BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16350
         (469 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L0E|A Chain A, Structural And Functional Analysis Of Tm Vi Of The Nhe1
           Isoform Of The Na+H+ EXCHANGER
          Length = 33

 Score = 32.3 bits (72), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 311 DSLYFGALISPTDPLTILAIFNDL 334
           D+L FG++IS  DP+ +LA+F ++
Sbjct: 5   DNLLFGSIISAVDPVAVLAVFEEI 28


>pdb|1JMX|B Chain B, Crystal Structure Of A Quinohemoprotein Amine
           Dehydrogenase From Pseudomonas Putida
 pdb|1JMZ|B Chain B, Crystal Structure Of A Quinohemoprotein Amine
           Dehydrogenase From Pseudomonas Putida With Inhibitor
          Length = 349

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 274 ILTFALIGTTISSFVIGTLMYVFLQLVPNLKSG------FTFLDSLYFGALISPTDPLTI 327
           + T A             L+Y +L +  +LK+G      F  L  LYF  L SP DP  I
Sbjct: 213 LYTIARFKDDKQDPATADLLYGYLSV--DLKTGKTHTQEFADLTELYFTGLRSPKDPNQI 270

Query: 328 LAIFNDL-KVDVNLYALVAIQNYGERY 353
             + N L K D+    L+   N    Y
Sbjct: 271 YGVLNRLAKYDLKQRKLIKAANLDHTY 297


>pdb|3R6U|A Chain A, Crystal Structure Of Choline Binding Protein Opubc From
           Bacillus Subtilis
          Length = 284

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 20  HIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRFRG 63
           H+  V +      QL L  D  W+K    G  +  KTYG  F G
Sbjct: 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGG 173



 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 182 HIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRFRG 225
           H+  V +      QL L  D  W+K    G  +  KTYG  F G
Sbjct: 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGG 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,346,127
Number of Sequences: 62578
Number of extensions: 476361
Number of successful extensions: 1036
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 4
length of query: 469
length of database: 14,973,337
effective HSP length: 102
effective length of query: 367
effective length of database: 8,590,381
effective search space: 3152669827
effective search space used: 3152669827
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)