Query psy16350
Match_columns 469
No_of_seqs 311 out of 1565
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 19:06:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965|consensus 100.0 3.8E-53 8.3E-58 443.7 22.4 289 124-469 34-333 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 2.3E-38 4.9E-43 342.0 27.7 262 144-468 27-302 (559)
3 KOG1966|consensus 100.0 7.3E-40 1.6E-44 342.2 10.4 254 152-467 66-333 (670)
4 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.3E-29 5.1E-34 271.2 23.8 217 240-467 45-273 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 100.0 3E-28 6.5E-33 256.4 26.3 217 240-466 56-288 (429)
6 KOG1965|consensus 99.9 2.4E-28 5.1E-33 257.2 6.1 131 75-234 92-222 (575)
7 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 3.1E-25 6.8E-30 243.1 25.8 192 246-444 74-282 (810)
8 KOG1966|consensus 99.9 2.4E-26 5.2E-31 241.1 7.9 124 76-227 93-216 (670)
9 PRK05326 potassium/proton anti 99.9 7.5E-21 1.6E-25 207.1 23.7 210 244-468 60-282 (562)
10 KOG4505|consensus 99.9 1.4E-20 2.9E-25 185.9 21.0 271 117-465 13-303 (467)
11 COG3263 NhaP-type Na+/H+ and K 99.9 9.4E-21 2E-25 192.8 15.5 209 245-469 62-281 (574)
12 TIGR00840 b_cpa1 sodium/hydrog 99.7 5.5E-19 1.2E-23 191.6 4.3 124 76-226 60-183 (559)
13 TIGR00932 2a37 transporter, mo 99.7 4.1E-15 8.8E-20 147.7 19.3 188 244-442 44-243 (273)
14 PF00999 Na_H_Exchanger: Sodiu 99.6 5.5E-16 1.2E-20 160.4 1.1 197 242-445 47-253 (380)
15 PRK03659 glutathione-regulated 99.1 6.6E-09 1.4E-13 114.6 21.7 183 245-441 58-252 (601)
16 PRK03562 glutathione-regulated 99.1 1.1E-08 2.4E-13 113.2 22.1 185 245-442 58-256 (621)
17 COG0025 NhaP NhaP-type Na+/H+ 99.0 2.7E-10 5.8E-15 120.6 3.9 114 77-224 55-168 (429)
18 COG0475 KefB Kef-type K+ trans 99.0 7.1E-08 1.5E-12 101.3 21.2 188 246-444 61-261 (397)
19 PRK10669 putative cation:proto 98.9 1.9E-07 4.2E-12 102.1 23.0 189 244-441 58-263 (558)
20 TIGR00831 a_cpa1 Na+/H+ antipo 98.8 8E-10 1.7E-14 119.9 0.4 115 77-226 44-158 (525)
21 PLN03159 cation/H(+) antiporte 98.6 1.6E-06 3.4E-11 99.1 19.1 192 244-441 105-308 (832)
22 PRK05326 potassium/proton anti 97.2 0.00089 1.9E-08 73.6 8.2 108 82-224 60-169 (562)
23 TIGR00844 c_cpa1 na(+)/h(+) an 96.9 0.011 2.5E-07 66.6 12.9 107 84-221 74-180 (810)
24 COG4651 RosB Kef-type K+ trans 96.0 0.13 2.8E-06 51.9 12.8 181 252-442 66-264 (408)
25 PF13593 DUF4137: SBF-like CPA 93.0 4.9 0.00011 41.1 16.4 175 242-421 28-211 (313)
26 PRK14853 nhaA pH-dependent sod 88.2 12 0.00025 40.1 14.1 157 250-441 70-242 (423)
27 PF00999 Na_H_Exchanger: Sodiu 84.6 0.079 1.7E-06 54.8 -4.2 113 79-222 46-158 (380)
28 PF01758 SBF: Sodium Bile acid 84.2 7.5 0.00016 36.3 9.4 75 250-332 3-78 (187)
29 TIGR00841 bass bile acid trans 83.0 25 0.00054 35.4 13.1 86 250-343 13-100 (286)
30 COG0385 Predicted Na+-dependen 82.5 35 0.00075 35.1 13.9 142 246-396 39-190 (319)
31 TIGR00832 acr3 arsenical-resis 75.2 1E+02 0.0023 31.6 15.3 70 250-323 48-118 (328)
32 TIGR00932 2a37 transporter, mo 55.6 2.6 5.7E-05 41.6 -1.2 73 86-180 48-120 (273)
33 TIGR00773 NhaA Na+/H+ antiport 54.3 1E+02 0.0022 32.4 10.2 158 250-442 60-233 (373)
34 PF01970 TctA: Tripartite tric 52.6 3.2E+02 0.0069 29.2 14.3 69 376-445 343-413 (419)
35 COG3263 NhaP-type Na+/H+ and K 52.5 16 0.00034 39.2 3.8 72 87-180 66-137 (574)
36 PF03812 KdgT: 2-keto-3-deoxyg 51.4 1.4E+02 0.0031 30.6 10.3 162 249-430 49-228 (314)
37 PRK12460 2-keto-3-deoxyglucona 50.7 76 0.0016 32.6 8.3 71 250-329 197-269 (312)
38 PRK03659 glutathione-regulated 46.4 59 0.0013 36.3 7.5 72 246-326 266-337 (601)
39 COG2431 Predicted membrane pro 41.6 3.3E+02 0.0071 27.7 10.9 63 244-316 131-198 (297)
40 PF03956 DUF340: Membrane prot 41.4 79 0.0017 30.0 6.5 65 244-317 23-92 (191)
41 PF03390 2HCT: 2-hydroxycarbox 39.6 2.4E+02 0.0051 30.2 10.2 51 242-292 91-141 (414)
42 PRK03562 glutathione-regulated 38.2 90 0.002 35.0 7.3 72 246-326 269-340 (621)
43 COG2056 Predicted permease [Ge 38.1 1.9E+02 0.004 30.6 8.8 17 328-344 134-150 (444)
44 KOG1650|consensus 37.5 11 0.00023 43.5 -0.1 196 245-442 86-296 (769)
45 PRK10669 putative cation:proto 32.0 1.2E+02 0.0027 33.3 7.1 73 247-328 278-350 (558)
46 TIGR02454 CbiQ_TIGR cobalt ABC 31.6 1.3E+02 0.0028 27.9 6.3 26 319-344 111-136 (198)
47 COG2035 Predicted membrane pro 31.4 1.2E+02 0.0025 30.6 6.0 50 110-172 187-236 (276)
48 PF01889 DUF63: Membrane prote 30.3 5.8E+02 0.013 25.7 13.2 68 82-174 4-71 (273)
49 TIGR01113 mtrE N5-methyltetrah 28.3 5.6E+02 0.012 25.6 9.9 56 110-177 123-178 (283)
50 PLN03159 cation/H(+) antiporte 27.5 2.1E+02 0.0046 33.3 8.3 71 247-326 324-396 (832)
51 PF01384 PHO4: Phosphate trans 27.1 7E+02 0.015 25.6 11.2 69 325-397 77-147 (326)
52 PF12249 AftA_C: Arabinofurano 26.9 60 0.0013 30.4 2.9 46 36-84 114-159 (178)
53 PF06738 DUF1212: Protein of u 24.1 3.4E+02 0.0075 25.0 7.7 61 376-438 128-188 (193)
54 PF05982 DUF897: Domain of unk 23.9 2.7E+02 0.0057 28.9 7.2 139 243-387 26-194 (327)
55 PF06946 Phage_holin_5: Phage 23.9 2.9E+02 0.0063 23.3 6.2 33 141-175 22-55 (93)
56 PF04018 DUF368: Domain of unk 23.7 1.8E+02 0.0039 29.0 5.9 40 128-174 197-236 (257)
57 COG5336 Uncharacterized protei 23.5 2.8E+02 0.006 24.1 6.1 42 370-417 46-87 (116)
58 PRK10457 hypothetical protein; 22.4 4.3E+02 0.0094 21.6 7.9 49 376-425 3-51 (82)
59 COG4605 CeuC ABC-type enteroch 22.4 5.7E+02 0.012 26.1 9.0 44 121-174 104-147 (316)
60 PF06295 DUF1043: Protein of u 21.7 82 0.0018 27.8 2.8 19 377-395 3-21 (128)
61 COG0786 GltS Na+/glutamate sym 21.1 1E+03 0.022 25.4 15.4 36 408-443 225-265 (404)
62 PRK12460 2-keto-3-deoxyglucona 20.0 9.3E+02 0.02 24.8 10.2 96 250-351 50-146 (312)
No 1
>KOG1965|consensus
Probab=100.00 E-value=3.8e-53 Score=443.75 Aligned_cols=289 Identities=41% Similarity=0.673 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCcee
Q psy16350 124 TTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTL 203 (469)
Q Consensus 124 T~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~ 203 (469)
++...+++.++++++++.|+++++| +||+|||+.++.+|++.|.++++.....-
T Consensus 34 ~~al~~~i~lL~l~iv~~hll~~~R--~~~l~Esv~~l~iGl~vG~vi~~~~~~~s------------------------ 87 (575)
T KOG1965|consen 34 SVALLFFILLLVLCIVLGHLLEETR--FRWLPESVAALFIGLLVGLVIRYSSGGKS------------------------ 87 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHhhhcCCCcc------------------------
Confidence 4455788889999999999999999 99999999999999999999999843210
Q ss_pred EEEccCCccccCCceEEEEEecccccccccccccccccCcccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHH
Q psy16350 204 WLKFPVKGASNINKTYGYRFRGEIVDLENNEIDLKATFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTT 283 (469)
Q Consensus 204 ~l~fge~~~s~~nda~~~~l~g~i~~~~~~~~~~~~~f~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~ 283 (469)
..+ . +...|+||.||.++||||+|++||+|++++||||+++|+.+|++||+
T Consensus 88 ----------~~~------------~-------~~~~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~ 138 (575)
T KOG1965|consen 88 ----------SRG------------K-------RILVFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTF 138 (575)
T ss_pred ----------ccc------------c-------eeEEecccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhccee
Confidence 000 0 12368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHHHHHHHHhhcCCCccchhhh---hheehhhhhh------
Q psy16350 284 ISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPLTILAIFNDLKVDVNLYALV---AIQNYGERYQ------ 354 (469)
Q Consensus 284 is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPVavlaI~~~~~v~~~L~~ll---Si~n~~~~~~------ 354 (469)
+++.++|..+|.+.. ..+..+++|.+||+|||++||||||+|+|||+|++++++||+++ |++||++++.
T Consensus 139 IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~ 216 (575)
T KOG1965|consen 139 ISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQ 216 (575)
T ss_pred eehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHH
Confidence 999999999987643 33456899999999999999999999999999999999999999 9999998753
Q ss_pred -ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q psy16350 355 -SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVL 433 (469)
Q Consensus 355 -~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~ 433 (469)
......+.....+.+..|++.++||..+|+++|++.++++|+...+++|.+|.+++++++|.+|++||++|+|||+|++
T Consensus 217 ~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVl 296 (575)
T KOG1965|consen 217 KFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVL 296 (575)
T ss_pred HHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 2334444455567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCcccccch-hhHhHHHHHHHhhC
Q psy16350 434 FCGMCQAHYTYNNLSSDSILPP-IIFHAGYSLKRVLM 469 (469)
Q Consensus 434 ~~Gi~l~~y~~~nls~~s~~~t-~~f~~~~sL~~~~~ 469 (469)
+||++|+||+|+|+|+++|..+ ..|+.++.+||+++
T Consensus 297 FcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfI 333 (575)
T KOG1965|consen 297 FCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFI 333 (575)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 67889999999873
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=2.3e-38 Score=342.01 Aligned_cols=262 Identities=32% Similarity=0.570 Sum_probs=222.4
Q ss_pred hhhhccCccccccchhHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEEEE
Q psy16350 144 LHWFRIPLRFLHETGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRF 223 (469)
Q Consensus 144 ~k~~rip~~~lhEt~l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~~l 223 (469)
+.|++ .+.+||+.+.++.|+++|.++...+..
T Consensus 27 ~~~~~--~~~lP~s~llil~GlllG~i~~~~~~~---------------------------------------------- 58 (559)
T TIGR00840 27 LTHKV--IRAVPESVLLIVYGLLVGGIIKASPHI---------------------------------------------- 58 (559)
T ss_pred HHHhh--cccCCHHHHHHHHHHHHHHHHHcCCCC----------------------------------------------
Confidence 34555 668999999999999999988755210
Q ss_pred ecccccccccccccccccCcccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy16350 224 RGEIVDLENNEIDLKATFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNL 303 (469)
Q Consensus 224 ~g~i~~~~~~~~~~~~~f~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~ 303 (469)
+...+||++|+.++||||+|++|++++++.|++|+++|+.+|++|++++++++|..+|++.+..+..
T Consensus 59 -------------~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~ 125 (559)
T TIGR00840 59 -------------DPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFG 125 (559)
T ss_pred -------------ccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1135789999999999999999999999999999999999999999999999999999876433211
Q ss_pred CCCCCHHHHHHhhhhcccccHHHHHHHHhhcCCCccchhhh---hheehhhhhh-------c-c--CCCcchhHHHHHHH
Q psy16350 304 KSGFTFLDSLYFGALISPTDPLTILAIFNDLKVDVNLYALV---AIQNYGERYQ-------S-G--TGGFEANAFLLAVG 370 (469)
Q Consensus 304 ~~~l~~~~aLlfGAiiSaTDPVavlaI~~~~~v~~~L~~ll---Si~n~~~~~~-------~-~--~~~~~~~~~~~~i~ 370 (469)
..+++|.+|++|||++||||||+|++++|+.++|+++++++ |++||+.++. . . .+..+..++...+.
T Consensus 126 ~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~ 205 (559)
T TIGR00840 126 SIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCA 205 (559)
T ss_pred ccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 23689999999999999999999999999999999999999 9999998642 1 1 12333345566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhcccCCCCcc
Q psy16350 371 DFIGIFSLSLFIGAIMGCLTAFLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYNNLSSD 450 (469)
Q Consensus 371 ~fl~~~~gsi~iG~~~G~l~~~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~~nls~~ 450 (469)
.|+...+||+++|+++|++.++++|+.+. .+..|+.++++++|++|++||.+|+||++|+++||++++||.+.|++++
T Consensus 206 ~f~~~~~GGiliG~v~G~l~~~l~r~~~~--~~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~ 283 (559)
T TIGR00840 206 SFFVVTCGGLLVGVVFGFLVAFITRFTHH--IRQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRR 283 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHH
Confidence 88888899999999999999999998753 3367899999999999999999999999999999999999999999998
Q ss_pred cccch-hhHhHHHHHHHhh
Q psy16350 451 SILPP-IIFHAGYSLKRVL 468 (469)
Q Consensus 451 s~~~t-~~f~~~~sL~~~~ 468 (469)
++... .+++.+++++|.+
T Consensus 284 ~~~~~~~f~~~ls~l~e~~ 302 (559)
T TIGR00840 284 SQTTIKYFMKMLSSLSETL 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 87654 6777888888865
No 3
>KOG1966|consensus
Probab=100.00 E-value=7.3e-40 Score=342.20 Aligned_cols=254 Identities=31% Similarity=0.603 Sum_probs=221.5
Q ss_pred cccccchhHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEEEEeccccccc
Q psy16350 152 RFLHETGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRFRGEIVDLE 231 (469)
Q Consensus 152 ~~lhEt~l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~~l~g~i~~~~ 231 (469)
.++||+++.+++|++.|.++...+-.+
T Consensus 66 ~i~PES~lLI~~Gl~lG~ii~~~~~~~----------------------------------------------------- 92 (670)
T KOG1966|consen 66 KIVPESCLLIILGLVLGGIIKALATIA----------------------------------------------------- 92 (670)
T ss_pred ccCchhHHHHHHHHHHHHHHHhhhccc-----------------------------------------------------
Confidence 479999999999999999999774221
Q ss_pred ccccccccccCcccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHH
Q psy16350 232 NNEIDLKATFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLD 311 (469)
Q Consensus 232 ~~~~~~~~~f~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~ 311 (469)
...++|++||.++||||+++|||.|+.|.|+.|+++|+++|++||+++++.+|..+|++.+. +.+.-..++.+
T Consensus 93 ------~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~-glf~~~~glld 165 (670)
T KOG1966|consen 93 ------PFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLS-GLFGMSIGLLD 165 (670)
T ss_pred ------cccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCchHHH
Confidence 12467999999999999999999999999999999999999999999999999999988753 22222377999
Q ss_pred HHHhhhhcccccHHHHHHHHhhcCCCccchhhh---hheehhhhhh----------ccCCCcchhHHHHHHHHHHHHHHH
Q psy16350 312 SLYFGALISPTDPLTILAIFNDLKVDVNLYALV---AIQNYGERYQ----------SGTGGFEANAFLLAVGDFIGIFSL 378 (469)
Q Consensus 312 aLlfGAiiSaTDPVavlaI~~~~~v~~~L~~ll---Si~n~~~~~~----------~~~~~~~~~~~~~~i~~fl~~~~g 378 (469)
-|+||+++||.|||||+|+|+|+||++-|+.++ |++||++... ....+....+....+.+|+.+.+|
T Consensus 166 ~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslG 245 (670)
T KOG1966|consen 166 ILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLG 245 (670)
T ss_pred HHHHHHHHHhcCchhhhhhhhhhccccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecC
Confidence 999999999999999999999999999999999 9999997421 122344444555678899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhcccCCCCcccccch-hh
Q psy16350 379 SLFIGAIMGCLTAFLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYNNLSSDSILPP-II 457 (469)
Q Consensus 379 si~iG~~~G~l~~~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~~nls~~s~~~t-~~ 457 (469)
|+++|+++|+++++.+|+++ +.+.+|+.+.+.++|++|+.||.+|+|||+|+.+||+.|.+|...|+|+++.... ++
T Consensus 246 G~lvGivfafl~sl~tkft~--~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~ 323 (670)
T KOG1966|consen 246 GALVGIVFAFLASLVTKFTK--HVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYF 323 (670)
T ss_pred chhHHHHHHHHHHHHHHhhc--ceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999999999987 5677899999999999999999999999999999999999999999999998876 55
Q ss_pred HhHHHHHHHh
Q psy16350 458 FHAGYSLKRV 467 (469)
Q Consensus 458 f~~~~sL~~~ 467 (469)
...++|.+|-
T Consensus 324 ~K~lss~sEt 333 (670)
T KOG1966|consen 324 MKMLSSLSET 333 (670)
T ss_pred HHHHHhccch
Confidence 5688888774
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=2.3e-29 Score=271.24 Aligned_cols=217 Identities=26% Similarity=0.391 Sum_probs=183.9
Q ss_pred ccCcccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhc
Q psy16350 240 TFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALI 319 (469)
Q Consensus 240 ~f~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAii 319 (469)
.+||+.++.++|||++|++|++++++.++||+++++.+|++|+++++++++..+|++. +++|..|+++||++
T Consensus 45 ~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~~~--------~l~~~~alllGail 116 (525)
T TIGR00831 45 PLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWIL--------GIPLALALILGAVL 116 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cccHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999999999999999998888742 78999999999999
Q ss_pred ccccHHHHHHHHhhcCCCccchhhh---hheehhhhhh-------ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 320 SPTDPLTILAIFNDLKVDVNLYALV---AIQNYGERYQ-------SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCL 389 (469)
Q Consensus 320 SaTDPVavlaI~~~~~v~~~L~~ll---Si~n~~~~~~-------~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l 389 (469)
|||||+++.+++|+.++|+++.+++ |++||+.++. ...+. ...+..+.+..|++.+.+|+++|+++|++
T Consensus 117 s~TDpvav~~il~~~~~p~rl~~il~gESllND~~alvlf~~~~~~~~~~-~~~~~~~~~~~f~~~~~~gi~vG~~~g~~ 195 (525)
T TIGR00831 117 SPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVFAIAVAVALGK-GVFDPLNAALDFAVVCVGGIAAGLAVGYL 195 (525)
T ss_pred CCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 9999997642 11110 11234456788999999999999999999
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhcccC-CCCcccccch-hhHhHHHHHHHh
Q psy16350 390 TAFLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYN-NLSSDSILPP-IIFHAGYSLKRV 467 (469)
Q Consensus 390 ~~~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~~-nls~~s~~~t-~~f~~~~sL~~~ 467 (469)
..++.|+.. +++..+..++++++|.+|.+||.+|.||++|+++||++++|+.+. +.+++.|... .+.+....+++.
T Consensus 196 ~~~l~~~~~--~~~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~ 273 (525)
T TIGR00831 196 AYRLLRAKI--DDPLVEIALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNG 273 (525)
T ss_pred HHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 998886432 456778999999999999999999999999999999999999876 6777766655 444555555554
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3e-28 Score=256.38 Aligned_cols=217 Identities=29% Similarity=0.451 Sum_probs=186.1
Q ss_pred ccCcccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhc
Q psy16350 240 TFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALI 319 (469)
Q Consensus 240 ~f~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAii 319 (469)
.+|||.|..++|||++|++|+++|+++++|+++++..+++++++++++++|...|++. | +++|..|+++||++
T Consensus 56 ~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~---~----~i~~~~a~l~gAil 128 (429)
T COG0025 56 ELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLL---P----GIPLAAAFLLGAIL 128 (429)
T ss_pred cCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---C----ChhHHHHHHHhHHh
Confidence 4678999999999999999999999999999999999999999999999999999874 2 88999999999999
Q ss_pred ccccHHHHHHHHhhcCCCccchhhh---hheehhhhhh---------ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 320 SPTDPLTILAIFNDLKVDVNLYALV---AIQNYGERYQ---------SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMG 387 (469)
Q Consensus 320 SaTDPVavlaI~~~~~v~~~L~~ll---Si~n~~~~~~---------~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G 387 (469)
||||||++.+++++.++|+|+++++ |++||+.++. ...+.++ .......|++.+.+|+++|.++|
T Consensus 129 spTDPv~v~~i~~~~~vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~---~~~~~~~fl~~~~~g~~~G~~iG 205 (429)
T COG0025 129 SPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFS---LGWALLLFLIEALGGILLGLLLG 205 (429)
T ss_pred cCCCchhhHHHHhcCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCc---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999998653 1122222 45678899999999999999999
Q ss_pred HHHHHHHHhhhcC--CCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhcccCCCCccc-ccchh-hHhHHHH
Q psy16350 388 CLTAFLTKFTRVR--DFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYNNLSSDS-ILPPI-IFHAGYS 463 (469)
Q Consensus 388 ~l~~~l~k~~~~~--~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~~nls~~s-~~~t~-~f~~~~s 463 (469)
++..+++|+.+.+ .++..|..+++..++.+|.+||.+|.||++|++++|++.+++.+.|.++.+ |...+ +.+....
T Consensus 206 ~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~ 285 (429)
T COG0025 206 YLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDF 285 (429)
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHH
Confidence 9999999987543 356789999999999999999999999999999999999855566666533 55544 4444444
Q ss_pred HHH
Q psy16350 464 LKR 466 (469)
Q Consensus 464 L~~ 466 (469)
+.+
T Consensus 286 ~ln 288 (429)
T COG0025 286 LLN 288 (429)
T ss_pred HHH
Confidence 443
No 6
>KOG1965|consensus
Probab=99.95 E-value=2.4e-28 Score=257.20 Aligned_cols=131 Identities=31% Similarity=0.382 Sum_probs=114.4
Q ss_pred cccccCcccccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccc
Q psy16350 75 LKATFDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFL 154 (469)
Q Consensus 75 ~~~~f~p~~ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~l 154 (469)
+-.+|+|+.||++|||||||++||+|||++| |||+++|+.+|+.||++|++++|..++ +++....+
T Consensus 92 ~~~~f~~~~ff~vLLPpiif~sgy~l~k~~f----F~n~~si~~fa~~Gt~IS~~~ig~gv~------~~~~~~~~---- 157 (575)
T KOG1965|consen 92 RILVFSPDLFFLVLLPPIIFNSGYSLKKKQF----FRNIGSILLFAIFGTFISAVIIGAGVY------LLGFGLLI---- 157 (575)
T ss_pred eeEEecccHHHHHhhchhhhcccceechhhh----hhhhHHHHHhhhcceeeehhHHhhHHH------HHhccccc----
Confidence 3358999999999999999999999999996 999999999999999999998887543 22222211
Q ss_pred ccchhHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEEEEecccccccccc
Q psy16350 155 HETGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRFRGEIVDLENNE 234 (469)
Q Consensus 155 hEt~l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~~l~g~i~~~~~~~ 234 (469)
-++.+.+|+.||+++||||||+++ ++|||+++||+||+++||| |++|||+++|+...+++++...
T Consensus 158 --~~~~f~d~L~fGaliSATDPVtvL----------aIfnel~vd~~Ly~LVFGE---SvLNDAvsIVlf~~i~~~~~~~ 222 (575)
T KOG1965|consen 158 --YDLSFKDCLAFGALISATDPVTVL----------AIFNELGVDPKLYTLVFGE---SVLNDAVSIVLFNTIQKFQLGS 222 (575)
T ss_pred --ccccHHHHHHHhhHhcccCchHHH----------HHHHHhCCCcceeeeeecc---hhccchhHHHHHHHHHHHccCC
Confidence 245789999999999999999999 9999999999999999999 9999999999999988875544
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.94 E-value=3.1e-25 Score=243.14 Aligned_cols=192 Identities=19% Similarity=0.233 Sum_probs=161.8
Q ss_pred ccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHH
Q psy16350 246 FFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPL 325 (469)
Q Consensus 246 ff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPV 325 (469)
+..+.|++++|.+|++++++.++++|+++.+++++++++++++++++.|+++. +++|..|+++|||++|||||
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-------GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-------GLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHhhhcCCcHH
Confidence 77899999999999999999999999999999999999999999999887742 78999999999999999999
Q ss_pred HHHHHHh---hcCCCccchhhh---hheehhhhhhc--------cCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 326 TILAIFN---DLKVDVNLYALV---AIQNYGERYQS--------GTGGFEA-NAFLLAVGDFIGIFSLSLFIGAIMGCLT 390 (469)
Q Consensus 326 avlaI~~---~~~v~~~L~~ll---Si~n~~~~~~~--------~~~~~~~-~~~~~~i~~fl~~~~gsi~iG~~~G~l~ 390 (469)
++.++++ ..++|++++.++ |++||+.+++. ....... ....+.+..+++.+++|+++|+++|++.
T Consensus 147 LAssV~kg~~~~rvP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~ 226 (810)
T TIGR00844 147 LAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCG 226 (810)
T ss_pred HHHHHHhccccccCChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 568999999999 99999987531 1111111 1112346789999999999999999999
Q ss_pred HHHHHhhhcCC--CchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhccc
Q psy16350 391 AFLTKFTRVRD--FPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTY 444 (469)
Q Consensus 391 ~~l~k~~~~~~--~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~ 444 (469)
+++.++.+.++ .+.....+.+.+++++|.+|+.+|.||++|+++||++++|..+
T Consensus 227 ~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~ 282 (810)
T TIGR00844 227 RKAIRFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGW 282 (810)
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccc
Confidence 99998775332 2222355678899999999999999999999999999998764
No 8
>KOG1966|consensus
Probab=99.93 E-value=2.4e-26 Score=241.14 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=113.7
Q ss_pred ccccCcccccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccc
Q psy16350 76 KATFDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLH 155 (469)
Q Consensus 76 ~~~f~p~~ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lh 155 (469)
....||++||.+||||||++|||+||+|.| |.|+|||++||++||.|+.+.+|..+|++....+|+..
T Consensus 93 ~~~L~s~vFFlyLLPPIvlDAGYfMp~r~F----f~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-------- 160 (670)
T KOG1966|consen 93 PFFLESDVFFLYLLPPIVLDAGYFMPNRAF----FENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-------- 160 (670)
T ss_pred cccccccchhhhhcCHHHhcccccCccHHH----HhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--------
Confidence 356899999999999999999999999996 99999999999999999999999999998866666531
Q ss_pred cchhHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEEEEeccc
Q psy16350 156 ETGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRFRGEI 227 (469)
Q Consensus 156 Et~l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~~l~g~i 227 (469)
..+++-|+||++|++.|||+|| ++|+|+||++.||+++||| |++||||+.+|..-.
T Consensus 161 ---~glld~LlFgSLIsAVDPVAVL----------aVFEEihVNe~LfI~VFGE---SLlNDaVTVVLY~~f 216 (670)
T KOG1966|consen 161 ---IGLLDILLFGSLISAVDPVAVL----------AVFEEIHVNEVLFIIVFGE---SLLNDAVTVVLYNMF 216 (670)
T ss_pred ---chHHHHHHHHHHHHhcCchhhh----------hhhhhhccccEEEeeeehh---hhhcCceEEehHHHH
Confidence 4578899999999999999999 9999999999999999999 999999999977553
No 9
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.87 E-value=7.5e-21 Score=207.13 Aligned_cols=210 Identities=20% Similarity=0.235 Sum_probs=171.3
Q ss_pred ccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhccccc
Q psy16350 244 EIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTD 323 (469)
Q Consensus 244 ~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTD 323 (469)
+.+..+.|++|+|++|+++|++.+++++++++.+|++|+++++++++...+++. +++|.+|+++||++|+||
T Consensus 60 ~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~--------g~~~~~alllgai~s~Td 131 (562)
T PRK05326 60 YLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL--------GLDWLEGLLLGAIVGSTD 131 (562)
T ss_pred HHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHhhhhccCc
Confidence 457789999999999999999999999999999999999999999888777654 789999999999999999
Q ss_pred HHHHHHHHhhcC--CCccchhhh---hheehhhhhh--------ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 324 PLTILAIFNDLK--VDVNLYALV---AIQNYGERYQ--------SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLT 390 (469)
Q Consensus 324 PVavlaI~~~~~--v~~~L~~ll---Si~n~~~~~~--------~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~ 390 (469)
|+++.+++++.+ .++++..++ |.+||..++. ...+. +... +..+..++..+.+|+++|+++|++.
T Consensus 132 ~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~G~~~g~l~ 209 (562)
T PRK05326 132 AAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGE-TGLS-WGFLLLFLQQFGLGALIGLLGGWLL 209 (562)
T ss_pred hHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCC-Ccch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 899999888 9999986531 11111 1111 2346678889999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhcccCCCCcccccchhhHhHHHHHHHhh
Q psy16350 391 AFLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYNNLSSDSILPPIIFHAGYSLKRVL 468 (469)
Q Consensus 391 ~~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~~nls~~s~~~t~~f~~~~sL~~~~ 468 (469)
.+++|+.+.. .+..+..+.+++++++|.+||.+|.||++|++++|++++|..... .+...++.+...+++|.+
T Consensus 210 ~~l~~~~~~~-~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~----~~~i~~~~~~l~~l~~~~ 282 (562)
T PRK05326 210 VQLLNRIALP-AEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRH----RHSILRFFDGLAWLAQIG 282 (562)
T ss_pred HHHHHhccCc-hhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccc----hHHHHHHHHHHHHHHHHH
Confidence 9998876432 234567888999999999999999999999999999999854221 122345666677777764
No 10
>KOG4505|consensus
Probab=99.87 E-value=1.4e-20 Score=185.93 Aligned_cols=271 Identities=18% Similarity=0.194 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHHHHHHHHhhhhh-hccCCCCcccccccCCCCccccc
Q psy16350 117 ARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIYGLIVGALIR-YTGSTTPLLHIPVVPENSSQLHQ 195 (469)
Q Consensus 117 ~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~gLifGaiis-atdpvt~l~~~~~~~~~~a~f~~ 195 (469)
+.++..|...+++. +.+..+|++- ++.|+.++.+-|+++|...- ..||-..
T Consensus 13 ~al~~~g~F~slF~--------l~S~yikekL----llgEa~va~itGlI~Gphvlnlfdp~~w---------------- 64 (467)
T KOG4505|consen 13 LALAASGGFVSLFG--------LASLYIKEKL----LLGEATVAVITGLIFGPHVLNLFDPNSW---------------- 64 (467)
T ss_pred HHHHHHhhHHHHHH--------HHHHHHHHhH----hccchHHhhhhheeechhhhhhcCCccc----------------
Confidence 35666666555432 2346677765 89999999999999998653 2333110
Q ss_pred CCCCCceeEEEccCCccccCCceEEEEEecccccccccccccccccCcccccccchhHHhhhhhhcCchHHHHhhhhHHH
Q psy16350 196 LSLPPDTLWLKFPVKGASNINKTYGYRFRGEIVDLENNEIDLKATFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAIL 275 (469)
Q Consensus 196 l~v~~~l~~l~fge~~~s~~nda~~~~l~g~i~~~~~~~~~~~~~f~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il 275 (469)
=|+ +.-..-+-++.|..-+|.+|.+++++++.+||.++.
T Consensus 65 -------------------gn~----------------------d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~ 103 (467)
T KOG4505|consen 65 -------------------GNK----------------------DYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIF 103 (467)
T ss_pred -------------------cCc----------------------chhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHH
Confidence 010 011234678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHHHHHHHHhhc----CCCccchhhh---hhee
Q psy16350 276 TFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPLTILAIFNDL----KVDVNLYALV---AIQN 348 (469)
Q Consensus 276 ~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPVavlaI~~~~----~v~~~L~~ll---Si~n 348 (469)
.+..+-+++.+++.+..+|.+.+ ++++..+++++|+++||||+...++.++- ++|+++++++ |..|
T Consensus 104 vlllpVmi~gwlvs~~fvy~l~p-------~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcN 176 (467)
T KOG4505|consen 104 VLLLPVMIIGWLVSFGFVYALIP-------NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCN 176 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCC
Confidence 99999999999999999998763 88999999999999999999999999853 5999999999 9999
Q ss_pred hhhhhhc---------cCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHH--HHHHHHHHH
Q psy16350 349 YGERYQS---------GTGG-FEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFTRVRDFPLLES--ALFVLMSYS 416 (469)
Q Consensus 349 ~~~~~~~---------~~~~-~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k~~~~~~~~~~e~--~l~l~~~y~ 416 (469)
|+.+++. .... -..-+ +.+...++.++.|.++|.++|++.+..+|+.+.++-.+.|. .+.+.++++
T Consensus 177 DGMaipflflai~Ll~h~~~r~~~rd--wv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lf 254 (467)
T KOG4505|consen 177 DGMAIPFLFLAIDLLRHKPRRKAGRD--WVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALF 254 (467)
T ss_pred CCcchhHHHHHHHHHhcCchhccCCc--eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9987541 1111 01112 35677899999999999999999999999876544444555 445677888
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhhcccCCCCcccccchhhHhHHHHHH
Q psy16350 417 TFLIAEASDLTGVVAVLFCGMCQAHYTYNNLSSDSILPPIIFHAGYSLK 465 (469)
Q Consensus 417 sy~lAE~lg~SGIlAv~~~Gi~l~~y~~~nls~~s~~~t~~f~~~~sL~ 465 (469)
+-++.+.+|.+..+-.+++|++.++..|.....++.....+.|++.|++
T Consensus 255 c~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~s 303 (467)
T KOG4505|consen 255 CMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLS 303 (467)
T ss_pred HhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHH
Confidence 8889999999999999999999999988865544444456666666654
No 11
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.85 E-value=9.4e-21 Score=192.80 Aligned_cols=209 Identities=21% Similarity=0.259 Sum_probs=176.3
Q ss_pred cccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccH
Q psy16350 245 IFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDP 324 (469)
Q Consensus 245 vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDP 324 (469)
..-.+.|..|+|++|+..+.+.++...++.+.+|.+|+++++..+|.+.++.. +++|.+++++||++.+||.
T Consensus 62 ~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll--------~l~wle~~LiGAiVgSTDA 133 (574)
T COG3263 62 MVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL--------NLDWLEGLLIGAIVGSTDA 133 (574)
T ss_pred HHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHhhccccH
Confidence 34567899999999999999999999999999999999999999999988875 8899999999999999999
Q ss_pred HHHHHHHhhcCCCccchhhh---hheehhhhhh-------ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 325 LTILAIFNDLKVDVNLYALV---AIQNYGERYQ-------SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLT 394 (469)
Q Consensus 325 VavlaI~~~~~v~~~L~~ll---Si~n~~~~~~-------~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~ 394 (469)
++|.+++++.+.++++.+.+ |..||..++- ...+.-+.-++. .+..|++++..|.++|...|++..++.
T Consensus 134 AAVF~lL~~~nl~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~~-~ll~f~~q~glG~l~G~~gg~l~~~~I 212 (574)
T COG3263 134 AAVFSLLGGKNLNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWG-FLLGFLQQFGLGLLLGLGGGKLLLQLI 212 (574)
T ss_pred HHHHHHHccCChhhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCHH-HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999987531 011111112223 344599999999999999999999998
Q ss_pred HhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhcccCCCCccccc-chhhHhHHHHHHHhhC
Q psy16350 395 KFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYNNLSSDSIL-PPIIFHAGYSLKRVLM 469 (469)
Q Consensus 395 k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~~nls~~s~~-~t~~f~~~~sL~~~~~ 469 (469)
++...+ ..+.+++.++.+++.|.+++++|.||++|+..||+..+|...+ +|. .-++++-+.|+|||.|
T Consensus 213 nr~nLd--~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~-----~r~~I~~f~dG~twlaQI~M 281 (574)
T COG3263 213 NRINLD--SGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIR-----ARHGILRFFDGLAWLAQILM 281 (574)
T ss_pred Hhhccc--cchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcch-----hHHHHHHHhccHHHHHHHHH
Confidence 876443 4567899999999999999999999999999999999985422 122 3388899999999975
No 12
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.74 E-value=5.5e-19 Score=191.55 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=108.7
Q ss_pred ccccCcccccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccc
Q psy16350 76 KATFDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLH 155 (469)
Q Consensus 76 ~~~f~p~~ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lh 155 (469)
...||||+||.++||||+|++||++++|.| +||.++|+.+|+.||+++.+++|..++.++....++
T Consensus 60 ~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f----~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~---------- 125 (559)
T TIGR00840 60 PPTLDSSYFFLYLLPPIVLDAGYFMPQRNF----FENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFG---------- 125 (559)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------
Confidence 457999999999999999999999999996 999999999999999999999999887654222111
Q ss_pred cchhHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEEEEecc
Q psy16350 156 ETGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRFRGE 226 (469)
Q Consensus 156 Et~l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~~l~g~ 226 (469)
..++.+..++++|+++++|||++++ ++++++++|+.++.+++|| |.+||++++++.+.
T Consensus 126 ~~~l~~~~allfGAiiSaTDPVAVl----------ai~~~~~v~~~L~~ll~gE---SllNDavaIVLf~~ 183 (559)
T TIGR00840 126 SIDIGLLDNLLFGSLISAVDPVAVL----------AVFEEYHVNEKLYIIIFGE---SLLNDAVTVVLYNT 183 (559)
T ss_pred ccCCCHHHHHHHhHHhcCCchHHHH----------HHHHhcCCCcchhhheehh---hhhhccHHHHHHHH
Confidence 1245677899999999999999999 8999999999999999999 99999999876544
No 13
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.66 E-value=4.1e-15 Score=147.73 Aligned_cols=188 Identities=12% Similarity=0.153 Sum_probs=145.7
Q ss_pred ccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhccccc
Q psy16350 244 EIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTD 323 (469)
Q Consensus 244 ~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTD 323 (469)
+.+-.+-+..++|.+|+++|.++++|+.+.+...+..+++++++.++....... ++++.+++++|+++++||
T Consensus 44 ~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~lg~~ls~Ts 115 (273)
T TIGR00932 44 NHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLL--------GLALGAAVVIGIILALSS 115 (273)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHhH
Confidence 346678889999999999999999999999999999999999777776544432 679999999999999999
Q ss_pred HHHHHHHHhhcCC-Cccchhhh---hheehhhhhh-------ccC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 324 PLTILAIFNDLKV-DVNLYALV---AIQNYGERYQ-------SGT-GGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTA 391 (469)
Q Consensus 324 PVavlaI~~~~~v-~~~L~~ll---Si~n~~~~~~-------~~~-~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~ 391 (469)
|..+.++++|++. +.+...++ +++||..+.. ... .+.+ .......+.....+.++.|.+.++...
T Consensus 116 ~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
T TIGR00932 116 TAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTE---HVALALLLLKVFLAFLLLVLLGRWLLR 192 (273)
T ss_pred HHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 55666665 7778876431 111 1111 112233344555566677777788888
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhc
Q psy16350 392 FLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHY 442 (469)
Q Consensus 392 ~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y 442 (469)
++.|+.+.++....+...++.+.+..+.++|.+|.|++++++.+|+++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aGl~~~~~ 243 (273)
T TIGR00932 193 PVLRLTAELRPSELFTAGSLLLMFGSAYFADLLGLSMALGAFLAGVVLSES 243 (273)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcCC
Confidence 887766544444567788888999999999999999999999999999984
No 14
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.56 E-value=5.5e-16 Score=160.41 Aligned_cols=197 Identities=20% Similarity=0.291 Sum_probs=50.3
Q ss_pred CcccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhccc
Q psy16350 242 DPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISP 321 (469)
Q Consensus 242 ~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSa 321 (469)
+.+.+..+.+++++|++|+++|.+.++|+++..+..++.++.+++.+++..++.... ..++++.+++++|+++++
T Consensus 47 ~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~al~l~~~~~~ 121 (380)
T PF00999_consen 47 SFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFILVGFLLSFFLF-----ILGLSWAEALLLGAILSA 121 (380)
T ss_dssp -S-SSHHHHS--SSHHHHTTGGGG------------------------------------------------TTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhHHHHHHHHhhc-----cchhhhHHHhhhHHhhhc
Confidence 357789999999999999999999999999999999999999999887777664210 128899999999999999
Q ss_pred ccHHHHHHHHhh-cCCCccchhhh---hheehhhhhhc------cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 322 TDPLTILAIFND-LKVDVNLYALV---AIQNYGERYQS------GTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTA 391 (469)
Q Consensus 322 TDPVavlaI~~~-~~v~~~L~~ll---Si~n~~~~~~~------~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~ 391 (469)
|||+.+.++++| .+.++++.+++ +.++|..+... ..+.....+..+....++.....++++|...|++..
T Consensus 122 ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (380)
T PF00999_consen 122 TSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLR 201 (380)
T ss_dssp --HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-----------------------------------------
T ss_pred ccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHH
Confidence 999999999954 56788998887 88888765321 111112233455666677777777777777777666
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhcccC
Q psy16350 392 FLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYN 445 (469)
Q Consensus 392 ~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~~ 445 (469)
+..|+. ++.+..+....+.+++..|.++|.+|.||+++++++|+++++...+
T Consensus 202 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~~ 253 (380)
T PF00999_consen 202 RLIRRA--SPSSEIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSNSPFA 253 (380)
T ss_dssp ------------------------------------------------------
T ss_pred Hhhhhc--cccchhhHHHHHHHHhhhccccccccccccceeeeeehcccccccc
Confidence 666553 1344567889999999999999999999999999999999965433
No 15
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.11 E-value=6.6e-09 Score=114.56 Aligned_cols=183 Identities=14% Similarity=0.122 Sum_probs=121.7
Q ss_pred cccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccH
Q psy16350 245 IFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDP 324 (469)
Q Consensus 245 vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDP 324 (469)
.+-.+-+..++|..|++++.+.+++..+.++.++..++++++.+++...+++ +++|..++++|..++.|++
T Consensus 58 ~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~---------g~~~~~a~~~g~~la~SST 128 (601)
T PRK03659 58 HFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLT---------DFSWQAAVVGGIGLAMSST 128 (601)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999999999999999987776655432 6789999999999999999
Q ss_pred HHHHHHHhhcCCCccch-hhh---hheehhhhhh-------ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy16350 325 LTILAIFNDLKVDVNLY-ALV---AIQNYGERYQ-------SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMG-CLTAF 392 (469)
Q Consensus 325 VavlaI~~~~~v~~~L~-~ll---Si~n~~~~~~-------~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G-~l~~~ 392 (469)
+.+..+++|.+..+.-. .+. .+++|-...+ ......+...+.... ..+ ..++..++.| ++...
T Consensus 129 aiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~ 203 (601)
T PRK03659 129 AMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIG-MKV----LAFAGMLIGGRYLLRP 203 (601)
T ss_pred HHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH-HHH----HHHHHHHHHHHHHHHH
Confidence 99999999988644322 221 3334432211 111111111122111 111 1111112222 34444
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhh
Q psy16350 393 LTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAH 441 (469)
Q Consensus 393 l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~ 441 (469)
++|+......+...+...+.+++.+-+++|.+|+|.++++|++|+++++
T Consensus 204 ~~~~~~~~~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~ 252 (601)
T PRK03659 204 LFRFIAASGVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAE 252 (601)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC
Confidence 5554432223334556666677777788999999999999999999987
No 16
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.08 E-value=1.1e-08 Score=113.18 Aligned_cols=185 Identities=13% Similarity=0.151 Sum_probs=124.7
Q ss_pred cccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccH
Q psy16350 245 IFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDP 324 (469)
Q Consensus 245 vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDP 324 (469)
.+-.+-+..++|..|++++.+.+++.++.++.++...+.+++.+.+...+++ +++|..++++|++++.|++
T Consensus 58 ~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~---------g~~~~~al~ig~~la~SSt 128 (621)
T PRK03562 58 HFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLL---------GLRWQVALLIGLGLALSST 128 (621)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHH
Confidence 3556677889999999999999999999999999999988887666554433 6789999999999999999
Q ss_pred HHHHHHHhhcCC-Cccchhhh---hheehhhhhh-------ccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy16350 325 LTILAIFNDLKV-DVNLYALV---AIQNYGERYQ-------SGT--GGFEANAFLLAVGDFIGIFSLSLFIGAIMG-CLT 390 (469)
Q Consensus 325 VavlaI~~~~~v-~~~L~~ll---Si~n~~~~~~-------~~~--~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G-~l~ 390 (469)
+.++.+++|.+. +.+..... .+++|....+ ... ........+..+.. .++.+++.++.| ++.
T Consensus 129 aiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~ 204 (621)
T PRK03562 129 AIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALK----VAGALALVVLGGRYVT 204 (621)
T ss_pred HHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 999999999874 33332222 4445543221 011 11111111111111 112222222333 345
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhc
Q psy16350 391 AFLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHY 442 (469)
Q Consensus 391 ~~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y 442 (469)
..++|+....+.+.......+.+++.+..++|.+|+|..+++|++|+++++.
T Consensus 205 ~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~ 256 (621)
T PRK03562 205 RPALRFVARSGLREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLASS 256 (621)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC
Confidence 5556654333334455677778888888999999999999999999999963
No 17
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=98.98 E-value=2.7e-10 Score=120.56 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=100.6
Q ss_pred cccCcccccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccc
Q psy16350 77 ATFDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHE 156 (469)
Q Consensus 77 ~~f~p~~ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhE 156 (469)
..+|||.|.++.+||+.|++|+++++++. .||..+|+..+..++.++.+.+|...+ |++.
T Consensus 55 ~~~~~el~~~l~l~ilLf~~g~~l~~~~l----~~~~~~I~~La~~~v~it~~~~g~~~~-----~l~~----------- 114 (429)
T COG0025 55 LELDPELFLVLFLAILLFAGGLELDLREL----RRVWRSILVLALPLVLITALGIGLLAH-----WLLP----------- 114 (429)
T ss_pred ccCChHHHHHHHHHHHHHHhHhcCCHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHhC-----------
Confidence 46899999999999999999999999996 899999999999999999888877543 3321
Q ss_pred chhHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEEEEe
Q psy16350 157 TGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRFR 224 (469)
Q Consensus 157 t~l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~~l~ 224 (469)
++.+..|+++|+++++|||+++. +++++.++|+.+..++.|| |++||+.++++.
T Consensus 115 -~i~~~~a~l~gAilspTDPv~v~----------~i~~~~~vp~ri~~iL~gE---Sl~ND~~giv~f 168 (429)
T COG0025 115 -GIPLAAAFLLGAILSPTDPVAVS----------PIFKRVRVPKRIRTILEGE---SLLNDGVGIVLF 168 (429)
T ss_pred -ChhHHHHHHHhHHhcCCCchhhH----------HHHhcCCCCHHHHHHHHHH---HHhhhHHHHHHH
Confidence 44577899999999999999998 8999999999999999999 999999987644
No 18
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=98.96 E-value=7.1e-08 Score=101.29 Aligned_cols=188 Identities=16% Similarity=0.191 Sum_probs=121.8
Q ss_pred ccccchhHHhhhhhhcCchHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccH
Q psy16350 246 FFNIILPPIIFHAGYSLKRKYFFKNLGA-ILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDP 324 (469)
Q Consensus 246 ff~ilLp~IlF~aG~~l~~~~f~~~~~~-Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDP 324 (469)
+-.+=.-.++|.+|+|.|.+.++|+.+. ....+..+............+.. .++++..+++.|++++.|+.
T Consensus 61 laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~g~~~~~al~lg~~l~~sS~ 132 (397)
T COG0475 61 LAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGI--------LGLSLIAALFLGAALALSST 132 (397)
T ss_pred HHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH--------hccChHHHHHHHHHHHHHHH
Confidence 4445566789999999999999999999 44444444444433222222211 17899999999999999999
Q ss_pred HHHHHHHhhcC-CCccchhhh---hheehhhhhh-------cc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 325 LTILAIFNDLK-VDVNLYALV---AIQNYGERYQ-------SG-TGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAF 392 (469)
Q Consensus 325 VavlaI~~~~~-v~~~L~~ll---Si~n~~~~~~-------~~-~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~ 392 (469)
..+..+++|+| .+.+..+++ .++.|-.+.. .. .+..+...+...+............+| -++..+
T Consensus 133 ~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g---~~l~~~ 209 (397)
T COG0475 133 AIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG---RYLLPP 209 (397)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 99999999986 344554444 3344433221 11 122221112222211111111111112 266666
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhccc
Q psy16350 393 LTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTY 444 (469)
Q Consensus 393 l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~ 444 (469)
+.|+....+.+.......+.+.+..-+++|.+|.|.++.++.+|++++...+
T Consensus 210 ~~r~~~~~~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~ 261 (397)
T COG0475 210 LFRRVAKTESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEY 261 (397)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhccccc
Confidence 7776554455667788889999999999999999999999999999988543
No 19
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.91 E-value=1.9e-07 Score=102.14 Aligned_cols=189 Identities=12% Similarity=0.145 Sum_probs=111.6
Q ss_pred ccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhccccc
Q psy16350 244 EIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTD 323 (469)
Q Consensus 244 ~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTD 323 (469)
+.+-.+-+..++|.+|+++|.+.+++........+..+++++.+ .+....... ++++..++++|+++|.|+
T Consensus 58 ~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~al~lg~~ls~tS 128 (558)
T PRK10669 58 PELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATL-LGMALSAVL--------GWSLMTGIVFGLCLSTAS 128 (558)
T ss_pred HHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHh--------CCCHHHHHHHHHHHHHHH
Confidence 45677788899999999999999998865555445555555543 333333222 689999999999999999
Q ss_pred HHHHHHHHhhcCC-Cccchhhh---hheehhhhh---------hcc--CCCcchhHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy16350 324 PLTILAIFNDLKV-DVNLYALV---AIQNYGERY---------QSG--TGGFEANAFL-LAVGDFIGIFSLSLFIGAIMG 387 (469)
Q Consensus 324 PVavlaI~~~~~v-~~~L~~ll---Si~n~~~~~---------~~~--~~~~~~~~~~-~~i~~fl~~~~gsi~iG~~~G 387 (469)
+..+..+++|.+. +.+...+. +++.|-... ... .+..+..... .............++++++..
T Consensus 129 ~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (558)
T PRK10669 129 TVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGR 208 (558)
T ss_pred HHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999884 44444443 444443211 000 1111111111 111111111111222333444
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHH-HHHHHHhhcCchhHHHHHHHHHHHhh
Q psy16350 388 CLTAFLTKFTRVRDFPLLESALFVLMSY-STFLIAEASDLTGVVAVLFCGMCQAH 441 (469)
Q Consensus 388 ~l~~~l~k~~~~~~~~~~e~~l~l~~~y-~sy~lAE~lg~SGIlAv~~~Gi~l~~ 441 (469)
++..++.|+.+..+.+.......+.++. +++..+|.+|+|.+++++.+|+++++
T Consensus 209 ~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~ 263 (558)
T PRK10669 209 RLVPWILARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE 263 (558)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC
Confidence 5555566554322222222333333333 34556799999999999999999986
No 20
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=98.81 E-value=8e-10 Score=119.88 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=98.6
Q ss_pred cccCcccccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccc
Q psy16350 77 ATFDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHE 156 (469)
Q Consensus 77 ~~f~p~~ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhE 156 (469)
..+|||+++.+.|||++|++|++++.+.+ .||..+++..|+.|+.++.+.++..++ |..
T Consensus 44 ~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l----~~~~~~i~~la~~~vlit~~~v~~~~~-----~~~------------ 102 (525)
T TIGR00831 44 VPLDREIVLFLFLPPLLFEAAMNTDLREL----RENFRPIALIAFLLVVVTTVVVGFSLN-----WIL------------ 102 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHh------------
Confidence 46899999999999999999999999996 899999999999999888877776432 221
Q ss_pred chhHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEEEEecc
Q psy16350 157 TGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYRFRGE 226 (469)
Q Consensus 157 t~l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~~l~g~ 226 (469)
++.+..++++|+++++|||+.+. +++++++++..+..++.|| |++||+.++++..-
T Consensus 103 -~l~~~~alllGails~TDpvav~----------~il~~~~~p~rl~~il~gE---SllND~~alvlf~~ 158 (525)
T TIGR00831 103 -GIPLALALILGAVLSPTDAVAVL----------GTFKSIRAPKKLSILLEGE---SLLNDGAALVVFAI 158 (525)
T ss_pred -cccHHHHHHHHHHhCCCCHHHHH----------HHHhcCCCCHHHHHHHhhh---hhhcchHHHHHHHH
Confidence 23456799999999999999988 8889999999999999999 99999988765443
No 21
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=98.61 E-value=1.6e-06 Score=99.05 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=121.0
Q ss_pred ccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhccccc
Q psy16350 244 EIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTD 323 (469)
Q Consensus 244 ~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTD 323 (469)
+.+-.+-+-.++|.+|+++|.+.++|+.+..+..++.+.++.+.+...+.+.+ .... ........++.+|..+|.|.
T Consensus 105 ~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~--~~~~~~~~~l~~g~alS~Ts 181 (832)
T PLN03159 105 ETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVS--RNVHQGTFILFLGVALSVTA 181 (832)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcc--cccchhHHHHHHHHHHHHhh
Confidence 45667778889999999999999999999999999999998876544443333 2211 00112445788999999999
Q ss_pred HHHHHHHHhhcCC-Cccchhhh---hheehhhhhh-------ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 324 PLTILAIFNDLKV-DVNLYALV---AIQNYGERYQ-------SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAF 392 (469)
Q Consensus 324 PVavlaI~~~~~v-~~~L~~ll---Si~n~~~~~~-------~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~ 392 (469)
...+..+++|+|. +.++..+. ++++|..+.. ......... ..+...+..+...+++.++.-.+..|
T Consensus 182 ~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~---~~l~~~l~~~~f~~~~~~v~r~~~~~ 258 (832)
T PLN03159 182 FPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSL---ASLWVLLSSVAFVLFCFYVVRPGIWW 258 (832)
T ss_pred HHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9899999999985 55565554 6666654321 111111110 11111111111111222223334445
Q ss_pred HHHhhhcC-CCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhh
Q psy16350 393 LTKFTRVR-DFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAH 441 (469)
Q Consensus 393 l~k~~~~~-~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~ 441 (469)
+.|+.... ........+.+++.+.+.+++|.+|++.++++|++|+++.+
T Consensus 259 ~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~ 308 (832)
T PLN03159 259 IIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN 308 (832)
T ss_pred HHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC
Confidence 55544221 12233455666777788889999999999999999999875
No 22
>PRK05326 potassium/proton antiporter; Reviewed
Probab=97.21 E-value=0.00089 Score=73.57 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=86.0
Q ss_pred ccccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHH
Q psy16350 82 EIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAV 161 (469)
Q Consensus 82 ~~ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~ 161 (469)
+.+-.+-|+.|.|++|++++.+.+ .||...++..|.+|..+..+.++... .|++. ...
T Consensus 60 ~~i~~l~L~~iLF~~Gl~~~~~~l----~~~~~~~~~la~~gv~~t~~~~g~~~-----~~l~g-------------~~~ 117 (562)
T PRK05326 60 YLVGNLALAVILFDGGLRTRWSSF----RPALGPALSLATLGVLITAGLTGLFA-----HWLLG-------------LDW 117 (562)
T ss_pred HHHHHHHHHHHHHcCccCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhc-------------CCH
Confidence 356678899999999999999985 89999999999999888776665532 24432 234
Q ss_pred HHHHHHhhhhhhccCCCCcccccccCCCCcccccCC--CCCceeEEEccCCccccCCceEEEEEe
Q psy16350 162 IYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLS--LPPDTLWLKFPVKGASNINKTYGYRFR 224 (469)
Q Consensus 162 ~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~--v~~~l~~l~fge~~~s~~nda~~~~l~ 224 (469)
..++++|++++.|||+.+. .+.++.+ .++.+-.++.+| |.+||..++.+.
T Consensus 118 ~~alllgai~s~Td~a~v~----------~iL~~~~l~l~~~v~~~l~~e---S~~nD~~ai~l~ 169 (562)
T PRK05326 118 LEGLLLGAIVGSTDAAAVF----------SLLRGKGLNLKERVASTLEIE---SGSNDPMAVFLT 169 (562)
T ss_pred HHHHHHhhhhccCchHHHH----------HHHhccCCCcchhHHhHhhhh---hhcccHHHHHHH
Confidence 6689999999999998877 6667777 788888899999 999998876544
No 23
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=96.86 E-value=0.011 Score=66.64 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=75.2
Q ss_pred ccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHHHH
Q psy16350 84 FFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIY 163 (469)
Q Consensus 84 ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~ 163 (469)
+..+-|+.+.|.+|..++++.. -++-.++..-+..+..+..++++++. .|++. ++.+..
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~L----rr~wrsV~rLl~~~M~lT~livAL~a-----~~Li~------------GL~~~~ 132 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYM----LKHWVSVTMLLVPVMTSGWLVIALFV-----WILVP------------GLNFPA 132 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHc------------CCCHHH
Confidence 5567899999999999999885 78888888887777666555555422 22321 334667
Q ss_pred HHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEE
Q psy16350 164 GLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGY 221 (469)
Q Consensus 164 gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~ 221 (469)
++++||++..|||+......+ -.++ .+++..+-.++=+| |.+||+.++
T Consensus 133 ALLLGAILAPTDPVLAssV~k------g~~~-~rvP~rLR~lL~~E---SGlNDGlAf 180 (810)
T TIGR00844 133 SLLMGACITATDPVLAQSVVS------GTFA-QKVPGHLRNLLSCE---SGCNDGLAF 180 (810)
T ss_pred HHHHHhhhcCCcHHHHHHHHh------cccc-ccCChHHHhHHhhh---hhcccHHHH
Confidence 999999999999986542111 1112 25667777788889 999988764
No 24
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.13 Score=51.86 Aligned_cols=181 Identities=17% Similarity=0.215 Sum_probs=101.7
Q ss_pred hHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHHHHHHHH
Q psy16350 252 PPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPLTILAIF 331 (469)
Q Consensus 252 p~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPVavlaI~ 331 (469)
-.++|-.|++.+.|++.... .+|++|.+.........-+++.+.. +|++...++||-.+|-.+.|..+.-+
T Consensus 66 iLLmFgvGLhfslkdLLavk----~iAipgAl~qia~at~lg~gL~~~l-----gws~~~glvfGlaLS~aSTVvllraL 136 (408)
T COG4651 66 ILLMFGVGLHFSLKDLLAVK----AIAIPGALAQIALATLLGMGLSSLL-----GWSFGTGIVFGLALSVASTVVLLRAL 136 (408)
T ss_pred HHHHHhcchheeHHHHhhHH----HHhcchHHHHHHHHHHHHhHHHHHc-----CCCcccceeeeehhhhHHHHHHHHHH
Confidence 34789999999988875432 3346666555544444333333322 89999999999999999999999999
Q ss_pred hhcCCCccch--hhh------------hheehhhhhhc--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy16350 332 NDLKVDVNLY--ALV------------AIQNYGERYQS--GTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGC-LTAFLT 394 (469)
Q Consensus 332 ~~~~v~~~L~--~ll------------Si~n~~~~~~~--~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~-l~~~l~ 394 (469)
+|.+.-+.-+ .-+ +++.-. +++. ...+....+....++.-+.....=++++.++|- +..|++
T Consensus 137 qEr~lidt~rG~iAiGwLiveDl~mVl~Lvllp-a~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~l 215 (408)
T COG4651 137 EERQLIDTQRGRIAIGWLIVEDLAMVLALVLLP-ALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWIL 215 (408)
T ss_pred HHhccccccCceEEEeehhHHHHHHHHHHHHhH-HHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765321111 111 111111 1111 111111111222222222222233455666664 556666
Q ss_pred HhhhcCCCchhHHHHHHHHHH-HHHHHHhhcCchhHHHHHHHHHHHhhc
Q psy16350 395 KFTRVRDFPLLESALFVLMSY-STFLIAEASDLTGVVAVLFCGMCQAHY 442 (469)
Q Consensus 395 k~~~~~~~~~~e~~l~l~~~y-~sy~lAE~lg~SGIlAv~~~Gi~l~~y 442 (469)
.+......+.+-+...+.+++ .+|+.+|.+|+|--+.++++|++++..
T Consensus 216 e~~a~tGsrElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es 264 (408)
T COG4651 216 ERVAATGSRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES 264 (408)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch
Confidence 554322222222333333333 467888999999999999999999753
No 25
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.03 E-value=4.9 Score=41.11 Aligned_cols=175 Identities=16% Similarity=0.127 Sum_probs=88.1
Q ss_pred CcccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhccc
Q psy16350 242 DPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISP 321 (469)
Q Consensus 242 ~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSa 321 (469)
++|....+....|.|..|++++.+++++..+..-. -..+...+..++-++.+.+.++.+.. .+-.+..++++=+++-.
T Consensus 28 ~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~-~l~~~~~~fvl~Pll~~~~~~l~~~~-~~~~l~~Gl~~~~~lPt 105 (313)
T PF13593_consen 28 KPEYVIKYGVALIFFISGLSLPTEELKAALRNWRL-HLFVQAFNFVLFPLLGFGLSRLFPAF-LPPELALGLLILACLPT 105 (313)
T ss_pred chhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHhhCCc
Confidence 34556667788899999999999999887665432 23345556666666666665544311 12235556666555555
Q ss_pred ccHHHHHHHHhhcCCCccchhhh-------hheehhhhhh--ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 322 TDPLTILAIFNDLKVDVNLYALV-------AIQNYGERYQ--SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAF 392 (469)
Q Consensus 322 TDPVavlaI~~~~~v~~~L~~ll-------Si~n~~~~~~--~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~ 392 (469)
|= .+.++.-+.-|=+..+.... +++....-.. ...+..+ .+..+.+.+.....+.-.++|.+.-...+.
T Consensus 106 Tv-~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~-~~~~~~~~~L~~~vllP~~~Gq~~r~~~~~ 183 (313)
T PF13593_consen 106 TV-SSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVS-IDYASVLIKLVLTVLLPLVLGQLLRRWVPK 183 (313)
T ss_pred hh-hHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 41 11122334444333332222 2222221111 1111111 223445555565555555555555544443
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHHHHHH
Q psy16350 393 LTKFTRVRDFPLLESALFVLMSYSTFLIA 421 (469)
Q Consensus 393 l~k~~~~~~~~~~e~~l~l~~~y~sy~lA 421 (469)
..++.+. ..........+.+.|.++.-+
T Consensus 184 ~~~~~~~-~~~~~~~~~ll~iv~~~fs~~ 211 (313)
T PF13593_consen 184 WVARHKK-PLSLLSQLALLLIVYSAFSSA 211 (313)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3322211 122234455567778877666
No 26
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=88.18 E-value=12 Score=40.07 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=85.6
Q ss_pred chhHHhhhhhhcCchHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccc
Q psy16350 250 ILPPIIFHAGYSLKRKYF-------FKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPT 322 (469)
Q Consensus 250 lLp~IlF~aG~~l~~~~f-------~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaT 322 (469)
+...-.|..|+|+|++.. +|..-+ +.=|+.|+++.++ .|..... .-.+..-=-++-+||
T Consensus 70 LMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPal-----iy~~~n~--------~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 70 LLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPAL-----IYVAVNL--------AGGGALRGWAIPTAT 135 (423)
T ss_pred hHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHH-----HHHHHhC--------Cchhhhhhhhhhhhh
Confidence 455567889999987543 222222 3445566666554 3443321 011111112466899
Q ss_pred cHHHHHHHHhhcC--CCccchhhh---hheehhhhhh----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 323 DPLTILAIFNDLK--VDVNLYALV---AIQNYGERYQ----SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFL 393 (469)
Q Consensus 323 DPVavlaI~~~~~--v~~~L~~ll---Si~n~~~~~~----~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l 393 (469)
|-+-++.++..++ +|..++..+ +++-|-.++. .-.++.+...+ . . .++ +...-++
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt~~i~~~~L---~-------~---a~~---~~~~l~~ 199 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYTSELNLEAL---L-------L---ALV---PLALFWL 199 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccCCCCCHHHH---H-------H---HHH---HHHHHHH
Confidence 9999999998764 788888666 6666654431 11222221111 0 0 001 1111122
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhh
Q psy16350 394 TKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAH 441 (469)
Q Consensus 394 ~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~ 441 (469)
+++.+.++ ....+.+....++..+..|....+|.+..|+++-.
T Consensus 200 l~~~~V~~-----~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~ 242 (423)
T PRK14853 200 LVQKRVRK-----WWLLLPLGVATWILVHESGVHATVAGVLLGFAVPV 242 (423)
T ss_pred HHHcCCch-----hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccc
Confidence 33222222 22233345577778889999999999999999954
No 27
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=84.61 E-value=0.079 Score=54.83 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=47.1
Q ss_pred cCcccccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccch
Q psy16350 79 FDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETG 158 (469)
Q Consensus 79 f~p~~ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~ 158 (469)
-+.|.+..+-++.++|.+|++++.+.. .||....+.-+..+.....+.++..++..+ .. .+
T Consensus 46 ~~~~~l~~i~l~~llF~~G~~~d~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~ 106 (380)
T PF00999_consen 46 PSFELLAEIGLAFLLFEAGLELDIKEL----RRNWRRALALGLVGFLLPFILVGFLLSFFL--FI-------------LG 106 (380)
T ss_dssp --S-SSHHHHS--SSHHHHTTGGGG-------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccc----ccccccccccccceeeehhhHHHHHHHHhh--cc-------------ch
Confidence 456789999999999999999999985 789888888888877776666454333111 00 12
Q ss_pred hHHHHHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCCceeEEEccCCccccCCceEEEE
Q psy16350 159 LAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGYR 222 (469)
Q Consensus 159 l~~~~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~~l~~l~fge~~~s~~nda~~~~ 222 (469)
.....++++|.+.+.|||+.+....+ ++-+.+.+.-.++.+| ++.||..+..
T Consensus 107 ~~~~~al~l~~~~~~ts~~~v~~~l~---------~~~~~~~~~~~~~~~~---~~i~d~~~i~ 158 (380)
T PF00999_consen 107 LSWAEALLLGAILSATSPAIVSPVLK---------ELGLLPSRLGRLLLSE---SVINDIIAII 158 (380)
T ss_dssp -------TTHHHHTT--HHHHHHHH----------HHHT-SSTTHHHHTTT---TTTTTTTTTT
T ss_pred hhhHHHhhhHHhhhcccccchhhhhh---------hhhcccccccchhhhh---chhhccchhh
Confidence 33455899999999999987763221 2223455555666777 8899886643
No 28
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=84.18 E-value=7.5 Score=36.35 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=46.4
Q ss_pred chhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCCCHHHHHHhhhhcccccHHHHH
Q psy16350 250 ILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFL-QLVPNLKSGFTFLDSLYFGALISPTDPLTIL 328 (469)
Q Consensus 250 lLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~-~~~~~~~~~l~~~~aLlfGAiiSaTDPVavl 328 (469)
++...+|..|.+++.+++++..+..- .-..|.+...++.-...|.+. .+ ++....+..|-++.+.-|.+..
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~-~l~~~l~~~~~i~Plla~~l~~~~-------~~~~~~~~~Gl~l~~~~P~~~~ 74 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPK-LLLIGLLAQFLIMPLLAFGLAWLL-------LPLSPALALGLLLVAACPGGPA 74 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHH-HHHHHHHHHHHHHHHHHHHHH-HH-------TT--HHHHHHHHHHHHS-B-TH
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHhcCCcHHH
Confidence 46678999999999999988776633 235577777777777777765 32 2345556666666666665555
Q ss_pred HHHh
Q psy16350 329 AIFN 332 (469)
Q Consensus 329 aI~~ 332 (469)
+-.-
T Consensus 75 s~~~ 78 (187)
T PF01758_consen 75 SNVF 78 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 29
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=82.97 E-value=25 Score=35.36 Aligned_cols=86 Identities=21% Similarity=0.170 Sum_probs=52.8
Q ss_pred chhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHHHHHH
Q psy16350 250 ILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPLTILA 329 (469)
Q Consensus 250 lLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPVavla 329 (469)
+|..++|..|.+++.+++++..+..- ....+++...++.-++.|.+.++. +..+.+..|.++.+.-|.++.+
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~-~~~~~~~~~~vi~Plla~~l~~~~-------~l~~~~~~glvL~~~~P~~~~s 84 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPW-GVIIGLLAQYGIMPLTGFLLAKVF-------KLPPELAVGVLIVGCCPGGTAS 84 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHheeeCCCchHH
Confidence 38889999999999999988765321 123344555656666666555432 2345566677766666666555
Q ss_pred HH--hhcCCCccchhh
Q psy16350 330 IF--NDLKVDVNLYAL 343 (469)
Q Consensus 330 I~--~~~~v~~~L~~l 343 (469)
.. +..|-|.++...
T Consensus 85 ~v~t~~~~gn~~la~~ 100 (286)
T TIGR00841 85 NVFTYLLKGDMALSIS 100 (286)
T ss_pred HHHHHHhCCCHhhhhH
Confidence 44 344555555433
No 30
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=82.54 E-value=35 Score=35.12 Aligned_cols=142 Identities=18% Similarity=0.113 Sum_probs=80.1
Q ss_pred ccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHH
Q psy16350 246 FFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPL 325 (469)
Q Consensus 246 ff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPV 325 (469)
....++..|.|--|.+++++++++..+.... -..|...+..+.-++.+++.++. ++.+-+..|-++-.+-|-
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~-vligl~~qfvlmPlla~~~~~~~-------~l~~~l~~Gl~ll~~~Pg 110 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRL-VLIGLAAQFVLMPLLALLLAKLF-------PLPPELAVGLLLLGCCPG 110 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHhHHheeeCCC
Confidence 3478899999999999999999887755433 25577777777777777776543 355556666666666666
Q ss_pred HHHHHHhhcCCCccchhhh---------hheehhhhhh-ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 326 TILAIFNDLKVDVNLYALV---------AIQNYGERYQ-SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTK 395 (469)
Q Consensus 326 avlaI~~~~~v~~~L~~ll---------Si~n~~~~~~-~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k 395 (469)
.+.+..=..-.+.+..--+ +.+.-..... ..++.. ..+.++.+.+.+.+.+.-+.+|.++=.....+.+
T Consensus 111 gv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v-~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~ 189 (319)
T COG0385 111 GVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGV-PVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVE 189 (319)
T ss_pred chhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555332211122222111 2111111111 111211 1133455666666666777777766665555444
Q ss_pred h
Q psy16350 396 F 396 (469)
Q Consensus 396 ~ 396 (469)
+
T Consensus 190 ~ 190 (319)
T COG0385 190 R 190 (319)
T ss_pred H
Confidence 3
No 31
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=75.21 E-value=1e+02 Score=31.63 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=44.9
Q ss_pred chhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHhhhhccccc
Q psy16350 250 ILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLV-PNLKSGFTFLDSLYFGALISPTD 323 (469)
Q Consensus 250 lLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~-~~~~~~l~~~~aLlfGAiiSaTD 323 (469)
.+..++|..|.+++.++|+|..+..-. -..|......+.-++.|.+.++. +. .-.+..++++-++...++
T Consensus 48 ~l~~mmf~mgl~L~~~df~~~~~~pk~-~~~~~~~qfvi~Plla~~l~~l~~~~---~p~l~~GliLv~~~Pgg~ 118 (328)
T TIGR00832 48 GLILMMYPPLAKVDYSALGDVFKDPKG-LILSLFINWIIGPFLMFLLAWLFLRD---LFEYIAGLILLGLARCIA 118 (328)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHcCchH-HHHHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHhcchHH
Confidence 344689999999999999887765333 35677777777777777776532 21 112445555555554444
No 32
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=55.60 E-value=2.6 Score=41.64 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=47.9
Q ss_pred ccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHHHHHH
Q psy16350 86 NIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIYGL 165 (469)
Q Consensus 86 ~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~gL 165 (469)
.+-+..+.|.+|++++.+.. .||......-+..+.....+.++. ...+.+.. ....++
T Consensus 48 ~igl~~llF~~Gl~~d~~~l----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------------~~~~~~ 105 (273)
T TIGR00932 48 EFGVILLMFLIGLELDLERL----WKLRKAAFGVGVLQVLVPGVLLGL-----LLGHLLGL-------------ALGAAV 105 (273)
T ss_pred HHHHHHHHHHHHhCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCC-------------CHHHHH
Confidence 34466788999999998885 677767666666665554333332 12233321 234689
Q ss_pred HHhhhhhhccCCCCc
Q psy16350 166 IVGALIRYTGSTTPL 180 (469)
Q Consensus 166 ifGaiisatdpvt~l 180 (469)
++|++++.|+|..+.
T Consensus 106 ~lg~~ls~Ts~~v~~ 120 (273)
T TIGR00932 106 VIGIILALSSTAVVV 120 (273)
T ss_pred HHHHHHHHhHHHHHH
Confidence 999999999886554
No 33
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=54.34 E-value=1e+02 Score=32.44 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=82.6
Q ss_pred chhHHhhhhhhcCchHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHhhhhcccc
Q psy16350 250 ILPPIIFHAGYSLKRKYFFKNLGA------ILTFALIGTTISSFVIGTLMYVFLQLV-PNLKSGFTFLDSLYFGALISPT 322 (469)
Q Consensus 250 lLp~IlF~aG~~l~~~~f~~~~~~------Il~la~~Gt~is~~~ig~~~~~~~~~~-~~~~~~l~~~~aLlfGAiiSaT 322 (469)
+...-.|..|+|+|++...-...+ .+.=|+.|++..++ .|...... |....+| ++=.||
T Consensus 60 LMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-----iy~~~n~~~~~~~~GW---------~IP~AT 125 (373)
T TIGR00773 60 LMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-----IYLAFNANDPITREGW---------AIPAAT 125 (373)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCcccCcc---------ccccHH
Confidence 455567889999998755322221 22334555655554 34433221 1112244 355789
Q ss_pred cHHHHHHHHh--hcCCCccchhhh---hheehhhhhh----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 323 DPLTILAIFN--DLKVDVNLYALV---AIQNYGERYQ----SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFL 393 (469)
Q Consensus 323 DPVavlaI~~--~~~v~~~L~~ll---Si~n~~~~~~----~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l 393 (469)
|-+-++.++. ..|+|..++..+ +++-|-.++. .-.++.+.. .. ...+.+...-+.
T Consensus 126 DiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~~i~~~---~L-------------~~a~~~~~~l~~ 189 (373)
T TIGR00773 126 DIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYTNDLSMA---AL-------------LVAAVAIAVLAV 189 (373)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecCCCCCHH---HH-------------HHHHHHHHHHHH
Confidence 9888877765 337899888777 5555544321 112222211 11 111122223334
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhc
Q psy16350 394 TKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHY 442 (469)
Q Consensus 394 ~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y 442 (469)
+++.+.++. ...+......+......|....+|.+..|+++-+.
T Consensus 190 ~~~~~v~~~-----~~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~ 233 (373)
T TIGR00773 190 LNRCGVRRL-----GPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLK 233 (373)
T ss_pred HHHcCCchh-----hHHHHHHHHHHHHHHHcCCcHHHHHHHHeeeeccc
Confidence 444443332 12222222333333688999999999999999874
No 34
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=52.61 E-value=3.2e+02 Score=29.21 Aligned_cols=69 Identities=13% Similarity=0.284 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhcCCCchhHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHHhhcccC
Q psy16350 376 FSLSLFIGAIMGCLTAFL-TKFTRVRDFPLLESALFVLMSYSTFLIAEAS-DLTGVVAVLFCGMCQAHYTYN 445 (469)
Q Consensus 376 ~~gsi~iG~~~G~l~~~l-~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~l-g~SGIlAv~~~Gi~l~~y~~~ 445 (469)
...+.++...+++..+.. .|..+. +++.+-..+...+...+|.....+ |+=-.+..-+.|..+.++.++
T Consensus 343 ~~ia~i~~~~i~~~~~~~~~~i~~i-p~~~L~~~il~~~~vgay~~~~~~~dv~v~l~~g~iG~~~~~~~~~ 413 (419)
T PF01970_consen 343 MLIANILMLLIGLFLARYFAKILKI-PYRILSPIILVLCVVGAYAINGSMFDVWVMLVFGLIGYFMRRFGFP 413 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333334444444433332 332333 344566777888888999888765 666666777788888887655
No 35
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=52.48 E-value=16 Score=39.25 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=43.2
Q ss_pred cccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHHHHHHH
Q psy16350 87 IILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIYGLI 166 (469)
Q Consensus 87 ~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~gLi 166 (469)
.-|--|+|+.|+.-+-..| =.-.+.-+.-|-+|..+... ..++...|+++ +..++|++
T Consensus 66 lALaiILfdgG~~T~lss~----r~a~~palsLATlGVl~Ts~-----Ltg~aA~~ll~-------------l~wle~~L 123 (574)
T COG3263 66 LALAIILFDGGFGTQLSSF----RVAAGPALSLATLGVLITSG-----LTGVAAAYLLN-------------LDWLEGLL 123 (574)
T ss_pred HHHHHHhhcCccCCcHHHH----HHHhhhhHHHHHHHHHHHHH-----HHHHHHHHHhc-------------cHHHHHHH
Confidence 3467789999998776653 12233333333333222222 23344456653 35677999
Q ss_pred HhhhhhhccCCCCc
Q psy16350 167 VGALIRYTGSTTPL 180 (469)
Q Consensus 167 fGaiisatdpvt~l 180 (469)
+|++...||.-+|-
T Consensus 124 iGAiVgSTDAAAVF 137 (574)
T COG3263 124 IGAIVGSTDAAAVF 137 (574)
T ss_pred HHHhhccccHHHHH
Confidence 99999999986654
No 36
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=51.35 E-value=1.4e+02 Score=30.59 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=89.7
Q ss_pred cchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCC-CCHHHHHHhhhhcccccHH
Q psy16350 249 IILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNL--KSG-FTFLDSLYFGALISPTDPL 325 (469)
Q Consensus 249 ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~--~~~-l~~~~aLlfGAiiSaTDPV 325 (469)
.++...+|-.|-+++.|...+-.+.-..+...=+.+.+ +++++.. ++++.. ..+ +-=...+.+=+.++.+.+.
T Consensus 49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~-~lgl~~~---~~fg~~Gi~~g~f~GlS~LAiiaa~~~~Ngg 124 (314)
T PF03812_consen 49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGA-LLGLLVG---KFFGPEGIQSGFFLGLSALAIIAAMTNSNGG 124 (314)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHH-HHHHHHH---HHcCccccccccccchHHHHHHHHHhcCCHH
Confidence 45677799999999999887776665554433344333 3344333 333311 011 1224567777888999999
Q ss_pred HHHHHHhhcCCCccchhhh-hheehhhhhh------ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16350 326 TILAIFNDLKVDVNLYALV-AIQNYGERYQ------SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFTR 398 (469)
Q Consensus 326 avlaI~~~~~v~~~L~~ll-Si~n~~~~~~------~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k~~~ 398 (469)
.-+++.+|++-++|..... .-++|+..+. ....+++ |...+ ..+.-+++|+++|-+=..+.|+.+
T Consensus 125 LY~aL~~~yGd~~D~gA~~i~sl~~GPf~tMl~LG~sG~a~ip---~~~lv-----~~llP~iiG~iLGNLD~~~r~fl~ 196 (314)
T PF03812_consen 125 LYLALMGQYGDEEDVGAFSILSLNDGPFFTMLALGASGLANIP---WMSLV-----AALLPIIIGMILGNLDPDFRKFLA 196 (314)
T ss_pred HHHHHHHHhCCHHHhHHHHHHHhhhhHHHHHHHHhhccccCCC---HHHHH-----HHHHHHHHHHHHhcCCHHHHHHHh
Confidence 9999999999776655443 2334443221 1112222 22122 122344566666766666655543
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHh--------hcCchhHH
Q psy16350 399 VRDFPLLESALFVLMSYSTFLIAE--------ASDLTGVV 430 (469)
Q Consensus 399 ~~~~~~~e~~l~l~~~y~sy~lAE--------~lg~SGIl 430 (469)
.. ...++++++|.+.. .-|++||+
T Consensus 197 ~~--------~~~lIPF~~f~lGa~inl~~i~~aGl~GIl 228 (314)
T PF03812_consen 197 PG--------VPILIPFFGFALGAGINLSNIIKAGLSGIL 228 (314)
T ss_pred cC--------CCeeeehhhhhhcCCCCHHHHHHhCcchHH
Confidence 21 12345555555543 24778865
No 37
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=50.68 E-value=76 Score=32.56 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=46.0
Q ss_pred chhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhh--hhcccccHHHH
Q psy16350 250 ILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFG--ALISPTDPLTI 327 (469)
Q Consensus 250 lLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfG--AiiSaTDPVav 327 (469)
.+|.-.|.-|.+++.++..+...+-+.+++.-+.++. ...|++.+++ +.+-..+++.| |=-+.--|+++
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~----~~~~~i~rll-----g~~~~~g~li~stAGnAIcgpAAV 267 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTG----FFNIFADRLV-----GGTGIAGAAASSTAGNAVATPLAI 267 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHh-----CCChhHHHHHHHHhhHHHHHHHHH
Confidence 7888899999999999999988887777665555443 3455555554 34555566666 33333344444
Q ss_pred HH
Q psy16350 328 LA 329 (469)
Q Consensus 328 la 329 (469)
.+
T Consensus 268 aA 269 (312)
T PRK12460 268 AA 269 (312)
T ss_pred HH
Confidence 33
No 38
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=46.41 E-value=59 Score=36.28 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=49.8
Q ss_pred ccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHH
Q psy16350 246 FFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPL 325 (469)
Q Consensus 246 ff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPV 325 (469)
|-.+++|......|+++|.+.+.++++.++.+....++.-...+...... .++++.+++.+|..+++....
T Consensus 266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~---------~g~~~~~al~~g~~L~~~Gef 336 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARL---------YGLRSSERMQFAGVLSQGGEF 336 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhccccH
Confidence 45678888888899999999998888766555444443333333332222 278999999999888877655
Q ss_pred H
Q psy16350 326 T 326 (469)
Q Consensus 326 a 326 (469)
+
T Consensus 337 ~ 337 (601)
T PRK03659 337 A 337 (601)
T ss_pred H
Confidence 4
No 39
>COG2431 Predicted membrane protein [Function unknown]
Probab=41.61 E-value=3.3e+02 Score=27.66 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=32.5
Q ss_pred ccccccchhHHhhhhhhcCc---hH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhh
Q psy16350 244 EIFFNIILPPIIFHAGYSLK---RK--YFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFG 316 (469)
Q Consensus 244 ~vff~ilLp~IlF~aG~~l~---~~--~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfG 316 (469)
+.-....|-.++|..|+++. .. +..=| +.-+..+ .-++++..+.|.+..++. ++|+..++.++
T Consensus 131 ~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~-~i~ilssliGG~iaa~~l--------~lpl~~~lAma 198 (297)
T COG2431 131 ENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILA-FITLLSSLIGGLIAAFLL--------DLPLTTGLAMA 198 (297)
T ss_pred hhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHH-HHHHHHHHHHHHHHHHHH--------hccHHHHHHHH
Confidence 33445567778888898887 11 11112 2222222 334555655666555543 45555555443
No 40
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=41.37 E-value=79 Score=30.03 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=40.5
Q ss_pred ccccccchhHHhhhhhhcCchH-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhh
Q psy16350 244 EIFFNIILPPIIFHAGYSLKRK-----YFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGA 317 (469)
Q Consensus 244 ~vff~ilLp~IlF~aG~~l~~~-----~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGA 317 (469)
+-...+.|-..+|..|.++..+ ++++..+..+.+. +.+++.+++.+.+...+. ++++.+++..||
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llip-l~tIlGSllgg~l~~~ll--------~~~~~~~lav~s 92 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIP-LATILGSLLGGLLASLLL--------GLSLKESLAVAS 92 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHc
Confidence 3456677888999999998543 3443334555443 344555555555555543 678888887765
No 41
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=39.63 E-value=2.4e+02 Score=30.23 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=39.4
Q ss_pred CcccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy16350 242 DPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTL 292 (469)
Q Consensus 242 ~~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~ 292 (469)
+..-|.+++...++--+=++|||+.+.|.....+-..+.|++...+..++.
T Consensus 91 ~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lv 141 (414)
T PF03390_consen 91 KGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLV 141 (414)
T ss_pred ccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999999999999999999998877776666766665554443
No 42
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=38.15 E-value=90 Score=35.04 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=48.5
Q ss_pred ccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHH
Q psy16350 246 FFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPL 325 (469)
Q Consensus 246 ff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPV 325 (469)
|-.+++|......|+++|...+.++++.++.+....++.-.+.+...... .++++.+++.+|.+++.-...
T Consensus 269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~---------~g~~~~~a~~~gl~L~~~Gef 339 (621)
T PRK03562 269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP---------LGVPRKQRRWFAVLLGQGGEF 339 (621)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCHhHHHHHHHHHhccccH
Confidence 44577787777889999999988887776655444333333333332222 178999999999998876554
Q ss_pred H
Q psy16350 326 T 326 (469)
Q Consensus 326 a 326 (469)
+
T Consensus 340 ~ 340 (621)
T PRK03562 340 A 340 (621)
T ss_pred H
Confidence 3
No 43
>COG2056 Predicted permease [General function prediction only]
Probab=38.12 E-value=1.9e+02 Score=30.58 Aligned_cols=17 Identities=53% Similarity=0.778 Sum_probs=13.3
Q ss_pred HHHHhhcCCCccchhhh
Q psy16350 328 LAIFNDLKVDVNLYALV 344 (469)
Q Consensus 328 laI~~~~~v~~~L~~ll 344 (469)
+++|+++++|+|+-..+
T Consensus 134 L~lfn~LkiDRR~vAc~ 150 (444)
T COG2056 134 LSLFNKLKIDRRLVACV 150 (444)
T ss_pred HHHHHHhhhhHHHHHHH
Confidence 46678999999877665
No 44
>KOG1650|consensus
Probab=37.53 E-value=11 Score=43.50 Aligned_cols=196 Identities=14% Similarity=0.145 Sum_probs=107.5
Q ss_pred cccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCC-CCHHHHHHhhhhcccc
Q psy16350 245 IFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFL-QLVPNLKSG-FTFLDSLYFGALISPT 322 (469)
Q Consensus 245 vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~-~~~~~~~~~-l~~~~aLlfGAiiSaT 322 (469)
.+-.+-+-...|..|.++|.+..+|+.+....+++.+.++.+..-....+... ...+..... ....+-...+...|.|
T Consensus 86 ~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~t 165 (769)
T KOG1650|consen 86 LLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSIT 165 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 34455566789999999999999999999888888888877653222222221 011111111 1112445566777777
Q ss_pred cHHHHHHHHhhcCC-Cccchhhh---hheehhhhh-------hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 323 DPLTILAIFNDLKV-DVNLYALV---AIQNYGERY-------QSGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTA 391 (469)
Q Consensus 323 DPVavlaI~~~~~v-~~~L~~ll---Si~n~~~~~-------~~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~ 391 (469)
.=-.+..++.|+|. ..++-.+. +.++|..+. ...... .. ........+...+...+..=.++=.+..
T Consensus 166 sfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~v~~p~~~ 243 (769)
T KOG1650|consen 166 SFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSEL-KL-SPLRSVWDLVLVIGFVLFLFFVVRPLMK 243 (769)
T ss_pred hhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccC-CC-cchHHHHHHHHHHHHHHheeeehhhhHH
Confidence 77677788888885 33444343 666665432 111111 00 0011122222111111111112223444
Q ss_pred HHHHhhh-cCCCchhHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHhhc
Q psy16350 392 FLTKFTR-VRDFPLLESALFVLMSYSTFLIAEASD-LTGVVAVLFCGMCQAHY 442 (469)
Q Consensus 392 ~l~k~~~-~~~~~~~e~~l~l~~~y~sy~lAE~lg-~SGIlAv~~~Gi~l~~y 442 (469)
|+.|.+- .+..+.......++..+.+....+.++ ...+.+.+..|++.-|-
T Consensus 244 wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~ 296 (769)
T KOG1650|consen 244 WIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHG 296 (769)
T ss_pred HHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCC
Confidence 5555431 112233445666777788888888776 77788999999998763
No 45
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=32.00 E-value=1.2e+02 Score=33.28 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=45.6
Q ss_pred cccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHHH
Q psy16350 247 FNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPLT 326 (469)
Q Consensus 247 f~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPVa 326 (469)
-..++|.-....|+++|...+.+++..++.+.....+.-.+.+.. ..++ .+.++.+++..|..+++.....
T Consensus 278 ~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~----~~~~-----~g~~~~~a~~~gl~l~~~Gef~ 348 (558)
T PRK10669 278 RDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF----LVRL-----FGHSRRTALTIAASLAQIGEFA 348 (558)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----hCCChhhHHHHHHHHhcccchH
Confidence 345778778888999999998887655443322222222221111 1111 2778999999999998766654
Q ss_pred HH
Q psy16350 327 IL 328 (469)
Q Consensus 327 vl 328 (469)
.+
T Consensus 349 li 350 (558)
T PRK10669 349 FI 350 (558)
T ss_pred HH
Confidence 43
No 46
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=31.61 E-value=1.3e+02 Score=27.86 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=21.5
Q ss_pred cccccHHHHHHHHhhcCCCccchhhh
Q psy16350 319 ISPTDPLTILAIFNDLKVDVNLYALV 344 (469)
Q Consensus 319 iSaTDPVavlaI~~~~~v~~~L~~ll 344 (469)
...|||.-....+++.|+|+++..++
T Consensus 111 ~~TT~~~~l~~~l~~l~~P~~~~~~~ 136 (198)
T TIGR02454 111 ALTTPFPELLSALRRLGVPPLLVEIL 136 (198)
T ss_pred HHcCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44689999999999999998876555
No 47
>COG2035 Predicted membrane protein [Function unknown]
Probab=31.38 E-value=1.2e+02 Score=30.65 Aligned_cols=50 Identities=24% Similarity=0.115 Sum_probs=32.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHHHHHHHHhhhhh
Q psy16350 110 IRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIYGLIVGALIR 172 (469)
Q Consensus 110 f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~gLifGaiis 172 (469)
+++++.++.++. ....|++...=+..|+++|+| |.-.+++.|++.|++..
T Consensus 187 ~~~l~~l~~f~~------G~~~Gll~fskvi~y~L~~h~-------~~t~~fi~Gl~lgSl~~ 236 (276)
T COG2035 187 FFILGTLLPFAI------GAGAGLLTFSKVISYLLRNHR-------EITYAFIIGLILGSLRA 236 (276)
T ss_pred hhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHH
Confidence 345555555543 334455555555678888877 55678899999998764
No 48
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=30.32 E-value=5.8e+02 Score=25.70 Aligned_cols=68 Identities=28% Similarity=0.453 Sum_probs=42.4
Q ss_pred ccccccccCcccccccccchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHH
Q psy16350 82 EIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAV 161 (469)
Q Consensus 82 ~~ff~~lLPpIif~agysl~~~~ff~~~f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~ 161 (469)
|.+..+..=||..+.||+.-+.- +||. +.++.+++ ..+++|+.+++ .-.+.-.++
T Consensus 4 ~Fi~~yyi~pi~~~~GYn~Vnt~-------------~Yai--------iL~~~v~~--v~~ll~~l~i~--id~~f~~al 58 (273)
T PF01889_consen 4 EFIYKYYIDPIYYGPGYNPVNTL-------------TYAI--------ILGVAVIG--VYKLLKRLRIK--IDERFVLAL 58 (273)
T ss_pred HHHHHHhccccccCCCCcHHHHH-------------HHHH--------HHHHHHHH--HHHHHHHcCCC--Cchhhhhhh
Confidence 45566777799999999876443 3442 22222233 34677776633 333445667
Q ss_pred HHHHHHhhhhhhc
Q psy16350 162 IYGLIVGALIRYT 174 (469)
Q Consensus 162 ~~gLifGaiisat 174 (469)
.==+++|+.+|+-
T Consensus 59 ~P~m~~G~~lRvl 71 (273)
T PF01889_consen 59 IPFMLFGGALRVL 71 (273)
T ss_pred hhHHHHHHHHHhh
Confidence 7778999999876
No 49
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=28.30 E-value=5.6e+02 Score=25.61 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=36.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHHHHHHHHhhhhhhccCC
Q psy16350 110 IRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIYGLIVGALIRYTGST 177 (469)
Q Consensus 110 f~n~~~i~~~a~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~gLifGaiisatdpv 177 (469)
..++++|..+||+.+.-.. .+.| +..+.++| |+ +-+-++++-|+.+|++=|+|.-|
T Consensus 123 ~~~~~~i~~haFIa~fci~----~~aY--lm~~~L~h---PF---PlPlla~iwGItvGAiGSstGDv 178 (283)
T TIGR01113 123 TSHLGPIAGHGFIVTFCMV----GVAY--LMTLPLKH---PF---PLPLLAMIWGITIGAIGSSTGDV 178 (283)
T ss_pred HhhchhHHHHHHHHHHHHH----HHHH--HHHHhccC---CC---chhHHHHHHHHhhcccccccCCc
Confidence 5788899999987754321 1111 22344443 43 34678999999999999999543
No 50
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=27.49 E-value=2.1e+02 Score=33.35 Aligned_cols=71 Identities=13% Similarity=0.235 Sum_probs=40.4
Q ss_pred cccchhHHhhhhhhcCchHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccH
Q psy16350 247 FNIILPPIIFHAGYSLKRKYFFKNL--GAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDP 324 (469)
Q Consensus 247 f~ilLp~IlF~aG~~l~~~~f~~~~--~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDP 324 (469)
..+++|.-....|+++|.+.+.... ..+..+.+++.+.=.+ |.. ...+ -.++++.+++.+|.++++..=
T Consensus 324 ~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~--g~~--l~a~-----~~g~~~~eal~lG~lm~~kG~ 394 (832)
T PLN03159 324 SGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIM--GTI--IIAF-----FYTMPFREGITLGFLMNTKGL 394 (832)
T ss_pred HHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHH--HHH--HHHH-----HhCCCHHHHHHHHHHHhcccH
Confidence 4578888888899999998775321 1111111111111111 111 1111 127899999999999988764
Q ss_pred HH
Q psy16350 325 LT 326 (469)
Q Consensus 325 Va 326 (469)
+.
T Consensus 395 ~~ 396 (832)
T PLN03159 395 VE 396 (832)
T ss_pred HH
Confidence 43
No 51
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=27.08 E-value=7e+02 Score=25.58 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCCccchhhh--hheehhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16350 325 LTILAIFNDLKVDVNLYALV--AIQNYGERYQSGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFT 397 (469)
Q Consensus 325 VavlaI~~~~~v~~~L~~ll--Si~n~~~~~~~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k~~ 397 (469)
...+.+.-.++.|.-..+-+ +++-.+.+.. .++..+|.+.+...+...+.|.++|.+++++..+++|+.
T Consensus 77 ~iw~~i~t~~glPvStThalvGal~G~~l~~~----g~~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~~~~~ 147 (326)
T PF01384_consen 77 AIWLLIATWLGLPVSTTHALVGALIGAGLASG----GFSAVNWSKGLLKIVLSWVISPLIAFILAYILYRLIRRI 147 (326)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHh----hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555678887765554 5554444331 122333433566777777888888888888888777654
No 52
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=26.93 E-value=60 Score=30.40 Aligned_cols=46 Identities=24% Similarity=0.438 Sum_probs=35.0
Q ss_pred CCCceEEEecccccccCCCceEEEEecceeeccCccccccccccCcccc
Q psy16350 36 LPPDTLWLKFPVKGASNINKTYGYRFRGEIVDLENNEIDLKATFDPEIF 84 (469)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~f~p~~f 84 (469)
.+|+.+.+.-. . ...+..|.|.+...|..-++|-....++|||++|
T Consensus 114 r~PdvfvfR~~--~-~~~~~~~~~~LA~DvyPn~PNVr~~~V~F~~~~F 159 (178)
T PF12249_consen 114 RAPDVFVFRGS--A-EDPDDGYTLRLAEDVYPNQPNVRRYTVTFDPEVF 159 (178)
T ss_pred CCCCEEEEcCC--C-CCCCCCeEEeeecccCCCCCCceeeeeeeCHHHc
Confidence 37888777632 1 2346789999998888777888888899999987
No 53
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=24.08 E-value=3.4e+02 Score=25.04 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q psy16350 376 FSLSLFIGAIMGCLTAFLTKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMC 438 (469)
Q Consensus 376 ~~gsi~iG~~~G~l~~~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~ 438 (469)
++.+.++|.+.+++..++.|+.. .....+.+-.+..+..+............-++++++++
T Consensus 128 ~~~a~i~g~~~~~~~~~~~r~~~--~~~~~~~~aa~~~~~~a~~~~~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 128 MIVAFILGLLVGLLRQLLSRRRL--NSFIQEFIAAFLASLLAALLARLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHh
Confidence 34455566666666555544321 22233455556666666666654444455566666654
No 54
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=23.94 E-value=2.7e+02 Score=28.87 Aligned_cols=139 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred cccccccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccc
Q psy16350 243 PEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPT 322 (469)
Q Consensus 243 ~~vff~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaT 322 (469)
.+.+..++|--|=|.+|.++....+..-..+ ....+.-.+++.+..|.+.+.+++++..=.-..+--+||+-..|
T Consensus 26 ~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~-----~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavT 100 (327)
T PF05982_consen 26 YKFLSIYLLLAIGLKGGVELAHSGLTALLLP-----LLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVT 100 (327)
T ss_pred HHHHHHHHHHHHhcccHHHHHcCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHH
Q ss_pred cHHHHHHHHhhcCCCccchhhh------------hheehhhhhhccCCCcchhH-------------HHHHHHHHH----
Q psy16350 323 DPLTILAIFNDLKVDVNLYALV------------AIQNYGERYQSGTGGFEANA-------------FLLAVGDFI---- 373 (469)
Q Consensus 323 DPVavlaI~~~~~v~~~L~~ll------------Si~n~~~~~~~~~~~~~~~~-------------~~~~i~~fl---- 373 (469)
=.+++ +.+++.+++-+=+... +++.....-.......+... +.+.+-+.+
T Consensus 101 F~~a~-~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~~~s 179 (327)
T PF05982_consen 101 FAAAL-AFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASSTRVGAGSGHEGISWGELLHESLTNKS 179 (327)
T ss_pred HHHHH-HHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCccccccccccccccHHHHHHHHHcCch
Q ss_pred -HHHHHHHHHHHHHH
Q psy16350 374 -GIFSLSLFIGAIMG 387 (469)
Q Consensus 374 -~~~~gsi~iG~~~G 387 (469)
...+||++||++.|
T Consensus 180 v~LLlGgliIG~~~g 194 (327)
T PF05982_consen 180 VVLLLGGLIIGFLAG 194 (327)
T ss_pred HHHHHHHHHHhheeC
No 55
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.93 E-value=2.9e+02 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=22.4
Q ss_pred HHHhhhhc-cCccccccchhHHHHHHHHhhhhhhcc
Q psy16350 141 IQLLHWFR-IPLRFLHETGLAVIYGLIVGALIRYTG 175 (469)
Q Consensus 141 ~~l~k~~r-ip~~~lhEt~l~~~~gLifGaiisatd 175 (469)
....|+.. +|-+|+| -+++..|.+.|++.....
T Consensus 22 Vq~IkkT~~v~~K~iP--lIs~viGilLG~~~~~~~ 55 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIP--LISVVIGILLGAAAYPLT 55 (93)
T ss_pred HHHHHHhccCCcchhh--HHHHHHHHHHHHHhhhcC
Confidence 34445443 4567886 678888999998876553
No 56
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=23.72 E-value=1.8e+02 Score=28.99 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCccccccchhHHHHHHHHhhhhhhc
Q psy16350 128 IVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIYGLIVGALIRYT 174 (469)
Q Consensus 128 ~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~gLifGaiisat 174 (469)
..++|++...=+..|++||++ +...+.+.|++.|++..-.
T Consensus 197 G~~~Gi~~~skll~~ll~~~~-------~~t~~~i~GlviGSl~~i~ 236 (257)
T PF04018_consen 197 GVVIGILLFSKLLSYLLKRYR-------SQTYAFIIGLVIGSLRAIW 236 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHhc
Confidence 555666666667788888865 4456788899999887644
No 57
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.46 E-value=2.8e+02 Score=24.15 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH
Q psy16350 370 GDFIGIFSLSLFIGAIMGCLTAFLTKFTRVRDFPLLESALFVLMSYST 417 (469)
Q Consensus 370 ~~fl~~~~gsi~iG~~~G~l~~~l~k~~~~~~~~~~e~~l~l~~~y~s 417 (469)
......++.|+++|+.+||++=+.. +..-+-.++.+++.+.+
T Consensus 46 ~klssefIsGilVGa~iG~llD~~a------gTsPwglIv~lllGf~A 87 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFA------GTSPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHH
No 58
>PRK10457 hypothetical protein; Provisional
Probab=22.38 E-value=4.3e+02 Score=21.55 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHhhcC
Q psy16350 376 FSLSLFIGAIMGCLTAFLTKFTRVRDFPLLESALFVLMSYSTFLIAEASD 425 (469)
Q Consensus 376 ~~gsi~iG~~~G~l~~~l~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg 425 (469)
++..+++|.+.|++..++++-.+ +.--.....+-+.-++....++..+|
T Consensus 3 ii~~iiiG~iaG~lA~~i~pg~~-~~G~~~tiilGiiGA~iGg~l~~~~g 51 (82)
T PRK10457 3 ILSWIIFGLIAGILAKWIMPGKD-GGGFFMTIILGIVGAVVGGWISTFFG 51 (82)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC-CcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35668899999999988876321 11111233444445555555554443
No 59
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=22.36 E-value=5.7e+02 Score=26.14 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccccchhHHHHHHHHhhhhhhc
Q psy16350 121 MLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFLHETGLAVIYGLIVGALIRYT 174 (469)
Q Consensus 121 ~lgT~~~~~~i~ll~~~~l~~~l~k~~rip~~~lhEt~l~~~~gLifGaiisat 174 (469)
|+.+...++..+++.|. |+++..+ |-+| +-++.|+++|.+.|.-
T Consensus 104 Fl~~l~~mvlFsl~Ly~----~lf~~~~---r~l~---~~lLiGlv~G~lFrSi 147 (316)
T COG4605 104 FLLELVVMVLFSLLLYY----WLFSGGG---RDLH---LLLLIGLVLGTLFRSI 147 (316)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhcCC---Ccee---HHHHHHHHHHHHHHHH
Confidence 56666666666665554 7777653 2344 5688999999998765
No 60
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.73 E-value=82 Score=27.84 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16350 377 SLSLFIGAIMGCLTAFLTK 395 (469)
Q Consensus 377 ~gsi~iG~~~G~l~~~l~k 395 (469)
+.++++|+++|+++.++++
T Consensus 3 ~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4567788888887777654
No 61
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=21.14 E-value=1e+03 Score=25.39 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhcC-----chhHHHHHHHHHHHhhcc
Q psy16350 408 ALFVLMSYSTFLIAEASD-----LTGVVAVLFCGMCQAHYT 443 (469)
Q Consensus 408 ~l~l~~~y~sy~lAE~lg-----~SGIlAv~~~Gi~l~~y~ 443 (469)
.+...+.-..|.+.++++ +--.+-+++.|++.+|-.
T Consensus 225 ~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~ 265 (404)
T COG0786 225 AIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL 265 (404)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH
Confidence 344455566677777654 445778999999988754
No 62
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=20.04 E-value=9.3e+02 Score=24.81 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=55.0
Q ss_pred chhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHHHHHH
Q psy16350 250 ILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPLTILA 329 (469)
Q Consensus 250 lLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPVavla 329 (469)
++...+|-.|-+++.|.-.+-.+.-..+...=+.+.+ +++++ +.++++. .++-=...|.+=|.++-+....-.+
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~-~~g~~---~~~~~g~--~g~~Gls~laiiaa~~~~Ng~ly~a 123 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAI-VIGLL---VGKFFGA--EGIFGLSGLAIVAAMSNSNGGLYAA 123 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHH-HHHHH---HHHHcCc--ccccchHHHHHHHHHhcCcHHHHHH
Confidence 4556688999999988765554432222222222222 22332 2233331 2333345666667778889999999
Q ss_pred HHhhcCCCccchhhh-hheehhh
Q psy16350 330 IFNDLKVDVNLYALV-AIQNYGE 351 (469)
Q Consensus 330 I~~~~~v~~~L~~ll-Si~n~~~ 351 (469)
+.+|++-++|..... .-+||+.
T Consensus 124 l~~~yG~~~d~gA~~~~sl~~GP 146 (312)
T PRK12460 124 LMGEFGDERDVGAISILSLNDGP 146 (312)
T ss_pred HHHHcCCHhhhhHHhhhhhccCc
Confidence 999999776655443 3334544
Done!