BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16349
(351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99N96|RM01_MOUSE 39S ribosomal protein L1, mitochondrial OS=Mus musculus GN=Mrpl1
PE=1 SV=2
Length = 336
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 14/233 (6%)
Query: 81 PEDDIYLQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMD 140
PEDD+YL++ Y RI++ ++A+ +++ N P+ G ++++ K K ++
Sbjct: 87 PEDDVYLKRLYPRRIYEVEKAIHLLKKFQVLDFTN-PKQ--GVYLDLTLDMALGKKKTVE 143
Query: 141 PWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTF 200
P+ ++ + H F E + F + ++ G A G +D +K I V +
Sbjct: 144 PFASVIALPHLFS-SEVNKVAVFTANASEIKIAEENGAAFAGGTDLVKKIMDDEVVV--- 199
Query: 201 QFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDF 260
F + P+I+ +L +R LKKR P ++G D+ + + +T + + D + Q+F
Sbjct: 200 DFYVAVPEIMGELNPLRKKLKKRFPKATRNSIGRDIPKMLELFKTA--HEIMVDEERQNF 257
Query: 261 GYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPS 313
+ I LDM +Q+ NL+ ++ ++ +P + F+ R L S S
Sbjct: 258 LSTK--IATLDMPSDQIAANLQAVINEVCKHRPLNL---GPFVVRAFLRSSTS 305
>sp|Q9BYD6|RM01_HUMAN 39S ribosomal protein L1, mitochondrial OS=Homo sapiens GN=MRPL1
PE=1 SV=2
Length = 325
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 111/233 (47%), Gaps = 14/233 (6%)
Query: 81 PEDDIYLQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMD 140
PEDD+YL++ Y +I++ ++A+ +++ + P+ + + + +KK ++
Sbjct: 82 PEDDVYLKRLYPRQIYEVEKAVHLLKK-FQILDFTSPKQSVYLDLTLDMALGKKK--NVE 138
Query: 141 PWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTF 200
P+T ++ + + F E + F ++ G A G + I+ I +
Sbjct: 139 PFTSVLSLPYPF-ASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVA--- 194
Query: 201 QFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDF 260
F + P+I+ +L R+R L K+ P L ++G D+ + + + G + +K D + ++F
Sbjct: 195 DFYVAVPEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNG--HEIKVDEERENF 252
Query: 261 GYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPS 313
+ I LDMS +Q+ NL+ ++ ++ +P + F+ R L S S
Sbjct: 253 LQT--KIATLDMSSDQIAANLQAVINEVCRHRPLNL---GPFVVRAFLRSSTS 300
>sp|A6QPQ5|RM01_BOVIN 39S ribosomal protein L1, mitochondrial OS=Bos taurus GN=MRPL1 PE=1
SV=1
Length = 325
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 117/247 (47%), Gaps = 15/247 (6%)
Query: 81 PEDDIYLQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMD 140
PEDD+YL++ Y +I++ ++A+ +++ N P+ G ++++ K K ++
Sbjct: 82 PEDDVYLKRLYPRQIYEVEKAVNLLKKFQVLDFTN-PKQ--GVYLDLTLDMTLGKKKKVE 138
Query: 141 PWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTF 200
P+ ++ + + F E + F ++ G A G ++ I+ I +
Sbjct: 139 PFASVLSLPYPF-ISEMSKVAVFTGNASEIKIAEENGAAFAGGTNLIQKILDDEIQA--- 194
Query: 201 QFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDF 260
F I P+I+ +L +R LK R P ++G D+ + + +TG++ +K D + ++F
Sbjct: 195 DFYIAVPEIMPELNPLRKKLKTRFPKFNRNSVGRDIPKMLELFKTGLE--IKVDEERENF 252
Query: 261 GYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLD 320
+ I LDM +Q+ NL+ ++ ++ +P + F+ R L S S E L
Sbjct: 253 --LETKIATLDMPSDQIAANLQAVINEVCRQRPLNL---GPFVVRAFLRSSTS-EGLLLK 306
Query: 321 LSGLIEK 327
+ L+ K
Sbjct: 307 IEPLLPK 313
>sp|B3ETZ3|RL1_AMOA5 50S ribosomal protein L1 OS=Amoebophilus asiaticus (strain 5a2)
GN=rplA PE=3 SV=1
Length = 232
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 13/144 (9%)
Query: 155 GEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLM 214
G+++ I+ C+ E + ++ G VG D IK IE G V + +I P+I+A +
Sbjct: 70 GKNKRILVLCTP-EKEKEAREAGADHVGLDDYIKKIEEGWVDI---DVIITMPEIMAKVG 125
Query: 215 RIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDFHIGRLD 271
R+ +L R +P K+ T+ V++ + +++G I+Y + K +G +GR+
Sbjct: 126 RLGKILGPRGLMPNPKTGTVTVEIAKAVQAVKSGKIEYKVDK------YGIVHASVGRVS 179
Query: 272 MSQEQLEDNLKRILADISTMKPPS 295
S+E L DN K +LA + KP S
Sbjct: 180 FSKEALRDNAKELLATLLKAKPAS 203
>sp|B0BSE7|RL1_ACTPJ 50S ribosomal protein L1 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=rplA PE=3 SV=1
Length = 229
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R+ +A +Q E A + G LVG D + I++G F VI +P D
Sbjct: 67 HGTGRTARVAVFTQGENAEAAKAPGADLVGMEDLAEQIKKG---EKNFDVVIPSP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFH 266
MR+ G L + IP LK T+ +++ K ++G + P+ G
Sbjct: 120 AMRVVGQLGQVLGPRGLIPNLKVGTVTPNVVEAVKNAKSG-----QIRPRNAKNGIIHTT 174
Query: 267 IGRLDMSQEQLEDNLKRILADISTMKP 293
IG+ D + EQL+DNL +LA ++ KP
Sbjct: 175 IGKADFAPEQLKDNLVALLAALNKAKP 201
>sp|C5CGE2|RL1_KOSOT 50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=rplA PE=3 SV=1
Length = 231
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 14/179 (7%)
Query: 151 SFDHGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKI 209
S HG +++ + ++ E + + G VG + I+ I++G F I P +
Sbjct: 64 SLPHGTGKNVKVLVFTRGEKVEEAKAAGADFVGSDELIQQIQKGWTD---FDVAIATPDM 120
Query: 210 LADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHI 267
+ ++ R+ +L R +P+ K+ T+ D+ K + G + +K D G F I
Sbjct: 121 MREIGRLGRILGPRGLMPSPKAGTVTTDVAEAVKAFKAG-RVEIKNDKT----GNLHFPI 175
Query: 268 GRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSGLIE 326
G+ E+L++NL L IS MKP + FI ++++ P KLD ++E
Sbjct: 176 GKKSFDSEKLKENLVSALEQISKMKPAA--AKGRFIVKVVVAPTMGP-GIKLDHQKVVE 231
>sp|Q2GJ65|RL1_ANAPZ 50S ribosomal protein L1 OS=Anaplasma phagocytophilum (strain HZ)
GN=rplA PE=3 SV=1
Length = 216
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 161 IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLL 220
+A ++ E A Q +D G +VGDSD I+ I++G F + I P ++ + I +L
Sbjct: 62 VAVLAKGEYAKQAKDAGADVVGDSDLIEEIKKG--RKLDFDWCIATPDFMSQVSAIAKIL 119
Query: 221 KKR--IPTLKSQTLGVD---LIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQE 275
R +P K T+ D ++GI K Q +++ K +G IG + S+E
Sbjct: 120 GPRGLMPNPKFGTVTFDIAKMVGIVKSGQ--VRFRSDK------YGIVHVKIGDVGFSRE 171
Query: 276 QLEDNLKRILADISTMKPPS 295
L +NL+ +++ + +KP +
Sbjct: 172 DLMENLRAVVSAVQGLKPAT 191
>sp|Q1WST3|RL1_LACS1 50S ribosomal protein L1 OS=Lactobacillus salivarius (strain
UCC118) GN=rplA PE=3 SV=1
Length = 230
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 155 GEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLM 214
G+D++++ F ++ A + +D G +VGD D + I+ G + F I P ++A +
Sbjct: 71 GKDQTVVVF-AKGAKAQEAKDAGADVVGDDDLVARIQDGWL---DFDVAIATPDMMAQVG 126
Query: 215 RIRGLL--KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDFHIGRLD 271
R+ +L K +P K+ T+ +D+ ++G + Y +D G +G++
Sbjct: 127 RLGRVLGPKGLMPNPKTGTVTMDVTKAVTDAKSGQVTYRTDRD------GNVHVPLGKVS 180
Query: 272 MSQEQLEDNLKRILADISTMKPPS 295
++E LE N K + I+ +P S
Sbjct: 181 FTEEALEGNFKAVYDVIAKARPAS 204
>sp|P78035|RL1_MYCPN 50S ribosomal protein L1 OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=rplA PE=3 SV=1
Length = 226
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 92 KLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHS 151
K +++ QEA+ +++T T +N I ++ + TT +++++ + H V
Sbjct: 17 KTKLYPLQEAVDLVKKTSI-TKFN-GSVDIAVSLNLDTTKAEQQLRGAIAFPHSV----- 69
Query: 152 FDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILA 211
G+ I+A + A + G VG D I I+ G + F +I +PK +A
Sbjct: 70 ---GKPIRILAITDDEKAALE---AGADFVGGIDKINDIKNGWLD---FDLIITSPKFMA 120
Query: 212 DLMRIRGLL--KKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGR 269
L ++ LL K +P K++T+ D+ + + G KK+ + FG +GR
Sbjct: 121 ALGKLGKLLGTKGLMPNPKTETVTDDVPAAVRAYKKG-----KKEYRADSFGNIHMSLGR 175
Query: 270 LDMSQEQLEDNLKRILADISTMKPPS 295
+D + L +N +L I + KP +
Sbjct: 176 VDSASNHLVENALALLDLIKSRKPAT 201
>sp|A2BNZ8|RL1_PROMS 50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601)
GN=rplA PE=3 SV=1
Length = 235
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 23/203 (11%)
Query: 94 RIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFD 153
RI+ EAL+ I+E + A I ++ T Q + + P
Sbjct: 18 RIYAPLEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVVLP------------ 65
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG +SI IA + E ++ + G L G+ D ++ I +G + F +I P ++
Sbjct: 66 HGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVESINKGNME---FDLLIATPDMMPK 122
Query: 213 LMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRL 270
+ ++ +L R +P K+ T+ D+ K + G K + D G G+
Sbjct: 123 VAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAG-KLEFRADKA----GIVHVRFGKA 177
Query: 271 DMSQEQLEDNLKRILADISTMKP 293
++E L DNLK + I KP
Sbjct: 178 SFTKEALFDNLKTLQESIDKNKP 200
>sp|Q31CX8|RL1_PROM9 50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT
9312) GN=rplA PE=3 SV=1
Length = 235
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 94 RIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFD 153
RI+ EAL+ I+E + A I ++ T Q + P
Sbjct: 18 RIYPPLEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALP------------ 65
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG +SI IA + E ++ + G L G+ D ++ I +G + F +I P ++
Sbjct: 66 HGTGQSIKIAVITSGENVSKAKSAGADLFGEEDLVESINKGNMD---FDLLIATPDMMPK 122
Query: 213 LMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRL 270
+ ++ +L R +P K+ T+ D+ K + G K + D G G+
Sbjct: 123 VAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAG-KLEFRADKA----GIVHVRFGKA 177
Query: 271 DMSQEQLEDNLKRILADISTMKP 293
++E L DNLK + I KP
Sbjct: 178 SFTKEALFDNLKTLQESIDKNKP 200
>sp|A3PAS1|RL1_PROM0 50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT
9301) GN=rplA PE=3 SV=1
Length = 235
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 94 RIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFD 153
RI+ EAL+ I+E + A I ++ T Q + P
Sbjct: 18 RIYAPLEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALP------------ 65
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG +SI IA + E ++ + G L G+ D ++ I +G + F +I P ++
Sbjct: 66 HGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVESINKGNME---FDLLIATPDMMPK 122
Query: 213 LMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRL 270
+ ++ +L R +P K+ T+ D+ K + G K + D G G+
Sbjct: 123 VAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAG-KLEFRADKA----GIVHVRFGKA 177
Query: 271 DMSQEQLEDNLKRILADISTMKP 293
++E L DNLK + I KP
Sbjct: 178 SFTKEALFDNLKTLQESIDKNKP 200
>sp|A7I3U2|RL1_CAMHC 50S ribosomal protein L1 OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplA PE=3
SV=1
Length = 233
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 23/205 (11%)
Query: 94 RIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFD 153
+I+ EA+ ++ L A TVEIS + KY D +V
Sbjct: 19 KIYNINEAVETVKT--------LASAKFDETVEISLKLNVDP-KYAD---QMVRGSVVLP 66
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
G + + +A ++ A + ++ G +VG + I+ I++G + F +I P ++
Sbjct: 67 AGTGKKVRVAVIAKDAKADEAKNAGADIVGSEELIEEIQKGNIN---FDVLIATPNLMGL 123
Query: 213 LMRIRGLL--KKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRL 270
+ ++ +L K +P K+ T+ +D+ K ++G + + + D Q G + IG++
Sbjct: 124 VGKVGRILGPKGIMPNPKTDTVTMDITNAVKNAKSG-QVNFRVDKQ----GNINAGIGKV 178
Query: 271 DMSQEQLEDNLKRILADISTMKPPS 295
S+EQ+ +NL + +I+ KP +
Sbjct: 179 SFSKEQICNNLTTFIKEINKHKPAT 203
>sp|Q11QA2|RL1_CYTH3 50S ribosomal protein L1 OS=Cytophaga hutchinsonii (strain ATCC
33406 / NCIMB 9469) GN=rplA PE=3 SV=1
Length = 232
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 15/172 (8%)
Query: 145 IVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVI 204
IV + H G+D ++ C+ + A +D G VG D I+ IE G + + +I
Sbjct: 62 IVTLPHG--TGKDVRVLVLCTP-DKAQDAKDAGADHVGLDDYIQKIEGGWLDI---DVII 115
Query: 205 CNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGY 262
P ++A + ++ +L R +P K+ T+ +D+ K ++ G K D + FG
Sbjct: 116 TMPTVMAKVGKLGKILGPRNLMPNPKAGTVTLDVAKAVKDVKAG-----KIDFKVDKFGI 170
Query: 263 SDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSP 314
+G++ S E + +N +L ++ +KP S ++ I L S SP
Sbjct: 171 VHTSVGKVSFSPEMILENANEVLQVLAKLKPAS--AKGTYVRSITLSSTMSP 220
>sp|B7GNJ5|RL1_BIFLS 50S ribosomal protein L1 OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=rplA PE=3 SV=1
Length = 230
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 144 HIVEVEHSFDHGEDRS--IIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQ 201
+V + HG ++ ++ F ++ A + + G +VGD D I ++ G + F
Sbjct: 57 QLVRGTVNLPHGTGKTAKVLVF-ARGPKATEATEAGADIVGDDDLIAKVQGGFLD---FD 112
Query: 202 FVICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQ 258
V+ P ++ + R+ +L R +P K+ T+ +D+ K ++ G I++ + K+
Sbjct: 113 AVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKN---- 168
Query: 259 DFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPS 295
G F IG++ + L++N K + ++ +KP +
Sbjct: 169 --GNLSFLIGKMSFDESALDENFKAVADEVKRLKPAT 203
>sp|Q8G4T3|RL1_BIFLO 50S ribosomal protein L1 OS=Bifidobacterium longum (strain NCC
2705) GN=rplA PE=3 SV=1
Length = 230
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 144 HIVEVEHSFDHGEDRS--IIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQ 201
+V + HG ++ ++ F + A + + G +VGD D I ++ G + F
Sbjct: 57 QLVRGTVNLPHGTGKTAKVLVFA-RGPKATEATEAGADIVGDDDLIAKVQGGFLD---FD 112
Query: 202 FVICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQ 258
V+ P ++ + R+ +L R +P K+ T+ +D+ K ++ G I++ + K+
Sbjct: 113 AVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKN---- 168
Query: 259 DFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKP 293
G F IG++ + L++N K + ++ +KP
Sbjct: 169 --GNLSFLIGKMSFDESALDENFKAVADEVKRLKP 201
>sp|B3DPT0|RL1_BIFLD 50S ribosomal protein L1 OS=Bifidobacterium longum (strain DJO10A)
GN=rplA PE=3 SV=1
Length = 230
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 144 HIVEVEHSFDHGEDRS--IIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQ 201
+V + HG ++ ++ F + A + + G +VGD D I ++ G + F
Sbjct: 57 QLVRGTVNLPHGTGKTAKVLVFA-RGPKATEATEAGADIVGDDDLIAKVQGGFLD---FD 112
Query: 202 FVICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQ 258
V+ P ++ + R+ +L R +P K+ T+ +D+ K ++ G I++ + K+
Sbjct: 113 AVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKN---- 168
Query: 259 DFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKP 293
G F IG++ + L++N K + ++ +KP
Sbjct: 169 --GNLSFLIGKMSFDESALDENFKAVADEVKRLKP 201
>sp|B0UUZ5|RL1_HAES2 50S ribosomal protein L1 OS=Haemophilus somnus (strain 2336)
GN=rplA PE=3 SV=1
Length = 229
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG RS+ +A +Q + G LVG D + I++G + F VI +P D
Sbjct: 67 HGTGRSVRVAVFTQGANVDSAKAAGADLVGMEDLAEQIKKGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K ++G I+Y K+ G
Sbjct: 120 AMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ + S EQL++NL+ +LA ++ KP +
Sbjct: 174 TIGKANFSAEQLKENLQALLAALTKAKPAT 203
>sp|Q0I0V1|RL1_HAES1 50S ribosomal protein L1 OS=Haemophilus somnus (strain 129Pt)
GN=rplA PE=3 SV=1
Length = 229
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG RS+ +A +Q + G LVG D + I++G + F VI +P D
Sbjct: 67 HGTGRSVRVAVFTQGANVDAAKAAGADLVGMEDLAEQIKKGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K ++G I+Y K+ G
Sbjct: 120 AMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ + S EQL++NL+ +LA ++ KP +
Sbjct: 174 TIGKANFSAEQLKENLQALLAALTKAKPAT 203
>sp|Q7NK78|RL1_GLOVI 50S ribosomal protein L1 OS=Gloeobacter violaceus (strain PCC 7421)
GN=rplA PE=3 SV=1
Length = 238
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
G ++I IA ++ E + + G + G + I+ I+ G + F +I P I+
Sbjct: 67 RGTGKAIRIAVLAKGEKVREAEKAGADIAGSEELIERIQGGFME---FDLMIATPDIMPQ 123
Query: 213 LMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRL 270
+ R+ LL R +P+ K T+ +DL+G + + G K + D G G++
Sbjct: 124 VARLGKLLGPRGLMPSPKGGTVTMDLVGAIREFKAG-KLEFRAD----RTGIVHIPFGKV 178
Query: 271 DMSQEQLEDNLKRILADISTMKP 293
+ E L DNLK + I KP
Sbjct: 179 SFTPEALMDNLKSVQDAIDRAKP 201
>sp|P47328|RL1_MYCGE 50S ribosomal protein L1 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=rplA PE=3 SV=1
Length = 226
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 23/206 (11%)
Query: 92 KLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHS 151
K +++ QEA I++T + I ++ + TT +++++ +
Sbjct: 17 KNKLYPIQEAFELIKKTAITKFVS--SVDIAVSLNLDTTKAEQQLRG--------AIAFP 66
Query: 152 FDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILA 211
F G+ I+A + A++ G VG D I+ I+ G + F +I +PK +
Sbjct: 67 FSIGKSIRILAITDDEKKASE---AGADFVGGLDKIEAIKNGWLD---FDLIITSPKFMG 120
Query: 212 DLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGR 269
L ++ LL R +P K++T+ D++ K + G KK+ + FG +G+
Sbjct: 121 ALGKLGKLLGTRGLMPNPKTETVTDDVVSAIKAYKKG-----KKEYRTDSFGNIHLSLGK 175
Query: 270 LDMSQEQLEDNLKRILADISTMKPPS 295
D E L N ++ I + +P +
Sbjct: 176 TDTKTEHLVANAMALIDLIKSKRPST 201
>sp|A6Q1M0|RL1_NITSB 50S ribosomal protein L1 OS=Nitratiruptor sp. (strain SB155-2)
GN=rplA PE=3 SV=1
Length = 235
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 29/215 (13%)
Query: 87 LQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDP--WTH 144
L+K K +I+ EA+ ++E L A TVE++ +DP
Sbjct: 13 LEKIEKGKIYSIDEAVKKVKE--------LKSAKFDETVELALRLG------VDPRHADQ 58
Query: 145 IVEVEHSFDHGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFV 203
+V HG +++ +A ++ A + ++ G +VG D ++ I+ G + F
Sbjct: 59 MVRGSVVLPHGTGKTVRVAVFAKGAKADEAKECGADIVGAEDLVEQIQNGNID---FDIA 115
Query: 204 ICNPKILADLMRIRGLL--KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDF 260
I P ++ + +I +L K +P K+ T+ +D+ K + G + + + K
Sbjct: 116 IATPDMMGLVGKIGRILGPKGLMPNPKTGTVTMDVCQAVKNAKAGQVNFRVDKK------ 169
Query: 261 GYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPS 295
G IG+ S+E L++NL+ +A I+ +KP +
Sbjct: 170 GNIHAGIGKASFSEEALKENLETFVAQINKLKPAA 204
>sp|A5GPD4|RL1_SYNPW 50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803)
GN=rplA PE=3 SV=1
Length = 235
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 151 SFDHGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKI 209
+ HG +++ IA ++ E A+ + G L GD D ++ I +G + F +I P +
Sbjct: 63 ALPHGTGQTVRIAVITRGEKVAEAKAAGAELAGDEDLVETISKGEMD---FDLLIATPDM 119
Query: 210 LADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHI 267
+ + ++ +L R +P K+ T+ DL + G K + D G
Sbjct: 120 MPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAINEFKAG-KLEFRADRT----GIVHVRF 174
Query: 268 GRLDMSQEQLEDNLKRILADISTMKP 293
G+ S+ L DNLK + I KP
Sbjct: 175 GKASFSEGNLLDNLKTLQETIDRNKP 200
>sp|P44342|RL1_HAEIN 50S ribosomal protein L1 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rplA PE=3 SV=2
Length = 229
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R + +A +Q A ++ G LVG D + I++G + F VI +P D
Sbjct: 67 HGTGREVRVAVFTQGANADAAKEAGADLVGMEDLAEQIKKGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K ++G I+Y K+ G
Sbjct: 120 AMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ + S+ QL++NL+ +LA ++ KP +
Sbjct: 174 TIGKANFSEVQLKENLQALLAALNKAKPTT 203
>sp|A5UH21|RL1_HAEIG 50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittGG)
GN=rplA PE=3 SV=1
Length = 229
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R + +A +Q A ++ G LVG D + I++G + F VI +P D
Sbjct: 67 HGTGREVRVAVFTQGANADAAKEAGADLVGMEDLAEQIKKGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K ++G I+Y K+ G
Sbjct: 120 AMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ + S+ QL++NL+ +LA ++ KP +
Sbjct: 174 TIGKANFSEVQLKENLQALLAALNKAKPTT 203
>sp|Q4QN32|RL1_HAEI8 50S ribosomal protein L1 OS=Haemophilus influenzae (strain
86-028NP) GN=rplA PE=3 SV=1
Length = 229
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R + +A +Q A ++ G LVG D + I++G + F VI +P D
Sbjct: 67 HGTGREVRVAVFTQGANADAAKEAGADLVGMEDLAEQIKKGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K ++G I+Y K+ G
Sbjct: 120 AMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ + S+ QL++NL+ +LA ++ KP +
Sbjct: 174 TIGKANFSEVQLKENLQALLAALNKAKPTT 203
>sp|B8DVU7|RL1_BIFA0 50S ribosomal protein L1 OS=Bifidobacterium animalis subsp. lactis
(strain AD011) GN=rplA PE=3 SV=1
Length = 229
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 103/249 (41%), Gaps = 42/249 (16%)
Query: 69 ASRKVDESNLTYPEDDIYLQKDYKLRIFQFQEAL-AAIRETHHPTMYNLPRAFIGATVEI 127
A+ ++D +NL PE+ I L K + + F + + A +R P + + +V +
Sbjct: 11 AAERIDRNNLYTPEEAIALLK--SMPAYNFDQTVEAVLRLNVDPRKAD---QLVRGSVNL 65
Query: 128 STTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTI 187
T G+ ++ F + A + + G +VGD D +
Sbjct: 66 PNGT-----------------------GKTAKVLVFA-RGPKATEALEAGADIVGDDDLV 101
Query: 188 KGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQT 245
+ + G + F V+ P ++ + R+ +L R +P K+ T+ +D+ K ++
Sbjct: 102 EKVANGFLD---FDSVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAIKDIKG 158
Query: 246 GIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITR 305
G K D + G F G+L S E L+ N + + ++ +KP + +IT+
Sbjct: 159 G-----KVDFRVDKNGNLSFLFGKLSFSAEALDQNFRAVADEVKRLKPAT--VKGRYITK 211
Query: 306 ILLWSEPSP 314
+ S +P
Sbjct: 212 ATISSTMNP 220
>sp|Q7MGR5|RL1_VIBVY 50S ribosomal protein L1 OS=Vibrio vulnificus (strain YJ016)
GN=rplA PE=3 SV=1
Length = 233
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R I +A +Q A ++ G +VG D + +++G + F V+ +P D
Sbjct: 67 HGTGRDIRVAVFAQGANAEAAKEAGADIVGMEDLAEQVKKGEMN---FDVVVASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K + G ++Y K+ G
Sbjct: 120 AMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG++D S EQ+++NL+ +L + KP S
Sbjct: 174 TIGKVDFSAEQIKENLEALLVALKKAKPSS 203
>sp|Q8DD23|RL1_VIBVU 50S ribosomal protein L1 OS=Vibrio vulnificus (strain CMCP6)
GN=rplA PE=3 SV=1
Length = 233
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R I +A +Q A ++ G +VG D + +++G + F V+ +P D
Sbjct: 67 HGTGRDIRVAVFAQGANAEAAKEAGADIVGMEDLAEQVKKGEMN---FDVVVASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K + G ++Y K+ G
Sbjct: 120 AMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG++D S EQ+++NL+ +L + KP S
Sbjct: 174 TIGKVDFSAEQIKENLEALLVALKKAKPSS 203
>sp|A8G2L0|RL1_PROM2 50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT
9215) GN=rplA PE=3 SV=1
Length = 235
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 94 RIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFD 153
RI+ EAL+ I+E + A I ++ T Q + P
Sbjct: 18 RIYAPLEALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALP------------ 65
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG +SI IA + E ++ + G L G+ D ++ I +G + F +I P ++
Sbjct: 66 HGTGQSIRIAVITSGENVSKAKSAGADLFGEEDLVESINKGNME---FDLLIATPDMMPK 122
Query: 213 LMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRL 270
+ ++ +L R +P K+ T+ D+ K + G K + D G G+
Sbjct: 123 VAKLGRVLGPRGLMPNPKAGTVTNDIGNAIKEFKAG-KLEFRADKA----GIVHVRFGKA 177
Query: 271 DMSQEQLEDNLKRILADISTMKP 293
++E L +NLK + I KP
Sbjct: 178 SFTKEALFENLKTLQESIDKNKP 200
>sp|Q6NJG9|RL1_CORDI 50S ribosomal protein L1 OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=rplA PE=3
SV=1
Length = 235
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 144 HIVEVEHSFDHGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQF 202
+V S +G +S+ +A ++ E A + Q G +VG ++ I+ I G + F
Sbjct: 57 QLVRGTVSLPNGTGKSVRVAVFAEGEKATEAQAAGADIVGTTELIEQITAGTIE---FDV 113
Query: 203 VICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDF 260
I P +A + R+ +L R +P K+ T+ D+ ++ G K S + D
Sbjct: 114 AIATPDQMAKVGRVARVLGPRGLMPNPKTGTVTNDVAKAIAEVKGG-KISFRVDKA---- 168
Query: 261 GYSDFH--IGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSP 314
S+ H IG+ E+L +N +L +I+ +KP S ++ ++ L S P
Sbjct: 169 --SNLHAIIGKASFDAEKLAENYGALLDEINRIKPSS--AKGIYVKKVTLTSTFGP 220
>sp|B8E0K2|RL1_DICTD 50S ribosomal protein L1 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rplA PE=3 SV=1
Length = 242
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 152 FDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILA 211
+ G+++ ++ F ++ E A + ++ G VG D +K IE G + F I P I+
Sbjct: 67 YGTGKEKKVLVF-AEGEKAQEAREAGADYVGGEDLVKQIESGWLD---FDVAIATPDIMG 122
Query: 212 DL---MRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFH 266
L R+ +L R +P K+ T+ D+ K + G + + D +G
Sbjct: 123 TLKIPSRLGKILGPRGLMPNPKTGTVTNDIAKAVKEYKAG-RVEFRTD----RYGIVHVP 177
Query: 267 IGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ S+E L NL +L + +KP +
Sbjct: 178 IGKASFSEEALYKNLMTVLGTLLRLKPAA 206
>sp|B5YEX9|RL1_DICT6 50S ribosomal protein L1 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplA PE=3 SV=1
Length = 242
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 152 FDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILA 211
+ G+++ ++ F ++ E A + ++ G VG D +K IE G + F I P I+
Sbjct: 67 YGTGKEKKVLVF-AEGEKAQEAREAGADYVGGEDLVKQIESGWLD---FDVAIATPDIMG 122
Query: 212 DL---MRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFH 266
L R+ +L R +P K+ T+ D+ K + G + + D +G
Sbjct: 123 TLKIPSRLGKILGPRGLMPNPKTGTVTNDIAKAVKEYKAG-RVEFRTD----RYGIVHVP 177
Query: 267 IGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ S+E L NL +L + +KP +
Sbjct: 178 IGKASFSEEALYKNLMTVLGTLLRLKPAA 206
>sp|A1WVD2|RL1_HALHL 50S ribosomal protein L1 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rplA PE=3 SV=1
Length = 231
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 144 HIVEVEHSFDHGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQF 202
IV +G +S+ +A +Q E A Q G VG D + ++ G + +
Sbjct: 57 QIVRGSTVLPNGTGKSMRVAVFAQGENADAAQAEGADAVGMDDLAERMQGGELD---YDV 113
Query: 203 VICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQD 259
VI +P + + ++ +L R +P K+ T+ D+ G + + G ++Y +
Sbjct: 114 VIASPDAMGVVGKLGPVLGPRGLMPNPKTGTVSADVAGAVRNAKAGQVRYRTDRG----- 168
Query: 260 FGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPS 295
G IGR + ++ L +NL +LAD++ +KP +
Sbjct: 169 -GVIHSAIGRANFDEQALRENLDALLADLNKLKPST 203
>sp|B0SSI7|RL1_LEPBP 50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=rplA PE=3 SV=1
Length = 230
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 22/182 (12%)
Query: 123 ATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSI--IAFCSQHETAAQLQDMGVAL 180
T+EIST + K ++ V S HG ++I + FC + + + ++ G
Sbjct: 39 GTLEISTKINYKSLQN-------VRGTISLPHGTGKTIKVLVFC-KGDKQNEAREAGADF 90
Query: 181 VGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIG 238
VGD D I+ + G F + P ++ ++ ++ +L ++ +P K+ T+ D+
Sbjct: 91 VGDMDLIEKVSGGWTD---FDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSK 147
Query: 239 IAKRLQTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKP 297
K L+ G I+Y K G +G+ S ++L DN+ ++A + KP
Sbjct: 148 AVKELKAGRIEYRPDKG------GVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAK 201
Query: 298 ED 299
D
Sbjct: 202 GD 203
>sp|B0SAG4|RL1_LEPBA 50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=rplA PE=3 SV=1
Length = 230
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 22/182 (12%)
Query: 123 ATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSI--IAFCSQHETAAQLQDMGVAL 180
T+EIST + K ++ V S HG ++I + FC + + + ++ G
Sbjct: 39 GTLEISTKINYKSLQN-------VRGTISLPHGTGKTIKVLVFC-KGDKQNEAREAGADF 90
Query: 181 VGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIG 238
VGD D I+ + G F + P ++ ++ ++ +L ++ +P K+ T+ D+
Sbjct: 91 VGDMDLIEKVSGGWTD---FDACVATPDMMKEVGKLGPVLGRKGLMPKPKAGTVTTDVSK 147
Query: 239 IAKRLQTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKP 297
K L+ G I+Y K G +G+ S ++L DN+ ++A + KP
Sbjct: 148 AVKELKAGRIEYRPDKG------GVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAK 201
Query: 298 ED 299
D
Sbjct: 202 GD 203
>sp|A0ZZZ6|RL1_BIFAA 50S ribosomal protein L1 OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=rplA
PE=3 SV=1
Length = 230
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 155 GEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLM 214
G+ ++ F ++ A + + G +VGD D ++ + G + F V+ P ++ +
Sbjct: 70 GKTAKVLVF-ARGPKATEALEAGADIVGDDDLVQKVADGFLD---FDSVVATPDMMGKVG 125
Query: 215 RIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDM 272
R+ +L R +P K+ T+ +D+ K ++ G K D + G F IG++
Sbjct: 126 RLGRVLGPRGLMPNPKTGTVTMDVTKAIKDIKGG-----KVDFRVDKNGNLSFLIGKMSF 180
Query: 273 SQEQLEDNLKRILADISTMKP 293
+++ L++N K + ++ +KP
Sbjct: 181 TEQALDENFKAVADEVKRLKP 201
>sp|C6C176|RL1_DESAD 50S ribosomal protein L1 OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplA PE=3
SV=1
Length = 234
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 155 GEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLM 214
G++ + F S E A+ ++ G VG D + ++ G + F I P ++A +
Sbjct: 69 GKEIRVACFVS-GEKEAEAKEAGADFVGGDDLVAKVKDGWLD---FDKAIATPDMMAKVG 124
Query: 215 RIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDFHIGRLD 271
+I +L R +P K+ T+ D+ K ++ G +++ + K G IG++
Sbjct: 125 QIGRVLGPRGLMPNAKTGTVTFDVASAVKEVKAGRVEFKVDKA------GVLHAPIGKVS 178
Query: 272 MSQEQLEDNLKRILADISTMKPPS 295
E+L +NLK +L ++ +KP S
Sbjct: 179 FGAEKLLENLKSLLETVNKLKPSS 202
>sp|Q47UV6|RL1_COLP3 50S ribosomal protein L1 OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=rplA PE=3 SV=1
Length = 232
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
+G R + +A +Q E A + + G +VG D ++ G + F VI +P D
Sbjct: 67 NGTGREVRVAVFTQGENAEKAKAAGADIVGMEDLAAQVKAGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ D+ G K ++G I+Y K+ G
Sbjct: 120 AMRVVGQLGQILGPRGLMPNPKVGTVTPDVAGAVKNAKSGQIRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ D QL++NL+ +L + KP +
Sbjct: 174 TIGKADFEPAQLQENLESLLEALKKAKPAN 203
>sp|Q46HH0|RL1_PROMT 50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A)
GN=rplA PE=3 SV=1
Length = 235
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 161 IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLL 220
IA ++ E + G L G+ D + I +G + F +I P ++ + ++ +L
Sbjct: 74 IAVVTRGEKVNEATKAGADLAGEEDLVDSINKGEMN---FDLLISTPDMMPKVAKLGRVL 130
Query: 221 KKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLE 278
R +P K+ T+ DL G K + G K + D G G+ S+E L
Sbjct: 131 GPRGLMPNPKAGTVTTDLEGAIKEFKAG-KLEFRADKA----GIVHVRFGKASFSEEALL 185
Query: 279 DNLKRILADISTMKP 293
+NLK + I KP
Sbjct: 186 ENLKTLQTTIEKNKP 200
>sp|A2C033|RL1_PROM1 50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A)
GN=rplA PE=3 SV=1
Length = 235
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 161 IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLL 220
IA ++ E + G L G+ D + I +G + F +I P ++ + ++ +L
Sbjct: 74 IAVVTRGEKVNEATKAGADLAGEEDLVDSINKGEMN---FDLLISTPDMMPKVAKLGRVL 130
Query: 221 KKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLE 278
R +P K+ T+ DL G K + G K + D G G+ S+E L
Sbjct: 131 GPRGLMPNPKAGTVTTDLEGAIKEFKAG-KLEFRADKA----GIVHVRFGKASFSEEALL 185
Query: 279 DNLKRILADISTMKP 293
+NLK + I KP
Sbjct: 186 ENLKTLQTTIEKNKP 200
>sp|A5U9X7|RL1_HAEIE 50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittEE)
GN=rplA PE=3 SV=1
Length = 229
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R + +A +Q A ++ G LVG D + I++G + F VI +P D
Sbjct: 67 HGTGREVRVAVFTQGANADAAKEAGADLVGMEDLAEQIKKGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K ++G I+Y K+ G
Sbjct: 120 AMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ + S+ QL++NL+ +L ++ KP +
Sbjct: 174 TIGKANFSEVQLKENLQALLVALNKAKPTT 203
>sp|Q3ATP8|RL1_CHLCH 50S ribosomal protein L1 OS=Chlorobium chlorochromatii (strain
CaD3) GN=rplA PE=3 SV=1
Length = 229
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 155 GEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLM 214
G+ S++ C + + A + ++ G VG + I I+ G + +I P ++ L
Sbjct: 68 GKTVSVLVICKETK-AEEAKEAGADFVGFEEYITKIQEGWTGV---DVIIATPDVMGQLG 123
Query: 215 RIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDFH--IGR 269
++ +L R +P KS T+ +D+ K ++ G I++ + K + H +G+
Sbjct: 124 KVAKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVDK--------AGNIHAPVGK 175
Query: 270 LDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPE-KFKLD 320
+ E L N+ L ++ +KP + ++ I L S SP K K+D
Sbjct: 176 VSFDSEHLNTNIVAFLKEVVRLKPSA--AKGQYVQGIALSSTMSPSVKVKMD 225
>sp|A7MXE3|RL1_VIBHB 50S ribosomal protein L1 OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=rplA PE=3 SV=1
Length = 233
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R I +A +Q A ++ G +VG D + +++G + F V+ +P D
Sbjct: 67 HGTGREIRVAVFTQGANAEAAKEAGADIVGMEDLAEQVKKGEMN---FDVVVASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K + G ++Y K+ G
Sbjct: 120 AMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ + S EQ+++NL+ +L + KP S
Sbjct: 174 TIGKANFSAEQIKENLEALLVALKKAKPSS 203
>sp|Q9CK86|RL1_PASMU 50S ribosomal protein L1 OS=Pasteurella multocida (strain Pm70)
GN=rplA PE=3 SV=1
Length = 229
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 21/137 (15%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG RS+ +A +Q A ++ G LVG D + +++G + F VI +P D
Sbjct: 67 HGTGRSVRVAVFTQGANAEAAKEAGADLVGMEDLAELVKKGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K ++G ++Y K+ G
Sbjct: 120 AMRVVGQLGQILGPRGLMPNPKVGTVTPNVADAVKNAKSGQVRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLK 282
IG+++ S+EQL++NL+
Sbjct: 174 TIGKVNFSEEQLKENLQ 190
>sp|O32614|RL1_HAEDU 50S ribosomal protein L1 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=rplA PE=3 SV=2
Length = 229
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG RS +A +Q A + G LVG D + I++G + F VI +P D
Sbjct: 67 HGTGRSARVAVFTQGANAEAAKAAGADLVGMEDLAEQIKKGEMN---FDVVIASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ +++ K ++G I+Y K+ G
Sbjct: 120 AMRVVGQLGQVLGPRGLMPNPKVGTVTLNVAEAVKNAKSGQIRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG++D S+ QL++NL+ +LA ++ KP +
Sbjct: 174 TIGKVDFSEVQLKENLQALLAALNKAKPTT 203
>sp|Q87KQ1|RL1_VIBPA 50S ribosomal protein L1 OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=rplA PE=3 SV=1
Length = 233
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 154 HGEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILAD 212
HG R I +A +Q A ++ G +VG D + +++G + F V+ +P D
Sbjct: 67 HGTGRDIRVAVFTQGANAEAAKEAGADIVGMEDLAEQVKKGEMN---FDVVVASP----D 119
Query: 213 LMRIRGLL------KKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDF 265
MR+ G L + +P K T+ ++ K + G ++Y K+ G
Sbjct: 120 AMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKN------GIIHT 173
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPS 295
IG+ + S EQ+++NL+ +L + KP S
Sbjct: 174 TIGKANFSAEQIKENLEALLVALKKAKPSS 203
>sp|Q255E9|RL1_CHLFF 50S ribosomal protein L1 OS=Chlamydophila felis (strain Fe/C-56)
GN=rplA PE=3 SV=1
Length = 232
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 155 GEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLM 214
G+ I+ F + E A + D G VG D ++ I+ G V F + P ++ ++
Sbjct: 70 GKTLRILVFAA-GEKAKEALDAGADFVGSDDLVEKIKGGWVD---FDVAVATPDMMREVG 125
Query: 215 RIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDM 272
++ +L R +PT K+ T+ D++ L+ G K K D G + +G+L
Sbjct: 126 KLGKVLGPRNLMPTPKAGTVTTDVVKAIAELRKG-KIEFKADRA----GVCNAGVGKLSF 180
Query: 273 SQEQLEDNLKRILADISTMKPPS 295
+ L++N++ + + + KPP+
Sbjct: 181 DGQLLKENIEALCSALIKAKPPA 203
>sp|Q2JTQ5|RL1_SYNJA 50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rplA PE=3 SV=1
Length = 236
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 161 IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLL 220
+A ++ E + Q+ G VG D I+ I +G++ F +I P ++ + ++ LL
Sbjct: 75 VAVIARGEKVTEAQNAGADRVGFEDLIEEIGKGVID---FDLLIATPDVMPQVAKLGRLL 131
Query: 221 KKR--IPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQL 277
R +P+ K T+ +DL K + G ++Y K G G+ E L
Sbjct: 132 GPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADKT------GIVHLIFGKCKFPVEAL 185
Query: 278 EDNLKRILADISTMKPPS 295
+NLK + I +PP
Sbjct: 186 LENLKAVQESIDRNRPPG 203
>sp|C4XIP2|RL1_DESMR 50S ribosomal protein L1 OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=rplA PE=3 SV=1
Length = 235
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 137 KYMDPWTHIVEVEHSFDHGEDRSI--IAFC-SQHETAAQLQDMGVALVGDSDTIKGIERG 193
KY D +V S HG ++I AFC ET A+ + G VG D I+ ++ G
Sbjct: 53 KYSD---QMVRGAVSLPHGLGKTIRVAAFCKGDKETEAR--EAGADFVGGDDLIEKVKNG 107
Query: 194 LVTMPTFQFVICNPKILADLMRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSM 251
+ F + P ++A + +I +L R +P K+ T+ D+ L+ G K
Sbjct: 108 FLD---FDSAVATPDMMASVGKIGKILGPRGLMPNAKTGTVSFDIGKAVSELKAG-KVEF 163
Query: 252 KKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPS 295
K D G +G+ E+L DN + ++ + +KP +
Sbjct: 164 KVDKA----GVLHVPLGKRSFGPEKLLDNFRAVIDAVMRLKPSA 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,190,962
Number of Sequences: 539616
Number of extensions: 5487303
Number of successful extensions: 15461
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 452
Number of HSP's that attempted gapping in prelim test: 15434
Number of HSP's gapped (non-prelim): 464
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)