RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16350
(469 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-06
Identities = 102/564 (18%), Positives = 166/564 (29%), Gaps = 208/564 (36%)
Query: 14 STTPLL--H------IPVVPENS----SQLH---QLSLPPDT--------------LWLK 44
ST PL H + V P S SQL LP T L K
Sbjct: 5 STRPLTLSHGSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 45 F-----------PVKGASNINKTYGYRFRGEIVDLENNEI-DLKATFDPEIFFNIILPPI 92
F V + F LE N+I L A E ++
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 93 IFHAGYSLKRAMSFALAIRNTVSDARQAMLT-----TTSLIVIVTVVVQGGATIQ--LLH 145
+ A +A R + A+ L+ I GG Q
Sbjct: 122 LIKNYI---TAR--IMAKRPFDKKSNSALFRAVGEGNAQLVAIF-----GG---QGNTDD 168
Query: 146 WFRIPLRFLHETGLAVIYGLIVGALIRYTGSTTPLLHIPVVPENSSQLHQ--------LS 197
+F LR L++T Y ++VG LI+++ T L + ++ ++ L
Sbjct: 169 YFE-ELRDLYQT-----YHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 198 LP---PDTLWLK-----FPVKGASNINKTYGYRFRGEIVDLENNEIDLKAT-FDPEIFFN 248
P PD +L P+ G ++ L + + K F P +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIG---------------VIQLAHYVVTAKLLGFTPGELRS 265
Query: 249 I----------ILPPIIFHAGYSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQ 298
++ + S + FF ++ +T F IG +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWES--FFVSVRKAITVL--------FFIG---VRCYE 312
Query: 299 LVPNLKSGFTFL-DSLYFGALISPTDPLTILAIFNDLKVDVNLYALVAIQNYGERYQSGT 357
PN + L DSL + P+ P+ L+I ++L +Q+Y +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGV-PS-PM--LSI-SNLT-------QEQVQDYVNK----- 355
Query: 358 GGFEANAFLLAVGDFIGIFSLSLFIGA----IMG---CLTAFLTKFTRVR-----D---- 401
N+ L G + I SL GA + G L + + D
Sbjct: 356 ----TNSH-LPAGKQVEI---SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 402 ------------F---------PLLESALFVL---MSYSTFLIAEASDLTGVVAVLFCGM 437
F LL A ++ + + A D+ + V
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKDIQ--IPV----- 459
Query: 438 CQAHYTYN--NL--SSDSILPPII 457
+ T++ +L S SI I+
Sbjct: 460 ---YDTFDGSDLRVLSGSISERIV 480
Score = 35.0 bits (80), Expect = 0.059
Identities = 66/353 (18%), Positives = 101/353 (28%), Gaps = 142/353 (40%)
Query: 4 IVGALIRYTGSTTPLLHIPVVPENSSQLHQ--------LSLP---PDTLWLK-----FPV 47
+VG LI+++ T L + ++ ++ L P PD +L P+
Sbjct: 183 LVGDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 48 KGAS------NINKTYGY-------RFRG------EIV---------DLEN-NEIDLKAT 78
G K G+ +G +V E+ KA
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 79 FDPEIFF-----------NIILPPIIFHAGYSLKR---AMSFALAIRNTVSDARQAMLTT 124
+ F N LPP I SL+ S L+I N + Q +
Sbjct: 301 ---TVLFFIGVRCYEAYPNTSLPPSILE--DSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 125 T-------SLIVIV------TVVVQG------GATIQLLHWF--------RIP------- 150
T + I +VV G G + L RIP
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 151 --LRFL------HETGLAVIYGLIVGAL----IRYTGSTTPLLHIPVV-PENSSQLHQL- 196
RFL H L LI L + + + IPV + S L L
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD---IQIPVYDTFDGSDLRVLS 472
Query: 197 -SLPP---DTLWLKFPV--KGASNINKTYGYRFRGEIVDLENNEIDLKATFDP 243
S+ D + ++ PV + + T+ I+D F P
Sbjct: 473 GSISERIVDCI-IRLPVKWETTTQFKATH-------ILD-----------FGP 506
Score = 32.7 bits (74), Expect = 0.35
Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 54/136 (39%)
Query: 18 LLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGY---------RFRGEIVDL 68
+L I V N P L + F + I + Y + + E +
Sbjct: 1661 ILDI--VINN----------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 69 ENNEIDLKATFD-------------PEIF------FNII-----LPPIIFHAGYSL---- 100
E NE TF P + F + +P AG+SL
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 101 -----KRAMSFALAIR 111
MS +
Sbjct: 1769 ALASLADVMSIESLVE 1784
Score = 32.3 bits (73), Expect = 0.38
Identities = 46/229 (20%), Positives = 66/229 (28%), Gaps = 89/229 (38%)
Query: 180 LLHIPVVPENSSQLHQLSLPPDTLWLKFPVKGASNINKTYGY---------RFRGEIVDL 230
+L I V N P L + F + I + Y + + E +
Sbjct: 1661 ILDI--VINN----------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 231 ENNEIDLKATFD-------------PEIF------FNII-----LPPIIFHAGYSLKRKY 266
E NE TF P + F + +P AG+S
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS----- 1763
Query: 267 FFKNLG---AILTFALIGTTISSFVIGTLMY-VFL------QLVPNLKSGFTFLDSLYFG 316
LG A+ + A I +L+ VF VP + G S Y
Sbjct: 1764 ----LGEYAALASLA------DVMSIESLVEVVFYRGMTMQVAVPRDELG----RSNYGM 1809
Query: 317 ALISPTDPLTILAIFNDLKVDVNLYALVAIQNYGERYQSGTGGF-E-AN 363
I +P + A F+ A+Q ER TG E N
Sbjct: 1810 IAI---NPGRVAASFSQ----------EALQYVVERVGKRTGWLVEIVN 1845
Score = 31.9 bits (72), Expect = 0.57
Identities = 33/160 (20%), Positives = 50/160 (31%), Gaps = 54/160 (33%)
Query: 306 GFTFLDSLYFGALISPTDPLTILAIFNDLKVDVNLYALVAIQNYGE-RYQSGTGGFEANA 364
GF+ LD I +P+ L I + + +NY +++ G
Sbjct: 1658 GFSILD-------IVINNPVN-LTIHFGGEKGKRIR-----ENYSAMIFETIVDGKLKTE 1704
Query: 365 FLLAVGDFIGIFSLSLFIGAIMGCLTAFLTKFTRVRDFPLLESALFVLMSYSTFLIAEAS 424
+ I S S + G L T+FT+ P AL LM + F E
Sbjct: 1705 KIF---KEINEHSTSYTFRSEKGLL--SATQFTQ----P----ALT-LMEKAAF---ED- 1746
Query: 425 DLTGVVAVLFCGMCQAHYTYNNLSSDSILPPIIFHAGYSL 464
L S ++P AG+SL
Sbjct: 1747 ----------------------LKSKGLIPADATFAGHSL 1764
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein,
NHE1; NMR {Homo sapiens}
Length = 33
Score = 33.5 bits (76), Expect = 0.007
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 311 DSLYFGALISPTDPLTILAIFNDLKVD 337
D+L FG++IS DP+ +LA+F ++
Sbjct: 5 DNLLFGSIISAVDPVAVLAVFEEIHKK 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.071
Identities = 33/179 (18%), Positives = 50/179 (27%), Gaps = 57/179 (31%)
Query: 139 ATIQLLHWFRIP-------LRFLHETGLAV---------IYGLIVGALIRYTGSTTPLLH 182
+ L+ WF + + LH+ L I + L
Sbjct: 390 ILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--------------YLE 434
Query: 183 IPVVPENSSQLHQLSLPPDTLWLKFPVKGAS-NINKTYGYRFRGEIVDLENNEIDLKATF 241
+ V EN LH+ + + F Y Y G L+N E + T
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--HLKNIEHPERMTL 492
Query: 242 DPEIFFNI-ILPPIIFHAGYS-------------LK--RKYFFKN-------LGAILTF 277
+F + L I H + LK + Y N + AIL F
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Score = 32.5 bits (73), Expect = 0.38
Identities = 47/293 (16%), Positives = 81/293 (27%), Gaps = 75/293 (25%)
Query: 176 STTPLLHIPVVPENSSQLHQLSLPPDTLWL----------KFPVKGASNINKTYGY---R 222
S + HI + + S +L W KF V+ IN Y +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRL------FWTLLSKQEEMVQKF-VEEVLRIN--YKFLMSP 97
Query: 223 FRGEIVDLENNEIDLKATFDPEIFFNIILPPIIFHAGYSLKRKYFFKNLGAILTFALIGT 282
+ E D N + Y++ R + L AL+
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK------YNVSRLQPYLKL----RQALLEL 147
Query: 283 TISSFVI--GTLMY-----VFLQLVPNLKSGFTFLDSLYFGA----LISPTDPLTILAIF 331
+ V+ G + + ++ + + F L + P T+L +
Sbjct: 148 RPAKNVLIDG--VLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 332 NDL--KVDVNLYALV-AIQNYGERYQSGTGGFE--------ANAFLLAVGD-----FIGI 375
L ++D N + N R S N LL + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQNAKAWNA 261
Query: 376 FSLSLFIGAIMGCLTAFLTKFTRVRDF--PLLESALFVLMSYSTFLIAEASDL 426
F+L C T+F +V DF + + + T E L
Sbjct: 262 FNL--------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Score = 28.7 bits (63), Expect = 5.7
Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 68/218 (31%)
Query: 23 VVPENSSQLHQLSLPPDTL---WLKFPVKGASNI-------------NKTYGYRFRGEIV 66
V P ++ +P L W + K +
Sbjct: 380 VFPPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 67 DLE---NNEIDL----------KATFDPEIFFNIILPP----IIFHAGYSLK---RAMSF 106
+L+ NE L TFD + ++I P H G+ LK
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 107 ALAIRNTVSDAR--QAMLTTTSLIVIVTVVVQGGATIQLLHWFRIPLRFL--HETGLAVI 162
L R D R + + S T G+ + L + ++ ++
Sbjct: 491 TL-FRMVFLDFRFLEQKIRHDS-----TAWNASGSILNTLQQLKFYKPYICDNDP----K 540
Query: 163 YGLIVGALIR---------YTGSTTPLLHIPVVPENSS 191
Y +V A++ T LL I ++ E+ +
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 30.9 bits (70), Expect = 0.85
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 260 YSLKRKYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQLVPNLKSGFTFLDSLYF 315
+ RK+ + L T L+ ++ + GT + F++ G ++ SLY+
Sbjct: 5 IEIIRKHLPRVLKVPATRILL-LVLAVIIYGTAGFHFIE-------GESWTVSLYW 52
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane
protein; HET: HSL; NMR {Homo sapiens}
Length = 27
Score = 26.3 bits (58), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 79 FDPEIFFNIILPPIIFHAGYSL 100
++FF +LPPII AGY L
Sbjct: 2 LQSDVFFLFLLPPIILDAGYFL 23
Score = 26.3 bits (58), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 241 FDPEIFFNIILPPIIFHAGYSL 262
++FF +LPPII AGY L
Sbjct: 2 LQSDVFFLFLLPPIILDAGYFL 23
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle,
NHE1, Na+/H+ transporter, metal transport; NMR
{Synthetic}
Length = 33
Score = 26.6 bits (58), Expect = 2.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 414 SYSTFLIAEASDLTGVVAVLFCGM 437
SY +L AE L+G++A++ G+
Sbjct: 3 SYMAYLSAELFHLSGIMALIASGV 26
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA
binding domain, poly(A polymerase, mitochondria,
transferase; 3.10A {Homo sapiens}
Length = 464
Score = 29.4 bits (65), Expect = 2.5
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 265 KYFFKNLGAILTFALIGTTISSFVIGTLMYVFLQ-----LVPNLKSGFTFLDS 312
+ + + LT ++ G I++F + ++ FLQ ++P L S T D+
Sbjct: 306 RCWARAHS--LTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADA 356
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.6
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 25/53 (47%)
Query: 62 RGEIVDLENNEIDLKATFDPEIFFNIILPPIIFHAGYSLKRAMSFALAIRNTV 114
+ + L+ + LK + + P ALAI+ T+
Sbjct: 19 KQALKKLQAS---LK-LYADDS------AP---------------ALAIKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.426
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,397,330
Number of extensions: 466086
Number of successful extensions: 1070
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 29
Length of query: 469
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,993,456
Effective search space: 1485565632
Effective search space used: 1485565632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.8 bits)