Query psy16349
Match_columns 351
No_of_seqs 158 out of 1090
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:04:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1569|consensus 100.0 9E-67 2E-71 494.4 21.9 298 23-332 14-316 (323)
2 CHL00129 rpl1 ribosomal protei 100.0 4E-56 8.6E-61 415.8 24.8 205 93-324 17-228 (229)
3 COG0081 RplA Ribosomal protein 100.0 1.5E-55 3.2E-60 407.6 23.1 204 91-321 16-227 (228)
4 TIGR01169 rplA_bact ribosomal 100.0 9.5E-55 2.1E-59 406.3 25.0 206 91-323 14-226 (227)
5 PRK05424 rplA 50S ribosomal pr 100.0 7.3E-55 1.6E-59 407.8 23.9 209 90-325 14-229 (230)
6 PRK04203 rpl1P 50S ribosomal p 100.0 2.3E-45 5.1E-50 340.6 24.3 197 97-320 6-214 (215)
7 PTZ00225 60S ribosomal protein 100.0 6.6E-44 1.4E-48 330.6 22.6 200 96-319 7-213 (214)
8 PTZ00029 60S ribosomal protein 100.0 7.5E-44 1.6E-48 330.8 22.6 198 97-319 8-215 (216)
9 cd00403 Ribosomal_L1 Ribosomal 100.0 2.6E-38 5.7E-43 289.9 22.8 199 98-319 1-208 (208)
10 TIGR01170 rplA_mito ribosomal 100.0 1.4E-35 3.1E-40 258.9 16.0 134 96-246 1-141 (141)
11 PF00687 Ribosomal_L1: Ribosom 100.0 9.9E-30 2.2E-34 234.6 19.9 185 118-314 17-219 (220)
12 KOG1570|consensus 99.8 6E-20 1.3E-24 167.6 8.6 204 94-319 6-217 (218)
13 PF13003 MRL1: Ribosomal prote 99.5 1E-14 2.2E-19 125.2 7.0 122 23-163 8-133 (133)
14 KOG1685|consensus 98.6 2.2E-07 4.8E-12 91.7 9.9 170 141-322 68-261 (343)
15 TIGR00853 pts-lac PTS system, 42.9 71 0.0015 25.9 5.6 61 157-220 3-71 (95)
16 KOG0338|consensus 42.5 99 0.0021 33.4 7.7 108 156-314 251-370 (691)
17 PRK05848 nicotinate-nucleotide 42.0 63 0.0014 31.5 6.0 70 158-251 183-255 (273)
18 COG1064 AdhP Zn-dependent alco 35.8 74 0.0016 32.1 5.5 45 158-208 191-238 (339)
19 PF05991 NYN_YacP: YacP-like N 34.9 53 0.0012 29.4 4.0 39 157-195 94-132 (166)
20 PF04476 DUF556: Protein of un 33.5 1E+02 0.0022 29.7 5.7 23 159-181 2-24 (235)
21 PRK02227 hypothetical protein; 32.4 1.4E+02 0.003 28.8 6.5 23 159-181 2-24 (238)
22 KOG1198|consensus 27.6 1E+02 0.0022 30.9 5.0 55 157-216 183-245 (347)
23 TIGR00078 nadC nicotinate-nucl 24.8 78 0.0017 30.6 3.5 67 157-249 178-246 (265)
24 PF00107 ADH_zinc_N: Zinc-bind 24.3 1.6E+02 0.0035 23.8 4.9 55 158-216 15-78 (130)
25 PF03765 CRAL_TRIO_N: CRAL/TRI 23.8 32 0.00069 24.7 0.5 28 81-108 28-55 (55)
26 TIGR02922 conserved hypothetic 23.7 37 0.0008 26.2 0.8 34 140-177 29-62 (67)
27 cd05564 PTS_IIB_chitobiose_lic 23.6 1.9E+02 0.0042 23.3 5.1 23 198-220 45-67 (96)
28 PF09558 DUF2375: Protein of u 23.5 41 0.00089 26.3 1.0 33 141-177 32-64 (71)
29 PRK05742 nicotinate-nucleotide 22.6 1.4E+02 0.0031 29.2 4.8 69 158-251 190-259 (277)
30 cd01572 QPRTase Quinolinate ph 22.3 92 0.002 30.1 3.4 70 157-250 182-251 (268)
31 COG4844 Uncharacterized protei 20.7 79 0.0017 24.9 2.1 16 272-287 59-74 (78)
No 1
>KOG1569|consensus
Probab=100.00 E-value=9e-67 Score=494.39 Aligned_cols=298 Identities=28% Similarity=0.454 Sum_probs=275.6
Q ss_pred eeeecccchhHHhhhchhhhhhccccchhhhhcccccCcccccccc---cccccCcCCCCCCCCcceeecccccccCCHH
Q psy16349 23 VVSFHTATPYYAARKGTRARKEGKKVRTEIKKVAWTPDSKKKKDIY---ASRKVDESNLTYPEDDIYLQKDYKLRIFQFQ 99 (351)
Q Consensus 23 ~~~~~~~~~~~aark~tr~k~~k~~~~~~~~k~~~~~~~~~~~~~~---~~~~~~~~~~~~P~DdVy~~~~~~~~~ysl~ 99 (351)
-...|+.+-..|||+++|..+.+++.+.+.+|.++++|+.+.+|.+ ...+.+++|..+|.||||+.++|+||.|++.
T Consensus 14 ~~l~~~s~~Sv~~r~~~r~~~~~~~~~~k~kk~~a~e~~~~~~kini~~~~~~~~~~~e~~pk~dv~lKr~~kr~~y~vq 93 (323)
T KOG1569|consen 14 DLLPTLSACSVAIRVPNRHFPAATKSAKKTKKLGAIEKKPAAKKINIERAKADLDMEGELEPKDDVYLKRLYKRQIYEVQ 93 (323)
T ss_pred cccCCccceeEEeeccccchhhHhhhhhHHHhhhccccCchhhhhhhHhhhcccchhhccCccchhhhhhhcCcchhhHH
Confidence 3455566777799999999999989999999999999999988888 5666777788889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHHHcCCC
Q psy16349 100 EALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVA 179 (351)
Q Consensus 100 EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~AkeaGA~ 179 (351)
+|+.++|+++||++||.|+++.+..++++|. .++-+++..++.+++.+||||.||+.++|+||++|.+.+++|+++||+
T Consensus 94 ~a~~~~ke~~~~sa~~~pk~~~~l~i~l~~~-a~~~~k~~~~~~~~v~vP~Pf~~ge~r~IavFtn~~~kveeArEaGA~ 172 (323)
T KOG1569|consen 94 KAVHLHKELQILSAYNVPKQPVNLRIELNML-AEKETKGVAPLQGSVTVPHPFAHGEIRKIAVFTNDASKVEEAREAGAA 172 (323)
T ss_pred HHHHHHHHhccchhhhCCCCceeeeEEeeee-eeeeccccCCCceeEeccccCCCCceEEEEEecCChHHHHHHHhcccc
Confidence 9999999999999999999999999999998 566668899999999999999999999999999998889999999999
Q ss_pred eeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHhhchhccCCCcCCCCCCccCHHHHHHHHhcc--cEEEeecCCCC
Q psy16349 180 LVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTG--IKYSMKKDPQE 257 (351)
Q Consensus 180 ~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~lrGLMkkk~P~~K~GTv~~DI~~~V~~~k~g--i~~r~~k~~~~ 257 (351)
+|||.|||++|.+|++.+ |||+|||||||||.|.+|||+|+.||||+++||||.||++||+.|++| ++|+.++
T Consensus 173 l~GG~dLIkkI~~Gei~~-Dyd~~vA~Pdim~~l~~Lr~iL~~r~Pn~k~gtvg~nipemieeFk~G~~i~~d~~~---- 247 (323)
T KOG1569|consen 173 LAGGTDLIKKIKSGEIVA-DYDFYVAHPDIMPELNRLRKILGPRFPNPKRGTVGRNIPEMIEEFKNGHEIKFDEER---- 247 (323)
T ss_pred ccccHHHHHHhhcCeEEE-eeceeeecchHHHHHHHHHHHhcccCCCcccCccccchHHHHHHhhCCccccccccc----
Confidence 999999999999999977 499999999999999999999999999999999999999999999999 6666555
Q ss_pred CCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccCCccCcccccc
Q psy16349 258 QDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSGLIEKPKAKE 332 (351)
Q Consensus 258 ~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~~~~~~~~~~~ 332 (351)
.++++++||+|+|+.+||++||.++++++|+++|++ +|.||.|++|+|+||| |+.||+.+++|.+.-+|
T Consensus 248 --~~~~~~~vGkl~mt~e~i~~Ni~a~i~av~t~rp~~---~G~fv~ra~L~Ss~g~-~i~l~i~p~i~~k~k~~ 316 (323)
T KOG1569|consen 248 --ENILQIKVGKLDMTSEQILANIQAVIAAVCTHRPKA---LGPFVVRALLRSSPGE-GILLKIDPLIPKKVKNE 316 (323)
T ss_pred --CceeeeeeeeecCCHHHHHHHHHHHHHHHHhcCCcc---cCceeeeeEeecCCCC-ceeEecccccceeccCC
Confidence 667999999999999999999999999999999986 8999999999999999 89999999999953333
No 2
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=100.00 E-value=4e-56 Score=415.80 Aligned_cols=205 Identities=23% Similarity=0.424 Sum_probs=196.5
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHH
Q psy16349 93 LRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQ 172 (351)
Q Consensus 93 ~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~ 172 (351)
.+.|+++|||+++|+.+ .++|.+||||+++|+.|++++++++||+|.|||++ |+..+|||||++ +.+++
T Consensus 17 ~~~y~l~eAi~~~k~~~--------~~kF~esvel~i~L~id~kk~~~~irg~v~LP~~~--gk~~kV~Vfa~~-~~~~e 85 (229)
T CHL00129 17 KKLYSPEEAINLLKETA--------TAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGT--GKTIRIAVLTNE-EKITE 85 (229)
T ss_pred ccccCHHHHHHHHHHhC--------cCCCCccEEEEEEECCCCCCCCCceeeEEECCCCC--CCCcEEEEECCh-HhHHH
Confidence 57999999999999876 88999999999999889988999999999999999 999999999999 56999
Q ss_pred HHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh------hchhccCCCcCCCCCCccCHHHHHHHHhcc
Q psy16349 173 LQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI------RGLLKKRIPTLKSQTLGVDLIGIAKRLQTG 246 (351)
Q Consensus 173 AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l------rGLMkkk~P~~K~GTv~~DI~~~V~~~k~g 246 (351)
|++|||++|||+|||++|++|++ +||+||||||||++|++| |||| |+|++|||++||.++|+++++|
T Consensus 86 Ak~aGad~vg~edLi~~ik~~~~---~fd~~iAt~d~m~~l~kLgriLGprGlM----P~pk~gTvt~di~~~V~~~k~G 158 (229)
T CHL00129 86 AKNAGADIVGSDDLIEEITKGNL---DFDLLIATPDMMPKLAKLGRVLGPRGLM----PSPKSGTVTTDLASAINEFKKG 158 (229)
T ss_pred HHHcCCCEeCHHHHHHHHHcCcc---cCCEEEECHHHHHHHHHhcCcccccCCC----CCCCCCCccccHHHHHHHHhcC
Confidence 99999999999999999999998 899999999999999998 9999 9999999999999999999997
Q ss_pred -cEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccCCc
Q psy16349 247 -IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSGL 324 (351)
Q Consensus 247 -i~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~~~ 324 (351)
++||+++ +|+||++||+++|+++||.|||.+++++|.+++|.++ +|.||+++|||||||| |++||+..+
T Consensus 159 ~v~~r~dk------~g~i~~~VG~~~m~~~~l~eNi~a~l~~i~~~~p~~~--kg~~ik~v~issTMGp-~v~i~~~~~ 228 (229)
T CHL00129 159 KLEYRADK------TGIVHVLFGKSNFTEEDLLENLQAIYESIEQNRPSGV--KGKYWKSFYICSTMGP-SIQIDISLL 228 (229)
T ss_pred cEEEEecC------CcEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccc--cCceEEEEEEECCCCC-CEEeccccc
Confidence 9999999 9999999999999999999999999999999999887 8889999999999999 999998754
No 3
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-55 Score=407.62 Aligned_cols=204 Identities=24% Similarity=0.422 Sum_probs=196.3
Q ss_pred cccccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhH
Q psy16349 91 YKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETA 170 (351)
Q Consensus 91 ~~~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a 170 (351)
.....|+++|||+++++.+ .++|++|||+.++|++|++|.++++||+|.|||++ |+..||||||++ +.+
T Consensus 16 d~~~~~~i~eai~~~ke~~--------~~kF~etVevav~L~vD~~k~dq~vrg~VvLP~g~--gk~vrV~Vfa~g-~~~ 84 (228)
T COG0081 16 DRNKLYSLEEAVKLLKETS--------KRKFDETVEVAVNLKVDPRKPDQRVRGSVVLPNGT--GKTVRVAVFADG-EKA 84 (228)
T ss_pred hhhhhhhHHHHHHHHHhcc--------ccCcceEEEEEEEcccCCCCcccccceeEECCCCC--CCccEEEEEcCh-HhH
Confidence 4568899999999999998 69999999999999999999999999999999999 999999999998 669
Q ss_pred HHHHHcCCCeeccHHHHHHHHcC-CccCCCccEEEEchhhHHHhHHh------hchhccCCCcCCCCCCccCHHHHHHHH
Q psy16349 171 AQLQDMGVALVGDSDTIKGIERG-LVTMPTFQFVICNPKILADLMRI------RGLLKKRIPTLKSQTLGVDLIGIAKRL 243 (351)
Q Consensus 171 ~~AkeaGA~~VGg~eLI~kI~~g-~i~~~~fD~~IAtpd~m~~L~~l------rGLMkkk~P~~K~GTv~~DI~~~V~~~ 243 (351)
++|++||||+||++||++.|++| |. +||+|||||||||.+++| |||| |+|++||++.||.++|+++
T Consensus 85 ~~A~~AGad~Vg~edl~e~ik~~r~~---~fD~~IAtpdmM~~v~~LG~vLGPRGlM----P~Pk~gTvt~Dv~~av~~~ 157 (228)
T COG0081 85 EEAKAAGADYVGGEDLIELIKNGRAK---DFDVFIATPDMMPLVGKLGKVLGPRGLM----PNPKTGTVTDDVAKAVEEL 157 (228)
T ss_pred HHHHHcCCCEecHHHHHHHHhCcchh---cCCEEEECchHHHHHHHHhhhcCCCCCC----CCCCCCCCCcCHHHHHHHH
Confidence 99999999999999999999999 77 999999999999999777 9999 9999999999999999999
Q ss_pred hcc-cEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEecc
Q psy16349 244 QTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDL 321 (351)
Q Consensus 244 k~g-i~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~ 321 (351)
|+| ++||+++ .|+||++||+++|++++|.|||.++++.|.+.+|..+ +|+||+++|||||||| |++|++
T Consensus 158 K~g~v~~R~dk------~g~ih~~iGk~sf~~e~L~eNi~a~l~~i~~~~p~~~--kg~~ik~v~vstTMGP-~v~v~~ 227 (228)
T COG0081 158 KKGTVEFRADK------AGVIHVPIGKVSFDDEKLAENIEALLNAIVKAKPAGA--KGQYIKSVYVSTTMGP-GVKVDL 227 (228)
T ss_pred hcCcEEEEECC------CceEEEEecCCCCCHHHHHHHHHHHHHHHHHhCcCCc--ccceEeEEEEecCCCC-CEEecc
Confidence 998 9999999 9999999999999999999999999999999999887 8999999999999999 999986
No 4
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=100.00 E-value=9.5e-55 Score=406.27 Aligned_cols=206 Identities=28% Similarity=0.463 Sum_probs=196.4
Q ss_pred cccccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhH
Q psy16349 91 YKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETA 170 (351)
Q Consensus 91 ~~~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a 170 (351)
...+.|++.|||++||+.+ .++|.++|||+++|+.+++|++++|||+|.|||++ |+..+|||||++ +.+
T Consensus 14 ~~~~~y~l~eAi~~lk~~~--------~~~f~esvel~i~L~id~kK~~~~irg~v~LP~~~--gk~~kV~Vfa~~-~~~ 82 (227)
T TIGR01169 14 DRNKLYSLDEAIALLKETA--------TAKFDETVEVAIRLGIDPRKSDQQVRGTVVLPHGT--GKTVRVAVFAKG-EKA 82 (227)
T ss_pred ccCCccCHHHHHHHHHhhc--------cCCCCCCEEEEEEECcCCCcCCCeeeEEEECCCCC--CCCcEEEEEcCc-hhH
Confidence 3467999999999999876 78999999999999889988899999999999999 999999999998 569
Q ss_pred HHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh------hchhccCCCcCCCCCCccCHHHHHHHHh
Q psy16349 171 AQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI------RGLLKKRIPTLKSQTLGVDLIGIAKRLQ 244 (351)
Q Consensus 171 ~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l------rGLMkkk~P~~K~GTv~~DI~~~V~~~k 244 (351)
++|++|||++|||+||+++|++|++ +||+|||||+|||+|++| |||| |++++|||++||.++|++++
T Consensus 83 ~~Ak~aGa~~vg~~eLi~~ik~~~~---~fd~~iat~~~m~~l~~Lg~iLGPrGlM----P~~k~gtv~~di~~~I~~~k 155 (227)
T TIGR01169 83 EEAKAAGADYVGSDDLIEKIKKGWL---DFDVVIATPDMMRVVGKLGRILGPRGLM----PNPKTGTVTADVAKAVKNAK 155 (227)
T ss_pred HHHHHcCCCEeCHHHHHHHHHcCCc---cCCEEEECHHHHHHHHHhccccccccCC----CCCCCCCccccHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999987 9999 99999999999999999999
Q ss_pred cc-cEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccCC
Q psy16349 245 TG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSG 323 (351)
Q Consensus 245 ~g-i~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~~ 323 (351)
+| ++||+++ +|+||++||+++|+++||+|||.++|++|.+++|.++ +|+||++||||||||| |++|++..
T Consensus 156 ~g~v~~r~~k------~g~i~~~VG~~~m~~e~i~eNi~a~l~~i~~~~p~~~--kg~~Ik~v~lssTmGp-~~~i~~~~ 226 (227)
T TIGR01169 156 KGQVEFRADK------AGNIHASIGKVSFDSEKLKENLEALLDAIKKAKPSGA--KGQYIKNIALSSTMGP-GIKVDLSS 226 (227)
T ss_pred cCcEEEEeCC------CCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccc--CCCEEEEEEEECCCCC-CEEeccCC
Confidence 98 9999999 9999999999999999999999999999999999887 8899999999999999 99999864
No 5
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=100.00 E-value=7.3e-55 Score=407.76 Aligned_cols=209 Identities=26% Similarity=0.458 Sum_probs=198.5
Q ss_pred ccccccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhh
Q psy16349 90 DYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHET 169 (351)
Q Consensus 90 ~~~~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~ 169 (351)
...++.|++.|||+.+|+.+ .++|.|+|||+++|+.+++|++++|||+|.|||++ |+..+|||||++ +.
T Consensus 14 ~~~~~~y~l~eAi~~lk~~~--------~~kF~esvel~v~L~id~kK~~~~irg~v~LP~~~--gk~~kI~Vfa~~-~~ 82 (230)
T PRK05424 14 VDRTKLYSLEEAIALVKETA--------TAKFDETVDVAVNLGVDPRKADQQVRGAVVLPHGT--GKTVRVAVFAKG-EK 82 (230)
T ss_pred ccccCccCHHHHHHHHHhhc--------cCCCCCcEEEEEEeCCCCCCCCCeeeEEEECCCCC--CCCcEEEEECCh-Hh
Confidence 35678999999999999876 78999999999999889988899999999999999 999999999988 56
Q ss_pred HHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh------hchhccCCCcCCCCCCccCHHHHHHHH
Q psy16349 170 AAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI------RGLLKKRIPTLKSQTLGVDLIGIAKRL 243 (351)
Q Consensus 170 a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l------rGLMkkk~P~~K~GTv~~DI~~~V~~~ 243 (351)
+++|++|||++|||+||+++|++|++ +||+|||||+|||+|++| |||| |+|+.|||++||.++|+++
T Consensus 83 ~~~Ak~aGa~~vg~eeLi~~ik~~~~---~fd~~iat~~~m~~l~~Lg~iLGPrGlM----P~pk~gTv~~di~~~I~~~ 155 (230)
T PRK05424 83 AEEAKAAGADIVGGEDLIEKIKGGWL---DFDVVIATPDMMGKVGKLGRILGPRGLM----PNPKTGTVTMDVAKAVKEA 155 (230)
T ss_pred HHHHHHcCCCEeCHHHHHHHHhcCCC---cCCEEEECHHHHHHHHHhccccccccCC----CCCCCCCcchhHHHHHHHH
Confidence 99999999999999999999999998 899999999999999888 9999 9999999999999999999
Q ss_pred hcc-cEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccC
Q psy16349 244 QTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLS 322 (351)
Q Consensus 244 k~g-i~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~ 322 (351)
++| ++||+++ +|+||++||+++|+++||.|||.+++++|.+++|.++ +|+||++||||||||| |++|++.
T Consensus 156 k~g~v~~r~~k------~g~i~~~IG~~~m~~e~i~eNi~a~l~~i~~~~p~~~--kg~~Ik~v~lssTmGp-~~~i~~~ 226 (230)
T PRK05424 156 KAGKVEFRVDK------AGIIHAPIGKVSFDAEKLKENLKALIDAIKKAKPATA--KGTYIKSVSLSSTMGP-GVKVDPS 226 (230)
T ss_pred hcCcEEEEecC------CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccc--CCCEEEEEEEECCCCC-CEEechH
Confidence 998 9999999 9999999999999999999999999999999999887 8999999999999999 9999998
Q ss_pred Ccc
Q psy16349 323 GLI 325 (351)
Q Consensus 323 ~~~ 325 (351)
++.
T Consensus 227 ~~~ 229 (230)
T PRK05424 227 SLA 229 (230)
T ss_pred Hhc
Confidence 653
No 6
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=100.00 E-value=2.3e-45 Score=340.57 Aligned_cols=197 Identities=19% Similarity=0.288 Sum_probs=181.1
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEe-CCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHHH
Q psy16349 97 QFQEALAAIRETHHPTMYNLPRAFIGATVEISTTT-HQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQD 175 (351)
Q Consensus 97 sl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L-~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~Ake 175 (351)
.+.|||+.+++.+ +.++|.|||||+++| +.|++++++++||+|.|||++ |+..+|||||++ +.+++|++
T Consensus 6 ~~~eai~~~k~~~-------~~~kf~esvel~v~Lk~id~~k~~~~irg~i~LP~~~--~k~~~V~vf~~~-~~~~~Ak~ 75 (215)
T PRK04203 6 KIEEAVKEALEEA-------PKRNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGR--GKEVKIAVIAKG-ELALQAKE 75 (215)
T ss_pred HHHHHHHHHHHhc-------ccCCCCceEEEEEEecCCCCCccCceeeEEEECCCCC--CCCcEEEEEcCh-HhHHHHHH
Confidence 4889999999854 489999999999999 779988899999999999999 899999999999 56999999
Q ss_pred cCCCeeccHHHHHHHHcCCc----cCCCccEEEEchhhHHHhHHh-------hchhccCCCcCCCCCCccCHHHHHHHHh
Q psy16349 176 MGVALVGDSDTIKGIERGLV----TMPTFQFVICNPKILADLMRI-------RGLLKKRIPTLKSQTLGVDLIGIAKRLQ 244 (351)
Q Consensus 176 aGA~~VGg~eLI~kI~~g~i----~~~~fD~~IAtpd~m~~L~~l-------rGLMkkk~P~~K~GTv~~DI~~~V~~~k 244 (351)
|||++|||.|+|++|.+|.. ++.+||+|||||+||+.|+++ ||+| |+|++||+ |+.++|++++
T Consensus 76 aGa~~v~~~e~L~~i~~~~k~~rkl~~~fD~~lA~~~im~~l~k~LGk~lgprgkm----P~p~~~t~--di~~~i~~~~ 149 (215)
T PRK04203 76 AGADYVITREELEELGGDKRAAKKLANEYDFFIAEADLMPLIGRYLGPVLGPRGKM----PTPLPPNA--DIKPLVERLK 149 (215)
T ss_pred cCCCEEeCHHHHHHHhcChHHHhhhhhcCCEEEECHHHHHHHHHHHhhhcCcCCCC----CCCcCCCC--CHHHHHHHHh
Confidence 99999999999999988722 244899999999999999884 7888 99999996 9999999999
Q ss_pred cccEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEec
Q psy16349 245 TGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLD 320 (351)
Q Consensus 245 ~gi~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~ 320 (351)
+++.||+++ .|+++++||+++|+++||.|||.+++++|.+.+|.. ++||+++||+||||| |++|-
T Consensus 150 ~~~~~r~~k------~~~i~v~VG~~~m~~e~l~eNi~avl~~i~~~~p~g----~~~Iksi~lktTmgp-~i~i~ 214 (215)
T PRK04203 150 NTVRIRTKD------QPTFHVRVGTEDMSPEELAENIDAVLNRIESKLEKG----RQNIKSVYVKTTMGP-AVKVE 214 (215)
T ss_pred hceEEEeCC------CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccc----cccEEEEEEECCCCC-CEEee
Confidence 999999988 899999999999999999999999999999999954 369999999999999 99874
No 7
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=6.6e-44 Score=330.62 Aligned_cols=200 Identities=13% Similarity=0.204 Sum_probs=177.1
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEe-CCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHH
Q psy16349 96 FQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTT-HQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQ 174 (351)
Q Consensus 96 ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L-~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~Ak 174 (351)
-.++|||+.+.+.. +.++|+|||||+++| +.|+++ ++++||+|.|||++ |+..+|||||++ +.+++|+
T Consensus 7 ~~i~~Av~~~lk~~-------~~~kF~Etvdl~v~Lk~iDp~k-d~~irg~v~LPhg~--gk~~kV~v~~~~-~~~~~Ak 75 (214)
T PTZ00225 7 QTLSEAIQAVLKVD-------KERKFKESIDLQVNLKNYDPQK-DKRFSGSLKLPNVC--RPRMTVCLLCDL-VHEDIAK 75 (214)
T ss_pred HHHHHHHHHHHHhc-------ccCCCCceEEEEEeccCcCCCc-CcccceeEECCCCC--CCCcEEEEECCh-HHHHHHH
Confidence 35889999976443 488999999999999 669976 99999999999999 999999999999 5589999
Q ss_pred HcCCCeeccHHHHHHHHcCCc---cCCCccEEEEchhhHHHhHHh--hchh-ccCCCcCCCCCCccCHHHHHHHHhcccE
Q psy16349 175 DMGVALVGDSDTIKGIERGLV---TMPTFQFVICNPKILADLMRI--RGLL-KKRIPTLKSQTLGVDLIGIAKRLQTGIK 248 (351)
Q Consensus 175 eaGA~~VGg~eLI~kI~~g~i---~~~~fD~~IAtpd~m~~L~~l--rGLM-kkk~P~~K~GTv~~DI~~~V~~~k~gi~ 248 (351)
++||+++|.+||++.+++++. ++.+||+|||+|+|||.|+++ ++++ +.|||++ ++++.||.++|+++++.++
T Consensus 76 ~aGad~v~~e~l~~l~k~~~~~kkl~~~fD~fiA~~~~m~~lgk~LGp~~~p~gK~P~~--~~~~~dl~~~i~~~k~~v~ 153 (214)
T PTZ00225 76 KEGVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRMGKFPTV--CSPSESLPDKVVELRSTVK 153 (214)
T ss_pred HCCCCEECHHHHHHHHhccHHHHHHHhhCCEEEECHHHHHhhhhhcCCCCCcCCCCCcc--cCCccCHHHHHHHHhheeE
Confidence 999999999999999999873 345899999999999999998 3334 2234663 4457899999999999999
Q ss_pred EEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEe
Q psy16349 249 YSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKL 319 (351)
Q Consensus 249 ~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I 319 (351)
||+++ .|++|++||+++|+++||.||+.++++.|.+.+|. +|+||+++||+||||| +++|
T Consensus 154 ~r~~k------~~~~~~~VGk~~m~~e~i~eNi~a~l~~l~~~~p~----k~~nIksv~iktTMGp-~~~~ 213 (214)
T PTZ00225 154 FQLKK------VLCLGTCVGHVEMTEEQLRQNVVMAINFLVSLLKK----NWQNLKSAYIKSTMGK-PQRI 213 (214)
T ss_pred EEecC------ccEEEeEEccCCCCHHHHHHHHHHHHHHHHHhCCc----CCceEeEEEEECCCCC-CEeC
Confidence 99999 99999999999999999999999999999999994 5789999999999999 9875
No 8
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=7.5e-44 Score=330.77 Aligned_cols=198 Identities=16% Similarity=0.202 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEe-CCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHHH
Q psy16349 97 QFQEALAAIRETHHPTMYNLPRAFIGATVEISTTT-HQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQD 175 (351)
Q Consensus 97 sl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L-~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~Ake 175 (351)
.+++||+.+++.. +.+.++|.||||++++| +.|+++ ++++||+|.|||++ |+..+|||||++ +.+++|++
T Consensus 8 ~~~~av~~~~~~~-----~~~~~~f~esv~~~i~Lk~id~~~-~~~ir~~v~LP~~~--gk~~~v~V~a~~-~~~~~Ak~ 78 (216)
T PTZ00029 8 ALRKAIAEILEGS-----EEKKRKFVETVELQIGLKDYDTQK-DKRFSGSVKLPNVP--KPNLKVCVLGDA-VHCDEAKK 78 (216)
T ss_pred HHHHHHHHHHhhc-----cccccCCceEEEEEEEcCCCCCCc-CcccceeEecCCCC--CCCcEEEEECCc-HHHHHHHH
Confidence 4789999999732 34799999999999999 568976 99999999999999 999999999999 56999999
Q ss_pred cCCCeeccHHHHHHHHcCCc---cCCCccEEEEchhhHHHhHHh--hchhccCCCcCCCCCC---ccCHHHHHHHHhccc
Q psy16349 176 MGVALVGDSDTIKGIERGLV---TMPTFQFVICNPKILADLMRI--RGLLKKRIPTLKSQTL---GVDLIGIAKRLQTGI 247 (351)
Q Consensus 176 aGA~~VGg~eLI~kI~~g~i---~~~~fD~~IAtpd~m~~L~~l--rGLMkkk~P~~K~GTv---~~DI~~~V~~~k~gi 247 (351)
|||+++|++||++.++++++ ++.+||+|||+|+|||.|+++ +||| |++|.|++ +.|+..+|+++++++
T Consensus 79 aGa~vvg~edL~~~~k~~k~~kkl~~~fD~flA~~~im~~l~riLGp~l~----p~~K~P~~v~~~~d~~~~i~~~k~~v 154 (216)
T PTZ00029 79 LGLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPRLLGPGLN----KAGKFPTLITHNDDIEDKINELKSSV 154 (216)
T ss_pred cCCCEecHHHHHHhhhhHHHHhcccccCCEEEECHHHHHHHHHHhccccc----cCCCCCCcccCccCHHHHHHHHHheE
Confidence 99999999999995544432 234899999999999999998 9999 66666644 789999999999999
Q ss_pred EEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCC-CceeEEEEEcCCCCCceEe
Q psy16349 248 KYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDE-DFITRILLWSEPSPEKFKL 319 (351)
Q Consensus 248 ~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg-~fI~~v~LsSTmGpe~i~I 319 (351)
+||+++ .|++|++||+++|+++||.|||.++++.|.+.++ +| .||+++||+||||| +++|
T Consensus 155 ~~r~~k------~~~i~v~VG~~~~~~e~l~eNi~avl~~i~~~~~-----kg~~~Iksv~lktTmgp-~v~v 215 (216)
T PTZ00029 155 KFQLKK------VLCLGVAVGNVEMTEEQLRQNIVLSINFLVSLLK-----KNWQNIKTLHIKSTMGK-PQRI 215 (216)
T ss_pred EEEECC------CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhc-----cccccEeEEEEECCCCC-CEeC
Confidence 999999 8999999999999999999999999999999987 55 79999999999999 9886
No 9
>cd00403 Ribosomal_L1 Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.
Probab=100.00 E-value=2.6e-38 Score=289.94 Aligned_cols=199 Identities=24% Similarity=0.409 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHHHcC
Q psy16349 98 FQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMG 177 (351)
Q Consensus 98 l~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~AkeaG 177 (351)
+.+||+.|++.++ ....+.++|+|+++|+....+..+++++.|.|||++ ++..+|||||++ ++++.|+++|
T Consensus 1 ~~~Ai~~l~~~~~------~~~~~~~~v~l~i~l~~~~~~~~~~~~~~i~LPh~~--~~~~~i~v~~~d-~~~~~a~~~~ 71 (208)
T cd00403 1 LEEAIKALKKTSV------KKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGL--GKDVKVCVFAKD-EQAKEAKAAG 71 (208)
T ss_pred CHHHHHHHHHhcc------ccCCCCceEEEEEEeCCCCCccccccceeEECCCCC--CCCeEEEEEcCh-HhHHHHHHcC
Confidence 3699999998874 366888999999998776556789999999999999 789999999998 5588999999
Q ss_pred CCeeccHHHHHHHHcCCc--cCCCccEEEEchhhHHHhHHh-------hchhccCCCcCCCCCCccCHHHHHHHHhcccE
Q psy16349 178 VALVGDSDTIKGIERGLV--TMPTFQFVICNPKILADLMRI-------RGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIK 248 (351)
Q Consensus 178 A~~VGg~eLI~kI~~g~i--~~~~fD~~IAtpd~m~~L~~l-------rGLMkkk~P~~K~GTv~~DI~~~V~~~k~gi~ 248 (351)
|+++|+++|++++++++. ++.+||+|||++++|+.+.+. ||+| |+++.||+++|+.++|+++++++.
T Consensus 72 a~vig~~~L~~~~~~~~~~~l~~~~D~fla~~~~~~~~~~~lgk~~~~k~k~----P~~~~~t~~~~l~~~i~~~~~~~~ 147 (208)
T cd00403 72 ADVVGGEDLKKKIKNGEAKKLAKDFDLFLADPRIMMLLPKLLGKVLGPRGKM----PNPKTGTVTEDLAKAIEEAKSSVE 147 (208)
T ss_pred CCEEcHHHHHHHhhcchhhhhhhcCCEEEECHHHHHHHHHHhccccccCCCC----CcCCCCCCcccHHHHHHHHHhCeE
Confidence 999999999999999984 355999999999999887765 6666 999999999999999999999999
Q ss_pred EEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEe
Q psy16349 249 YSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKL 319 (351)
Q Consensus 249 ~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I 319 (351)
|+.++ .|+++++||+++|+++||+||+.++++.|.+++|.. .+.+|+++||+||||| ++.|
T Consensus 148 ~~~~~------~~~~~v~VG~~~m~~~~l~eNi~~vi~~i~~~~~~~---~~~~i~~v~lktt~~~-~lpI 208 (208)
T cd00403 148 FRLDK------GGCIHVPVGKVSMSPEQLVENIEAVINALVKKLPSK---KGQNIKSIYLKTTMGP-SLPI 208 (208)
T ss_pred EEECC------CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcc---cCeEEEEEEEECCCCC-CeEC
Confidence 99988 889999999999999999999999999999999953 5789999999999999 8875
No 10
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=100.00 E-value=1.4e-35 Score=258.86 Aligned_cols=134 Identities=22% Similarity=0.446 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHHH
Q psy16349 96 FQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQD 175 (351)
Q Consensus 96 ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~Ake 175 (351)
|++.||+++||+++++. | +|++|||++++|+.++++. .|||+|.|||++ |++.||||||++++.+++|++
T Consensus 1 y~i~eA~~~lk~~~~~~----~--~~~etvel~i~L~~~~~~~--~irg~v~LP~~~--~k~~kV~Vf~~~~~~~~~Ak~ 70 (141)
T TIGR01170 1 YKVIKAFVYLKTKSISM----Y--VPKQSVNLDIGLLMELGKE--SVQGMFSFPHPF--GKEPKIAVFTKGASEVEEARE 70 (141)
T ss_pred CCHHHHHHHHHHhcccC----C--CCCceEEEEEEECCCCCCC--CceEEEECCCCC--CCCCEEEEECCChHHHHHHHH
Confidence 89999999999998432 2 8999999999997766443 499999999999 899999999999665788999
Q ss_pred cCCCeeccHHHHHHHHcCCccCCC-ccEEEEchhhHHHhHHh------hchhccCCCcCCCCCCccCHHHHHHHHhcc
Q psy16349 176 MGVALVGDSDTIKGIERGLVTMPT-FQFVICNPKILADLMRI------RGLLKKRIPTLKSQTLGVDLIGIAKRLQTG 246 (351)
Q Consensus 176 aGA~~VGg~eLI~kI~~g~i~~~~-fD~~IAtpd~m~~L~~l------rGLMkkk~P~~K~GTv~~DI~~~V~~~k~g 246 (351)
|||+++||+|||++|++|++ + ||+|||||+|||+|+.| |||| |++++|||++||.++|+++++|
T Consensus 71 aGa~~vg~edLi~~i~~g~~---~~fd~~iA~~~~m~~l~~Lg~iLGprGlM----P~~k~gTv~~di~~~I~~~k~G 141 (141)
T TIGR01170 71 AGADYVGGDDLIKKIEDGEI---KPFDYLIAHPDIVPELAQLRRLLGPKGLM----PSPKRGTVGDNLLSMIETFKKG 141 (141)
T ss_pred cCCCEeCHHHHHHHHhcCCc---ccccEEEECHHHHHHHHHhhcccccCcCC----CCCCCCCcccCHHHHHHHHhCc
Confidence 99999999999999999999 6 99999999999999987 8888 9999999999999999999987
No 11
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L1 is the largest protein from the large ribosomal subunit. The L1 protein contains two domains: 2-layer alpha/beta domain and a 3-layer alpha/beta domain (interrupts the first domain). In Escherichia coli, L1 is known to bind to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups: Eubacterial L1. Algal and plant chloroplast L1. Cyanelle L1. Archaebacterial L1. Vertebrate L10A. Yeast SSM1. ; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3QOY_A 3BBO_D 1VSA_A 1VSP_A 2NOQ_G 3IZS_A 1S1I_A 3O5H_A 3O58_A 2WRL_C ....
Probab=99.97 E-value=9.9e-30 Score=234.65 Aligned_cols=185 Identities=19% Similarity=0.312 Sum_probs=155.9
Q ss_pred CccceeEEEEEEEeCCCcCCCCCce-eEEEEecCCCCCCCceEEEEEcCChhhHH--------HHHHcCCCeeccHHHHH
Q psy16349 118 RAFIGATVEISTTTHQKKVKYMDPW-THIVEVEHSFDHGEDRSIIAFCSQHETAA--------QLQDMGVALVGDSDTIK 188 (351)
Q Consensus 118 ~~~f~esveL~m~L~~k~~K~~~~~-rg~V~LPh~~~~gk~~kVlVFa~~~e~a~--------~AkeaGA~~VGg~eLI~ 188 (351)
...+.++|+|.+.+..-+.+...++ ++.|.|||++. .+..+|||||++++... .|.++|+.++|+++|++
T Consensus 17 ~~~~~~~v~l~i~~~~~~~~~~~~~~~~~i~LPh~~~-~~~~~vcli~~d~~~~~~~~~~~~~~~~~~~~~vi~~~~L~~ 95 (220)
T PF00687_consen 17 DDNFDESVYLQITLKKIPKKKDKSFKPGRIPLPHPLY-IKNSKVCLIVKDPQKKAKEKEKLEEKAVEAGAKVIGGEELKK 95 (220)
T ss_dssp CSSSSTEEEEEEEESSSTTSSCTST-EEEEEBSTSSS--SSSBEEEEESCHHHHHH-------HHHHTTCSEEECHHHHH
T ss_pred cCCCCcEEEEEEEeCcCCCccccccccceeeecCCCC-CCccEEEEEecCcchhhhhhhhhhhhhhhcccceecHHHHHH
Confidence 6688899999999877555566777 99999999993 27899999998865222 35789999999999999
Q ss_pred H---HHcCCccCCCccEEEEchhhHHHhHH-hhchh---ccCCCcCCCCCCccCHHHHHHHHhcccEEEee-cCCCCCCc
Q psy16349 189 G---IERGLVTMPTFQFVICNPKILADLMR-IRGLL---KKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMK-KDPQEQDF 260 (351)
Q Consensus 189 k---I~~g~i~~~~fD~~IAtpd~m~~L~~-lrGLM---kkk~P~~K~GTv~~DI~~~V~~~k~gi~~r~~-k~~~~~~~ 260 (351)
+ +..++.++.+||+|||++++|+.|.+ |.+.+ |.++|++..-+ .+||.+.|+.+.+|+.|+.. + +
T Consensus 96 ~~~~~~~~r~l~~~~d~flad~~i~~~l~~~Lgk~~~~~k~k~P~~v~~~-~~~l~~~i~~~~~~~~~~~~~~------~ 168 (220)
T PF00687_consen 96 KYKTIEAKRKLAKSYDFFLADPRIMPKLPKLLGKIFYGKKGKMPIPVTLS-KEDLKEQIEKALNSTKFRLSGK------G 168 (220)
T ss_dssp HHCHHHHCHHHHHCSSEEEEEGGGHHHHHHHTHHHH-CCTTTSCEEBSSH-TSCHHHHHHHHHTEEEEEETBT------S
T ss_pred HHHHHHHHHHHHhhcCEEEECHHHHHHHHHhhhhheecccCCcceEEecc-chhHHHHHHHHHCCEEEEeecc------C
Confidence 9 89999777799999999999999999 42233 23669994322 37999999999999888887 6 9
Q ss_pred ceEEEEeeCCCCCHHHHHHHHHHHHHHHHhc-CCCCCCCCCCceeEEEEEcCCCC
Q psy16349 261 GYSDFHIGRLDMSQEQLEDNLKRILADISTM-KPPSKPEDEDFITRILLWSEPSP 314 (351)
Q Consensus 261 G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~-~p~~~~~kg~fI~~v~LsSTmGp 314 (351)
|+++++||+++|+++||+|||.++++.|.++ .|. ...+|+++||+|||||
T Consensus 169 ~~~~v~VG~~~~~~~~i~eNi~~~i~~i~~~~~~~----g~~~I~~i~ikst~s~ 219 (220)
T PF00687_consen 169 GCISVKVGHLSMTDEQIVENIKAVIKAIVSKPLPK----GWKNIKSIYIKSTMSP 219 (220)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHTTTSS----SSGSEEEEEEEESSSE
T ss_pred CeeecCccCCCCCHHHHHHHHHHHHHHHHHhhhcc----CcceEEEEEEECCCCC
Confidence 9999999999999999999999999999999 552 2359999999999998
No 12
>KOG1570|consensus
Probab=99.81 E-value=6e-20 Score=167.65 Aligned_cols=204 Identities=16% Similarity=0.224 Sum_probs=170.9
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCC-CcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHH
Q psy16349 94 RIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQ-KKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQ 172 (351)
Q Consensus 94 ~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~-k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~ 172 (351)
..+++.+||..+.-.+. - ..++.|.+||+++++|+. ++ +.+.+|.+++.|||.. .+..++|||++..+ ..+
T Consensus 6 ~~~~l~~~v~~i~~~~~--~--~k~~~~~~tielQi~Lk~ydp-~Kdkr~s~~~~l~~~~--~p~~k~cv~gd~~h-~~~ 77 (218)
T KOG1570|consen 6 EEEALREAVAEILLRSK--E--FKNRNFVETIELQINLKNYDP-QKDKRFSGSVKLPHAP--RPKMKVCVIGDQQH-CDE 77 (218)
T ss_pred hHHHHHHHHHHHHhccc--c--ccCccceeeeeeeecccccCh-hHhCcccceEecCCCC--CccceeeeechHHH-HHH
Confidence 34566667666552210 0 136799999999999977 88 4689999999999999 78999999999954 899
Q ss_pred HHHcCCCeeccHHHHHHHHcCCc----cCCCccEEEEchhhHHHhHHh--hchhcc-CCCcCCCCCCccCHHHHHHHHhc
Q psy16349 173 LQDMGVALVGDSDTIKGIERGLV----TMPTFQFVICNPKILADLMRI--RGLLKK-RIPTLKSQTLGVDLIGIAKRLQT 245 (351)
Q Consensus 173 AkeaGA~~VGg~eLI~kI~~g~i----~~~~fD~~IAtpd~m~~L~~l--rGLMkk-k~P~~K~GTv~~DI~~~V~~~k~ 245 (351)
|++.|..+.- -|.+++.-.++- .++.||+|||..++..+|.++ .||-+. +||++.... +|+.+.+++.+.
T Consensus 78 ak~~~~p~m~-~d~lkklnk~Kklvkklakky~~flase~~ikQlpr~lgp~l~kaGkfps~l~~~--d~l~akv~evk~ 154 (218)
T KOG1570|consen 78 AKAIDLPAMD-IDALKKLNKNKKLVKKLAKKYDAFLASESLIKQLPRILGPGLSKAGKFPSLLVHG--DSLYAKVEEVKS 154 (218)
T ss_pred hhcCCCCCcC-HHHHhcCcccchHHHHHHHHhhhHHhhHHHHHHhhhhhcccccccccCCccccch--HHHHHHHHHHHh
Confidence 9999999776 555677766443 567899999999999999998 667766 899999654 899999999999
Q ss_pred ccEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEe
Q psy16349 246 GIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKL 319 (351)
Q Consensus 246 gi~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I 319 (351)
+++|+..+ .-++.+.||...|++++|.+||.--++++.+.+.++ +++++..+|+||||| ..++
T Consensus 155 t~k~q~kk------vKOGavaVGhv~M~d~el~~nI~l~vnFlVSlLKkn----wQNvral~iKst~g~-p~~l 217 (218)
T KOG1570|consen 155 TIKFQMKK------VLCLAVAVGHVGMTDEELVYNIHLAVNFLVSLLKKN----WQNVRALYIKSTMGK-PQRL 217 (218)
T ss_pred hHHHHHHh------hhheeeeecCCCCCHHHHHHhhhhhhhhHHHHHhhc----ccchhheeeccCCCC-ceec
Confidence 99999998 667999999999999999999999999999998754 589999999999999 6654
No 13
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates.
Probab=99.54 E-value=1e-14 Score=125.19 Aligned_cols=122 Identities=14% Similarity=0.199 Sum_probs=94.4
Q ss_pred eeeecccchhHHhhhchhhh---hhccccchhhhhcccccCcccccccccccccC-cCCCCCCCCcceeecccccccCCH
Q psy16349 23 VVSFHTATPYYAARKGTRAR---KEGKKVRTEIKKVAWTPDSKKKKDIYASRKVD-ESNLTYPEDDIYLQKDYKLRIFQF 98 (351)
Q Consensus 23 ~~~~~~~~~~~aark~tr~k---~~k~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~~P~DdVy~~~~~~~~~ysl 98 (351)
+++.+++.|-|||...-+.| +.++..+.+...++. +++ .+++.+ +++.|+ .++|++++|.+
T Consensus 8 ~vn~~~~~R~yaAa~k~~~k~~kk~kk~~~~k~~~ek~--~d~------~ek~k~y~~~e~~-------~~lyPr~Iyev 72 (133)
T PF13003_consen 8 SVNDFVPYRHYAAAAKKKKKPAKKTKKGNKEKKNDEKK--VDN------IEKIKSYSYMEWE-------KRLYPRPIYEV 72 (133)
T ss_pred eeeeccchHHHHHHHhhhccchhhccchhhcccccccc--ccc------ccccccccccccc-------ceeccccHHHH
Confidence 67888999999999432222 222222233322222 233 778888 778887 78999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEE
Q psy16349 99 QEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAF 163 (351)
Q Consensus 99 ~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVF 163 (351)
++||.+|+.++ +++|+.|+++++..+.|+|.|. ++ +.+++|.+.|.|||+|. .+..+|+||
T Consensus 73 e~Ai~mLKkfQ-~lDfT~pkQ~VYldL~Ldm~l~-KK-kkVePF~s~i~lPypF~-~eiNKv~VF 133 (133)
T PF13003_consen 73 EKAIDMLKKFQ-ILDFTSPKQPVYLDLTLDMKLE-KK-KKVEPFASVILLPYPFT-SEINKVLVF 133 (133)
T ss_pred HHHHHHHHhcc-cccCCCCCCcEEEeeeehhhhc-cc-cccCCCccceecccccc-cccceeeeC
Confidence 99999999999 9999999999999999999853 43 57999999999999996 457789987
No 14
>KOG1685|consensus
Probab=98.59 E-value=2.2e-07 Score=91.66 Aligned_cols=170 Identities=16% Similarity=0.265 Sum_probs=124.7
Q ss_pred ceeEEEEecCCCCC----CCceEEEEEcCChhhH--------HHHHHcCCC----eeccHHHHHHHHc---CCccCCCcc
Q psy16349 141 PWTHIVEVEHSFDH----GEDRSIIAFCSQHETA--------AQLQDMGVA----LVGDSDTIKGIER---GLVTMPTFQ 201 (351)
Q Consensus 141 ~~rg~V~LPh~~~~----gk~~kVlVFa~~~e~a--------~~AkeaGA~----~VGg~eLI~kI~~---g~i~~~~fD 201 (351)
..+-.+.+||++.+ .....||+|.+|.++- +.-.+.|.. ++++.+|-..... ..-+++.||
T Consensus 68 ~n~~~IP~k~~~~~~~~~~~~~~vcLIvkD~~~~~~t~~~~~d~l~~~gi~~itkVI~~~~LK~~yksyeaKr~L~~sfD 147 (343)
T KOG1685|consen 68 TNKLKIPLKHLLKKLLLKHDDTDVCLIVKDLQQSYLTEEDAEDLLESEGIKSITKVISLSKLKRDYKSYEAKRKLLSSFD 147 (343)
T ss_pred cccccccCcchhcccccCCCCCceEEEecCchhccccHHHHHHHHHHcCCccceeeeehHHHHHHHHHHHHHHHHHhhcc
Confidence 33444445555432 1467899999986521 233567877 6677776443322 222677899
Q ss_pred EEEEchhhHHHhHHhhchh---ccCCCcCCCCCCccC--HHHHHHHHhcccEEEeecCCCCCCcceEEEEeeCCCCCHHH
Q psy16349 202 FVICNPKILADLMRIRGLL---KKRIPTLKSQTLGVD--LIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQ 276 (351)
Q Consensus 202 ~~IAtpd~m~~L~~lrGLM---kkk~P~~K~GTv~~D--I~~~V~~~k~gi~~r~~k~~~~~~~G~I~v~IGkl~m~~eq 276 (351)
+|||.--+++.|.++=|.- +++.|-+.+=. -.+ +...|++..+++-|++-. .-.+-+.+|.++|+.++
T Consensus 148 lflaD~RV~~~LP~llGK~f~q~kk~Pv~i~l~-k~~~~l~~qi~~a~~~t~~~~~~------g~~~~i~vg~l~~~~~~ 220 (343)
T KOG1685|consen 148 LFLADDRVIPLLPKLLGKEFYQKKKVPVSIRLS-KKNELLKQQIENACGSTYFRLRK------GTSSAIKVGHLGNTSEE 220 (343)
T ss_pred EEEEcchhHhHHHHHhhhhhcccccCceEEEec-ccchHHHHHHHHHhhhheeeccC------CceeEEEeccccccHHH
Confidence 9999999999999985542 34778776421 123 799999999999999865 55777899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccC
Q psy16349 277 LEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLS 322 (351)
Q Consensus 277 L~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~ 322 (351)
|.|||.++++.|....|.+ +.+|.++||++.-|+ ++.|=.+
T Consensus 221 l~ENv~~vlk~l~e~~P~~----~~~Irsl~lKt~~s~-aLPly~s 261 (343)
T KOG1685|consen 221 LAENVVAVLKGLSEILPGG----WKNIRSLHLKTSRSP-ALPLYVS 261 (343)
T ss_pred HHHHHHHHHHHHHHHccch----HhHhHHHhhhccCCc-ccceeec
Confidence 9999999999999888843 368999999999988 7766443
No 15
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.93 E-value=71 Score=25.95 Aligned_cols=61 Identities=11% Similarity=0.238 Sum_probs=37.3
Q ss_pred ceEEEEEcCCh--------hhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHhhchh
Q psy16349 157 DRSIIAFCSQH--------ETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLL 220 (351)
Q Consensus 157 ~~kVlVFa~~~--------e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~lrGLM 220 (351)
..+|+++|.+- ...+.|.+.|.++--..-=+.++.+ ...+||.+|.+|.+--.+..++.+.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~---~~~~~Dvill~pqi~~~~~~i~~~~ 71 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGE---KLDDADVVLLAPQVAYMLPDLKKET 71 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHh---hcCCCCEEEECchHHHHHHHHHHHh
Confidence 56899999741 1345566777764221111122221 1237999999999988888876555
No 16
>KOG0338|consensus
Probab=42.48 E-value=99 Score=33.39 Aligned_cols=108 Identities=18% Similarity=0.305 Sum_probs=68.5
Q ss_pred CceEEEEEcCChhhHHHHHH------------cCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHhhchhccC
Q psy16349 156 EDRSIIAFCSQHETAAQLQD------------MGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKR 223 (351)
Q Consensus 156 k~~kVlVFa~~~e~a~~Ake------------aGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~lrGLMkkk 223 (351)
...||||+++..+.+-..-. .|. .|||-+|-.+=+ .+=+.+|++||||.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L-~vGGL~lk~QE~---~LRs~PDIVIATPG--------------- 311 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGL-AVGGLDLKAQEA---VLRSRPDIVIATPG--------------- 311 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeee-eecCccHHHHHH---HHhhCCCEEEecch---------------
Confidence 46799999998664332211 122 256666533211 11124666676653
Q ss_pred CCcCCCCCCccCHHHHHHHHhcccEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCce
Q psy16349 224 IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFI 303 (351)
Q Consensus 224 ~P~~K~GTv~~DI~~~V~~~k~gi~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI 303 (351)
-+|..++++-.|.++. |.+-| +|=-+--|.|-+..=|+.|....|++ =
T Consensus 312 --------------RlIDHlrNs~sf~lds---------iEVLv--lDEADRMLeegFademnEii~lcpk~-------R 359 (691)
T KOG0338|consen 312 --------------RLIDHLRNSPSFNLDS---------IEVLV--LDEADRMLEEGFADEMNEIIRLCPKN-------R 359 (691)
T ss_pred --------------hHHHHhccCCCccccc---------eeEEE--echHHHHHHHHHHHHHHHHHHhcccc-------c
Confidence 3466677777777765 44433 55567789999999999999999865 2
Q ss_pred eEEEEEcCCCC
Q psy16349 304 TRILLWSEPSP 314 (351)
Q Consensus 304 ~~v~LsSTmGp 314 (351)
..+..|.||..
T Consensus 360 QTmLFSATMte 370 (691)
T KOG0338|consen 360 QTMLFSATMTE 370 (691)
T ss_pred cceeehhhhHH
Confidence 35667778865
No 17
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.98 E-value=63 Score=31.54 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=46.8
Q ss_pred eEEEEEcCChhhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHhhchhccCCC---cCCCCCCcc
Q psy16349 158 RSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIP---TLKSQTLGV 234 (351)
Q Consensus 158 ~kVlVFa~~~e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~lrGLMkkk~P---~~K~GTv~~ 234 (351)
.+|.|-++..+++.+|.++|||+++-+ ++ +|+.+.++.++. +...| -.-.|.+
T Consensus 183 ~~I~VEv~tleea~~A~~~GaDiI~LD--------------n~-----~~e~l~~~v~~~---~~~~~~~~ieAsGgI-- 238 (273)
T PRK05848 183 AKIEIECESLEEAKNAMNAGADIVMCD--------------NM-----SVEEIKEVVAYR---NANYPHVLLEASGNI-- 238 (273)
T ss_pred ceEEEEeCCHHHHHHHHHcCCCEEEEC--------------CC-----CHHHHHHHHHHh---hccCCCeEEEEECCC--
Confidence 579999999999999999999988721 23 455555554441 22235 4456776
Q ss_pred CHHHHHHHHhcccEEEe
Q psy16349 235 DLIGIAKRLQTGIKYSM 251 (351)
Q Consensus 235 DI~~~V~~~k~gi~~r~ 251 (351)
++..+-+-.+.|+.+=+
T Consensus 239 t~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 239 TLENINAYAKSGVDAIS 255 (273)
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 56666666777776654
No 18
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=35.81 E-value=74 Score=32.14 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=34.6
Q ss_pred eEEEEEcCChhhHHHHHHcCCCeecc---HHHHHHHHcCCccCCCccEEEEchh
Q psy16349 158 RSIIAFCSQHETAAQLQDMGVALVGD---SDTIKGIERGLVTMPTFQFVICNPK 208 (351)
Q Consensus 158 ~kVlVFa~~~e~a~~AkeaGA~~VGg---~eLI~kI~~g~i~~~~fD~~IAtpd 208 (351)
-+|.+|+-+++..+.|++.||+++-. ++.++.+.. . ||.+|-|-.
T Consensus 191 a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~--~----~d~ii~tv~ 238 (339)
T COG1064 191 AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKE--I----ADAIIDTVG 238 (339)
T ss_pred CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHh--h----CcEEEECCC
Confidence 57899999988889999999997655 566666653 1 888877765
No 19
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=34.93 E-value=53 Score=29.36 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=33.0
Q ss_pred ceEEEEEcCChhhHHHHHHcCCCeeccHHHHHHHHcCCc
Q psy16349 157 DRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLV 195 (351)
Q Consensus 157 ~~kVlVFa~~~e~a~~AkeaGA~~VGg~eLI~kI~~g~i 195 (351)
...|+|.++|...+..|...||..+...+++..+.....
T Consensus 94 ~~~v~VVTSD~~iq~~~~~~GA~~iss~ef~~~l~~~~~ 132 (166)
T PF05991_consen 94 PRQVTVVTSDREIQRAARGRGAKRISSEEFLRELKAAKR 132 (166)
T ss_pred CCeEEEEeCCHHHHHHHhhCCCEEEcHHHHHHHHHHHHH
Confidence 478999999988888899999999999999988865543
No 20
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=33.51 E-value=1e+02 Score=29.70 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=17.3
Q ss_pred EEEEEcCChhhHHHHHHcCCCee
Q psy16349 159 SIIAFCSQHETAAQLQDMGVALV 181 (351)
Q Consensus 159 kVlVFa~~~e~a~~AkeaGA~~V 181 (351)
+.||=..+.+++..|.+.|||++
T Consensus 2 ~lLvSv~~~~EA~~a~~~gaDiI 24 (235)
T PF04476_consen 2 KLLVSVRNVEEAEEALAGGADII 24 (235)
T ss_pred ceeecCCCHHHHHHHHhCCCCEE
Confidence 34555566677889999999987
No 21
>PRK02227 hypothetical protein; Provisional
Probab=32.40 E-value=1.4e+02 Score=28.77 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.5
Q ss_pred EEEEEcCChhhHHHHHHcCCCee
Q psy16349 159 SIIAFCSQHETAAQLQDMGVALV 181 (351)
Q Consensus 159 kVlVFa~~~e~a~~AkeaGA~~V 181 (351)
+.||=..+.+++..|.++|||++
T Consensus 2 ~lLvSvr~~eEA~~Al~~GaDiI 24 (238)
T PRK02227 2 RLLVSVRNLEEALEALAGGADII 24 (238)
T ss_pred ceeeccCCHHHHHHHHhcCCCEE
Confidence 34555567777899999999877
No 22
>KOG1198|consensus
Probab=27.61 E-value=1e+02 Score=30.93 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=36.8
Q ss_pred ceEEEEEcCChhhHHHHHHcCCCeecc---HHHHHHHHc--CCccCCCccEEEE---chhhHHHhHHh
Q psy16349 157 DRSIIAFCSQHETAAQLQDMGVALVGD---SDTIKGIER--GLVTMPTFQFVIC---NPKILADLMRI 216 (351)
Q Consensus 157 ~~kVlVFa~~~e~a~~AkeaGA~~VGg---~eLI~kI~~--g~i~~~~fD~~IA---tpd~m~~L~~l 216 (351)
-.+|.+.|.. +..+.+++.||+.+-. ++.++++++ +. .||++|- .+.....+..+
T Consensus 183 ~~~v~t~~s~-e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~----~~DvVlD~vg~~~~~~~~~~l 245 (347)
T KOG1198|consen 183 AIKVVTACSK-EKLELVKKLGADEVVDYKDENVVELIKKYTGK----GVDVVLDCVGGSTLTKSLSCL 245 (347)
T ss_pred CcEEEEEccc-chHHHHHHcCCcEeecCCCHHHHHHHHhhcCC----CccEEEECCCCCccccchhhh
Confidence 3678888888 4578899999987754 567777776 44 4888663 33444444443
No 23
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=24.77 E-value=78 Score=30.60 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=42.4
Q ss_pred ceEEEEEcCChhhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh-hchhccCCCcCCCCCCcc-
Q psy16349 157 DRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI-RGLLKKRIPTLKSQTLGV- 234 (351)
Q Consensus 157 ~~kVlVFa~~~e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l-rGLMkkk~P~~K~GTv~~- 234 (351)
..+|.|=|++.+++.+|.++||||++-+- + .|+.+..+.+. ++.. |-.-.|.++.
T Consensus 178 ~~~Igvev~t~eea~~A~~~gaDyI~ld~---------~----------~~e~lk~~v~~~~~~i----pi~AsGGI~~~ 234 (265)
T TIGR00078 178 ALKIEVEVESLEEAEEAAEAGADIIMLDN---------M----------KPEEIKEAVQLLKGRV----LLEASGGITLD 234 (265)
T ss_pred CCeEEEEeCCHHHHHHHHHcCCCEEEECC---------C----------CHHHHHHHHHHhcCCC----cEEEECCCCHH
Confidence 45688888888999999999999997632 2 12444444332 2333 8888888762
Q ss_pred CHHHHHHHHhcccEE
Q psy16349 235 DLIGIAKRLQTGIKY 249 (351)
Q Consensus 235 DI~~~V~~~k~gi~~ 249 (351)
|+.+. ...|+.+
T Consensus 235 ni~~~---a~~Gvd~ 246 (265)
T TIGR00078 235 NLEEY---AETGVDV 246 (265)
T ss_pred HHHHH---HHcCCCE
Confidence 34444 3455433
No 24
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=24.27 E-value=1.6e+02 Score=23.77 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=35.8
Q ss_pred eEEEEEcCChhhHHHHHHcCCCeecc---HHHHHHHH---cCCccCCCccEEEEch---hhHHHhHHh
Q psy16349 158 RSIIAFCSQHETAAQLQDMGVALVGD---SDTIKGIE---RGLVTMPTFQFVICNP---KILADLMRI 216 (351)
Q Consensus 158 ~kVlVFa~~~e~a~~AkeaGA~~VGg---~eLI~kI~---~g~i~~~~fD~~IAtp---d~m~~L~~l 216 (351)
.+|.+++.+++..+.|++.||+.+-. .++.++|. .|. .+|.+|=.. +.+...-.+
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~----~~d~vid~~g~~~~~~~~~~~ 78 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGR----GVDVVIDCVGSGDTLQEAIKL 78 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTS----SEEEEEESSSSHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccc----cceEEEEecCcHHHHHHHHHH
Confidence 57888998888889999999987654 23555554 342 578775433 444444443
No 25
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=23.76 E-value=32 Score=24.70 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCCcceeecccccccCCHHHHHHHHHHh
Q psy16349 81 PEDDIYLQKDYKLRIFQFQEALAAIRET 108 (351)
Q Consensus 81 P~DdVy~~~~~~~~~ysl~EAi~~lr~~ 108 (351)
..||.++.+|-.-..+.++.|+.+|+.+
T Consensus 28 ~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 28 DHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp S-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 4489999999999999999999999864
No 26
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=23.74 E-value=37 Score=26.23 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=24.5
Q ss_pred CceeEEEEecCCCCCCCceEEEEEcCChhhHHHHHHcC
Q psy16349 140 DPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMG 177 (351)
Q Consensus 140 ~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~AkeaG 177 (351)
-+-.|.|.+|..| .+-+.|++.|+| + +......|
T Consensus 29 i~~~GrvmiPqeF--krGKsIiAV~EG-e-~~ilNsvG 62 (67)
T TIGR02922 29 VNESGRVMIPQEF--KRGKSIIAVCEG-E-ITILNSVG 62 (67)
T ss_pred ccccccEEcchHH--cCCCeEEEEEec-c-eeehhhhh
Confidence 3456889999999 556679999999 4 45444444
No 27
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.63 E-value=1.9e+02 Score=23.29 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.9
Q ss_pred CCccEEEEchhhHHHhHHhhchh
Q psy16349 198 PTFQFVICNPKILADLMRIRGLL 220 (351)
Q Consensus 198 ~~fD~~IAtpd~m~~L~~lrGLM 220 (351)
.+||.+|.+|.+.-.+..++..+
T Consensus 45 ~~~Diil~~Pqv~~~~~~i~~~~ 67 (96)
T cd05564 45 DDADVVLLGPQVRYMLDEVKKKA 67 (96)
T ss_pred CCCCEEEEChhHHHHHHHHHHHh
Confidence 37999999999988888886543
No 28
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=23.45 E-value=41 Score=26.33 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=23.9
Q ss_pred ceeEEEEecCCCCCCCceEEEEEcCChhhHHHHHHcC
Q psy16349 141 PWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMG 177 (351)
Q Consensus 141 ~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~AkeaG 177 (351)
.-.|.|.||-.| .+-+.|++.|+| + ++.....|
T Consensus 32 ~~~grv~iP~~F--r~GKsIiAVleG-e-~~iLnsvG 64 (71)
T PF09558_consen 32 SESGRVMIPQSF--RRGKSIIAVLEG-E-CKILNSVG 64 (71)
T ss_pred ccCccEEChHHH--cCCceEEEEEcC-c-eehhhhhh
Confidence 346789999999 555678999999 4 55554444
No 29
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.59 E-value=1.4e+02 Score=29.16 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=45.8
Q ss_pred eEEEEEcCChhhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh-hchhccCCCcCCCCCCccCH
Q psy16349 158 RSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI-RGLLKKRIPTLKSQTLGVDL 236 (351)
Q Consensus 158 ~kVlVFa~~~e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l-rGLMkkk~P~~K~GTv~~DI 236 (351)
.+|-|=|++.+++.+|.++||||++.+ .+ +|+.+.++.++ ++ +.|-.-.|.++ +
T Consensus 190 ~~I~VEv~tleea~eA~~~gaD~I~LD--------------~~-----~~e~l~~~v~~~~~----~i~leAsGGIt--~ 244 (277)
T PRK05742 190 KPVEVEVESLDELRQALAAGADIVMLD--------------EL-----SLDDMREAVRLTAG----RAKLEASGGIN--E 244 (277)
T ss_pred CeEEEEeCCHHHHHHHHHcCCCEEEEC--------------CC-----CHHHHHHHHHHhCC----CCcEEEECCCC--H
Confidence 468888999888999999999999542 11 56666666554 33 34888888766 3
Q ss_pred HHHHHHHhcccEEEe
Q psy16349 237 IGIAKRLQTGIKYSM 251 (351)
Q Consensus 237 ~~~V~~~k~gi~~r~ 251 (351)
..+-+-...|+.+=+
T Consensus 245 ~ni~~~a~tGvD~Is 259 (277)
T PRK05742 245 STLRVIAETGVDYIS 259 (277)
T ss_pred HHHHHHHHcCCCEEE
Confidence 333333456665544
No 30
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.35 E-value=92 Score=30.14 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=44.8
Q ss_pred ceEEEEEcCChhhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHhhchhccCCCcCCCCCCccCH
Q psy16349 157 DRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDL 236 (351)
Q Consensus 157 ~~kVlVFa~~~e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~lrGLMkkk~P~~K~GTv~~DI 236 (351)
..+|.|=|.+.+++++|.++||||++-+- + .|+.+..+..+ .+.+.|-.-.|.++ +
T Consensus 182 ~~~Igvev~s~eea~~A~~~gaDyI~ld~---------~----------~~e~l~~~~~~---~~~~ipi~AiGGI~--~ 237 (268)
T cd01572 182 TLKIEVEVETLEQLKEALEAGADIIMLDN---------M----------SPEELREAVAL---LKGRVLLEASGGIT--L 237 (268)
T ss_pred CCeEEEEECCHHHHHHHHHcCCCEEEECC---------c----------CHHHHHHHHHH---cCCCCcEEEECCCC--H
Confidence 44688999998999999999999997642 2 14544444433 22245888888876 3
Q ss_pred HHHHHHHhcccEEE
Q psy16349 237 IGIAKRLQTGIKYS 250 (351)
Q Consensus 237 ~~~V~~~k~gi~~r 250 (351)
..+-+-.+.|+.+=
T Consensus 238 ~ni~~~a~~Gvd~I 251 (268)
T cd01572 238 ENIRAYAETGVDYI 251 (268)
T ss_pred HHHHHHHHcCCCEE
Confidence 33333345665444
No 31
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.69 E-value=79 Score=24.92 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHH
Q psy16349 272 MSQEQLEDNLKRILAD 287 (351)
Q Consensus 272 m~~eqL~eNi~avl~~ 287 (351)
=++|||.+||-++|+.
T Consensus 59 et~eeLv~NIY~~i~E 74 (78)
T COG4844 59 ETPEELVENIYTFIEE 74 (78)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 3789999999998864
Done!