RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16347
(288 letters)
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 158 bits (403), Expect = 5e-49
Identities = 51/111 (45%), Positives = 73/111 (65%)
Query: 40 DYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHC 99
+VLNV ++PN Y+ +PI D SQ+++ YF +A+ FI++AR + VLVHC
Sbjct: 29 THVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHC 88
Query: 100 LAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFE 150
LAGVSRS T+ +AYLM L LSL +A+ V++R+ I+PN FM QL +E
Sbjct: 89 LAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139
Score = 56.5 bits (137), Expect = 4e-10
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 243 TYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288
T+VLNV ++PN Y+ +PI D SQ+++ YF +A+ FI
Sbjct: 29 THVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFI 74
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 144 bits (365), Expect = 3e-43
Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Query: 40 DYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHC 99
+V+NVT ++PN Y+ +PI D+ ++ YFP+A++FIE+A S+ VLVHC
Sbjct: 28 THVINVTNEVPNYNG--SDFTYLGVPIDDNTETKISPYFPEAVEFIEDAESKGGKVLVHC 85
Query: 100 LAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEK 151
AGVSRS T+ +AYLM +SLNDA+ V+ R+ I+PNF F+ QL +E+
Sbjct: 86 QAGVSRSATLIIAYLMKTRNMSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137
Score = 51.9 bits (125), Expect = 2e-08
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 243 TYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288
T+V+NVT ++PN Y+ +PI D+ ++ YFP+A++FI
Sbjct: 28 THVINVTNEVPNYNG--SDFTYLGVPIDDNTETKISPYFPEAVEFI 71
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 135 bits (342), Expect = 5e-40
Identities = 48/112 (42%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 40 DYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHC 99
+V+NVT ++PN I Y+ IP+ D+ N++ Y P+A++FI++A + VLVHC
Sbjct: 20 THVINVTREVPNSN-LNSGILYLGIPVEDNHETNISKYLPEAVEFIDDAIQKGGKVLVHC 78
Query: 100 LAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEK 151
AG+SRS T+ +AYLM LSLN+A++ V+ R+ I+PNF F QL +E+
Sbjct: 79 QAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPIISPNFGFKRQLLEYER 130
Score = 49.6 bits (119), Expect = 1e-07
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 243 TYVLNVTADLPNVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFI 288
T+V+NVT ++PN I Y+ IP+ D+ N++ Y P+A++FI
Sbjct: 20 THVINVTREVPNSN-LNSGILYLGIPVEDNHETNISKYLPEAVEFI 64
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 71.3 bits (175), Expect = 4e-15
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 51 NVFEATGSIKYMQIPIADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTIT 110
E I+ + +PI D +L + + FIEEA S+ V+VHC G+ RS T+
Sbjct: 65 VAIEENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVI 123
Query: 111 VAYLMSALRLSLNDAF-TLVRARKS--NIAPNFHFMEQ 145
AYLM LSL D + R R+ + H E
Sbjct: 124 AAYLMLYGGLSLADEAIAVKRRRRPGAVVTEIQHLFEL 161
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 57.3 bits (139), Expect = 3e-09
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 24/160 (15%)
Query: 21 PIAKINRG---------GPISTLGTHYRDYVLNVTADLPNVFEATGS------IKYMQIP 65
I KI+ + L ++ +L+VTA+ F+ I Y+ IP
Sbjct: 94 AIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAE----FDGLDWSLTEEDIDYLNIP 149
Query: 66 IADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALR-LSLND 124
I DH LA QAI +I + V+VHC G RSV + AYL+ L++ +
Sbjct: 150 ILDHSVPTLAQ-LNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEE 208
Query: 125 AFTLVRARKSNIAPNFHFMEQLNSFEKELMEARLQQQEAA 164
++ + N QL + EK L + +L + A
Sbjct: 209 VLQQIKQIRKTARLNKR---QLRALEKMLEQGKLNIHKRA 245
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 35.8 bits (83), Expect = 0.005
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 87 EARSQDTGVLVHCLAGVSRSVTITVAYLM 115
V+VHC AGV R+ T ++
Sbjct: 34 NQSESSGPVVVHCSAGVGRTGTFVAIDIL 62
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 35.8 bits (83), Expect = 0.005
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 87 EARSQDTGVLVHCLAGVSRSVTITVAYLM 115
V+VHC AGV R+ T ++
Sbjct: 34 NQSESSGPVVVHCSAGVGRTGTFVAIDIL 62
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 35.3 bits (82), Expect = 0.022
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 82 IQFIEEAR-----SQDTGVLVHCLAGVSRSVT-ITVAYLMSALR 119
+ + + R ++VHC AGV R+ T I + L+ L
Sbjct: 151 LDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLE 194
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 34.6 bits (80), Expect = 0.037
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 75 ATYFPQAIQFIEEARSQDTG-VLVHCLAGVSRSVT-ITVAYLMSALR 119
I+ + +++S TG ++VHC AGV R+ T I + L+ L
Sbjct: 176 PESILDLIRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLE 222
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 33.0 bits (76), Expect = 0.13
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 82 IQFIEEARS-----QDTGVLVHCLAGVSRSVT-ITVAYLMSALR 119
+ I + R + ++VHC AGV R+ T I + L+ L
Sbjct: 153 LDLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIAIDILLQQLE 196
>gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional.
Length = 282
Score = 31.4 bits (72), Expect = 0.50
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 224 SHVITRGGNQFARPSFIITTYVLNVTADLPNV------------FEATGSIKYMQIPIAD 271
++TR GN A P++ TA P FEA SI + P
Sbjct: 61 KQLLTRQGNPIAAPAWF--------TAGFPPFPLDGELWAGRGQFEAISSIVRDKTPDDA 112
Query: 272 HWSQ 275
W +
Sbjct: 113 AWRK 116
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 30.6 bits (69), Expect = 0.62
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 82 IQFIEEARSQDTGVLVHCLAGVSRSVTITV-AYLMSALRLSLNDAFTLVRARKSNIAPNF 140
I F +E + +L+HC AG+SRS + A L A + + +RA PN
Sbjct: 84 IDFADE-WPRFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNP 142
Query: 141 HFME 144
+
Sbjct: 143 RLIA 146
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 1.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 145 QLNSFEKELMEARLQQQEAADKCDSCGRP 173
+L KEL +A + ++A KC CGR
Sbjct: 416 ELKKEIKELKKAIEELKKAKGKCPVCGRE 444
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 29.0 bits (66), Expect = 1.6
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 72 QNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVT-ITVAYLMSAL 118
++L T +E D VL HC AG R T + A L+S L
Sbjct: 103 RDLVTDAAAYRALLELLADPDGPVLFHCTAGKDR--TGVAAALLLSLL 148
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 30.0 bits (67), Expect = 1.8
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 181 CTACVVTSAGSTSYLSPLSIIGQSPDSGIEFDRWTPGTDKLCTSHVITRGGNQFARPSFI 240
C V A +++ + L IGQS + G+ WT G + + ++ R ++F R F+
Sbjct: 54 CATYFVLQASASALPNILQDIGQSENQGLFSTLWTMG--QAVSILMMGRLTDRFGRRPFV 111
Query: 241 ITTYVLNV 248
I T+++ +
Sbjct: 112 IATHIIGL 119
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 29.2 bits (66), Expect = 1.8
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 66 IADHWSQNLATYFPQAIQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDA 125
+ D+W + L F + + + VHC+AG+ R+ + L+ + DA
Sbjct: 79 VIDNWLRLLDQEFAKQS-------TPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDA 131
Query: 126 FTLVRARKSN 135
VR ++
Sbjct: 132 VGFVREKRKG 141
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 29.4 bits (67), Expect = 2.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 142 FMEQLNSFEKELMEARLQQQEAADKCDSCGRP 173
F +++ EKE+ + +++ + A + C CG P
Sbjct: 549 FEKEIEKAEKEIEKIKIKDEPAGEDCPKCGSP 580
>gnl|CDD|107277 cd06282, PBP1_GntR_like_2, Ligand-binding domain of putative DNA
transcription repressors highly similar to that of the
repressor specific for gluconate (GntR) which is a
member of the LacI-GalR family of bacterial
transcription regulators. This group includes the
ligand-binding domain of putative DNA transcription
repressors highly similar to that of the repressor
specific for gluconate (GntR) which is a member of the
LacI-GalR family of bacterial transcription regulators.
The LacI-GalR family repressors are composed of two
functional domains: an N-terminal HTH (helix-turn-helix)
domain, which is responsible for the DNA-binding
specificity, and a C-terminal ligand-binding domain,
which is homologous to the sugar-binding domain of
ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding affinity of the
repressor.
Length = 266
Score = 28.4 bits (64), Expect = 3.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 5 ATGRWLDTPTISSLSTPIAKINRGGPISTLGTHYRDYVLNVTADLPNVFEATGS 58
A GR L TP +++++ P I R + L + LP+ F A G+
Sbjct: 215 AIGRLL-TPPLATVAQPNRDIGRQA-VQRLLARIAGGAPRTSLALPHRFRAGGT 266
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 28.7 bits (64), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 95 VLVHCLAGVSRSVT-ITVAYLMSALRLSLN 123
++VHC AGV R+ T I + L+ +LN
Sbjct: 221 IIVHCSAGVGRTGTFIALDILLRMPNDTLN 250
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 28.9 bits (65), Expect = 4.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 209 IEFDRWTPGTDKLCTSHVITRGGNQFA--RPSFIITTYVLNVTAD 251
+E+ R P + L TSHV + N F+ P FI +V N +D
Sbjct: 515 VEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFI--DHVANKKSD 557
>gnl|CDD|185707 cd07896, Adenylation_kDNA_ligase_like, Adenylation domain of kDNA
ligases and similar proteins. The mitochondrial DNA of
parasitic protozoans is highly unusual. It is termed the
kinetoplast DNA (kDNA) and consists of circular DNA
molecules (maxicircles) and several thousand smaller
circular molecules (minicircles). This group is composed
of kDNA ligase, Chlorella virus DNA ligase, and similar
proteins. kDNA ligase and Chlorella virus DNA ligase are
the smallest known ATP-dependent ligases. They are
involved in DNA replication or repair. ATP-dependent
polynucleotide ligases catalyze phosphodiester bond
formation using nicked nucleic acid substrates with the
high energy nucleotide of ATP as a cofactor in a three
step reaction mechanism. They have a highly modular
architecture consisting of a unique arrangement of two
or more discrete domains. The adenylation and the
C-terminal oligonucleotide/oligosaccharide binding
(OB)-fold domains comprise a catalytic core unit that is
common to most members of the ATP-dependent DNA ligase
family, including this group. The adenylation domain
binds ATP and contains many of the active-site residues.
Length = 174
Score = 27.9 bits (63), Expect = 4.2
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 20/61 (32%)
Query: 227 ITRGGNQFARPSFIITTYVLNVTADLPNV------------FEATGSIKYMQIPIADHWS 274
++R G A P++ TA LP FE T SI + P + W
Sbjct: 37 LSRSGKPIAAPAWF--------TAGLPPFPLDGELWIGRGQFEQTSSIVRSKKPDDEDWR 88
Query: 275 Q 275
+
Sbjct: 89 K 89
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 28.7 bits (65), Expect = 4.8
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 141 HFMEQLNSFEKELMEARLQQQEAADKCDSCG 171
F+ L E+++ ++ Q+E + C CG
Sbjct: 562 PFISNLEKVEEDVRTEKVTQEETDETCPKCG 592
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional.
Length = 765
Score = 27.7 bits (62), Expect = 8.3
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 101 AGVSR-SVTITVAYLMSALRLSLNDAFTLVRARKSNIAPNFHFMEQLNSFEKE 152
AGV+ SVT ++ ++ ++ D ++ A+ +N+ + ++ LN +E+
Sbjct: 433 AGVADQSVT-----VLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEA 480
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 27.7 bits (62), Expect = 9.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 82 IQFIEEARSQDTGVLVHCLAGVSRSVTITVAYLMSALRLSLNDAFTLVRARKSNIAPN 139
I+ +E+ + D +LVH GVS TI Y AFT + +I+PN
Sbjct: 273 IKKVEDNTAADVEILVHLAPGVSPDKTIDALY-----------AFT---DCEVSISPN 316
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.132 0.400
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,328,403
Number of extensions: 1300116
Number of successful extensions: 1084
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 31
Length of query: 288
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 192
Effective length of database: 6,679,618
Effective search space: 1282486656
Effective search space used: 1282486656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)