus 101 ~ 101 (288)
.
T Consensus 213 N 213 (230)
T PF01904_consen 213 N 213 (230)
T ss_dssp S
T ss_pred C
Confidence 4
No 85
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=47.89 E-value=36 Score=27.44 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCC
Q psy16347 78 FPQAIQFIEEARSQDTGVLVHCLA 101 (288)
Q Consensus 78 ~~~~~~fI~~~~~~~~~vlvHC~~ 101 (288)
..-+++.++++.++|.+|+|+|.+
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 467889999999999999999965
No 86
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=47.79 E-value=29 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
++.+|+++|..|. ||. .++.+| ...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~-~aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RAD-MTASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHH-HHHHHH-HHcCCE
Confidence 3578999999986 664 334444 555653
No 87
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=47.52 E-value=20 Score=32.88 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHH----HhCCCe---EEEEcCCCCchHHHHHH
Q psy16347 76 TYFPQAIQFIEEA----RSQDTG---VLVHCLAGVSRSVTITV 111 (288)
Q Consensus 76 ~~~~~~~~fI~~~----~~~~~~---vlvHC~~G~~RS~~l~~ 111 (288)
+.+..+.++++.. .++|+. |-|-|+.|..||++++-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 3445555554433 344543 78999999999988763
No 88
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=44.07 E-value=37 Score=27.61 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcCC
Q psy16347 77 YFPQAIQFIEEARSQDTGVLVHCLA 101 (288)
Q Consensus 77 ~~~~~~~fI~~~~~~~~~vlvHC~~ 101 (288)
...-++++++++.++|.+|+|+|.+
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4677889999999999999999954
No 89
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=43.86 E-value=28 Score=28.62 Aligned_cols=23 Identities=26% Similarity=0.370 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCC
Q psy16347 79 PQAIQFIEEARSQDTGVLVHCLA 101 (288)
Q Consensus 79 ~~~~~fI~~~~~~~~~vlvHC~~ 101 (288)
.-++.+++++...|.+|+|+|.+
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCC
Confidence 37889999999999999999954
No 90
>PRK07411 hypothetical protein; Validated
Probab=43.42 E-value=38 Score=32.38 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=18.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
++.+|+|||..|. ||. .++ ..+...|.+
T Consensus 341 ~d~~IVvyC~~G~-RS~-~aa-~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSA-KAL-GILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHH-HHH-HHHHHcCCC
Confidence 4689999999886 773 343 344555654
No 91
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=42.58 E-value=64 Score=23.31 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=18.3
Q ss_pred HhCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 89 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
+..+.+|+|+|..|. || ..+ +..+...|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s-~~a-~~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SS-AQL-AQALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hH-HHH-HHHHHHcCC
Confidence 356789999999775 44 333 344455554
No 92
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=42.17 E-value=72 Score=27.50 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHH
Q psy16347 75 ATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITV 111 (288)
Q Consensus 75 ~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~ 111 (288)
.+.+.++++.+.+++.++++|++. |.|+|++++.
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~ 57 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQ 57 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHH
Confidence 356888999999999999999987 8888866553
No 93
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=41.61 E-value=99 Score=24.11 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=24.1
Q ss_pred hHHHHhCCCcEEEEcCCCCC------------cccccCCCeEEEEEee
Q psy16347 31 ISTLGTHYRDYVLNVTADLP------------NVFEATGSIKYMQIPI 66 (288)
Q Consensus 31 ~~~L~~~gI~~Vlnl~~~~~------------~~~~~~~~i~~l~ipi 66 (288)
++.|++.||+.||++..... ...... ||.|.+++-
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~-gi~Y~~~~~ 52 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEA-GIEYVWLPE 52 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHC-CceEeechh
Confidence 35789999999999865321 122233 599999865
No 94
>smart00400 ZnF_CHCC zinc finger.
Probab=41.40 E-value=31 Score=23.06 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=23.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16347 96 LVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLV 129 (288)
Q Consensus 96 lvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v 129 (288)
..||.+ -++.+- ++.++|..+|+++.||++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 467764 234443 46778888899999999876
No 95
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.02 E-value=27 Score=26.33 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=13.8
Q ss_pred CCeEEEEcCCCCchHHHHH
Q psy16347 92 DTGVLVHCLAGVSRSVTIT 110 (288)
Q Consensus 92 ~~~vlvHC~~G~~RS~~l~ 110 (288)
..+||+-|.+|.+ |+.++
T Consensus 3 ~~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLV 20 (95)
T ss_pred ccEEEEECCCchh-HHHHH
Confidence 3689999999998 54443
No 96
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=39.62 E-value=54 Score=27.77 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=24.1
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHH
Q psy16347 74 LATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSV 107 (288)
Q Consensus 74 l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~ 107 (288)
+.+.+.++.+.|-+++..|+|||++ |-|+|+
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSa 53 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSA 53 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcch
Confidence 4456888888999999999999886 555563
No 97
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=38.71 E-value=49 Score=27.45 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcCC
Q psy16347 77 YFPQAIQFIEEARSQDTGVLVHCLA 101 (288)
Q Consensus 77 ~~~~~~~fI~~~~~~~~~vlvHC~~ 101 (288)
.+.-++++++++..+|.+|+|+|.+
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d 38 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTAD 38 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4678899999999999999999955
No 98
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=38.71 E-value=51 Score=24.07 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=18.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
...+|+|+|..|...++..++ ..+...|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa-~~L~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAA-RRLSELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHH-HHHHHcCc
Confidence 367899999998644344444 34444454
No 99
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=38.61 E-value=1e+02 Score=23.34 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCCCCcccCCCcceeccC
Q psy16347 119 RLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEARLQQQEAADKCDSCGRPKSSASDPCTACVVTSAG 190 (288)
Q Consensus 119 ~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~ 190 (288)
++++.+++..+...+ ....+..|....+.|+..+.... ..| -+||+|+.+.++
T Consensus 18 plt~~ei~~~~~~~~-----~~~v~~~L~hiak~lkr~g~~Ll-----------v~P---a~CkkCGfef~~ 70 (97)
T COG3357 18 PLTVAEIFELLNGEK-----EKEVYDHLEHIAKSLKRKGKRLL-----------VRP---ARCKKCGFEFRD 70 (97)
T ss_pred cchHHHHHHHHcCCc-----hHHHHHHHHHHHHHHHhCCceEE-----------ecC---hhhcccCccccc
Confidence 577777777766542 23345567777777766553322 112 268888777444
No 100
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=36.76 E-value=39 Score=24.83 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=19.0
Q ss_pred HhCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 89 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
+..+.+|+|+|..| .||.. ++.++...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 45678999999887 46633 3445555553
No 101
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=36.54 E-value=39 Score=24.73 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.9
Q ss_pred CeEEEEcCCCCchH
Q psy16347 93 TGVLVHCLAGVSRS 106 (288)
Q Consensus 93 ~~vlvHC~~G~~RS 106 (288)
++|++.|..|+|=|
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 47999999999855
No 102
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.85 E-value=27 Score=31.36 Aligned_cols=74 Identities=15% Similarity=0.278 Sum_probs=39.8
Q ss_pred cccC-CCCCChHHHHhCCCcEEEEcCCCCCc--------ccccCCCeEEEEE--eeCCCC-CCCH--HhHHHHHHHHHHH
Q psy16347 22 IAKI-NRGGPISTLGTHYRDYVLNVTADLPN--------VFEATGSIKYMQI--PIADHW-SQNL--ATYFPQAIQFIEE 87 (288)
Q Consensus 22 ig~~-~~~~~~~~L~~~gI~~Vlnl~~~~~~--------~~~~~~~i~~l~i--pi~D~~-~~~l--~~~~~~~~~fI~~ 87 (288)
+|.. ....-.+++++++|+.|||.++.... ..... ++.|+++ |-.... ..+. ...+.++++.+.+
T Consensus 49 ~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~-~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~ 127 (249)
T PF02571_consen 49 VGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACREL-GIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKE 127 (249)
T ss_pred ECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhc-CcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhh
Confidence 4444 34444577889999999999986322 12223 4778877 222211 1222 2235555555532
Q ss_pred HHhCCCeEEEE
Q psy16347 88 ARSQDTGVLVH 98 (288)
Q Consensus 88 ~~~~~~~vlvH 98 (288)
. .+++||.=
T Consensus 128 ~--~~~~iflt 136 (249)
T PF02571_consen 128 L--GGGRIFLT 136 (249)
T ss_pred c--CCCCEEEe
Confidence 2 22667663
No 103
>cd07322 PriL_PriS_Eukaryotic Eukaryotic core primase: Large subunit, PriL. Primases synthesize the RNA primers required for DNA replication. Primases are grouped into two classes, bacteria/bacteriophage and archaeal/eukaryotic. The proteins in the two classes differ in structure and the replication apparatus components. Archaeal/eukaryotic core primase is a heterodimeric enzyme consisting of a small catalytic subunit (PriS) and a large subunit (PriL). In eukaryotic organisms, a heterotetrameric enzyme formed by DNA polymerase alpha, the B subunit and two primase subunits has primase activity. Although the catalytic activity resides within PriS, the PriL subunit is essential for primase function as disruption of the PriL gene in yeast is lethal. PriL is composed of two structural domains. Several functions have been proposed for PriL such as stabilization of the PriS, involvement in synthesis initiation, improvement of primase processivity, determination of product size and transfer of
Probab=35.81 E-value=74 Score=30.56 Aligned_cols=109 Identities=15% Similarity=0.261 Sum_probs=58.0
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHHH
Q psy16347 75 ATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQL-NSFEKEL 153 (288)
Q Consensus 75 ~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L-~~~e~~l 153 (288)
.+.|+-+++-+...++++.. |=| .+-+.++.+++.-|++++||+.+.+..-......+.|-++. -.++...
T Consensus 221 ~~~fP~Cm~~l~~~l~~~~h-L~h-------~gR~ql~lFLk~iGl~~~e~l~~~~~~ftk~~~~~~f~k~~~Y~irH~y 292 (390)
T cd07322 221 KKSFPLCMRQLHEALRKNHH-LKH-------GGRLQLGLFLKGIGLSLEEALKFWRSEFTKKMDADKFDKEYAYNIRHNY 292 (390)
T ss_pred hhcCCHHHHHHHHHHhcCCC-CCc-------hhHHHHHHHHHhCCCCHHHHHHHHHHhhcccCCcchhhhhhHhhhhhhc
Confidence 34677788888888777533 222 34567777888889999999999988622211123333221 1222333
Q ss_pred HHhhhhhhhhhccCCCCCCCCCCCcccCCCcceeccCC
Q psy16347 154 MEARLQQQEAADKCDSCGRPKSSASDPCTACVVTSAGS 191 (288)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~ 191 (288)
..++.+.....+.|.......+.-...|+.|...-|+.
T Consensus 293 G~eG~~~~Y~p~sC~~i~~~~~p~~g~~HGCPfr~~~~ 330 (390)
T cd07322 293 GKEGKRANYTPYSCSKIISQNPPGPGDCHGCPFRHFDS 330 (390)
T ss_pred cccCCCCCCCCCCHHHHHcCCCCCCCCcCCCCCCCCCH
Confidence 33333333444444432221111134677775554433
No 104
>PRK13938 phosphoheptose isomerase; Provisional
Probab=35.48 E-value=1.1e+02 Score=26.42 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=29.4
Q ss_pred CHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHH
Q psy16347 73 NLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAY 113 (288)
Q Consensus 73 ~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~ay 113 (288)
.+.+.+.++.+.+.+.+.+|++|++. |.|+|+.++...
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~f 63 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHF 63 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHH
Confidence 45567888888888899999999987 888886665433
No 105
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=35.05 E-value=3.1e+02 Score=23.94 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=57.9
Q ss_pred hHHHHhCCCcEEEEcCCCCC-----c-------ccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEE
Q psy16347 31 ISTLGTHYRDYVLNVTADLP-----N-------VFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVH 98 (288)
Q Consensus 31 ~~~L~~~gI~~Vlnl~~~~~-----~-------~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvH 98 (288)
++.+++.|+...+++..... . ...+.| ...+. +.|....-..+.+.+.++.+.+.... .++-+|
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~--l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H 196 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEIS--LKDTVGLATPEEVAELVKALREALPD-VPLGLH 196 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEE--echhcCCcCHHHHHHHHHHHHHhCCC-CeEEEE
Confidence 45678999999999843211 1 111223 44444 55655444444577777777776654 678888
Q ss_pred cCCCCchHHHHHHHHHHH---------------hCCCCHHHHHHHHHHhC
Q psy16347 99 CLAGVSRSVTITVAYLMS---------------ALRLSLNDAFTLVRARK 133 (288)
Q Consensus 99 C~~G~~RS~~l~~aylm~---------------~~~~~~~~A~~~v~~~r 133 (288)
|+.-.|=..+-+++.+.. ..+.+.++.+..++.+.
T Consensus 197 ~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 197 THNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcC
Confidence 887655444333333321 11257777777787764
No 106
>KOG1530|consensus
Probab=34.18 E-value=74 Score=25.83 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=37.2
Q ss_pred hHHHHhCCCcEEEEcCCCCCcccccCCCeEEEEEeeCCCCCCCHH--hHHHHHHHHHHHHHh-CCCeEEEEcCCCCchHH
Q psy16347 31 ISTLGTHYRDYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLA--TYFPQAIQFIEEARS-QDTGVLVHCLAGVSRSV 107 (288)
Q Consensus 31 ~~~L~~~gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~--~~~~~~~~fI~~~~~-~~~~vlvHC~~G~~RS~ 107 (288)
...|.+.+=...|++.+ |+++...+--.-++||..-.+.+-.+ +.|.+-+. .... ....++++|..|. ||.
T Consensus 30 vk~L~~~~~~~llDVRe--peEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg---~~kp~~d~eiIf~C~SG~-Rs~ 103 (136)
T KOG1530|consen 30 VKNLLQHPDVVLLDVRE--PEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVG---SSKPPHDKEIIFGCASGV-RSL 103 (136)
T ss_pred HHHHhcCCCEEEEeecC--HHHhhccCCcceEeccccccccccccCCHHHHHHhc---ccCCCCCCcEEEEeccCc-chh
Confidence 44555556577788874 34444443234566666433322111 11222222 2222 2347999999997 773
No 107
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=33.28 E-value=65 Score=23.80 Aligned_cols=26 Identities=4% Similarity=0.032 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 92 DTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 92 ~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
+..|+|+|..|. ||..+ +..+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 578999999986 66433 334455564
No 108
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=33.26 E-value=1.1e+02 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHH
Q psy16347 75 ATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTIT 110 (288)
Q Consensus 75 ~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~ 110 (288)
.+.+.++++.|.+++.+|++|++. |.|.|..++
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 356999999999999999999886 676675543
No 109
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=33.07 E-value=59 Score=23.76 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=18.3
Q ss_pred hCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
..+.+|+|+|..| .||.. ++.+| ...|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4567899999877 47744 34444 55564
No 110
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=31.98 E-value=57 Score=25.47 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=17.0
Q ss_pred HhCCCeEEEEcC-CCCchHHHHHHHHHHH
Q psy16347 89 RSQDTGVLVHCL-AGVSRSVTITVAYLMS 116 (288)
Q Consensus 89 ~~~~~~vlvHC~-~G~~RS~~l~~aylm~ 116 (288)
+.+...|++||. .| .||+. ++.+|..
T Consensus 65 ~~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 65 KKKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred cCCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 346788999997 66 57744 4445544
No 111
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.48 E-value=2e+02 Score=24.96 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHh
Q psy16347 84 FIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEA 156 (288)
Q Consensus 84 fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~~ 156 (288)
.|+...+.... ++.|.+|++--++.-.+=++.. -.+-+.+.++++-...+-..|..-|...|+.+...
T Consensus 151 vI~~l~e~~e~-~fy~GDsvsDlsaaklsDllFA----K~~L~nyc~eqn~~f~~fe~F~eIlk~iekvl~~~ 218 (220)
T COG4359 151 VIHELSEPNES-IFYCGDSVSDLSAAKLSDLLFA----KDDLLNYCREQNLNFLEFETFYEILKEIEKVLEVQ 218 (220)
T ss_pred hHHHhhcCCce-EEEecCCcccccHhhhhhhHhh----HHHHHHHHHHcCCCCcccccHHHHHHHHHHHHhhh
Confidence 35555555444 8999999976544433334443 23778899998888889999999999999887643
No 112
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=31.45 E-value=1.8e+02 Score=23.26 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=36.7
Q ss_pred eEEEEEeeCCCCCCCH-HhHHHHHHHHHHHHHhCCCe-EEEEcCCCCchHHHHHHHHHHHhCC
Q psy16347 59 IKYMQIPIADHWSQNL-ATYFPQAIQFIEEARSQDTG-VLVHCLAGVSRSVTITVAYLMSALR 119 (288)
Q Consensus 59 i~~l~ipi~D~~~~~l-~~~~~~~~~fI~~~~~~~~~-vlvHC~~G~~RS~~l~~aylm~~~~ 119 (288)
+.-+.+|+.|-..+.- ...++.+.+.|.+..++++. .+.-|-+|-=.+-++.++|.+.-+|
T Consensus 54 i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 54 VHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 4445556666655433 33455555556666666552 3444556655778888888887776
No 113
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=31.30 E-value=13 Score=31.05 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=30.8
Q ss_pred ceeeeeeecCccccCCCccc---cceEEEEecCCCCcc----cccCCCeEEEEEeeCCCCC
Q psy16347 221 LCTSHVITRGGNQFARPSFI---ITTYVLNVTADLPNV----FEATGSIKYMQIPIADHWS 274 (288)
Q Consensus 221 ~i~~~lylg~~~~a~~~~~l---~it~iln~~~~~~~~----~~~~~~~~y~~i~v~D~~~ 274 (288)
.|-|.||=|++-.+.|-..| ||+.|||.+.+.+.. |.+..++++.++++..+..
T Consensus 9 ~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~ 69 (164)
T PF03162_consen 9 MVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKD 69 (164)
T ss_dssp EEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------G
T ss_pred CCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccC
Confidence 67789999999999998888 999999999774332 3344678999998876543
No 114
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=30.92 E-value=2.1e+02 Score=20.98 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCCchH--HHHHHHH-HHHhCCCCHHHHHHHHHHhCCC
Q psy16347 101 AGVSRS--VTITVAY-LMSALRLSLNDAFTLVRARKSN 135 (288)
Q Consensus 101 ~G~~RS--~~l~~ay-lm~~~~~~~~~A~~~v~~~rp~ 135 (288)
.|+++. ..+--|| +++..+.++++|++.+++..+.
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~ 63 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPD 63 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC
Confidence 456555 3455677 5666789999999999997644
No 115
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=30.28 E-value=52 Score=28.45 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHh
Q psy16347 110 TVAYLMSALRLSLNDAFTLVRAR 132 (288)
Q Consensus 110 ~~aylm~~~~~~~~~A~~~v~~~ 132 (288)
+=+.||..+|++-+||++++|+.
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 45679999999999999999864
No 116
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=29.83 E-value=1.1e+02 Score=27.41 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHH------HHHhCCCCHHHHHHHHHH
Q psy16347 77 YFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAY------LMSALRLSLNDAFTLVRA 131 (288)
Q Consensus 77 ~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~ay------lm~~~~~~~~~A~~~v~~ 131 (288)
+..-..++++-+.+.+.+|.|||........-++-.| ++..+.-+.+.|-.+++.
T Consensus 112 Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 112 QQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 4555566777777789999999987555443333332 222334466666666653
No 117
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=29.77 E-value=1.5e+02 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=16.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
.+.+|+++|..|. ||.. ++..| ...|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~-aa~~L-~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGM-AKDIL-LDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHH-HHHHH-HHcCC
Confidence 4568999999995 6643 33333 34454
No 118
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=29.32 E-value=35 Score=31.90 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=36.4
Q ss_pred CCChHHHHhCCCcEEEEcCCCC---------------CcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHH
Q psy16347 28 GGPISTLGTHYRDYVLNVTADL---------------PNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEAR 89 (288)
Q Consensus 28 ~~~~~~L~~~gI~~Vlnl~~~~---------------~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~ 89 (288)
..-++.|.+.|+++|+-++... ...+...|+.+|.++|....... ++..+.+.+.+.+
T Consensus 246 ~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~----fi~~la~lv~~~~ 318 (320)
T COG0276 246 DDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPE----FIDALADLVRELL 318 (320)
T ss_pred HHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHH----HHHHHHHHHHHHh
Confidence 4456777788999999886521 12344556699999998755432 4455555555443
No 119
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=29.29 E-value=59 Score=24.54 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=23.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Q psy16347 96 LVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRAR 132 (288)
Q Consensus 96 lvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~ 132 (288)
..||.+ -+.++- ++.++|...++++.||++.+.+.
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHH
Confidence 688874 455544 46778999999999999999875
No 120
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=28.94 E-value=72 Score=24.64 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred hCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 90 SQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
..+++|+|+|..|. ||. .++. .+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~-~aa~-~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQ-TAVR-KLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHH-HHHH-HHHHcCC
Confidence 55788999999995 774 3333 3455565
No 121
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=28.71 E-value=1e+02 Score=29.32 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=11.2
Q ss_pred HhCCCeEEEEcCCC
Q psy16347 89 RSQDTGVLVHCLAG 102 (288)
Q Consensus 89 ~~~~~~vlvHC~~G 102 (288)
+..|..||.||..|
T Consensus 164 I~dg~~ILThcnsg 177 (363)
T PRK05772 164 LNDGDTVLTQCNAG 177 (363)
T ss_pred cCCCCEEEEecCCc
Confidence 34578899999887
No 122
>PHA02540 61 DNA primase; Provisional
Probab=28.70 E-value=1.8e+02 Score=27.41 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=28.9
Q ss_pred eEEEEcC-CCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q psy16347 94 GVLVHCL-AGVSRSVTITVAYLMSALRLSLNDAFTLVRARK 133 (288)
Q Consensus 94 ~vlvHC~-~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~r 133 (288)
....||. -|.+.. ++.+||...++++.||+..+.+..
T Consensus 53 ~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 53 GGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred ceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 6789996 355544 678999999999999998666554
No 123
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=28.69 E-value=33 Score=26.14 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=8.7
Q ss_pred CeEEEEcCCC
Q psy16347 93 TGVLVHCLAG 102 (288)
Q Consensus 93 ~~vlvHC~~G 102 (288)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6899999876
No 124
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=28.67 E-value=50 Score=23.89 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=11.3
Q ss_pred eEEEEcCCCCchH
Q psy16347 94 GVLVHCLAGVSRS 106 (288)
Q Consensus 94 ~vlvHC~~G~~RS 106 (288)
+|++-|.+|++-|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 6899999999755
No 125
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=27.99 E-value=1.2e+02 Score=23.22 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=16.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 91 QDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 91 ~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
.+.+|+++|..| .||.. ++..| ...|.
T Consensus 59 ~~~~IVlyC~~G-~rS~~-aa~~L-~~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQ-AKEIL-SEMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHHHH-HHHHH-HHcCC
Confidence 456799999988 35543 33333 33453
No 126
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.92 E-value=1.1e+02 Score=28.84 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=14.1
Q ss_pred HhCCCeEEEEcCCCCchH
Q psy16347 89 RSQDTGVLVHCLAGVSRS 106 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~RS 106 (288)
+..|..||-||..|..++
T Consensus 145 I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred ccCCCEEEEecCCccccc
Confidence 346788999999997654
No 127
>KOG0235|consensus
Probab=27.89 E-value=1.8e+02 Score=25.58 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=33.4
Q ss_pred CCHHhHHHHHHHHHHHHH----hCCCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHH
Q psy16347 72 QNLATYFPQAIQFIEEAR----SQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTL 128 (288)
Q Consensus 72 ~~l~~~~~~~~~fI~~~~----~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~ 128 (288)
+.+...+..++.|.++.+ .+|..|+|+|+... .=+++|...|++.++....
T Consensus 132 EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~~i~~~ 186 (214)
T KOG0235|consen 132 ESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDEAIKEL 186 (214)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHhhhhhe
Confidence 345555666666665444 46889999997632 3346777778887776544
No 128
>PLN02449 ferrochelatase
Probab=27.39 E-value=49 Score=32.76 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=37.7
Q ss_pred CCChHHHHhCCCcEEEEcCCCC---------------CcccccCCCeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhC
Q psy16347 28 GGPISTLGTHYRDYVLNVTADL---------------PNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQ 91 (288)
Q Consensus 28 ~~~~~~L~~~gI~~Vlnl~~~~---------------~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~ 91 (288)
..-++.|.+.|+++|+-+.... .+.+.+.|.-+|.++|..+.... +++...+.+.+.+..
T Consensus 341 ~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~p~----FI~~La~lV~~~l~~ 415 (485)
T PLN02449 341 DETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCEPT----FISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCCHH----HHHHHHHHHHHHhhc
Confidence 3456788899999998875421 12234445337999998765433 455556666666654
No 129
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=27.24 E-value=2.6e+02 Score=25.91 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=29.4
Q ss_pred CCCCHHhHHHHHHHHHHHHHh--CCCeEEEEcCCCCchHHHHHHHHHHH
Q psy16347 70 WSQNLATYFPQAIQFIEEARS--QDTGVLVHCLAGVSRSVTITVAYLMS 116 (288)
Q Consensus 70 ~~~~l~~~~~~~~~fI~~~~~--~~~~vlvHC~~G~~RS~~l~~aylm~ 116 (288)
-.+++. .|++.-.++.+..+ ++++|...|+.|+ |. =-+.+||..
T Consensus 149 v~p~~~-tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~~ 194 (308)
T COG1054 149 VEPDIE-TFREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMKE 194 (308)
T ss_pred cCCChh-hhhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHHH
Confidence 344444 47777777776554 4679999999998 65 444555544
No 130
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=26.18 E-value=79 Score=23.15 Aligned_cols=17 Identities=24% Similarity=0.667 Sum_probs=13.1
Q ss_pred hCCCeEEEEcCCCCchHH
Q psy16347 90 SQDTGVLVHCLAGVSRSV 107 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~ 107 (288)
..+.+|+++|..|. ||.
T Consensus 52 ~~~~~iv~~c~~g~-~s~ 68 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQ 68 (99)
T ss_pred CCCCcEEEEeCCCc-hHH
Confidence 45689999999985 553
No 131
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.92 E-value=1.4e+02 Score=23.80 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHH
Q psy16347 76 TYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTI 109 (288)
Q Consensus 76 ~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l 109 (288)
+.+.++.+.+.+.+.+|++|++. |-|-|+++
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~ 49 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVC---GNGHSAAI 49 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---ESTHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---cCchhhhH
Confidence 45888999999999998887776 44556444
No 132
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=25.14 E-value=1.4e+02 Score=27.97 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.0
Q ss_pred HhCCC----eEEEEcCCC
Q psy16347 89 RSQDT----GVLVHCLAG 102 (288)
Q Consensus 89 ~~~~~----~vlvHC~~G 102 (288)
+..|. .||.||..|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34567 899999987
No 133
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=25.05 E-value=93 Score=23.94 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.8
Q ss_pred CCeEEEEcCCCCchH
Q psy16347 92 DTGVLVHCLAGVSRS 106 (288)
Q Consensus 92 ~~~vlvHC~~G~~RS 106 (288)
..+||+-|.+|.|-|
T Consensus 3 ~kkIllvC~~G~sTS 17 (106)
T PRK10499 3 KKHIYLFCSAGMSTS 17 (106)
T ss_pred CCEEEEECCCCccHH
Confidence 368999999999866
No 134
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=25.03 E-value=1.8e+02 Score=21.64 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=18.7
Q ss_pred HhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 89 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
+..+..++|+|..|. ||.. + +-.+...|.+
T Consensus 55 ~~~~~~ivv~c~~g~-~s~~-a-~~~L~~~G~~ 84 (108)
T PRK00162 55 ADFDTPVMVMCYHGN-SSQG-A-AQYLLQQGFD 84 (108)
T ss_pred cCCCCCEEEEeCCCC-CHHH-H-HHHHHHCCch
Confidence 356788999999986 5532 2 2344555643
No 135
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.51 E-value=52 Score=29.39 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHhCCCcEEEEcCCCCCcccccCCCeEEEEEeeCCCCC--------------------CCHHhHHHHHHHHHHHHHhCC
Q psy16347 33 TLGTHYRDYVLNVTADLPNVFEATGSIKYMQIPIADHWS--------------------QNLATYFPQAIQFIEEARSQD 92 (288)
Q Consensus 33 ~L~~~gI~~Vlnl~~~~~~~~~~~~~i~~l~ipi~D~~~--------------------~~l~~~~~~~~~fI~~~~~~~ 92 (288)
..++.||.-+.+.-......+...-++.++.|+=.|... ..+. .+.++++++.+... .
T Consensus 64 ~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~-EI~~Av~~~~~~~~-~ 141 (241)
T PF03102_consen 64 YCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLE-EIERAVEVLREAGN-E 141 (241)
T ss_dssp HHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HH-HHHHHHHHHHHHCT--
T ss_pred HHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHH-HHHHHHHHHHhcCC-C
Confidence 445677777776654322222211124455554444332 2333 47788888844433 3
Q ss_pred CeEEEEcCCCCc
Q psy16347 93 TGVLVHCLAGVS 104 (288)
Q Consensus 93 ~~vlvHC~~G~~ 104 (288)
.-+|.||..+|-
T Consensus 142 ~l~llHC~s~YP 153 (241)
T PF03102_consen 142 DLVLLHCVSSYP 153 (241)
T ss_dssp -EEEEEE-SSSS
T ss_pred CEEEEecCCCCC
Confidence 569999999874
No 136
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=24.43 E-value=1.3e+02 Score=28.92 Aligned_cols=64 Identities=17% Similarity=0.399 Sum_probs=36.8
Q ss_pred CeEEEEEeeCCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCC
Q psy16347 58 SIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNI 136 (288)
Q Consensus 58 ~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~~~~A~~~v~~~rp~~ 136 (288)
+++|..+|+.+.+..+... +.++++ .+-+-|+|.=+-||+.-.++.+. ..+++++.+|+.+|.+
T Consensus 128 Gi~Y~~v~L~~dg~~D~~~-i~~~~~------~~tk~v~IQRSrGYs~R~sl~i~--------~I~~~i~~vk~~~p~~ 191 (403)
T PF06838_consen 128 GIKYREVPLTEDGTIDWEA-IKKALK------PNTKMVLIQRSRGYSWRPSLTIE--------EIKEIIKFVKEINPDV 191 (403)
T ss_dssp T-EEEE--B-TTSSB-HHH-HHHHHH------TTEEEEEEE-S-TTSSS----HH--------HHHHHHHHHHHH-TTS
T ss_pred CceeEEEeecCCCCcCHHH-HHHhhc------cCceEEEEecCCCCCCCCCCCHH--------HHHHHHHHHHhhCCCe
Confidence 4999999999988886654 333322 23355889988999866666554 3678899999999876
No 137
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=24.25 E-value=78 Score=28.58 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHHHHhCCCCHHHHHHH
Q psy16347 100 LAGVSRSVTITVAYLMSALRLSLNDAFTL 128 (288)
Q Consensus 100 ~~G~~RS~~l~~aylm~~~~~~~~~A~~~ 128 (288)
--|+|||++-+.+-++. |++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 36999997766665443 8889988543
No 138
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=23.99 E-value=72 Score=24.58 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=11.3
Q ss_pred CeEEEEcCCCCchH
Q psy16347 93 TGVLVHCLAGVSRS 106 (288)
Q Consensus 93 ~~vlvHC~~G~~RS 106 (288)
++||+-|.+|.|-|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 47999999999544
No 139
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=23.83 E-value=52 Score=26.85 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=17.0
Q ss_pred CCeEEEEEeeCCCCCCChhhhhHHHhcc
Q psy16347 260 GSIKYMQIPIADHWSQNLATYFPQAIQF 287 (288)
Q Consensus 260 ~~~~y~~i~v~D~~~~~l~~~f~~~~~F 287 (288)
.++.|.|||+.|. .......||.-++|
T Consensus 91 ~g~~Y~Ripitd~-~~P~~~~iD~fi~~ 117 (149)
T PF14566_consen 91 NGLRYYRIPITDH-QAPDPEDIDAFINF 117 (149)
T ss_dssp TT-EEEEEEE-TT-S---HHHHHHHHHH
T ss_pred CCceEEEEeCCCc-CCCCHHHHHHHHHH
Confidence 5689999999998 56666677766555
No 140
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=23.78 E-value=1e+02 Score=31.21 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcC---CCCc
Q psy16347 68 DHWSQNLATYFPQAIQFIEEARSQDTGVLVHCL---AGVS 104 (288)
Q Consensus 68 D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~---~G~~ 104 (288)
+...|..+..++++++.|.+++.++.+|+|+-. +|++
T Consensus 45 ~l~~P~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGit 84 (575)
T PRK11070 45 GLLPWQQLSGIEKAVELLYNALREGTRIIVVGDFDADGAT 84 (575)
T ss_pred hcCChHHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHH
Confidence 444456666799999999999999999999865 7775
No 141
>PHA03338 US22 family homolog; Provisional
Probab=23.67 E-value=74 Score=29.29 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=25.8
Q ss_pred EEcCCCCchHHHHHHHH-HHHhCCCCHHHHHHHHHHhCCC
Q psy16347 97 VHCLAGVSRSVTITVAY-LMSALRLSLNDAFTLVRARKSN 135 (288)
Q Consensus 97 vHC~~G~~RS~~l~~ay-lm~~~~~~~~~A~~~v~~~rp~ 135 (288)
|||.+|++.|+.+.--| ++...+...+....++...+-.
T Consensus 161 ihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HGe 200 (344)
T PHA03338 161 IHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHGE 200 (344)
T ss_pred eccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccCc
Confidence 79999999997666444 4555566665556666655433
No 142
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.24 E-value=2.4e+02 Score=23.20 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHH
Q psy16347 76 TYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTI 109 (288)
Q Consensus 76 ~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l 109 (288)
+.+.++++.|.+++.++++|++. |.|.|..+
T Consensus 17 ~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~ 47 (177)
T cd05006 17 EAIEQAAQLLAEALLNGGKILIC---GNGGSAAD 47 (177)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHH
Confidence 46899999999999888898877 56655443
No 143
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=23.15 E-value=1.4e+02 Score=20.92 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=18.5
Q ss_pred HhCCCeEEEEcCCCCchHHHHHHHHHHHhCCCC
Q psy16347 89 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~~ 121 (288)
...+..|+|+|..|. |+ ..+++.+...|..
T Consensus 53 ~~~~~~iv~~c~~g~-~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 53 LDKDKPVVVYCRSGN-RS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCCeEEEEeCCCc-HH--HHHHHHHHHcCCC
Confidence 345688999996654 55 3334555555644
No 144
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.10 E-value=3.3e+02 Score=20.46 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHhCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy16347 115 MSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKELMEAR 157 (288)
Q Consensus 115 m~~~~~~~~~A~~~v~~~rp~~~p~~~f~~~L~~~e~~l~~~~ 157 (288)
....|++++++-.++........+....+..|.+....+..-+
T Consensus 54 lr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (99)
T cd04765 54 LYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLDLR 96 (99)
T ss_pred HHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH
Confidence 4567999999999999988888888888888888877665443
No 145
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=22.93 E-value=3.2e+02 Score=23.39 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16347 78 FPQAIQFIEEARSQDTGVLVHCLAG-----VSRSVTITVAYLMSALRLSLNDAFTLVRA 131 (288)
Q Consensus 78 ~~~~~~fI~~~~~~~~~vlvHC~~G-----~~RS~~l~~aylm~~~~~~~~~A~~~v~~ 131 (288)
......-+...++.|.+|++-...+ .+......+..++...|++.++|++.+..
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~ 280 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATS 280 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTH
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHH
Confidence 4555666778888999999988776 55666777777888899999999887754
No 146
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=22.76 E-value=68 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=18.1
Q ss_pred HhCCCeEEEEcCCCCchHHHHHHHHHHHhCCC
Q psy16347 89 RSQDTGVLVHCLAGVSRSVTITVAYLMSALRL 120 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~~ 120 (288)
+..+++|+++|..|. |+ ++++ +++...|.
T Consensus 228 ~~~~~~ii~yC~~G~-~A-~~~~-~~l~~~G~ 256 (281)
T PRK11493 228 VSFDRPIIASCGSGV-TA-AVVV-LALATLDV 256 (281)
T ss_pred CCCCCCEEEECCcHH-HH-HHHH-HHHHHcCC
Confidence 345678999999987 45 3333 33345554
No 147
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=22.41 E-value=1.7e+02 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=14.2
Q ss_pred hCCCeEEEEcCCCCchHHHHH
Q psy16347 90 SQDTGVLVHCLAGVSRSVTIT 110 (288)
Q Consensus 90 ~~~~~vlvHC~~G~~RS~~l~ 110 (288)
....+|++||..+-.|+...+
T Consensus 60 ~~~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 60 SKKDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CCCCeEEEEeecCCcchHHHH
Confidence 345789999985546775543
No 148
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=22.23 E-value=4e+02 Score=25.28 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=44.0
Q ss_pred eeeeeeCCccccccCCcccCCCCCChHHHHhC-CCcEEEEcCCCCCc--------------ccccCCCeEEEEE---eeC
Q psy16347 6 TGRWLDTPTISSLSTPIAKINRGGPISTLGTH-YRDYVLNVTADLPN--------------VFEATGSIKYMQI---PIA 67 (288)
Q Consensus 6 ~~~Wi~~~~l~~~~~pig~~~~~~~~~~L~~~-gI~~Vlnl~~~~~~--------------~~~~~~~i~~l~i---pi~ 67 (288)
+.+|+++.. +...+..+++. |++.||....+.+. ..+..| +++-.| |+.
T Consensus 4 ~~rw~g~~~------------dpv~l~~irQ~~Gv~giV~al~~~p~g~~W~~e~i~~~k~~ie~~G-L~~~vIEsvpv~ 70 (351)
T PF03786_consen 4 TWRWFGPED------------DPVTLWDIRQQPGVTGIVTALHDIPNGEVWDYEEIRALKERIEAAG-LTLSVIESVPVH 70 (351)
T ss_dssp EEE---TTT-------------SS-HHHHCTSTTEEEEEE--SSS-TTS---HHHHHHHHHHHHCTT--EEEEEES----
T ss_pred eEeeeCCCC------------CcchHHHHHHhcCCCCeeeCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeEEEEecCChH
Confidence 456776644 66778888887 99999998764322 223334 665554 443
Q ss_pred C---CCCCCHHhHHHHHHHHHHHHHhCCCeEEEE
Q psy16347 68 D---HWSQNLATYFPQAIQFIEEARSQDTGVLVH 98 (288)
Q Consensus 68 D---~~~~~l~~~~~~~~~fI~~~~~~~~~vlvH 98 (288)
| .+.+.-.++++...++|+..-+.|-+|+-+
T Consensus 71 e~IklG~~~RD~~Ieny~~~Irnlg~~GI~vvcY 104 (351)
T PF03786_consen 71 EDIKLGLPGRDEEIENYKQTIRNLGKAGIKVVCY 104 (351)
T ss_dssp HHHHCT-TTHHHHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 233455678888999999998887776644
No 149
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=22.19 E-value=1.1e+02 Score=27.16 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=30.0
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHHHhCC-CeEEEEcC-CCCchHHHHHHHHHHH
Q psy16347 66 IADHWSQNLATYFPQAIQFIEEARSQD-TGVLVHCL-AGVSRSVTITVAYLMS 116 (288)
Q Consensus 66 i~D~~~~~l~~~~~~~~~fI~~~~~~~-~~vlvHC~-~G~~RS~~l~~aylm~ 116 (288)
++|.+.-. +++....+++-+.++| .+|+|||- +|..-++.-+..||-.
T Consensus 36 lSdGGVHS---h~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~ 85 (223)
T PF06415_consen 36 LSDGGVHS---HIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEE 85 (223)
T ss_dssp ESS-SSS-----HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHH
T ss_pred ecCCCccc---cHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHH
Confidence 56666553 3455556666677777 57999996 7887777777777643
No 150
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=22.13 E-value=1.2e+02 Score=21.09 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=17.6
Q ss_pred HhCCCeEEEEcCCCCchHHHHHHHHHHHhCC
Q psy16347 89 RSQDTGVLVHCLAGVSRSVTITVAYLMSALR 119 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~RS~~l~~aylm~~~~ 119 (288)
..++.+|+|+|..|. |+ ..+ +..+...|
T Consensus 47 ~~~~~~vv~~c~~~~-~a-~~~-~~~l~~~G 74 (89)
T cd00158 47 LDKDKPIVVYCRSGN-RS-ARA-AKLLRKAG 74 (89)
T ss_pred cCCCCeEEEEeCCCc-hH-HHH-HHHHHHhC
Confidence 356789999999973 44 333 34444445
No 151
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=21.86 E-value=64 Score=29.95 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=25.2
Q ss_pred CCChHHHHhCCCcEEEEcCCC-----------C----CcccccCCCeEEEEEeeCCCC
Q psy16347 28 GGPISTLGTHYRDYVLNVTAD-----------L----PNVFEATGSIKYMQIPIADHW 70 (288)
Q Consensus 28 ~~~~~~L~~~gI~~Vlnl~~~-----------~----~~~~~~~~~i~~l~ipi~D~~ 70 (288)
..-++.|.+.|+++|+-++.. . .+.+.+.|+-+|.++|..+..
T Consensus 244 ~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~ 301 (316)
T PF00762_consen 244 EDVLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDS 301 (316)
T ss_dssp HHHHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-
T ss_pred HHHHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCC
Confidence 345688999999999988652 1 223444553489999988554
No 152
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=21.67 E-value=1.2e+02 Score=22.90 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=18.7
Q ss_pred HhCCCeEEEEcCCCCc-hHHHHHHHHHHHhCCC
Q psy16347 89 RSQDTGVLVHCLAGVS-RSVTITVAYLMSALRL 120 (288)
Q Consensus 89 ~~~~~~vlvHC~~G~~-RS~~l~~aylm~~~~~ 120 (288)
+..+.+|+|+|..|.. || ..++ ..+...|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s-~~~a-~~l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGA-TKAA-LKLAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchH-HHHH-HHHHHcCC
Confidence 4567899999998853 44 3333 34445565
No 153
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=21.03 E-value=91 Score=31.77 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=29.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH---hCCCCHHHHHHHHHH
Q psy16347 93 TGVLVHCLAGVSRSVTITVAYLMS---ALRLSLNDAFTLVRA 131 (288)
Q Consensus 93 ~~vlvHC~~G~~RS~~l~~aylm~---~~~~~~~~A~~~v~~ 131 (288)
.+..|||.+|. ++++.++||+ ..+++.++|+..++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 67999999998 4888889864 457899999876654
No 154
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=20.70 E-value=1.9e+02 Score=28.96 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHHhCCCeEEEEcC---CCCchHHHHHHHHHHHhCCCC
Q psy16347 67 ADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCL---AGVSRSVTITVAYLMSALRLS 121 (288)
Q Consensus 67 ~D~~~~~l~~~~~~~~~fI~~~~~~~~~vlvHC~---~G~~RS~~l~~aylm~~~~~~ 121 (288)
.+...|.....+.++++.|.++++++.+|+|.+. +|+ ++++++...+...|..
T Consensus 29 ~~l~~p~~l~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi--~S~~~L~~~L~~~g~~ 84 (539)
T TIGR00644 29 IDLPDPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGI--TSTAILVEFLKDLGVN 84 (539)
T ss_pred hhcCChhhcCCHHHHHHHHHHHHhcCCeEEEEEccCCCcH--HHHHHHHHHHHHCCCc
Confidence 3444444555689999999999999999888775 555 4555555555655643
No 155
>PRK02947 hypothetical protein; Provisional
Probab=20.42 E-value=2.1e+02 Score=25.37 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHHHHh
Q psy16347 75 ATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSA 117 (288)
Q Consensus 75 ~~~~~~~~~fI~~~~~~~~~vlvHC~~G~~RS~~l~~aylm~~ 117 (288)
.+.+.++++.+.+.+.++++|++. |.|.|..+ +.++.++
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~v-A~~~~~r 61 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHIL-AEEVFYR 61 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHH-HHHhccc
Confidence 346889999999999999999987 66666444 4454444
Done!