Your job contains 1 sequence.
>psy16349
MSVLRSLIFSSSVPRKVFSISEVVSFHTATPYYAARKGTRARKEGKKVRTEIKKVAWTPD
SKKKKDIYASRKVDESNLTYPEDDIYLQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAF
IGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVAL
VGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIA
KRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDE
DFITRILLWSEPSPEKFKLDLSGLIEKPKAKELDTGEEIDDEPKEMAAQKV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16349
(351 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0037566 - symbol:mRpL1 "mitochondrial ribosomal pr... 586 5.9e-57 1
WB|WBGene00017997 - symbol:F33D4.5 species:6239 "Caenorha... 338 1.1e-30 1
UNIPROTKB|E1C7D6 - symbol:MRPL1 "Uncharacterized protein"... 255 7.0e-22 1
MGI|MGI:2137202 - symbol:Mrpl1 "mitochondrial ribosomal p... 221 1.5e-16 1
UNIPROTKB|D4AC74 - symbol:Mrpl1 "Protein Mrpl1" species:1... 214 1.1e-15 1
RGD|1306850 - symbol:Mrpl1 "mitochondrial ribosomal prote... 207 7.4e-15 1
UNIPROTKB|F1RYS1 - symbol:MRPL1 "Uncharacterized protein"... 194 8.1e-14 1
UNIPROTKB|Q9BYD6 - symbol:MRPL1 "39S ribosomal protein L1... 197 1.4e-13 1
UNIPROTKB|E2RQ67 - symbol:MRPL1 "Uncharacterized protein"... 192 6.0e-13 1
UNIPROTKB|A6QPQ5 - symbol:MRPL1 "39S ribosomal protein L1... 189 1.3e-12 1
ZFIN|ZDB-GENE-060526-311 - symbol:mrpl1 "mitochondrial ri... 184 5.3e-12 1
UNIPROTKB|H0Y8N7 - symbol:MRPL1 "39S ribosomal protein L1... 148 2.1e-08 1
TIGR_CMR|APH_1027 - symbol:APH_1027 "ribosomal protein L1... 125 1.0e-05 1
>FB|FBgn0037566 [details] [associations]
symbol:mRpL1 "mitochondrial ribosomal protein L1"
species:7227 "Drosophila melanogaster" [GO:0006412 "translation"
evidence=ISS] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002143 InterPro:IPR005879 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687 EMBL:AE014297
GO:GO:0006412 GO:GO:0003723 GO:GO:0005762 GO:GO:0003735
SUPFAM:SSF56808 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 CTD:65008 GeneTree:ENSGT00390000003587
OMA:HRETHHP TIGRFAMs:TIGR01170 EMBL:AY051800 RefSeq:NP_524275.1
UniGene:Dm.2468 SMR:Q9VHT5 STRING:Q9VHT5 EnsemblMetazoa:FBtr0081832
GeneID:40980 KEGG:dme:Dmel_CG7494 UCSC:CG7494-RA
FlyBase:FBgn0037566 InParanoid:Q9VHT5 OrthoDB:EOG4RN8RF
GenomeRNAi:40980 NextBio:821575 Uniprot:Q9VHT5
Length = 354
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 125/326 (38%), Positives = 195/326 (59%)
Query: 27 HTATPYYAARKGTRARKEGKKVRTEIKKVAWTPDSKKKKDIY---ASRKVDESNLTYPED 83
H + AARKGTR + KKV+ E+KKV + P +++ K I A + VD+S P+D
Sbjct: 25 HLSAVSEAARKGTREKARKKKVKVEVKKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKD 84
Query: 84 DIYLQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWT 143
D Y+ + Y+ ++ QEA+ RETHHP+MYN+P A + +E++ +K +++D +
Sbjct: 85 DCYVGRYYRWPVYSVQEAIQCHRETHHPSMYNVPNAPLNLDIELNMQA-EKITRFVDNFQ 143
Query: 144 HIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFV 203
+ + H FDHGE+R II F + + ++ G +LVG + IK I G + + +Q+V
Sbjct: 144 RMAMIPHKFDHGEERKIIVFTKGNNEVLEAREAGASLVGGVELIKDITSGELLLSDYQYV 203
Query: 204 ICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYS 263
I +P ILA+L+ +RGL+K++ P KS+TLG +L + + +GI YS KD +Q+FG
Sbjct: 204 IAHPNILAELVALRGLMKRKFPNPKSETLGTNLAEMIVKFSSGISYSAAKDEYQQNFGLI 263
Query: 264 DFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLD--- 320
+G LDM ++LE+N+K +L DI+TM+P K E FITR+LL S PS E+ K+D
Sbjct: 264 TASVGTLDMDVQKLEENIKFLLQDINTMRP--KREGR-FITRVLLKSPPSSEQLKIDPFV 320
Query: 321 -LSGLIEKPKAKELDTGEEIDDEPKE 345
+ + +K AK G + EP E
Sbjct: 321 YVPEMWDKSTAKVKRDGAKKQTEPAE 346
>WB|WBGene00017997 [details] [associations]
symbol:F33D4.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
Pfam:PF00687 GO:GO:0008340 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
EMBL:FO080445 Gene3D:3.30.190.20 Gene3D:3.40.50.790
eggNOG:NOG271882 GeneTree:ENSGT00390000003587 RefSeq:NP_501257.1
HSSP:P27150 ProteinModelPortal:Q7KPW7 SMR:Q7KPW7 STRING:Q7KPW7
PaxDb:Q7KPW7 EnsemblMetazoa:F33D4.5 GeneID:177549
KEGG:cel:CELE_F33D4.5 UCSC:F33D4.5.1 CTD:177549 WormBase:F33D4.5
HOGENOM:HOG000018009 InParanoid:Q7KPW7 OMA:EIVPVPH NextBio:897318
Uniprot:Q7KPW7
Length = 377
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 81/278 (29%), Positives = 145/278 (52%)
Query: 74 DESNLTY-PEDDIYLQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTH 132
DE+NL P D++++ +K + + EAL RE P++YN P A I +E++ TT
Sbjct: 89 DEANLPEKPTLDVFIKSHFKTQYYTVSEALDMHRELQSPSIYNNPNAPIRLRLELNMTT- 147
Query: 133 QKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIER 192
+++ K + IV V H F+H E R+I+AF + + + G + DTIK I +
Sbjct: 148 ERQTKMVTGSDEIVPVPHPFNHNEKRTILAFANDVKLQELAVESGAEMALGQDTIKKIIK 207
Query: 193 GLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMK 252
G + F + + + + ++ +RG+LK R PT + LG +L + ++ + G+K ++K
Sbjct: 208 GQFRTDDYDFCVSHSDMGSSILPLRGILKMRFPTRANGGLGENLPELIEKFKNGVKLNIK 267
Query: 253 KDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEP 312
DP +G SD +GRL M E +E N+ ++A + P+ F+ R LL + P
Sbjct: 268 GDPVYPIWGLSDCVVGRLSMPNEHIEANIATVIAAACAHRNPALGS---FVNRALLMTIP 324
Query: 313 SPEKFKLDLSGLIEKPKAKELDTGEEIDDEPKEMAAQK 350
E + +D+ I P +E++ E+ ++ K+ +K
Sbjct: 325 GEENYAIDVKPWIPIPTEEEIEKIEKRKNKKKKKDEKK 362
>UNIPROTKB|E1C7D6 [details] [associations]
symbol:MRPL1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0015934
"large ribosomal subunit" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 GO:GO:0005739 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 Gene3D:3.40.50.790
CTD:65008 GeneTree:ENSGT00390000003587 InterPro:IPR024663
Pfam:PF13003 EMBL:AADN02016133 IPI:IPI00598672 RefSeq:XP_420471.2
Ensembl:ENSGALT00000016805 GeneID:422507 KEGG:gga:422507
OMA:IQADFYV NextBio:20825131 Uniprot:E1C7D6
Length = 332
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 84/291 (28%), Positives = 139/291 (47%)
Query: 60 DSKKKKDIYASRKVDESN---LTYPEDDIYLQKDYKLRIFQFQEALAAIRETHHPTMYNL 116
DS+K K +K L+ P DD+YL YK + +EA+ +++ +
Sbjct: 52 DSQKAKQEETQKKKGRGRRPLLSKPVDDVYLTWYYKRPSYNVEEAVGMLKKFQELD-FTY 110
Query: 117 PRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDM 176
P+ F+ V + +KK +D + IV + + F E ++ F + A ++
Sbjct: 111 PKQFVYINVTLDMELPKKKK--VDQFASIVLLPYRFTD-ETNKVLVFTENEQEAEIAREN 167
Query: 177 GVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDL 236
G A+VG + IK I + M F I P I+ L+ +R LK++ P+ + +LG D+
Sbjct: 168 GAAVVGGVELIKWILEDEIQM---DFYIAVPAIIPKLIPLRNKLKRKYPSTRRNSLGHDI 224
Query: 237 IGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSK 296
+ + + G++Y++ QD I RLDM EQ+ NLK I+ DI KP S
Sbjct: 225 PKMLQFFREGLEYTV------QDERLIKTRIARLDMPTEQIVANLKTIIEDICKFKPSSA 278
Query: 297 PEDEDFITRILLWSEPSPEKFKLDLSGLI---EKPKAKELDTGEEIDDEPK 344
F+ ++++ S S E L+L GL+ EK + KE + E+ DDE K
Sbjct: 279 GP---FVKKLVIRSSTS-EGLLLNLDGLLPEAEKVEEKEEEPAED-DDEEK 324
>MGI|MGI:2137202 [details] [associations]
symbol:Mrpl1 "mitochondrial ribosomal protein L1"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=ISO] [GO:0015934
"large ribosomal subunit" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR005879
InterPro:IPR016094 InterPro:IPR016095 InterPro:IPR023674
EMBL:AB049632 MGI:MGI:2137202 GO:GO:0005739 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790 CTD:65008
GeneTree:ENSGT00390000003587 HOGENOM:HOG000293225
HOVERGEN:HBG061212 OrthoDB:EOG4K6G54 InterPro:IPR024663
Pfam:PF13003 TIGRFAMs:TIGR01170 EMBL:AK010343 EMBL:AK142249
EMBL:BC028774 EMBL:BC061042 IPI:IPI00118237 RefSeq:NP_444388.2
UniGene:Mm.295499 ProteinModelPortal:Q99N96 SMR:Q99N96
STRING:Q99N96 PhosphoSite:Q99N96 PaxDb:Q99N96 PRIDE:Q99N96
Ensembl:ENSMUST00000036437 Ensembl:ENSMUST00000117766 GeneID:94061
KEGG:mmu:94061 UCSC:uc008yfi.1 InParanoid:Q99N96 OMA:IQNGWTD
NextBio:352027 Bgee:Q99N96 CleanEx:MM_MRPL1 Genevestigator:Q99N96
GermOnline:ENSMUSG00000029486 Uniprot:Q99N96
Length = 336
Score = 221 (82.9 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 80/312 (25%), Positives = 141/312 (45%)
Query: 27 HTATPYYAARKGTRARKEGKKVRTEIKKVAWTPDSKKKKDIYASRKVDESNLTYPEDDIY 86
H A AA K R K+G K +T +K D +K K Y + D PEDD+Y
Sbjct: 42 HFAAAAAAATKPARKIKKGAKEKTSDEKPV--DDIEKIKS-YTYMESD------PEDDVY 92
Query: 87 LQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIV 146
L++ Y RI++ ++A+ +++ N P+ G ++++ K K ++P+ ++
Sbjct: 93 LKRLYPRRIYEVEKAIHLLKKFQVLDFTN-PKQ--GVYLDLTLDMALGKKKTVEPFASVI 149
Query: 147 EVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICN 206
+ H F E + F + ++ G A G +D +K I V + F +
Sbjct: 150 ALPHLFS-SEVNKVAVFTANASEIKIAEENGAAFAGGTDLVKKIMDDEVVV---DFYVAV 205
Query: 207 PKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFH 266
P+I+ +L +R LKKR P ++G D+ + + +T + + D + Q+F
Sbjct: 206 PEIMGELNPLRKKLKKRFPKATRNSIGRDIPKMLELFKTA--HEIMVDEERQNF--LSTK 261
Query: 267 IGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSGLIE 326
I LDM +Q+ NL+ ++ ++ +P + F+ R L S S E L L+
Sbjct: 262 IATLDMPSDQIAANLQAVINEVCKHRPLNLGP---FVVRAFLRSSTS-EGLLLKTDSLLP 317
Query: 327 KP-KAKELDTGE 337
K K E +T E
Sbjct: 318 KEAKTTEAETEE 329
>UNIPROTKB|D4AC74 [details] [associations]
symbol:Mrpl1 "Protein Mrpl1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA]
InterPro:IPR005879 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 RGD:1306850 GO:GO:0005739 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR024663
Pfam:PF13003 TIGRFAMs:TIGR01170 IPI:IPI00782533
Ensembl:ENSRNOT00000060834 ArrayExpress:D4AC74 Uniprot:D4AC74
Length = 331
Score = 214 (80.4 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 75/294 (25%), Positives = 133/294 (45%)
Query: 34 AARKGTRARKEGKKVRTEIKKVAWTPDSKKKKDIYASRKVDESNLTYPEDDIYLQKDYKL 93
AA K TR+ ++ KK E K T D K DI + + PEDD+YL++ Y
Sbjct: 46 AAAKATRSARKNKKGAKE--K---TSDEKPVDDIEKIKSYTYME-SEPEDDVYLKRLYPR 99
Query: 94 RIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFD 153
RI++ ++A+ +++ N P+ G ++++ K K ++P+ ++ + H F
Sbjct: 100 RIYEVEKAIHLLKKFQVLDFTN-PKQ--GVYLDLTLDMALGKKKKVEPFASVIALPHPFS 156
Query: 154 HGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADL 213
E + F ++ G A G +D +K I V + F + P+I+ +L
Sbjct: 157 -SEVNKVAVFTGNASEIKIAEENGAAFAGGADLVKKILDDEVVV---DFYVAVPEIMGEL 212
Query: 214 MRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMS 273
+R LKKR P ++G D+ + + +T + + D + Q+F I LDM
Sbjct: 213 NPLRKKLKKRFPKATRNSIGRDIPKMLELFKTA--HEIMVDEERQNF--LSTKIATLDMP 268
Query: 274 QEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSGLIEK 327
+QL NL+ ++ ++ +P + F+ R L S S E L L+ K
Sbjct: 269 SDQLAANLQAVINEVCRHRPLNLGP---FVVRAFLRSSTS-EGLLLKTDSLLPK 318
>RGD|1306850 [details] [associations]
symbol:Mrpl1 "mitochondrial ribosomal protein L1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0006412
"translation" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] InterPro:IPR005879 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 RGD:1306850 GO:GO:0005739
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0015934
SUPFAM:SSF56808 Gene3D:3.30.190.20 Gene3D:3.40.50.790
GeneTree:ENSGT00390000003587 InterPro:IPR024663 Pfam:PF13003
TIGRFAMs:TIGR01170 IPI:IPI00764993 Ensembl:ENSRNOT00000002834
UCSC:RGD:1306850 ArrayExpress:F1M9A4 Uniprot:F1M9A4
Length = 322
Score = 207 (77.9 bits), Expect = 7.4e-15, P = 7.4e-15
Identities = 72/280 (25%), Positives = 128/280 (45%)
Query: 34 AARKGTRARKEGKKVRTEIKKVAWTPDSKKKKDIYASRKVDESNLTYPEDDIYLQKDYKL 93
AA K R K+G K +T +K D +K K Y ES PEDD+YL++ Y
Sbjct: 46 AAAKSARKNKKGAKEKTSDEKPV--DDIEKIKS-YTYM---ESE---PEDDVYLKRLYPR 96
Query: 94 RIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFD 153
RI++ ++A+ +++ N P+ G ++++ K K ++P+ ++ + H F
Sbjct: 97 RIYEVEKAIHLLKKFQVLDFTN-PKQ--GVYLDLTLDMALGKKKKVEPFASVIALPHPFS 153
Query: 154 HGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADL 213
E + F ++ G A G +D +K I V + F + P+I+ +L
Sbjct: 154 -SEVNKVAVFTGNASEIKIAEENGAAFAGGADLVKKILDDEVVV---DFYVAVPEIMGEL 209
Query: 214 MRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMS 273
+R LKKR P ++G D+ + + +T + + D + Q+F I LDM
Sbjct: 210 NPLRKKLKKRFPKATRNSIGRDIPKMLELFKTA--HEIMVDEERQNF--LSTKIATLDMP 265
Query: 274 QEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPS 313
+QL NL+ ++ ++ +P + F+ R L S S
Sbjct: 266 SDQLAANLQAVINEVCRHRPLNLGP---FVVRAFLRSSTS 302
>UNIPROTKB|F1RYS1 [details] [associations]
symbol:MRPL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0015934
"large ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002143 InterPro:IPR005879 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 PIRSF:PIRSF002155
GO:GO:0005739 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 Gene3D:3.40.50.790
GeneTree:ENSGT00390000003587 OMA:HRETHHP InterPro:IPR024663
Pfam:PF13003 TIGRFAMs:TIGR01170 EMBL:CU929383
Ensembl:ENSSSCT00000009847 Uniprot:F1RYS1
Length = 278
Score = 194 (73.4 bits), Expect = 8.1e-14, P = 8.1e-14
Identities = 62/256 (24%), Positives = 124/256 (48%)
Query: 81 PEDDIYLQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMD 140
PEDD+YL++ Y +I++ ++A+ +++ N P + + + T +KK ++
Sbjct: 35 PEDDVYLKRLYPRQIYEVEKAIHLLKKFQVLDFTN-PNQGVYLDLTLDMTLGKKKK--VE 91
Query: 141 PWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTF 200
P+ ++ + + F E + F ++ G A G ++ I+ I + P F
Sbjct: 92 PFASVLSLPYPFT-SEINKVAVFTGNASEIKIAEEKGAAFAGGTNLIQKILDDEI-QPDF 149
Query: 201 QFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDF 260
+ P+I+ +L +R LKKR P L ++G D+ + + +TG + +K D + ++F
Sbjct: 150 YVAV--PEIMPELNPLRKKLKKRFPKLTRNSIGRDIPKMLELFKTG--HEIKVDEERENF 205
Query: 261 GYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLD 320
+ I L+MS +Q+ NL+ ++ ++ +P + F+ R L S S E +
Sbjct: 206 --LETKIATLNMSSDQIAANLQAVINEVCRQRPLNLGP---FVVRAFLRSSTS-EGLLIK 259
Query: 321 LSGLIEKP-KAKELDT 335
+ L+ K +AKE T
Sbjct: 260 IEPLLPKEVEAKESGT 275
>UNIPROTKB|Q9BYD6 [details] [associations]
symbol:MRPL1 "39S ribosomal protein L1, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR005879 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 GO:GO:0005739 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 EMBL:CH471057 GO:GO:0015934
SUPFAM:SSF56808 Gene3D:3.30.190.20 Gene3D:3.40.50.790 CTD:65008
eggNOG:NOG271882 HOVERGEN:HBG061212 OMA:HRETHHP OrthoDB:EOG4K6G54
InterPro:IPR024663 Pfam:PF13003 TIGRFAMs:TIGR01170 EMBL:AF212225
EMBL:AC112225 EMBL:AC114801 EMBL:BC014356 EMBL:BC015109
EMBL:BC032595 EMBL:AB049474 EMBL:CR457191 EMBL:AK024791
IPI:IPI00549381 RefSeq:NP_064621.3 UniGene:Hs.532019
ProteinModelPortal:Q9BYD6 SMR:Q9BYD6 IntAct:Q9BYD6 STRING:Q9BYD6
PhosphoSite:Q9BYD6 DMDM:239938694 PaxDb:Q9BYD6 PRIDE:Q9BYD6
DNASU:65008 Ensembl:ENST00000315567 GeneID:65008 KEGG:hsa:65008
UCSC:uc003hku.2 GeneCards:GC04P078694 HGNC:HGNC:14275 HPA:HPA043656
MIM:611821 neXtProt:NX_Q9BYD6 PharmGKB:PA30938 InParanoid:Q9BYD6
GenomeRNAi:65008 NextBio:67192 ArrayExpress:Q9BYD6 Bgee:Q9BYD6
CleanEx:HS_MRPL1 Genevestigator:Q9BYD6 GermOnline:ENSG00000169288
Uniprot:Q9BYD6
Length = 325
Score = 197 (74.4 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 70/298 (23%), Positives = 135/298 (45%)
Query: 41 ARKEGKKVRTEIKKVAWTPDSKKKKDIYASRKVDESNLTYPEDDIYLQKDYKLRIFQFQE 100
A K KK + K+ TPD +KKD K PEDD+YL++ Y +I++ ++
Sbjct: 46 ATKSAKKTKKGAKEK--TPD--EKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEK 101
Query: 101 ALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSI 160
A+ +++ + P+ + + + +KK ++P+T ++ + + F E +
Sbjct: 102 AVHLLKK-FQILDFTSPKQSVYLDLTLDMALGKKK--NVEPFTSVLSLPYPFA-SEINKV 157
Query: 161 IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLL 220
F ++ G A G + I+ I + F + P+I+ +L R+R L
Sbjct: 158 AVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVA---DFYVAVPEIMPELNRLRKKL 214
Query: 221 KKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDN 280
K+ P L ++G D+ + + + G + +K D + ++F + I LDMS +Q+ N
Sbjct: 215 NKKYPKLSRNSIGRDIPKMLELFKNG--HEIKVDEERENFLQTK--IATLDMSSDQIAAN 270
Query: 281 LKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSGLIEKPKAKELDTGEE 338
L+ ++ ++ +P + F+ R L S S E L + L+ K E E+
Sbjct: 271 LQAVINEVCRHRPLNLGP---FVVRAFLRSSTS-EGLLLKIDPLLPKEVKNEESEKED 324
>UNIPROTKB|E2RQ67 [details] [associations]
symbol:MRPL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR005879 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 GO:GO:0005739 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20
Gene3D:3.40.50.790 CTD:65008 GeneTree:ENSGT00390000003587
OMA:HRETHHP InterPro:IPR024663 Pfam:PF13003 TIGRFAMs:TIGR01170
EMBL:AAEX03016692 RefSeq:XP_535620.1 Ensembl:ENSCAFT00000013848
GeneID:478443 KEGG:cfa:478443 Uniprot:E2RQ67
Length = 328
Score = 192 (72.6 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 75/332 (22%), Positives = 156/332 (46%)
Query: 12 SVPRKVFSISEVVSFHTATPYY--AARKGTRARKEGKKVRTEIKKVAWTPDSKKKKDIYA 69
S+ +KV+ I + + Y ++R A K KK + +K A S +KKD
Sbjct: 22 SLSKKVYQIP----LYPCSVYVQVSSRHFAAATKPAKKTKKSMKDKA----SDEKKDEIE 73
Query: 70 SRKVDESNLTYPEDDIYLQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEIST 129
K PEDD+YL+ Y +I++ ++A+ +++ N P+ G ++++
Sbjct: 74 KIKSYSFMEGEPEDDVYLKHLYPRQIYEVEKAIQLLKKFQTLDFTN-PKQ--GVYLDLTL 130
Query: 130 TTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQL-QDMGVALVGDSDTIK 188
K K ++P+ ++ + F ++ +A +++ + ++ ++ G A G ++ I+
Sbjct: 131 DMSLGKKKKVEPFASVLSFPYPFISEINK--VAVLTENASEIKIAEENGAAFAGGTNLIQ 188
Query: 189 GIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTGIK 248
I + F + P+I+ +L ++ LKKR P L ++G D+ + + +TG
Sbjct: 189 KILDDEIQS---DFYVAVPEIMPELNPLKKKLKKRFPKLTRNSIGRDIPKMLELFKTG-- 243
Query: 249 YSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRILL 308
+ +K D + ++F + I LDM +Q+ NL+ +++++ +P + F+ R L
Sbjct: 244 HEIKVDEERENF--LETKIATLDMQSDQIAANLQAVISEVCKHRPLNLGP---FVVRAFL 298
Query: 309 WSEPSPEKFKLDLSGLIEKPKAKELDTGEEID 340
+ S E L + L+ PK E + + D
Sbjct: 299 RTSTS-EGLLLKIKPLL--PKEVETEESNKED 327
>UNIPROTKB|A6QPQ5 [details] [associations]
symbol:MRPL1 "39S ribosomal protein L1, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR005879 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 GO:GO:0005739 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20
Gene3D:3.40.50.790 EMBL:BC149433 IPI:IPI00867346
RefSeq:NP_001095314.1 UniGene:Bt.66027 PDB:2FTC PDBsum:2FTC
ProteinModelPortal:A6QPQ5 STRING:A6QPQ5 Ensembl:ENSBTAT00000045390
GeneID:504835 KEGG:bta:504835 CTD:65008 eggNOG:NOG271882
GeneTree:ENSGT00390000003587 HOGENOM:HOG000293225
HOVERGEN:HBG061212 InParanoid:A6QPQ5 OMA:HRETHHP OrthoDB:EOG4K6G54
EvolutionaryTrace:A6QPQ5 NextBio:20866854 InterPro:IPR024663
Pfam:PF13003 TIGRFAMs:TIGR01170 Uniprot:A6QPQ5
Length = 325
Score = 189 (71.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 71/295 (24%), Positives = 135/295 (45%)
Query: 41 ARKEGKKVRTEIKKVAWTPDSKKKKDIYASRKVDESNLTYPEDDIYLQKDYKLRIFQFQE 100
A K KK + K+ A S +KKD K PEDD+YL++ Y +I++ ++
Sbjct: 46 AAKPAKKTKKGTKEKA----SNEKKDDIEKIKSYPFMEGEPEDDVYLKRLYPRQIYEVEK 101
Query: 101 ALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSI 160
A+ +++ N P+ + + + T +KK ++P+ ++ + + F E +
Sbjct: 102 AVNLLKKFQVLDFTN-PKQGVYLDLTLDMTLGKKKK--VEPFASVLSLPYPFI-SEMSKV 157
Query: 161 IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLL 220
F ++ G A G ++ I+ I + F I P+I+ +L +R L
Sbjct: 158 AVFTGNASEIKIAEENGAAFAGGTNLIQKILDDEIQA---DFYIAVPEIMPELNPLRKKL 214
Query: 221 KKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDN 280
K R P ++G D+ + + +TG++ +K D + ++F + I LDM +Q+ N
Sbjct: 215 KTRFPKFNRNSVGRDIPKMLELFKTGLE--IKVDEERENF--LETKIATLDMPSDQIAAN 270
Query: 281 LKRILADISTMKPPSKPEDEDFITRILLWSEPSPEKFKLDLSGLIEKP-KAKELD 334
L+ ++ ++ +P + F+ R L S S E L + L+ K + KE D
Sbjct: 271 LQAVINEVCRQRPLNLGP---FVVRAFLRSSTS-EGLLLKIEPLLPKEGETKESD 321
>ZFIN|ZDB-GENE-060526-311 [details] [associations]
symbol:mrpl1 "mitochondrial ribosomal protein L1"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 ZFIN:ZDB-GENE-060526-311 GO:GO:0003723
GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808 EMBL:BX640512
Gene3D:3.30.190.20 Gene3D:3.40.50.790 GeneTree:ENSGT00390000003587
InterPro:IPR024663 Pfam:PF13003 IPI:IPI00997672
Ensembl:ENSDART00000076835 ArrayExpress:F1QMG1 Uniprot:F1QMG1
Length = 324
Score = 184 (69.8 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 79/325 (24%), Positives = 148/325 (45%)
Query: 5 RSLIFSSSVPRKVFSISEVVSFHTATPYYAARKGTRARKEGKKVRTEIKKVAWTPDSKKK 64
+SL+F++ P S+S + TA +AR +K+ KK +KV K++
Sbjct: 24 QSLLFTNRAP----SVS--CNSLTAHRQQSARSYAATKKKEKKEEAVKEKVV-----KER 72
Query: 65 KDIYASRKVDESNLTY--PEDDIYLQKDYKLRIFQFQEALAAIRETHHP--TMYNLPRAF 120
K I + LT P DD+Y+ + Y +++ A+ ++ + N P +
Sbjct: 73 KIIDDKDRHKPFGLTAWAPVDDVYMVRYYPRPLYELTVAIDMLKSFQKLDFSAENQP-IY 131
Query: 121 IGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVAL 180
I + + +KK K +DP+ + + H F + ++ F + + A + G A+
Sbjct: 132 INLRLNMKL---EKKRK-LDPFVRTIHLPHPFK-SDINKVVVFTEKPDQARIALENGAAV 186
Query: 181 VGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIA 240
G ++ E+ L T F + P IL L+ ++ L+K+ P K T+G+++ +
Sbjct: 187 AGG---VELFEKILADEITADFYLAEPDILPKLVPLKNKLRKKFPKSKRGTVGINIPRML 243
Query: 241 KRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDE 300
+ +TG +Y + +D Y + + LDM +E + +N+ IL D+++ KP E
Sbjct: 244 ELFKTGHEYIV------EDI-YVNTEVATLDMPKEHILENIHTILKDVASHKPA---EFG 293
Query: 301 DFITRILLWSEPSPEKFKLDLSGLI 325
I R ++ S S E L L L+
Sbjct: 294 PIIDRAIVCSRSS-EGLHLKLEELL 317
>UNIPROTKB|H0Y8N7 [details] [associations]
symbol:MRPL1 "39S ribosomal protein L1, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA]
InterPro:IPR005879 InterPro:IPR016095 InterPro:IPR023674
GO:GO:0005739 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.40.50.790 InterPro:IPR024663
Pfam:PF13003 TIGRFAMs:TIGR01170 EMBL:AC112225 EMBL:AC114801
HGNC:HGNC:14275 Ensembl:ENST00000502384 Uniprot:H0Y8N7
Length = 231
Score = 148 (57.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 48/218 (22%), Positives = 100/218 (45%)
Query: 43 KEGKKVRTEIKKVAWTPDSKKKKDIYASRKVDESNLTYPEDDIYLQKDYKLRIFQFQEAL 102
+ KK + K+ TPD +KKD K PEDD+YL++ Y +I++ ++A+
Sbjct: 2 RSAKKTKKGAKEK--TPD--EKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAV 57
Query: 103 AAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRSIIA 162
+++ + P+ + + + +KK ++P+T ++ + + F E +
Sbjct: 58 HLLKK-FQILDFTSPKQSVYLDLTLDMALGKKK--NVEPFTSVLSLPYPFA-SEINKVAV 113
Query: 163 FCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKK 222
F ++ G A G + I+ I + F + P+I+ +L R+R L K
Sbjct: 114 FTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVA---DFYVAVPEIMPELNRLRKKLNK 170
Query: 223 RIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDF 260
+ P L ++G D+ + + + G + +K D + ++F
Sbjct: 171 KYPKLSRNSIGRDIPKMLELFKNG--HEIKVDEERENF 206
>TIGR_CMR|APH_1027 [details] [associations]
symbol:APH_1027 "ribosomal protein L1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR002143 InterPro:IPR005878 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687
PIRSF:PIRSF002155 Prosite:PS01199 GO:GO:0006417 GO:GO:0006412
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000049
GO:GO:0019843 GO:GO:0015934 SUPFAM:SSF56808 eggNOG:COG0081
Gene3D:3.30.190.20 Gene3D:3.40.50.790 InterPro:IPR023673
HOGENOM:HOG000207015 TIGRFAMs:TIGR01169 RefSeq:YP_505586.1
ProteinModelPortal:Q2GJ65 STRING:Q2GJ65 GeneID:3931039
KEGG:aph:APH_1027 PATRIC:20950804 KO:K02863 OMA:YVTSTMG
ProtClustDB:PRK05424 BioCyc:APHA212042:GHPM-1034-MONOMER
HAMAP:MF_01318_B Uniprot:Q2GJ65
Length = 216
Score = 125 (49.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 42/142 (29%), Positives = 71/142 (50%)
Query: 155 GEDRSI-IAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVICNPKILADL 213
G R + +A ++ E A Q +D G +VGDSD I+ I++G F + I P ++ +
Sbjct: 55 GLGREVRVAVLAKGEYAKQAKDAGADVVGDSDLIEEIKKGRKL--DFDWCIATPDFMSQV 112
Query: 214 MRIRGLLKKR--IPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLD 271
I +L R +P K T+ D IAK + GI S + + +G IG +
Sbjct: 113 SAIAKILGPRGLMPNPKFGTVTFD---IAKMV--GIVKSGQVRFRSDKYGIVHVKIGDVG 167
Query: 272 MSQEQLEDNLKRILADISTMKP 293
S+E L +NL+ +++ + +KP
Sbjct: 168 FSREDLMENLRAVVSAVQGLKP 189
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 351 351 0.00078 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 610 (65 KB)
Total size of DFA: 220 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.66u 0.10s 31.76t Elapsed: 00:00:15
Total cpu time: 31.66u 0.10s 31.76t Elapsed: 00:00:16
Start: Thu Aug 15 14:42:19 2013 End: Thu Aug 15 14:42:35 2013