RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16349
(351 letters)
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 58.5 bits (141), Expect = 1e-10
Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 20/211 (9%)
Query: 87 LQKDYKLRIFQFQEALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIV 146
L+K +I+ EA ++E TVE+ + V
Sbjct: 7 LEKVDPNKIYTIDEAAHLVKELATAKFD--------ETVEVHAKLGIDPRRSDQNVRGTV 58
Query: 147 EVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPTFQFVI-C 205
+ H IA + + A ++ G VG + I+ I G +
Sbjct: 59 SLPHGLGKQVRVLAIAKGEKIKEA---EEAGADYVGGEEIIQKILDGWMDFDAVVATPDV 115
Query: 206 NPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAKRLQTG-IKYSMKKDPQEQDFGYSD 264
+ + L RI G + +P K+ T+G ++ I + ++ G I++ K G
Sbjct: 116 MGAVGSKLGRILGP-RGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKT------GAIH 168
Query: 265 FHIGRLDMSQEQLEDNLKRILADISTMKPPS 295
+G+ E+L DN++ + + KP
Sbjct: 169 APVGKACFPPEKLADNIRAFIRALEAHKPEG 199
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 38.2 bits (88), Expect = 7e-04
Identities = 31/199 (15%), Positives = 73/199 (36%), Gaps = 21/199 (10%)
Query: 100 EALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMDPWTHIVEVEHSFDHGEDRS 159
+A+ RE P + + E T + ++ + + ++ E HG +
Sbjct: 8 QAVKEARELAKPRNFT-------QSFEFIATLKEIDMRKPE---NRIKTEVVLPHGRGKE 57
Query: 160 -IIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMP---TFQFVICNPKILADLMR 215
IA + A Q +++G+ ++ + + + F I ++ + R
Sbjct: 58 AKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGR 117
Query: 216 IRG-LLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMSQ 274
G +L R K ++ + +RL+ + + + Y +G M+
Sbjct: 118 YMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDK------PYFQVLVGNEKMTD 171
Query: 275 EQLEDNLKRILADISTMKP 293
EQ+ DN++ +L ++
Sbjct: 172 EQIVDNIEAVLNVVAKKYE 190
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 36.3 bits (83), Expect = 0.003
Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 20/203 (9%)
Query: 100 EALAAIRETHHPTMYNLPRAFIGATVEISTTTHQKKVKYMD-PWTHIVEVEHSFDHGEDR 158
EAL T YN+ R F +VEI T +K D IV + +
Sbjct: 10 EALKLALSTE----YNVKRNFT-QSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKR- 63
Query: 159 SIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTMPT----FQFVICNPKILADLM 214
+ E + +V + ++ ++ + ++ + N + +A
Sbjct: 64 --VLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAG 121
Query: 215 RIRG-LLKKRIPTLKSQTLGVDLIGIAKRLQTGIKYSMKKDPQEQDFGYSDFHIGRLDMS 273
RI G L R D+ R + + K P IG DM
Sbjct: 122 RILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQP------QVQVFIGTEDMK 175
Query: 274 QEQLEDNLKRILADISTMKPPSK 296
E L +N +L I
Sbjct: 176 PEDLAENAIAVLNAIENKAKVET 198
>d1q9ua_ d.129.7.1 (A:) Unnamed hypothetical protein {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 128
Score = 28.7 bits (64), Expect = 0.50
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 12/77 (15%)
Query: 142 WTHIVEVEHSFDHGEDRSIIAFCSQHETAAQLQDMGVALVGDSDTIKGIERGLVTM--PT 199
+ + V+V + +R L+ G ++ + ++ + P
Sbjct: 3 FHYTVDVSTGMNETIER----------LEESLKQEGFGVLWQFSVTEKLQEKGLDFSTPM 52
Query: 200 FQFVICNPKILADLMRI 216
+CNP+ A ++
Sbjct: 53 VILEVCNPQEAARVLNE 69
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 29.4 bits (64), Expect = 0.57
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 11 SSVPRKVFSISEVVSFHTATPYYAARKGTRARKEGKKVRTEIKKVAWTPDSKKKKDIYAS 70
+ RK S F +A +Y KGT K+V K +S KDI+
Sbjct: 229 TQGFRKAISCH----FASADCHYIDVKGTSQENIEKEVVGIAHKFFGAENSVNLKDIWMF 284
Query: 71 R----KVDESNL 78
R K + +NL
Sbjct: 285 RARLVKGERTNL 296
>d1md8a2 g.18.1.1 (A:358-433) Complement C1R protease domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.2 bits (59), Expect = 0.89
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 9 FSSSVPRKVFSISEVVSFHTATPYYAARKGTRARKEGKKVRTEIKKVAWTPDSKKKK 65
F + V + + ++ PYY + +R+ + V T + W + K +K
Sbjct: 13 FRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEK 69
>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type
calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId:
9986]}
Length = 219
Score = 27.1 bits (60), Expect = 2.5
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 180 LVGDSDTIKGIERGLVT--MPTFQFV-ICNPKILADLMRIRGLLKKRIPTLKSQTLGVDL 236
+V D+DTI + T P +V I +PK+L L++ RG +++ L V +
Sbjct: 110 VVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRG-------KSQAKHLNVQM 162
Query: 237 IGIAKRLQ 244
+ K Q
Sbjct: 163 VAADKLAQ 170
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 25.1 bits (55), Expect = 3.5
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 266 HIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRIL 307
+G L Q++ + + D+ P D+ F+ R L
Sbjct: 4 RVGDLSPRQKEALAKFRENVQDVL---PALPNPDDYFLLRWL 42
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 113
Score = 25.3 bits (55), Expect = 6.8
Identities = 6/68 (8%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 182 GDSDTIKGIERGLVTMPTFQFVICNPKILADLMRIRGLLKKRIPTLKSQTLGVDLIGIAK 241
G++ + L T + + +++ L + +G I + +
Sbjct: 28 GNTHQFNIFKGILKPGSTHSNEFDAKLDVGTIEKVKFLWNNNVVNPTFPKVGAAKITV-Q 86
Query: 242 RLQTGIKY 249
+ + +
Sbjct: 87 KGEEKTVH 94
>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 25.1 bits (55), Expect = 8.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 303 ITRILLWSEPSPEKFKLDLSGLIEKPKAK 331
+T + L +P +LDL+G +E K +
Sbjct: 8 VTGLTLVCSSAPGPLELDLTGDLESFKKQ 36
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol
transfer protein sec14p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 24.4 bits (53), Expect = 9.7
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 255 PQEQDFGYSDFHIGRLDMSQEQLEDNLKRILADISTMKPPSKPEDEDFITRIL 307
PQ G LD +QE+ L+++L D + D+ + R L
Sbjct: 11 PQNCPPDALPGTPGNLDSAQEKALAELRKLLED----AGFIERLDDSTLLRFL 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0377 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,323,200
Number of extensions: 65200
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 16
Length of query: 351
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,226,816
Effective search space: 325106240
Effective search space used: 325106240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.1 bits)