Query psy16350
Match_columns 469
No_of_seqs 311 out of 1565
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 19:07:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4e_A Sodium/hydrogen exchang 99.2 1.7E-12 5.8E-17 81.8 0.3 27 78-104 1-27 (27)
2 2l0e_A Sodium/hydrogen exchang 98.7 8.1E-10 2.8E-14 73.5 -0.7 31 308-338 2-32 (33)
3 2k3c_A TMIX peptide; membrane 98.1 1.4E-08 4.7E-13 67.7 -7.4 32 413-444 2-33 (33)
4 1y4e_A Sodium/hydrogen exchang 98.0 4.3E-07 1.5E-11 57.2 -0.8 25 241-265 2-26 (27)
5 2htg_A NHE-1, NHE1 isoform of 97.4 3.3E-06 1.1E-10 53.6 -3.9 25 197-224 1-25 (28)
6 2l0e_A Sodium/hydrogen exchang 96.9 2.7E-05 9.4E-10 51.6 -3.8 28 163-200 5-32 (33)
7 1zcd_A Na(+)/H(+) antiporter 1 96.0 0.021 7E-07 58.6 9.6 162 249-444 66-242 (388)
8 3zux_A Transporter, ASBTNM; tr 66.6 58 0.002 32.0 12.4 89 248-342 46-134 (332)
9 2q67_A Potassium channel prote 16.3 2.4E+02 0.0082 22.8 5.6 29 284-319 32-60 (114)
10 3vou_A ION transport 2 domain 14.4 2.3E+02 0.0077 24.0 5.2 15 306-320 50-64 (148)
No 1
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=99.20 E-value=1.7e-12 Score=81.79 Aligned_cols=27 Identities=41% Similarity=0.785 Sum_probs=25.2
Q ss_pred ccCcccccccccCcccccccccchhhh
Q psy16350 78 TFDPEIFFNIILPPIIFHAGYSLKRAM 104 (469)
Q Consensus 78 ~f~p~~ff~~lLPpIif~agysl~~~~ 104 (469)
.|||++||++|||||||+|||+||||.
T Consensus 1 ~~~~~~FF~~LLPPII~~aGy~l~~r~ 27 (27)
T 1y4e_A 1 FLQSDVFFLFLLPPIILDAGYFLPLRX 27 (27)
T ss_dssp CCCSCSSHHHHSCCSSHHHHTTGGGGC
T ss_pred CCccceeeeeccCccEeeccccccCCC
Confidence 389999999999999999999999984
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.73 E-value=8.1e-10 Score=73.54 Aligned_cols=31 Identities=35% Similarity=0.717 Sum_probs=28.9
Q ss_pred CHHHHHHhhhhcccccHHHHHHHHhhcCCCc
Q psy16350 308 TFLDSLYFGALISPTDPLTILAIFNDLKVDV 338 (469)
Q Consensus 308 ~~~~aLlfGAiiSaTDPVavlaI~~~~~v~~ 338 (469)
+|.+|++|||++||||||++++++|++++|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 5677999999999999999999999999986
No 3
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=98.08 E-value=1.4e-08 Score=67.73 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHhhccc
Q psy16350 413 MSYSTFLIAEASDLTGVVAVLFCGMCQAHYTY 444 (469)
Q Consensus 413 ~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~ 444 (469)
++|.+|.+||.+|+|||+|+++||++++||.+
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~~ 33 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKKX 33 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC-
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhccC
Confidence 47889999999999999999999999999863
No 4
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=98.03 E-value=4.3e-07 Score=57.19 Aligned_cols=25 Identities=44% Similarity=0.951 Sum_probs=23.6
Q ss_pred cCcccccccchhHHhhhhhhcCchH
Q psy16350 241 FDPEIFFNIILPPIIFHAGYSLKRK 265 (469)
Q Consensus 241 f~~~vff~ilLp~IlF~aG~~l~~~ 265 (469)
|+|++||+++||||+|++||+|++|
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred CccceeeeeccCccEeeccccccCC
Confidence 6899999999999999999999876
No 5
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=97.39 E-value=3.3e-06 Score=53.63 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=22.4
Q ss_pred CCCCceeEEEccCCccccCCceEEEEEe
Q psy16350 197 SLPPDTLWLKFPVKGASNINKTYGYRFR 224 (469)
Q Consensus 197 ~v~~~l~~l~fge~~~s~~nda~~~~l~ 224 (469)
|+|+.+|.++||| |++|||+++++.
T Consensus 1 ~V~~~L~~lvfGE---SllNDavaiVlf 25 (28)
T 2htg_A 1 HINELLHILVFGE---SLLNDAVTVVLY 25 (28)
T ss_dssp CCSSTTHHHHTTT---TTTTTTTTTTTT
T ss_pred CCCceEEEEEEee---eeecccEEEEEE
Confidence 5889999999999 999999987754
No 6
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=96.86 E-value=2.7e-05 Score=51.64 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=25.4
Q ss_pred HHHHHhhhhhhccCCCCcccccccCCCCcccccCCCCC
Q psy16350 163 YGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPP 200 (469)
Q Consensus 163 ~gLifGaiisatdpvt~l~~~~~~~~~~a~f~~l~v~~ 200 (469)
+|++||+++++||||+++ ++|+++++|+
T Consensus 5 ~~llfGAiis~TDpVavl----------aif~~~~vp~ 32 (33)
T 2l0e_A 5 DNLLFGSIISAVDPVAVL----------AVFEEIHKKK 32 (33)
T ss_dssp CCCTTHHHHTTCCHHHHH----------HHHHHHTTTC
T ss_pred HHHHHHHHccCCChHHHH----------HHHHHcCCCC
Confidence 378999999999999999 9999988875
No 7
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=96.05 E-value=0.021 Score=58.59 Aligned_cols=162 Identities=13% Similarity=0.045 Sum_probs=99.3
Q ss_pred cchhHHhhhhhhcCchHHH----Hhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccc
Q psy16350 249 IILPPIIFHAGYSLKRKYF----FKNLG--AILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPT 322 (469)
Q Consensus 249 ilLp~IlF~aG~~l~~~~f----~~~~~--~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaT 322 (469)
.++....|..|+|+|++.. ++..+ .....|..|+++.+.+ |... +.+..++.--+++.++|
T Consensus 66 glm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~--------~~~~~~~~~gw~ip~AT 132 (388)
T 1zcd_A 66 ALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF--------NYADPITREGWAIPAAT 132 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG--------CCSSTTHHHHTSSSSCC
T ss_pred HhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH--------hcCChhhhhhhHHHHHH
Confidence 4677789999999998876 33333 4577788888887764 3221 34455677889999999
Q ss_pred cHHHHHHHHhhcC--CCccchhhh---hheehhhhhh----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16350 323 DPLTILAIFNDLK--VDVNLYALV---AIQNYGERYQ----SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFL 393 (469)
Q Consensus 323 DPVavlaI~~~~~--v~~~L~~ll---Si~n~~~~~~----~~~~~~~~~~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l 393 (469)
|-+-++.++..++ +|..++..+ +++.|..+.. ...++.+. ..... .++ .....+.
T Consensus 133 dIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt~~~~~---~~l~~----------~~~---~~~~~~~ 196 (388)
T 1zcd_A 133 DIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLSM---ASLGV----------AAV---AIAVLAV 196 (388)
T ss_dssp CHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSCCCCCH---HHHHH----------HHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCccH---HHHHH----------HHH---HHHHHHH
Confidence 9999999998764 688886666 6666654321 11122221 11110 011 1111122
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhhccc
Q psy16350 394 TKFTRVRDFPLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTY 444 (469)
Q Consensus 394 ~k~~~~~~~~~~e~~l~l~~~y~sy~lAE~lg~SGIlAv~~~Gi~l~~y~~ 444 (469)
+++.+.++. .... .+...++..+|..|...+++.+.+|+++.+..+
T Consensus 197 l~r~~v~~~---~~y~--~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~ 242 (388)
T 1zcd_A 197 LNLCGARRT---GVYI--LVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEK 242 (388)
T ss_dssp HHHTTCCCT---HHHH--HHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGG
T ss_pred HHHhcchhH---HHHH--HHHHHHHHHHHHhCccHHHHHHHHHHhccCCCc
Confidence 333222221 1222 223355677799999999999999999987543
No 8
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=66.57 E-value=58 Score=31.97 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=50.2
Q ss_pred ccchhHHhhhhhhcCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhcccccHHHH
Q psy16350 248 NIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALISPTDPLTI 327 (469)
Q Consensus 248 ~ilLp~IlF~aG~~l~~~~f~~~~~~Il~la~~Gt~is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAiiSaTDPVav 327 (469)
...++.++|..|.+++.+++++..+..-. -..+..+..++.-++++.+.++.+ .+-....++++-++...++-+.+
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~-~~~~l~~~~vi~Pll~~~l~~~~~---l~~~~~~Glil~~~~P~~~~s~v 121 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKV-VIIGVIAQFAIMPATAWCLSKLLN---LPAEIAVGVILVGCCPGGTASNV 121 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHH-HHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHSCCCTHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHhcCCchhHHHH
Confidence 45788999999999999999855443222 124555666666666666655432 11124444554444444444443
Q ss_pred HHHHhhcCCCccchh
Q psy16350 328 LAIFNDLKVDVNLYA 342 (469)
Q Consensus 328 laI~~~~~v~~~L~~ 342 (469)
.+ +..|-|..+..
T Consensus 122 ~t--~~a~Gd~~la~ 134 (332)
T 3zux_A 122 MT--YLARGNVALSV 134 (332)
T ss_dssp HH--HHTTCCHHHHH
T ss_pred HH--HHhCCCHHHHH
Confidence 22 33444544443
No 9
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=16.28 E-value=2.4e+02 Score=22.82 Aligned_cols=29 Identities=31% Similarity=0.695 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhc
Q psy16350 284 ISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYFGALI 319 (469)
Q Consensus 284 is~~~ig~~~~~~~~~~~~~~~~l~~~~aLlfGAii 319 (469)
+..++.|...|... .++++.+|+.+..+.
T Consensus 32 ~~~~~~g~~~~~~~-------e~~~~~~a~y~~~~T 60 (114)
T 2q67_A 32 ILTLISGTIFYSTV-------EGLRPIDALYFSVVT 60 (114)
T ss_dssp HHHHHHHHHHHHHH-------SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------cCCCHHHHHHHHHHH
Confidence 33445566555543 278899998887643
No 10
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=14.40 E-value=2.3e+02 Score=23.95 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=11.6
Q ss_pred CCCHHHHHHhhhhcc
Q psy16350 306 GFTFLDSLYFGALIS 320 (469)
Q Consensus 306 ~l~~~~aLlfGAiiS 320 (469)
++++.+|+.+..+..
T Consensus 50 ~~~~~~a~y~~~~t~ 64 (148)
T 3vou_A 50 GLRPLDALYFSVVTL 64 (148)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 789999988876543
Done!