RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16350
         (469 letters)



>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 69

 Score = 26.5 bits (59), Expect = 1.3
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 95  HAGYSLKRAMSFALAIRNTVSDARQAM 121
             G    +A    LA++     AR+ M
Sbjct: 36  RVGLGFGKAPEVPLAVQKAGYYARRNM 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.426 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,780,958
Number of extensions: 85265
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 7
Length of query: 469
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,185,626
Effective search space: 450537880
Effective search space used: 450537880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.7 bits)