Query psy16349
Match_columns 351
No_of_seqs 158 out of 1090
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:05:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u42_A 50S ribosomal protein L 100.0 1.5E-58 5E-63 431.0 26.0 206 90-322 15-228 (229)
2 3qoy_A 50S ribosomal protein L 100.0 1.1E-55 3.7E-60 414.4 21.0 217 90-330 15-239 (242)
3 2wwq_5 50S ribosomal protein L 100.0 1.4E-54 4.8E-59 405.3 23.3 209 90-325 15-230 (234)
4 3bbo_D Ribosomal protein L1; l 100.0 3.7E-52 1.3E-56 405.3 15.6 210 90-326 129-345 (352)
5 2ftc_A Mitochondrial ribosomal 100.0 3.7E-49 1.3E-53 358.2 22.5 185 124-325 2-189 (189)
6 3j21_A 50S ribosomal protein L 100.0 2.5E-48 8.7E-53 359.3 16.2 198 96-320 6-215 (216)
7 2zkr_5 60S ribosomal protein L 100.0 3.3E-47 1.1E-51 351.0 18.2 193 97-320 5-212 (212)
8 1i2a_A 50S ribosomal protein L 100.0 6.2E-46 2.1E-50 344.0 19.0 193 97-319 5-211 (219)
9 1mzp_A 50S ribosomal protein L 100.0 2.5E-45 8.5E-50 339.5 20.5 195 98-320 8-216 (217)
10 3iz5_A 60S ribosomal protein L 100.0 8.3E-47 2.8E-51 349.1 -5.5 203 95-319 6-215 (216)
11 3o58_A L10A, 60S ribosomal pro 100.0 4.4E-46 1.5E-50 344.5 -14.0 203 96-319 7-216 (217)
12 2ov7_A 50S ribosomal protein L 100.0 6.1E-29 2.1E-33 214.7 16.8 123 90-322 14-136 (137)
13 1qap_A Quinolinic acid phospho 31.6 54 0.0019 30.8 5.1 67 159-249 210-276 (296)
14 1tvm_A PTS system, galactitol- 24.8 51 0.0018 26.2 3.2 48 156-210 20-80 (113)
15 3enp_A TP53RK-binding protein; 24.8 1.9E+02 0.0065 25.0 7.1 79 143-244 4-99 (177)
16 3hgl_A Effector protein hopab2 24.7 21 0.00071 27.7 0.7 53 168-235 11-64 (85)
17 2h6e_A ADH-4, D-arabinose 1-de 23.0 1.1E+02 0.0037 28.2 5.5 45 159-207 198-246 (344)
18 1x1o_A Nicotinate-nucleotide p 22.0 51 0.0017 30.9 3.0 26 159-184 198-223 (286)
19 1o4u_A Type II quinolic acid p 20.3 62 0.0021 30.4 3.2 27 158-184 194-220 (285)
No 1
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=1.5e-58 Score=430.98 Aligned_cols=206 Identities=21% Similarity=0.402 Sum_probs=197.4
Q ss_pred ccccccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhh
Q psy16349 90 DYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHET 169 (351)
Q Consensus 90 ~~~~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~ 169 (351)
+++.+.|+++|||++||+++ .++|+|||||+|+|+.+++|.+++|||+|.|||++ |+..+|||||++ +.
T Consensus 15 ~d~~k~y~~~eAi~~lk~~~--------~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~--gk~~kV~Vfa~~-~~ 83 (229)
T 3u42_A 15 VDPNKIYTIDEAAHLVKELA--------TAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGL--GKQVRVLAIAKG-EK 83 (229)
T ss_dssp SCTTCCBCHHHHHHHHHHHC--------CSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSC--STTSCEEEECCT-HH
T ss_pred cCccCCCCHHHHHHHHHHhC--------CCCCCccEEEEEEEccCCCCCCCceeEEEECCCCC--CCceEEEEecCh-Hh
Confidence 56678899999999999998 88999999999999999999999999999999999 999999999999 56
Q ss_pred HHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHH-h------hchhccCCCcCCCCCCccCHHHHHHH
Q psy16349 170 AAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMR-I------RGLLKKRIPTLKSQTLGVDLIGIAKR 242 (351)
Q Consensus 170 a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~-l------rGLMkkk~P~~K~GTv~~DI~~~V~~ 242 (351)
+++|++|||++|||+|||++|++||+ +||+||||||||+.|++ | |||| |||+.|||+.||.++|++
T Consensus 84 ~~eAk~aGAd~vG~~dLi~kIk~g~~---~fD~~iAtpd~m~~vg~~LG~iLGPrGlM----Pnpk~GTvt~dv~~~v~~ 156 (229)
T 3u42_A 84 IKEAEEAGADYVGGEEIIQKILDGWM---DFDAVVATPDVMGAVGSKLGRILGPRGLL----PNPKAGTVGFNIGEIIRE 156 (229)
T ss_dssp HHHHHHTTCSEEECTHHHHHHHTTCC---CCSEEEECGGGHHHHHHHHHHHHHHHTCC----CCGGGTCBSSCHHHHHHH
T ss_pred HHHHHhcCCceeCcHHHHHHHhcCCc---cccEEEEchHHHHHHHHhhcccccccccc----ccCCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999 99999999999999974 4 9999 999999999999999999
Q ss_pred Hhcc-cEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEecc
Q psy16349 243 LQTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDL 321 (351)
Q Consensus 243 ~k~g-i~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~ 321 (351)
++.| ++||+++ .|+||++||+++|++|||+|||.+++++|.+.+|..+ +|.||+++|||||||| |++||.
T Consensus 157 ~K~g~v~~r~dk------~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~--kg~~ik~v~lssTmGp-~i~id~ 227 (229)
T 3u42_A 157 IKAGRIEFRNDK------TGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGA--KGTFLRSVYVTTVMGP-SVRINP 227 (229)
T ss_dssp HHTTEEEEECCT------TSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTC--CSCSEEEEEEECSSSC-CEEBCT
T ss_pred HhCceEEEEeCC------CCeecccccCCCCCHHHHHHHHHHHHHHHHHhCcccc--CCCeEEEEEEECCCCc-CeEeCC
Confidence 9998 9999999 9999999999999999999999999999999999987 8999999999999999 999997
Q ss_pred C
Q psy16349 322 S 322 (351)
Q Consensus 322 ~ 322 (351)
.
T Consensus 228 ~ 228 (229)
T 3u42_A 228 H 228 (229)
T ss_dssp T
T ss_pred C
Confidence 5
No 2
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=1.1e-55 Score=414.39 Aligned_cols=217 Identities=21% Similarity=0.393 Sum_probs=202.1
Q ss_pred ccccccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhh
Q psy16349 90 DYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHET 169 (351)
Q Consensus 90 ~~~~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~ 169 (351)
....+.|+++|||+++++++++ ..++|+|||||+++|+.|++|.+++|||+|.|||++ |+..+|||||++ +.
T Consensus 15 ~~~~~~y~l~eAi~~~k~~~~~-----~~rkF~etVel~i~L~vDp~k~d~~vrg~V~LPh~~--gk~~kV~Vfa~~-~~ 86 (242)
T 3qoy_A 15 VDRNKRYTLEEAVDLLKKMEEV-----LQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGL--GKPIKVVVFAEG-EY 86 (242)
T ss_dssp SCTTCCBCHHHHHHHHHHHHHH-----HCCSSCCEEEEEEEESCCTTSGGGCCEEEEECSCCC--SSCCCEEEECCH-HH
T ss_pred ccccCccCHHHHHHHHHhhccc-----ccCCCCCcEEEEEEeccCCCCCCCccceEecCCCCC--CCCcEEEEEcCH-HH
Confidence 3457899999999999998821 125999999999999999988899999999999999 999999999999 45
Q ss_pred HHHHHHcCCCeeccHHHHHHH-HcCCccCCCccEEEEchhhHHHhHHh------hchhccCCCcCCCCCCccCHHHHHHH
Q psy16349 170 AAQLQDMGVALVGDSDTIKGI-ERGLVTMPTFQFVICNPKILADLMRI------RGLLKKRIPTLKSQTLGVDLIGIAKR 242 (351)
Q Consensus 170 a~~AkeaGA~~VGg~eLI~kI-~~g~i~~~~fD~~IAtpd~m~~L~~l------rGLMkkk~P~~K~GTv~~DI~~~V~~ 242 (351)
+++|++|||++||++|||++| ++|++ +||+|||||||||+|++| |||| |+|+.|||+.||.++|++
T Consensus 87 ~~eAk~aGad~vg~~dLi~ki~k~g~~---~fD~~iAtpd~m~~l~~LGriLGPrGlm----P~pk~gTvt~dv~~~V~~ 159 (242)
T 3qoy_A 87 AKKAEEAGADYVGGDELINKILKEEWT---DFDVAIATPEMMPKVAKLGRILGPRGLM----PSPKTGTVTTNVEQAIKD 159 (242)
T ss_dssp HHHHHHTTCSEEESHHHHHHHHHHTCC---CCSEEEECTTTHHHHGGGHHHHGGGTCS----CCGGGTCBCSCHHHHHHH
T ss_pred HHHHHHcCCCEECcHHHHHHHHhCCCc---cCCEEEECHHHHHHHHHHhHHhccccCC----CcccCCccchhHHHHHHH
Confidence 999999999999999999999 79998 899999999999999987 8888 999999999999999999
Q ss_pred Hhcc-cEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEecc
Q psy16349 243 LQTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDL 321 (351)
Q Consensus 243 ~k~g-i~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~ 321 (351)
+++| ++||+++ .|++|++||+++|+++||.|||.+++++|.+.+|.++ +|+||+++||+||||| |++||+
T Consensus 160 ~k~G~v~fr~~k------~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~--kg~~Ik~v~lkSTmGp-~i~i~~ 230 (242)
T 3qoy_A 160 AKRGRVEFKVDK------AGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGA--KGQYIKNMAVSLTMSP-SVKLDI 230 (242)
T ss_dssp HHTTEEEEECCT------TSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTC--CSCSEEEEEEEETTSC-CEEBCH
T ss_pred HhcCcEEEEecC------CcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCccc--CCceEEEEEEECCCCC-CEEEEh
Confidence 9998 9999999 9999999999999999999999999999999999876 7899999999999999 999999
Q ss_pred CCccCcccc
Q psy16349 322 SGLIEKPKA 330 (351)
Q Consensus 322 ~~~~~~~~~ 330 (351)
+.|+|..-.
T Consensus 231 ~~~~~~~~~ 239 (242)
T 3qoy_A 231 NEVLKKLQE 239 (242)
T ss_dssp HHHHHHHHH
T ss_pred hHhChhhhh
Confidence 999886543
No 3
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1.4e-54 Score=405.35 Aligned_cols=209 Identities=22% Similarity=0.366 Sum_probs=198.5
Q ss_pred ccccccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhh
Q psy16349 90 DYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHET 169 (351)
Q Consensus 90 ~~~~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~ 169 (351)
...++.|+++|||++|++++ .++|+|+|||+++|+.|+++.+++|||+|.|||++ |+..+|||||+++ .
T Consensus 15 ~~~~~~y~~~eAv~~lk~~~--------~~kF~etvel~i~L~vdp~k~dq~vrg~V~LPh~~--~k~~rV~Vfa~~~-~ 83 (234)
T 2wwq_5 15 VDATKQYDINEAIALLKELA--------TAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGT--GRSVRVAVFTQGA-N 83 (234)
T ss_dssp SCCSSEECHHHHHHHHHHTC--------CCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCC--SSCCCEEEECSSS-C
T ss_pred ccccCccCHHHHHHHHHHhc--------cCCCCceEEEEEEECCCCcccCcccceEEeCCCCC--CCCcEEEEEcCch-h
Confidence 35688999999999999887 78999999999999889988899999999999999 9999999999996 5
Q ss_pred HHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh------hchhccCCCcCCCCCCccCHHHHHHHH
Q psy16349 170 AAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI------RGLLKKRIPTLKSQTLGVDLIGIAKRL 243 (351)
Q Consensus 170 a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l------rGLMkkk~P~~K~GTv~~DI~~~V~~~ 243 (351)
+++|++|||++||++|||++|++|++ +||+|||||+||+.|++| |||| |+|+.|||+.||.++|+++
T Consensus 84 ~~~Ak~aGad~vg~edLi~kik~~~~---~fD~~iAtp~~m~~l~~LGkiLgprGlm----P~pk~gTvt~dv~~~V~~~ 156 (234)
T 2wwq_5 84 AEAAKAAGAELVGMEDLADQIKKGEM---NFDVVIASPDAMRVVGQLGQVLGPRGLM----PNPKVGTVTPNVAEAVKNA 156 (234)
T ss_dssp HHHHHHHTCSEECSHHHHHHHHHTCC---CSSEEEECHHHHHHTTSSCSCCCSSCCS----CCTTTTCBCSCSHHHHHHH
T ss_pred HHHHHHcCCCEEcHHHHHHHHHcCcc---cCCEEEECHHHHHHHHHHhhhhccCCCC----CCccCCCccccHHHHHHHH
Confidence 99999999999999999999999996 999999999999999998 8888 9999999999999999999
Q ss_pred hcc-cEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccC
Q psy16349 244 QTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLS 322 (351)
Q Consensus 244 k~g-i~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~ 322 (351)
++| ++||+++ .|++|++||+++|++|||.|||.+++++|.+.+|..+ +|+||+++||+||||| |++||+.
T Consensus 157 k~g~v~~r~~k------~~~i~v~VG~~~f~~e~L~eNi~a~i~~l~~~~p~~~--kg~~Ik~v~lksTmgp-~i~id~~ 227 (234)
T 2wwq_5 157 KAGQVRYRNDK------NGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQA--KGVYIKKVSISTTMGA-GVAVDQA 227 (234)
T ss_dssp HHHEEEECCSS------SCEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSC--CSCCEEEEEEEESSSC-EEEESSS
T ss_pred HcCeeEEEecC------CcEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCcccc--cCCeEEEEEEECCCCC-CEEEehH
Confidence 999 8999999 9999999999999999999999999999999999987 8899999999999999 9999987
Q ss_pred Ccc
Q psy16349 323 GLI 325 (351)
Q Consensus 323 ~~~ 325 (351)
.+.
T Consensus 228 ~~~ 230 (234)
T 2wwq_5 228 GLS 230 (234)
T ss_dssp CCC
T ss_pred Hhh
Confidence 653
No 4
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.7e-52 Score=405.26 Aligned_cols=210 Identities=18% Similarity=0.330 Sum_probs=197.9
Q ss_pred ccccccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhh
Q psy16349 90 DYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHET 169 (351)
Q Consensus 90 ~~~~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~ 169 (351)
..+.+.|++.|||++++++. .++|+|+|||+++|+.|+++.+++|||+|.|||++ |+..+|||||+++ .
T Consensus 129 ~d~~~~Y~l~EAi~llK~~~--------~~KFdETVEl~I~L~vDpkk~dq~vRGtV~LPhgt--gk~~kVcVfa~ge-~ 197 (352)
T 3bbo_D 129 REIKQEYDLKTALSLMKQMS--------STKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGT--GKTVKIAVLAQGD-K 197 (352)
T ss_dssp CCSSSCCCTTTTHHHHSTTC--------CSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTS--SSSSCEEEECCTT-T
T ss_pred ccccCCCCHHHHHHHHHhcc--------ccCCCceEEEEEEeCCCCcccccccceeecCCCCC--CCccEEEEEeCch-h
Confidence 35678999999999999987 88999999999999889988899999999999999 9999999999995 5
Q ss_pred HHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh------hchhccCCCcCCCCCCccCHHHHHHHH
Q psy16349 170 AAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI------RGLLKKRIPTLKSQTLGVDLIGIAKRL 243 (351)
Q Consensus 170 a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l------rGLMkkk~P~~K~GTv~~DI~~~V~~~ 243 (351)
+++|+++||++||++||+++|++|++ +||+||||||||++|++| |||| |+|+.|||+.||.++|+++
T Consensus 198 ~eeAk~AGAdvVG~edLikkIKkg~~---dFD~fIAtpdmM~~lgrLGkiLGPRGlM----PnPk~GTVt~Dva~aV~e~ 270 (352)
T 3bbo_D 198 IDEAKAAGADIVGGEELIEQIKGGFM---DFDKLIATSDMMAKVASLGRILGPRGLM----PTPKAGTVTPNVAQAVEEF 270 (352)
T ss_dssp THHHHTTTCSEEECTTTHHHHTTTCC---CCSEEEECSSSHHHHGGGGGTTTTTTCS----CCTTTTCBSSCHHHHHTTT
T ss_pred HHHHHHcCCCccCHHHHHHHHHhchh---hcCEEEECHHHHHHHHhhcccccccCCC----CCCcCCcccccHHHHHHHH
Confidence 89999999999999999999999998 999999999999999998 7788 9999999999999999999
Q ss_pred hcc-cEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccC
Q psy16349 244 QTG-IKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLS 322 (351)
Q Consensus 244 k~g-i~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~ 322 (351)
++| ++||+++ .|+||++||+++|++|||.|||.++++.|.+.+|+.+ +|+||+++||+||||| |++|+..
T Consensus 271 K~G~v~fR~dK------~g~ihv~VGk~sfs~EqL~ENI~Avi~~L~k~kP~~~--KG~yIksv~LkSTMGP-gi~I~~~ 341 (352)
T 3bbo_D 271 KKGKVEFRVDK------TGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGA--KGVYWKSAHISSSMGP-SIRLNIR 341 (352)
T ss_dssp TTCCEEEECCS------SCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTC--CSCSEEEEECCBSSSC-CCEECTT
T ss_pred HcCeeEEEeCC------CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccc--cCceEEEEEEECCCCC-CEEEEhh
Confidence 999 8999999 9999999999999999999999999999999999987 8899999999999999 9999987
Q ss_pred CccC
Q psy16349 323 GLIE 326 (351)
Q Consensus 323 ~~~~ 326 (351)
.++.
T Consensus 342 ~l~d 345 (352)
T 3bbo_D 342 EMLD 345 (352)
T ss_dssp C---
T ss_pred hccc
Confidence 7654
No 5
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=3.7e-49 Score=358.21 Aligned_cols=185 Identities=21% Similarity=0.418 Sum_probs=172.0
Q ss_pred EEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCce-EEEEEcCChhhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccE
Q psy16349 124 TVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDR-SIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQF 202 (351)
Q Consensus 124 sveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~-kVlVFa~~~e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~ 202 (351)
.|||+|.|.. +|..+++||+|.|||++ ++.. +|||||++++.+++|++|||++||++|||++|++||+ +||+
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~--~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~~~---~fD~ 74 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPF--ASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEI---VADF 74 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCC--CCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcCCc---cCCE
Confidence 5899998654 36788889999999998 6555 9999999965689999999999999999999999998 9999
Q ss_pred EEEchhhHHHhHHhhchhccCCCcCCCCCCccCHHHHHHHHhcccEEEeecCCCCCCcc--eEEEEeeCCCCCHHHHHHH
Q psy16349 203 VICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFG--YSDFHIGRLDMSQEQLEDN 280 (351)
Q Consensus 203 ~IAtpd~m~~L~~lrGLMkkk~P~~K~GTv~~DI~~~V~~~k~gi~~r~~k~~~~~~~G--~I~v~IGkl~m~~eqL~eN 280 (351)
|||||+||++|++|.|.|+.|||+|+.|||+.|+.++|+++++|.+||+++ .| ++|++||+++|++|||.||
T Consensus 75 ~iAtp~~m~~l~~l~~~Lg~KmP~pk~gTvt~dv~~~v~~~k~g~~~r~~k------~~~~~i~v~VG~~~~~~e~L~eN 148 (189)
T 2ftc_A 75 YVAVPEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNGHEIKVDE------ERENFLQTKIATLDMSSDQIAAN 148 (189)
T ss_pred EEECHHHHHHHHHhhccccCCCCcccCCCccccHHHHHHHHhcceEEEecc------CCCcEEEEEEECCCCCHHHHHHH
Confidence 999999999999997777777899999999999999999999999999999 88 9999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccCCcc
Q psy16349 281 LKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSGLI 325 (351)
Q Consensus 281 i~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~~~~ 325 (351)
|.+++++|.+++|+.+ |+||++++||||||| |++||+++++
T Consensus 149 i~a~i~~l~~~~p~~~---g~~ik~v~lssTmgp-~i~i~~~~l~ 189 (189)
T 2ftc_A 149 LQAVINEVCRHRPLNL---GPFVVRAFLRSSTSE-GLLLKIDPLL 189 (189)
T ss_pred HHHHHHHHHHhCchhc---CccEEEEEEECCCCC-CEEEehhhcC
Confidence 9999999999999773 799999999999999 9999999875
No 6
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-48 Score=359.31 Aligned_cols=198 Identities=16% Similarity=0.292 Sum_probs=181.3
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeC-CCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHH
Q psy16349 96 FQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTH-QKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQ 174 (351)
Q Consensus 96 ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~-~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~Ak 174 (351)
-++.|||+.+++.+ +.++|+|||||+++|+ .|++|.+++|||+|.|||++ |+..+|||||++ +.+++|+
T Consensus 6 ~~~~eav~~~~~~~-------~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~--~k~~kV~Vf~~~-~~~~~Ak 75 (216)
T 3j21_A 6 QKIVKAVKEAKARA-------KPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGR--GKDVKIAVIADG-AVAEAAR 75 (216)
T ss_dssp SSCCCCTTTTCCCC-------CCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCC--SSCCCEEECCCS-HHHHHHH
T ss_pred HHHHHHHHHHHHhC-------cccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCC--CCCcEEEEECCH-HHHHHHH
Confidence 35678999998866 4689999999999998 79988899999999999999 999999999999 5699999
Q ss_pred HcCCCeeccHHHHHHHHcCCc----cCCCccEEEEchhhHHHhHH-h------hchhccCCCcCCCCCCccCHHHHHHHH
Q psy16349 175 DMGVALVGDSDTIKGIERGLV----TMPTFQFVICNPKILADLMR-I------RGLLKKRIPTLKSQTLGVDLIGIAKRL 243 (351)
Q Consensus 175 eaGA~~VGg~eLI~kI~~g~i----~~~~fD~~IAtpd~m~~L~~-l------rGLMkkk~P~~K~GTv~~DI~~~V~~~ 243 (351)
+|||+++|++|| ++|.+++. .+.+||+|||+|+||+.|++ | ||+| |+|++||+ .|+.++|+++
T Consensus 76 ~aGad~vg~e~L-~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~Lgprgkm----P~pk~gtv-~dv~~~v~~~ 149 (216)
T 3j21_A 76 KLGLDVISSAEL-EEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKM----PVVVPPTL-TDLTPIVEKL 149 (216)
T ss_dssp HHTCCCCCTTHH-HHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSS----CCTTTTCB-CSHHHHHHHH
T ss_pred hcCCCccCHHHH-HHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCcc----CCCcCCcH-HHHHHHHHHH
Confidence 999999999997 88877652 45699999999999999998 4 6666 99999999 9999999999
Q ss_pred hcccEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEec
Q psy16349 244 QTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLD 320 (351)
Q Consensus 244 k~gi~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~ 320 (351)
+++++||+++ .|++|++||+++|++|||.|||.++++.|.+.+|.++ +||+++||+||||| |++|+
T Consensus 150 k~~v~~r~~k------~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~----k~Iksi~lksTmgp-~i~i~ 215 (216)
T 3j21_A 150 KKTVRIQLKN------NPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGE----SQVKSVYVKTTMGP-AVKIE 215 (216)
T ss_dssp TCEEEEEEET------TTEEECCCEESSSCHHHHHHHHHHHHHHHHHSCCCSS----CSEEEEEEEESSSC-CEECC
T ss_pred HhhceeecCC------CCEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccccc----cceEEEEEECCCCC-CEEcc
Confidence 9999999999 9999999999999999999999999999999999753 59999999999999 99986
No 7
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.3e-47 Score=350.97 Aligned_cols=193 Identities=16% Similarity=0.281 Sum_probs=177.9
Q ss_pred CHHHHHH-HHHHhCCCCCCCCCCccceeEEEEEEEe-CCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHH
Q psy16349 97 QFQEALA-AIRETHHPTMYNLPRAFIGATVEISTTT-HQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQ 174 (351)
Q Consensus 97 sl~EAi~-~lr~~~~p~~~~~p~~~f~esveL~m~L-~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~Ak 174 (351)
+++|||+ ++++.. .++|+|||||+++| +.++++.++++||+|.|||++ |+..+|||||+++ .+++|+
T Consensus 5 ~l~eAv~~llk~~~--------~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~--~k~~~V~Vf~~~~-~~~~A~ 73 (212)
T 2zkr_5 5 EIENAVSRALEDAP--------ERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGT--GQETTIVVFAEGE-TALRAE 73 (212)
T ss_dssp THHHHHHHHHHTSC--------CCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCC--SSCCCEEEECCHH-HHHHHH
T ss_pred HHHHHHHHHHHhcc--------cCCCCceEEEEEEeCCCCCCcccccCceEEECCCCC--CCCcEEEEEcCch-hHHHHH
Confidence 5799999 777754 88999999999999 679987789999999999999 8999999999996 599999
Q ss_pred HcCCCeeccHHHHHHHHc------CCccCCCccEEEEchhhHHHhHH-h------hchhccCCCcCCCCCCccCHHHHHH
Q psy16349 175 DMGVALVGDSDTIKGIER------GLVTMPTFQFVICNPKILADLMR-I------RGLLKKRIPTLKSQTLGVDLIGIAK 241 (351)
Q Consensus 175 eaGA~~VGg~eLI~kI~~------g~i~~~~fD~~IAtpd~m~~L~~-l------rGLMkkk~P~~K~GTv~~DI~~~V~ 241 (351)
++||+++|++|| ++|++ |+ +.+||+|||||+||+.|++ | |||| |+|+.| +.|+.++|+
T Consensus 74 ~aGa~~vg~~~L-~ki~~~kk~~k~~--~~~fD~~lA~~~~m~~l~~~LGk~Lgprgkm----P~pk~g--t~dv~~~i~ 144 (212)
T 2zkr_5 74 EVADDVLDEDEL-EELGGDDDAAKDL--ADDTDFFIAEKGLMQDIGRYLGTVLGPRGKM----PEPLDP--DDDVVEVIE 144 (212)
T ss_dssp HHTSCCCCHHHH-HHHTTCHHHHHHH--HHHCSEEEECTTTHHHHHHHTHHHHHHHTCC----EEECCS--SSCCHHHHH
T ss_pred hcCCCEeCHHHH-HHHHhhHHhhhcc--cccCCEEEECHHHHHHHHHHHhhhccccCCc----CcccCC--CcCHHHHHH
Confidence 999999999999 99987 55 1389999999999999999 5 7777 999999 699999999
Q ss_pred HHhcccEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEec
Q psy16349 242 RLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLD 320 (351)
Q Consensus 242 ~~k~gi~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~ 320 (351)
++++|++||+++ .|++|++||+++|++|||.|||.+++++|.+.+|.. ++||+++||+||||| |++|+
T Consensus 145 ~~k~~v~~r~~k------~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~----~~~ik~v~lksTmgp-~i~i~ 212 (212)
T 2zkr_5 145 RMKNTVQLRSGE------RRTFHTRVGAEDMSAENIADNIDVILRRLHADLEKG----PLNIDTVYVKTTMGP-AMEVA 212 (212)
T ss_dssp HHHTEEECCCSS------SSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCCC----TTTEEEEEEEESSSC-CEEC-
T ss_pred HHHcceEEEecC------CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccc----cccEEEEEEECCCCC-CEECC
Confidence 999999999999 999999999999999999999999999999999965 389999999999999 99875
No 8
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=6.2e-46 Score=343.98 Aligned_cols=193 Identities=16% Similarity=0.237 Sum_probs=175.7
Q ss_pred CHHHHHH-HHHHhCCCCCCCCCCccceeEEEEEEEe-CCCcCCCC-CceeEEEEecCCCCCCCceEEEEEcCChhhHHHH
Q psy16349 97 QFQEALA-AIRETHHPTMYNLPRAFIGATVEISTTT-HQKKVKYM-DPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQL 173 (351)
Q Consensus 97 sl~EAi~-~lr~~~~p~~~~~p~~~f~esveL~m~L-~~k~~K~~-~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~A 173 (351)
.+.|||+ ++++.. .++|+|||||+++| +.+++ .+ ++|||+|.|||++ |+..+|||||+++ .+++|
T Consensus 5 ~l~eAv~~llk~~~--------~~kf~etVel~i~LK~~dp~-~d~q~vrg~v~LPh~~--~k~~~V~Vf~~~~-~~~~A 72 (219)
T 1i2a_A 5 ALLQAVKEARELAK--------PRNFTQSFEFIATLKEIDMR-KPENRIKTEVVLPHGR--GKEAKIAVIGTGD-LAKQA 72 (219)
T ss_dssp HHHHHHHHHHHHSC--------CCSSCCEEEEEEEESSCCTT-SGGGCCEEEEECTTCC--SSCCCEEEECCHH-HHHHH
T ss_pred HHHHHHHHHHHhcc--------cCCCCceEEEEEEecccCCc-ccccccceEEecCCCC--CCCcEEEEEcCch-hHHHH
Confidence 3689999 777654 88999999999999 67887 67 7999999999999 8999999999996 59999
Q ss_pred HHcCCCeeccHHHHHHHHcCC----ccCCCccEEEEchhhHHHhHH-h------hchhccCCCcCCCCCCccCHHHHHHH
Q psy16349 174 QDMGVALVGDSDTIKGIERGL----VTMPTFQFVICNPKILADLMR-I------RGLLKKRIPTLKSQTLGVDLIGIAKR 242 (351)
Q Consensus 174 keaGA~~VGg~eLI~kI~~g~----i~~~~fD~~IAtpd~m~~L~~-l------rGLMkkk~P~~K~GTv~~DI~~~V~~ 242 (351)
+++||++||++|| ++|++++ -.+.+||+|||||+||+.|++ | |||| |+|+.| +.|+.++|++
T Consensus 73 ~~aGa~~vg~~~L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~Lgprgkm----P~pk~g--t~dv~~~v~~ 145 (219)
T 1i2a_A 73 EELGLTVIRKEEI-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKM----PKPVPA--NANIKPLVER 145 (219)
T ss_dssp HHTTCEEECHHHH-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCC----CEEECT--TCCCHHHHHH
T ss_pred HHCCCCEEcHHHH-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCC----CcccCC--CccHHHHHHH
Confidence 9999999999999 9998753 122489999999999999999 5 7777 999999 6999999999
Q ss_pred HhcccEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEe
Q psy16349 243 LQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKL 319 (351)
Q Consensus 243 ~k~gi~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I 319 (351)
+++|++||+++ .|++|++||+++|++|||.|||.+++++|.+.+|.+ .+||+++||+||||| |++|
T Consensus 146 ~k~~v~~r~~k------~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~----~~~ik~v~lksTmgp-~i~i 211 (219)
T 1i2a_A 146 LKKTVVINTRD------KPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKG----LYHIKDAYVKLTMGP-AVKV 211 (219)
T ss_dssp HHTEEEEECTT------SSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTG----GGGEEEEEEEETTSC-CEEC
T ss_pred HhcceEEEecC------CCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCCcc----ccceEEEEEECCCCC-CEEe
Confidence 99999999998 999999999999999999999999999999999965 379999999999999 9986
No 9
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=2.5e-45 Score=339.51 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=176.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEe-CCCcCCCC-CceeEEEEecCCCCCCCceEEEEEcCChhhHHHHHH
Q psy16349 98 FQEALAAIRETHHPTMYNLPRAFIGATVEISTTT-HQKKVKYM-DPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQD 175 (351)
Q Consensus 98 l~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L-~~k~~K~~-~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~Ake 175 (351)
+.+||+.|.+.+ ..+.++|+|||||+++| +.+++ .+ +++||+|.|||++ |+..+|||||+++ .+++|++
T Consensus 8 l~~Av~~ll~~~-----~~~~~kf~etvel~i~LK~~dp~-~d~q~~rg~v~LPh~~--~k~~~V~Vf~~~~-~~~~A~~ 78 (217)
T 1mzp_A 8 LIEALKLALSTE-----YNVKRNFTQSVEIILTFKGIDMK-KGDLKLREIVPLPKQP--SKAKRVLVVPSSE-QLEYAKK 78 (217)
T ss_dssp HHHHHHHHHSTT-----TCCCCSSCCEEEEEEEESSCCGG-GTTTCCEEEEECSSCC--SSCCCEEEECCHH-HHHHHHH
T ss_pred HHHHHHHHHhhc-----cccccCCCccEEEEEEecCCCCc-ccccccceeecCCCCC--CCCcEEEEEcCch-hHHHHHh
Confidence 589999998753 23578999999999999 66887 67 8999999999999 8999999999996 5999999
Q ss_pred cCCC-eeccHHHHHHHHcCC----ccCCCccEEEEchhhHHHhHH-h------hchhccCCCcCCCCCCccCHHHHHHHH
Q psy16349 176 MGVA-LVGDSDTIKGIERGL----VTMPTFQFVICNPKILADLMR-I------RGLLKKRIPTLKSQTLGVDLIGIAKRL 243 (351)
Q Consensus 176 aGA~-~VGg~eLI~kI~~g~----i~~~~fD~~IAtpd~m~~L~~-l------rGLMkkk~P~~K~GTv~~DI~~~V~~~ 243 (351)
+||+ ++|++|| ++|++++ -.+.+||+|||||+||+.|++ | |||| |+|+.| +.|+.++|+++
T Consensus 79 aGad~~vg~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~Lgprgkm----P~p~~g--t~dv~~~v~~~ 151 (217)
T 1mzp_A 79 ASPKVVITREEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKF----PTPLPN--TADISEYINRF 151 (217)
T ss_dssp TCCSEECCHHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCC----EEECCS--SSCCHHHHHHH
T ss_pred cCCCeeeCHHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCC----CcccCC--CccHHHHHHHH
Confidence 9998 9999999 9998732 112389999999999999999 5 7777 999999 69999999999
Q ss_pred hcccEEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEec
Q psy16349 244 QTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLD 320 (351)
Q Consensus 244 k~gi~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~ 320 (351)
++|++||+++ .|++|++||+++|++|||.|||.+++++|.+.+|+ + +||+++||+||||| |++||
T Consensus 152 k~~v~~r~~k------~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~-~----~~ik~v~lksTmgp-~i~i~ 216 (217)
T 1mzp_A 152 KRSVLVKTKD------QPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV-E----TNLRNIYVKTTMGK-AVKVK 216 (217)
T ss_dssp HTEEEEECSS------SSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC-T----TTEEEEEEEETTSC-CEECC
T ss_pred hcceEEEecC------CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc-c----hheEEEEEECCCCC-CeeCC
Confidence 9999999999 99999999999999999999999999999999995 4 89999999999999 99986
No 10
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=8.3e-47 Score=349.11 Aligned_cols=203 Identities=15% Similarity=0.197 Sum_probs=182.3
Q ss_pred cCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEe-CCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHH
Q psy16349 95 IFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTT-HQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQL 173 (351)
Q Consensus 95 ~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L-~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~A 173 (351)
..++.|||+.+++.+ +.+.++|+|||||+++| +.|++ .+++|||+|.|||++ |+..+|||||++ +.+++|
T Consensus 6 ~~~l~eav~~~~~~~-----~~~~~kF~etvel~i~Lk~idp~-kd~~~rg~v~LPh~~--~k~~kV~Vf~~~-~~~~~A 76 (216)
T 3iz5_A 6 SDAVKDAITQIVGEA-----REKKRKFTETVELQIGLKNYDPQ-KDKRFSGSVKLPHIP--RPKMRVCMLGDA-QHVDQA 76 (216)
T ss_dssp SCSSCEECTTTSSSS-----TTHHHHCCCSSCCEEEEEEECCC-CSSSTTCCEECCBCS--SCCCCCCCEEEE-CCTHHH
T ss_pred HHHHHHHHHHHHHhc-----cccccCCCccEEEEEEecccCcc-cccccceeecCCCCC--CCCcEEEEEcCh-HhHHHH
Confidence 345678888887654 23578999999999999 56886 599999999999999 899999999998 558999
Q ss_pred HHcCCCeeccHHHHHHHHcCCc---cCCCccEEEEchhhHHHhHHh--hchhcc-CCCcCCCCCCccCHHHHHHHHhccc
Q psy16349 174 QDMGVALVGDSDTIKGIERGLV---TMPTFQFVICNPKILADLMRI--RGLLKK-RIPTLKSQTLGVDLIGIAKRLQTGI 247 (351)
Q Consensus 174 keaGA~~VGg~eLI~kI~~g~i---~~~~fD~~IAtpd~m~~L~~l--rGLMkk-k~P~~K~GTv~~DI~~~V~~~k~gi 247 (351)
+++||+++|++||+++|++|+. ++.+||+|||+|+||++|+++ +|||++ +||+|+++ +.|+.++|+++++++
T Consensus 77 ~~aGa~~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~--t~dv~~~v~~~k~~v 154 (216)
T 3iz5_A 77 EKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSH--QESLEAKVNETKATV 154 (216)
T ss_dssp HHHHHTCSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSC--HHHHHHHHHHTBCCE
T ss_pred HhccCCEeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCC--cccHHHHHHHHHhhh
Confidence 9999999999999999999874 456999999999999999998 777744 77999985 599999999999999
Q ss_pred EEEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEe
Q psy16349 248 KYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKL 319 (351)
Q Consensus 248 ~~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I 319 (351)
+||+++ .|++|++||+++|++|||.|||.+++++|.+.+|+ +|+||+++||+||||| |++|
T Consensus 155 ~~r~~k------~~~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~----~~~~Iksv~iksTmgp-~i~i 215 (216)
T 3iz5_A 155 KFQLKK------VLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKK----NWQNVRCLYVKSTMGK-RVRV 215 (216)
T ss_dssp EECTTS------EEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCSSC----CSCSCSEEEECCSSCC-CEEE
T ss_pred heeCCC------ccEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccC----CCceEEEEEEECCCCC-CEec
Confidence 999998 99999999999999999999999999999999984 5789999999999999 9986
No 11
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=4.4e-46 Score=344.47 Aligned_cols=203 Identities=16% Similarity=0.202 Sum_probs=181.2
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEe-CCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhhHHHHH
Q psy16349 96 FQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTT-HQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQ 174 (351)
Q Consensus 96 ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L-~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~Ak 174 (351)
-.+.+||+.+.+.+ -+.+.++|+|||||+++| +.|+++ ++++||+|.|||++ |+..+|||||++ +.+++|+
T Consensus 7 ~~~~~av~~~l~~~----~~~~~~kf~etVel~i~Lk~idp~k-d~~~rg~v~LPh~~--~k~~~V~Vf~~~-~~~~~Ak 78 (217)
T 3o58_A 7 SQVREHVKELLKYS----NETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCP--RPNMSICIFGDA-FDVDRAK 78 (217)
T ss_dssp TTHHHHTTSSSSCC----SSSSCCSSCCCCCCCCCSCCSCSSS-SSCCSCCCSCCCCC--SSCCCCCCCSST-TSSGGGT
T ss_pred HHHHHHHHHHHHhc----ccccccCCCccEEEEEEecccCCCC-CCcCCeEEECCCCC--CCCcEEEEEcCc-HhHHHHH
Confidence 46789998887653 113689999999999999 679975 99999999999999 899999999999 4589999
Q ss_pred HcCCCeeccHHHHHHHHcCCc---cCCCccEEEEchhhHHHhHHh--hchhcc-CCCcCCCCCCccCHHHHHHHHhcccE
Q psy16349 175 DMGVALVGDSDTIKGIERGLV---TMPTFQFVICNPKILADLMRI--RGLLKK-RIPTLKSQTLGVDLIGIAKRLQTGIK 248 (351)
Q Consensus 175 eaGA~~VGg~eLI~kI~~g~i---~~~~fD~~IAtpd~m~~L~~l--rGLMkk-k~P~~K~GTv~~DI~~~V~~~k~gi~ 248 (351)
++||+++|++||+++|+++++ ++.+||+|||+|+||+.|+++ +|||++ +||+|++ ++.|+.++|++++++++
T Consensus 79 ~aGa~~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~~--vt~dv~~~v~~~k~~v~ 156 (217)
T 3o58_A 79 SCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS--HNDDLYGKVTDVRSTIK 156 (217)
T ss_dssp TTTCCCCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCSC--TTTCSSSGGGGTTSCCS
T ss_pred HcCCCEeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCcC--CchhHHHHHHHHhceEE
Confidence 999999999999999998864 235999999999999999995 667743 7799995 88999999999999999
Q ss_pred EEeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEe
Q psy16349 249 YSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKL 319 (351)
Q Consensus 249 ~r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I 319 (351)
||+++ .|++|++||+++|++|||.|||.++++.|.+.+|+ .++||+++||+||||| |++|
T Consensus 157 ~r~~k------~~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk----~~~~iksi~lksTmgp-~i~i 216 (217)
T 3o58_A 157 FQLKK------VLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKK----NWQNVGSLVVKSSMGP-AFRL 216 (217)
T ss_dssp CCCCS------SSCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSS----CSCCCSCCCCCSSSSC-SCCC
T ss_pred EEeCC------CCEEEEeeccCCCCHHHHHHHHHHHHHHHHHhccc----CCceEEEEEEECCCCC-CEec
Confidence 99999 99999999999999999999999999999999984 4689999999999999 8865
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.96 E-value=6.1e-29 Score=214.74 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=115.1
Q ss_pred ccccccCCHHHHHHHHHHhCCCCCCCCCCccceeEEEEEEEeCCCcCCCCCceeEEEEecCCCCCCCceEEEEEcCChhh
Q psy16349 90 DYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHET 169 (351)
Q Consensus 90 ~~~~~~ysl~EAi~~lr~~~~p~~~~~p~~~f~esveL~m~L~~k~~K~~~~~rg~V~LPh~~~~gk~~kVlVFa~~~e~ 169 (351)
+...+.|++.|||+++++.. .++|+|||||+++|+.|+++.+++|||+|.|||+
T Consensus 14 v~~~~~y~~~eAi~~~k~~~--------~~kF~EtVel~i~L~vDprk~dq~vrgtV~LP~g------------------ 67 (137)
T 2ov7_A 14 VDPNKIYTIDEAAHLVKELA--------TAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG------------------ 67 (137)
T ss_dssp SCTTCCBCHHHHHHHHHHTC--------CSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS------------------
T ss_pred cCcccccCHHHHHHHHHhcc--------cCCCCccEEEEEEeCCCCccccceeeEEEEcCCC------------------
Confidence 34567899999999999766 8999999999999999998889999999999998
Q ss_pred HHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHhhchhccCCCcCCCCCCccCHHHHHHHHhcccEE
Q psy16349 170 AAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKY 249 (351)
Q Consensus 170 a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~lrGLMkkk~P~~K~GTv~~DI~~~V~~~k~gi~~ 249 (351)
+.++|
T Consensus 68 ---------------------------------------------------------------------------g~v~f 72 (137)
T 2ov7_A 68 ---------------------------------------------------------------------------GRIEF 72 (137)
T ss_dssp ---------------------------------------------------------------------------CEEEE
T ss_pred ---------------------------------------------------------------------------CeEEE
Confidence 44999
Q ss_pred EeecCCCCCCcceEEEEeeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEEEcCCCCCceEeccC
Q psy16349 250 SMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLS 322 (351)
Q Consensus 250 r~~k~~~~~~~G~I~v~IGkl~m~~eqL~eNi~avl~~V~~~~p~~~~~kg~fI~~v~LsSTmGpe~i~I~~~ 322 (351)
|+++ .|+||++||+++|++|||.|||.+++++|.+.+|+.+ +|+||+++||+||||| |++||+.
T Consensus 73 r~dk------~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~--kg~~ik~v~issTMGp-~i~id~~ 136 (137)
T 2ov7_A 73 RNDK------TGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGA--KGTFLRSVYVTTTMGP-SVRINPH 136 (137)
T ss_dssp ECCT------TSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSC--CSCSEEEEEEEETTSC-CEEBCTT
T ss_pred EECC------CCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccc--cCceEEEEEEECCCCC-CEEecCC
Confidence 9999 9999999999999999999999999999999999988 8999999999999999 9999874
No 13
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=31.58 E-value=54 Score=30.83 Aligned_cols=67 Identities=7% Similarity=0.113 Sum_probs=42.9
Q ss_pred EEEEEcCChhhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHhhchhccCCCcCCCCCCccCHHH
Q psy16349 159 SIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIG 238 (351)
Q Consensus 159 kVlVFa~~~e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~lrGLMkkk~P~~K~GTv~~DI~~ 238 (351)
+|.|-++..+++.+|.++||++++-+. .+++.+..+.+. +..+.|..-.|.+ |...
T Consensus 210 kI~vev~tlee~~eA~~aGaD~I~ld~-------------------~~~e~l~~~v~~---~~~~~~I~ASGGI--t~~~ 265 (296)
T 1qap_A 210 PVEVEVENLDELDDALKAGADIIMLDN-------------------FNTDQMREAVKR---VNGQARLEVSGNV--TAET 265 (296)
T ss_dssp CEEEEESSHHHHHHHHHTTCSEEEESS-------------------CCHHHHHHHHHT---TCTTCCEEECCCS--CHHH
T ss_pred cEEEEeCCHHHHHHHHHcCCCEEEECC-------------------CCHHHHHHHHHH---hCCCCeEEEECCC--CHHH
Confidence 455666666778899999999987642 345555555443 2223488888886 5555
Q ss_pred HHHHHhcccEE
Q psy16349 239 IAKRLQTGIKY 249 (351)
Q Consensus 239 ~V~~~k~gi~~ 249 (351)
+-+-...|+.+
T Consensus 266 i~~~a~~GvD~ 276 (296)
T 1qap_A 266 LREFAETGVDF 276 (296)
T ss_dssp HHHHHHTTCSE
T ss_pred HHHHHHcCCCE
Confidence 55556667543
No 14
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=24.78 E-value=51 Score=26.18 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=28.4
Q ss_pred CceEEEEEcCC---hhh------HHHHHHcCCCe----eccHHHHHHHHcCCccCCCccEEEEchhhH
Q psy16349 156 EDRSIIAFCSQ---HET------AAQLQDMGVAL----VGDSDTIKGIERGLVTMPTFQFVICNPKIL 210 (351)
Q Consensus 156 k~~kVlVFa~~---~e~------a~~AkeaGA~~----VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m 210 (351)
+..+|+++|.. ... .+.+.+.|.++ ++-.+ +.. .+.++|++|+|+++-
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~----~~~---~~~~~DlIist~~l~ 80 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE----IET---YMDGVHLICTTARVD 80 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTT----TTT---STTSCSEEEESSCCC
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHH----Hhh---ccCCCCEEEECCccc
Confidence 45689999973 221 23456677652 22222 211 134799999999875
No 15
>3enp_A TP53RK-binding protein; keops complex telomere kinase regulator, nucleus, hydrolase; 2.48A {Homo sapiens}
Probab=24.78 E-value=1.9e+02 Score=25.00 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=49.2
Q ss_pred eEEEEecCCCCCCCceEEEEEcCChhhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh------
Q psy16349 143 THIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI------ 216 (351)
Q Consensus 143 rg~V~LPh~~~~gk~~kVlVFa~~~e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l------ 216 (351)
-.++.||+.+ +-...|+.|.+=.. ..+|-+++.+|. +|+++-.++++.....+
T Consensus 4 ~~t~~l~~fp--~~~v~i~LF~~V~N--------------a~~l~~~l~~~~-----~~~a~idA~~I~s~~hll~Ai~k 62 (177)
T 3enp_A 4 QLTHQLDLFP--ECRVTLLLFKDVKN--------------AGDLRRKAMEGT-----IDGSLINPTVIVDPFQILVAANK 62 (177)
T ss_dssp CEEEECSSCT--TCEEEEEEEESCSC--------------HHHHHHHHHHTC-----SCSEEECGGGCSCHHHHHHHHHH
T ss_pred eeeeecCCCC--CCEEEEEEECCCCC--------------HHHHHHHHHcCC-----CCEEEEChhHhCCHHHHHHHHHH
Confidence 3689999877 66888999987422 235666777666 45688888876554443
Q ss_pred ------hchhccCCCcC-----CCCCCccCHHHHHHHHh
Q psy16349 217 ------RGLLKKRIPTL-----KSQTLGVDLIGIAKRLQ 244 (351)
Q Consensus 217 ------rGLMkkk~P~~-----K~GTv~~DI~~~V~~~k 244 (351)
+|.|++|-... -.|+ .+|.+++++|-
T Consensus 63 Al~~~~~g~l~Tr~l~sEIl~~LSp~--~nI~eAlkrfG 99 (177)
T 3enp_A 63 AVHLYKLGKMKTRTLSTEIIFNLSPN--NNISEALKKFG 99 (177)
T ss_dssp HHHHHTTTCCSSSSHHHHHHHHHCSS--SCHHHHHHHHB
T ss_pred HHHHHHcCCcCcCChHHHHhhhhCcc--ccHHHHHHHhC
Confidence 56662221100 1233 67888888774
No 16
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=24.70 E-value=21 Score=27.74 Aligned_cols=53 Identities=13% Similarity=0.332 Sum_probs=41.3
Q ss_pred hhHHHHHHcCCCeeccHHHHHHHHcCCccCCCccEEEEchhhHHHhHHh-hchhccCCCcCCCCCCccC
Q psy16349 168 ETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRI-RGLLKKRIPTLKSQTLGVD 235 (351)
Q Consensus 168 e~a~~AkeaGA~~VGg~eLI~kI~~g~i~~~~fD~~IAtpd~m~~L~~l-rGLMkkk~P~~K~GTv~~D 235 (351)
..+++-.+||||+++--..+..+.+|.-.+ |.+. .+.++.-||+...+.++.+
T Consensus 11 ~IVqQLv~AGADLA~vrtmlrnvm~g~~va---------------lsr~e~~il~qHFPnm~~~Gi~~~ 64 (85)
T 3hgl_A 11 SIVQQLVSEGADISHTRNMLRNAMNGDAVA---------------FSRVEQNIFRQHFPNMPMHGISRD 64 (85)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCC---------------CCHHHHHHHHHHCTTHHHHCCCTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCchHh---------------hhHHHHHHHHHHChhhhhccCCCC
Confidence 457788899999999999999998887522 3343 6677788899888777766
No 17
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=23.01 E-value=1.1e+02 Score=28.24 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=32.5
Q ss_pred EEEEEcCChhhHHHHHHcCCCeecc----HHHHHHHHcCCccCCCccEEEEch
Q psy16349 159 SIIAFCSQHETAAQLQDMGVALVGD----SDTIKGIERGLVTMPTFQFVICNP 207 (351)
Q Consensus 159 kVlVFa~~~e~a~~AkeaGA~~VGg----~eLI~kI~~g~i~~~~fD~~IAtp 207 (351)
+|.+++.+++..+.|++.||+.+-. ++.++++.+|. .+|++|-+.
T Consensus 198 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~----g~D~vid~~ 246 (344)
T 2h6e_A 198 TIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGL----GASIAIDLV 246 (344)
T ss_dssp EEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTC----CEEEEEESS
T ss_pred EEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCC----CccEEEECC
Confidence 5888887767778899999987643 45566776654 488888654
No 18
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=22.02 E-value=51 Score=30.91 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=21.4
Q ss_pred EEEEEcCChhhHHHHHHcCCCeeccH
Q psy16349 159 SIIAFCSQHETAAQLQDMGVALVGDS 184 (351)
Q Consensus 159 kVlVFa~~~e~a~~AkeaGA~~VGg~ 184 (351)
+|.|=|++.+++++|.++||||++-+
T Consensus 198 ~IgVev~t~eea~eA~~aGaD~I~ld 223 (286)
T 1x1o_A 198 KVEVEVRSLEELEEALEAGADLILLD 223 (286)
T ss_dssp CEEEEESSHHHHHHHHHHTCSEEEEE
T ss_pred EEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence 56777787888999999999998654
No 19
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=20.31 E-value=62 Score=30.36 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=21.8
Q ss_pred eEEEEEcCChhhHHHHHHcCCCeeccH
Q psy16349 158 RSIIAFCSQHETAAQLQDMGVALVGDS 184 (351)
Q Consensus 158 ~kVlVFa~~~e~a~~AkeaGA~~VGg~ 184 (351)
.+|.|=+++.+++++|.++|||+++-+
T Consensus 194 ~~I~VEV~tleea~eA~~aGaD~I~LD 220 (285)
T 1o4u_A 194 TKIEVEVENLEDALRAVEAGADIVMLD 220 (285)
T ss_dssp SCEEEEESSHHHHHHHHHTTCSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence 357777888888999999999987654
Done!