Query psy16350
Match_columns 469
No_of_seqs 311 out of 1565
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 19:07:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16350.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16350hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 16.8 96 0.007 17.8 4.1 20 372-391 6-25 (32)
2 d2onkc1 f.58.1.1 (C:1-252) Mol 10.2 2.1E+02 0.015 23.6 6.3 34 364-397 46-79 (252)
3 d3d31c1 f.58.1.1 (C:13-260) Su 7.6 2.1E+02 0.016 23.5 5.1 34 364-397 44-77 (248)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 6.4 1.3E+02 0.0095 18.1 1.9 16 428-443 20-35 (37)
5 d2yvxa3 f.57.1.1 (A:276-448) M 4.6 6.1E+02 0.044 20.1 6.0 13 329-341 135-147 (173)
6 d2r6gf2 f.58.1.1 (F:261-504) M 3.6 5.5E+02 0.04 20.7 5.1 33 365-397 17-49 (244)
7 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.5 9.4E+02 0.068 19.5 6.8 34 365-398 75-108 (290)
8 d1v54d_ f.23.1.1 (D:) Mitochon 3.3 4.7E+02 0.035 20.4 3.9 21 376-396 78-98 (144)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 3.2 3.8E+02 0.027 21.1 3.4 18 378-395 168-185 (189)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 3.1 7.4E+02 0.054 17.2 4.8 26 371-396 71-96 (103)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.80 E-value=96 Score=17.77 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16350 372 FIGIFSLSLFIGAIMGCLTA 391 (469)
Q Consensus 372 fl~~~~gsi~iG~~~G~l~~ 391 (469)
.++..+.....|+.+|.+.+
T Consensus 6 vfyivfialffgiavgiifa 25 (32)
T d2e74e1 6 VFYIVFIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHhhheee
Confidence 34555555666666666543
No 2
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.23 E-value=2.1e+02 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16350 364 AFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFT 397 (469)
Q Consensus 364 ~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k~~ 397 (469)
..++.+..-+...+.+.+++.++|...++.+.+.
T Consensus 46 ~~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~ 79 (252)
T d2onkc1 46 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARK 79 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666777777788888888888888776543
No 3
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=7.64 E-value=2.1e+02 Score=23.48 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16350 364 AFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFT 397 (469)
Q Consensus 364 ~~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k~~ 397 (469)
+..+.+..-+...+.+.+++.++|...++.+.+.
T Consensus 44 ~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~ 77 (248)
T d3d31c1 44 SVISSIFLSLYAGFLATLLALLLGAPTGYILARF 77 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666667777778888888888888877543
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.42 E-value=1.3e+02 Score=18.11 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHhhcc
Q psy16350 428 GVVAVLFCGMCQAHYT 443 (469)
Q Consensus 428 GIlAv~~~Gi~l~~y~ 443 (469)
|++-+++.|+.+++|-
T Consensus 20 GlLlifvl~vLFssYf 35 (37)
T d2axtl1 20 GLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6777778888777763
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.59 E-value=6.1e+02 Score=20.09 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=9.5
Q ss_pred HHHhhcCCCccch
Q psy16350 329 AIFNDLKVDVNLY 341 (469)
Q Consensus 329 aI~~~~~v~~~L~ 341 (469)
-++|++|.||...
T Consensus 135 lll~klg~DPA~a 147 (173)
T d2yvxa3 135 FLLRRLGVDPALV 147 (173)
T ss_dssp HHHHHTSCCGGGS
T ss_pred HHHHHhCCChhhh
Confidence 4568889887765
No 6
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.56 E-value=5.5e+02 Score=20.74 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16350 365 FLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFT 397 (469)
Q Consensus 365 ~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k~~ 397 (469)
++..+..-+...+.++.+...+|+..++++.+.
T Consensus 17 ~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~ 49 (244)
T d2r6gf2 17 FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWE 49 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455565556666778888888888888887543
No 7
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.46 E-value=9.4e+02 Score=19.55 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16350 365 FLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFTR 398 (469)
Q Consensus 365 ~~~~i~~fl~~~~gsi~iG~~~G~l~~~l~k~~~ 398 (469)
.+..+.+-+...+++.++...+|...++.+.+.+
T Consensus 75 ~~~~~~nSl~~a~~~~~~~~~ig~~~a~~l~r~~ 108 (290)
T d2r6gg1 75 VLLWLWNSVKVAGISAIGIVALSTTCAYAFARMR 108 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhHHhhhhhhhhhhhHHHHHHHHHHHhh
Confidence 4555666666777777778888888888765443
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.27 E-value=4.7e+02 Score=20.41 Aligned_cols=21 Identities=10% Similarity=-0.116 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy16350 376 FSLSLFIGAIMGCLTAFLTKF 396 (469)
Q Consensus 376 ~~gsi~iG~~~G~l~~~l~k~ 396 (469)
++|++++|+.+|.+...+.|.
T Consensus 78 v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 78 VVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777776666664
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=3.22 E-value=3.8e+02 Score=21.11 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16350 378 LSLFIGAIMGCLTAFLTK 395 (469)
Q Consensus 378 gsi~iG~~~G~l~~~l~k 395 (469)
+|.+.|++.|++..+..|
T Consensus 168 ~G~l~G~~~g~~~~~~~k 185 (189)
T d2nr9a1 168 SGLIVGLIWGFIDSKLRK 185 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccc
Confidence 556666666666555544
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.13 E-value=7.4e+02 Score=17.18 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16350 371 DFIGIFSLSLFIGAIMGCLTAFLTKF 396 (469)
Q Consensus 371 ~fl~~~~gsi~iG~~~G~l~~~l~k~ 396 (469)
..+..+.|-..++..+|.+...+.+.
T Consensus 71 ~~~~~~~Gi~~~~~~~~~i~~~~~~~ 96 (103)
T d1r3jc_ 71 AVVVMVAGITSFGLVTAALATWFVGR 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556566777777777766553
Done!