RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16350
(469 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 149 bits (378), Expect = 2e-39
Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 17/226 (7%)
Query: 240 TFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQL 299
T D FF +LPPI+ AGY + ++ FF+NLG+IL FA++GT I++FVIG +Y + L
Sbjct: 62 TLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLY-GICL 120
Query: 300 VPNLKSG-FTFLDSLYFGALISPTDPLTILAIFNDLKVDVNLYAL----------VAIQN 348
+ S LD+L FG+LIS DP+ +LA+F + V+ LY + V +
Sbjct: 121 IGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVL 180
Query: 349 YGERYQSGTGGFEANAFLLAVGDFIGIFSL---SLFIGAIMGCLTAFLTKFTRVRDFPLL 405
Y + E + F + L +G + G L AF+T+FT +
Sbjct: 181 YNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIR--QI 238
Query: 406 ESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYNNLSSDS 451
E L+SY ++L AE L+G++A++FCG+ Y N+S S
Sbjct: 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRS 284
Score = 37.1 bits (86), Expect = 0.019
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 92 IIFHAGYSLKRAMSFALA--IRNTVSDARQAMLTTTSLIVIVTVVVQGGATIQLLHWFRI 149
+IF+AG L+ A++FALA + + + +TTT ++V TV+ QGG L+ ++
Sbjct: 360 VIFYAG--LRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKV 417
Query: 150 P 150
Sbjct: 418 K 418
Score = 36.7 bits (85), Expect = 0.026
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 78 TFDPEIFFNIILPPIIFHAGYSL 100
T D FF +LPPI+ AGY +
Sbjct: 62 TLDSSYFFLYLLPPIVLDAGYFM 84
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 100 bits (252), Expect = 4e-23
Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 34/233 (14%)
Query: 235 IDLKATFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMY 294
I DPE+F + L ++F G L + + +IL AL I++ IG L +
Sbjct: 51 ISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAH 110
Query: 295 VFLQLVPNLKSGFTFLDSLYFGALISPTDPLTILAIFNDLKVDVNLYAL----------- 343
L G + GA++SPTDP+ + IF ++V + +
Sbjct: 111 WLLP-------GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGV 163
Query: 344 ------VAIQNYGERYQSGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFT 397
VA+ G A + A+ F+ + +G ++G L L +
Sbjct: 164 GIVLFKVALAAL--------LGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRL 215
Query: 398 RVRDF--PLLESALFVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYNNLS 448
R + PLLE+ L +L++++ +L+AEA ++G++AV+ G+ NLS
Sbjct: 216 DRRGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLS 268
Score = 30.0 bits (68), Expect = 2.7
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 73 IDLKATFDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVT 132
I DPE+F + L ++F G L + R+ + L + +
Sbjct: 51 ISPDLELDPELFLVLFLAILLFAGGLELDL------------RELRRVWRSILVLALPLV 98
Query: 133 VVVQGGATIQLLHWFRIPLRFLHETGLAVIYGLIVGALI 171
++ G + L HW G+ + ++GA++
Sbjct: 99 LITALGIGL-LAHWL--------LPGIPLAAAFLLGAIL 128
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 96.9 bits (242), Expect = 5e-22
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 19/225 (8%)
Query: 240 TFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQL 299
D E+ + LP ++F AG L + KN +IL AL+G I F++G L+ + L
Sbjct: 44 DLDLEVLAELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLI-PFLLGLLLALLGGL 102
Query: 300 VPNLKSGFTFLDSLYFGALISPTDPLTILAIFNDL-KVDVNLYALV---AIQNYG----- 350
G L++L FGA +S T P+ +LAI + +++ L L+ ++ N
Sbjct: 103 ------GIPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVL 156
Query: 351 -ERYQSGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFTRVRDFPLLESAL 409
+ G + L + F+ + L +G + G L +T+FT LE L
Sbjct: 157 LAVLLALAGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFT--SGDRELEVLL 214
Query: 410 FVLMSYSTFLIAEASDLTGVVAVLFCGMCQAHYTYNNLSSDSILP 454
+ ++ L+AE L+G++ G+ ++Y + N S+ + P
Sbjct: 215 VLALALLAALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEP 259
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 82.6 bits (204), Expect = 8e-17
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 23/208 (11%)
Query: 241 FDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLV 300
D EI + LPP++F A + + +N I A + +++ V+G + L
Sbjct: 46 LDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWIL--- 102
Query: 301 PNLKSGFTFLDSLYFGALISPTDPLTILAIFNDLKVDVNLYALVAIQNYGERYQSGTGGF 360
G +L GA++SPTD + +L F ++ L L+ GE +
Sbjct: 103 -----GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLE----GESLLNDGAAL 153
Query: 361 EANAFLLAVGDFIGIFS--------LSLFIGAIM-GCLTAFL-TKFTRVR-DFPLLESAL 409
A +AV G+F + +G I G +L + R + D PL+E AL
Sbjct: 154 VVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIAL 213
Query: 410 FVLMSYSTFLIAEASDLTGVVAVLFCGM 437
+L ++ FL+AE +GV+AV+ G+
Sbjct: 214 TILAPFAGFLLAERFHFSGVIAVVAAGL 241
Score = 29.9 bits (67), Expect = 3.6
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 79 FDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVV 135
D EI + LPP++F A + R + R L L+V+ TVVV
Sbjct: 46 LDREIVLFLFLPPLLFEAAMN----TDL----RELRENFRPIALIAFLLVVVTTVVV 94
>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 30.7 bits (70), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 257 HAGYSLKRKYFFKNLGAILTFALIG 281
H ++L +KY K GA+LTF + G
Sbjct: 325 HPYHALAKKYLPKGAGAVLTFGVKG 349
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 30.8 bits (70), Expect = 1.6
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 31/205 (15%)
Query: 248 NIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGF 307
N+ L I+F G+ + F G L+ A +G I+S + G L L
Sbjct: 65 NLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL-------- 116
Query: 308 TFLDSLYFGALISPTDPLTILAIFNDLKVDVNLYALVAIQN-------------YGERYQ 354
+L+ L GA++ TD + ++ ++ + + + I++ E
Sbjct: 117 DWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFLTITLIELIA 176
Query: 355 SGTGGFEANAFLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFTRVRD--FPLLESALFVL 412
G FLL F+ F L L +G G L L + +P+L A L
Sbjct: 177 GGETNLSWG-FLL---GFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALA-GGL 231
Query: 413 MSYSTFLIAEASDLTGVVAVLFCGM 437
+ +S + A +G++AV G+
Sbjct: 232 LIFS---LTGAIGGSGILAVYLAGL 253
>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase. This model
describes a distinct clade of the Cys/Met metabolism
pyridoxal phosphate-dependent enzyme superfamily.
Members include examples of OAH/OAS sulfhydrylase, an
enzyme with activity both as O-acetylhomoserine (OAH)
sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS)
sulphydrylase (EC 2.5.1.47). An alternate name for OAH
sulfhydrylase is homocysteine synthase. This model is
designated subfamily because it may or may not have both
activities [Amino acid biosynthesis, Aspartate family,
Amino acid biosynthesis, Serine family].
Length = 418
Score = 29.6 bits (67), Expect = 3.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 257 HAGYSLKRKYFFKNLGAILTFALIG 281
H ++L +KY K GA+L+F + G
Sbjct: 319 HPHHALAKKYLPKGFGAVLSFEIKG 343
>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family. This
family includes a conserved region found in two proteins
associated with fusaric acid resistance,from
Burkholderia cepacia and Klebsiella oxytoca. These
proteins are likely to be membrane transporter proteins.
Length = 649
Score = 29.9 bits (68), Expect = 3.8
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 376 FSLSLFIGAIMGCLTAFLTKF---TRVRDFPLLESALFVLMSYSTFLIA-EASDLTGV-V 430
+ G ++ L AFL F V FPLL L + L+A + G+ +
Sbjct: 388 AARQFLRGTLLAALLAFLYLFVVLPHVDGFPLLALVLAPPLLLGGLLLARPRTAGYGLGL 447
Query: 431 AVLFCGMC--QAHYTYN 445
AV F + Q YTY+
Sbjct: 448 AVFFALLLGPQNPYTYD 464
>gnl|CDD|112704 pfam03904, DUF334, Domain of unknown function (DUF334).
Staphylococcus aureus plasmid proteins with no
characterized function.
Length = 229
Score = 28.8 bits (64), Expect = 4.8
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 257 HAGYSLKRKYFFKNLGAIL----TFALIGTTISSFVIGTLMYVFLQ--LVPNLKSGFTFL 310
H Y ++K F +GA+L FALI TI +G L LQ + +K+ F+
Sbjct: 139 HEHYQKRQKQLFTGIGAMLLVFMLFALI-MTIGRDFMGFLHVDTLQNAIAGKIKASEGFI 197
Query: 311 DSLYFGALISPTDPLTILAI 330
L++ A P ILAI
Sbjct: 198 SFLWYIAYGLP----YILAI 213
>gnl|CDD|237379 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 29.0 bits (65), Expect = 6.0
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 27/141 (19%)
Query: 94 FHAGYSLKRAMSFALAIRNTVSDARQAM---LTTTSLIVIVTVVVQGGATIQLLHWFRIP 150
+H G S + +S LA++N V+D R+ M + + + V+ G T
Sbjct: 296 YHYGTS-RELISSTLAVQNLVTDQRRIMHRKVKPHPAMFVQNAVLSGKLTA--------- 345
Query: 151 LRFLHETGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQLSLPPDTLWLKFPVK 210
E I VG + + I VPENS L LP PV
Sbjct: 346 -----ENATLWIENSHVGEGWKLASRSI----ITGVPENSW---NLDLPEGVCIDVVPVG 393
Query: 211 GASNINKTYGY--RFRGEIVD 229
+ + YG F+G + D
Sbjct: 394 DRGFVARPYGLDDVFKGALAD 414
>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 431
Score = 28.7 bits (64), Expect = 6.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 257 HAGYSLKRKYFFKNLGAILTFALIG 281
H Y L +KY K GAILTF + G
Sbjct: 327 HPSYELAKKYLPKGQGAILTFGIKG 351
>gnl|CDD|130070 TIGR00997, ispZ, intracellular septation protein A. This partially
characterized protein, whose absence can cause a cell
division defect in an intracellularly replicating
bacterium, is found only so far only in the
Proteobacteria [Cellular processes, Cell division].
Length = 178
Score = 27.7 bits (62), Expect = 9.7
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 88 ILPPIIFHAGYSL------KRAMSFALAIRNTVSDARQAMLTTTSLIVIVTVVVQGGATI 141
+LP I+F A Y + A+ A I +S + + I V +VV GG T+
Sbjct: 7 LLPLIVFFATYKMTGIFAATIALLVATIIAIGLSYVKYKKVEKMQWISFVLIVVFGGLTL 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.143 0.426
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,277,736
Number of extensions: 2619087
Number of successful extensions: 3947
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3894
Number of HSP's successfully gapped: 157
Length of query: 469
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 369
Effective length of database: 6,502,202
Effective search space: 2399312538
Effective search space used: 2399312538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)