BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16352
(905 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/437 (50%), Positives = 287/437 (65%), Gaps = 41/437 (9%)
Query: 357 EKSLLHVLGILKARDSFDDWRWKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCG 416
E+S++ L L D DWR KE+ DL++LVQRR+ YLQNP DC A+KLVC +NKGCG
Sbjct: 98 ERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCG 157
Query: 417 YGCQLHHVVYCFIVAYATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNSGWPG 476
YGCQLHHVVYCF++AY T+RTLIL+S+ W Y+ GGWE VF+PVS+TCT G+S W G
Sbjct: 158 YGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSG 217
Query: 477 ---NNDTQVIYLPIIEFINPRPPYLPLAIPEDLEPRLSRLHGDPIVWWIGQFLTFLNNPT 533
+ + QV+ LPI++ ++PRPPYLPLA+PEDL RL R+HGDP VWW+ QF+ +L P
Sbjct: 218 EVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQ 277
Query: 534 PNTREIVAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEYMTGVEEYYKQLALTQTV 593
P + + + +K+ F+ P++G+H+RRTDKV TEAA HP+EEYM VEE+++ LA V
Sbjct: 278 PWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQV 337
Query: 594 DVKRVYVATDDASVLTEIREKYPQYSVLGDPSIARTASLEHRYLKSSLLGIITDLHYLSN 653
D KRVY+ATDD S+L E + KYP Y + D SI+ +A L +RY ++SL G+I D+H+LS
Sbjct: 338 DKKRVYLATDDPSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQ 397
Query: 654 CDHLVCTFSSQICRTAYEQMNAKFPDASDRYRSLDDIYYFGVPTATIWCICRTAYEQMNA 713
D LVCTFSSQ+CR AYE M PDAS + SLDDIYY
Sbjct: 398 ADFLVCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYY--------------------- 436
Query: 714 KFPDASDRYRSLDDIYYFGGQLSRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSK 773
FGGQ + IA+ H PR + E+ + GD I VAGNHW+GYSK
Sbjct: 437 -----------------FGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSK 479
Query: 774 GRNLRTDQLALYPTFKT 790
G N + + LYP++K
Sbjct: 480 GVNRKLGRTGLYPSYKV 496
Score = 356 bits (913), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 164/338 (48%), Positives = 229/338 (67%), Gaps = 6/338 (1%)
Query: 24 VSSELTQFRTELVNKTPQLAGGPNIQYELARKRVSKDVQELWYYVSSELTQFRTELVNKT 83
+ +L + + ++ N Q G +E+ R+R+ +ELW+++ SEL + + N
Sbjct: 24 LEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIENGAKELWFFLQSELKKLKNLEGN-- 81
Query: 84 PQLAGKLDRIIAETAEHKRSLLHVLDTLKARDSFDDWRWKESLDLSDLVQRRLEYLQNPP 143
+L D + + H+RS++ L L D DWR KE+ DL++LVQRR+ YLQNP
Sbjct: 82 -ELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPK 140
Query: 144 DCRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATQRTLILDSKEWSYSRGGWEEVFQPV 203
DC A+KLVC +NKGCGYGCQLHHVVYCF++AY TQRTLIL+S+ W Y+ GGWE VF+PV
Sbjct: 141 DCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPV 200
Query: 204 SKTCTSPEGVSNSSWPG---NNDTQVIYLPIIEFINPRPPYLPLAIPEDLEPRLSRLHGD 260
S+TCT G+S W G + + QV+ LPI++ ++PRPPYLPLA+PEDL RL R+HGD
Sbjct: 201 SETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGD 260
Query: 261 PIVWWIGQFLMFLNNPTPNTREIVAKYGEKIKFQKPIVGIHIRRTDKVDTEAALHPVEEY 320
P VWW+ QF+ +L P P + + + +K+ F+ P++G+H+RRTDKV TEAA HP+EEY
Sbjct: 261 PAVWWVSQFVKYLIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEY 320
Query: 321 MTGVEEYYKQLALTQTVDVKRVYVATDDASVLTEIREK 358
M VEE+++ LA VD KRVY+ATDD S+L E + K
Sbjct: 321 MVHVEEHFQLLARRMQVDKKRVYLATDDPSLLKEAKTK 358
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 807 IAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYPTFKSVPHVETARF 866
IA+ H PR + E+ + GD I VAGNHW+GYSKG N + + LYP++K +ET ++
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKY 505
Query: 867 PTYPEV 872
PTYPE
Sbjct: 506 PTYPEA 511
>pdb|1I6Z|A Chain A, Bag Domain Of Bag1 Cochaperone
Length = 135
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 51 ELARKRVSKDVQELWYYVSSELTQFRTELVNKTPQLAG--KLDRIIAETAEHKRSLLHVL 108
E++ ++++ +QEL + EL+ + + K Q KLDR + T E +L +
Sbjct: 27 EVSAEKIANHLQEL----NKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEI 82
Query: 109 DTLKARDSFDDWRWKESLDLSDLVQRRLEYLQNPPDCRTARKLVCE 154
DT+ + F D R K +LV++ +L +C T + +C+
Sbjct: 83 DTMVLPEQFKDSRLKR----KNLVKKVQVFL---AECDTVEQYICQ 121
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 807 IAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYPTFKSVP 859
+A+ ++ E+DL G+ I V G + +G+ KG +L T + ++P+ +P
Sbjct: 11 VALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63
>pdb|4B4T|O Chain O, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 393
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 18 QELWYYVSSELTQF-----------------RTELVNKTPQLAGGPNIQYELARKRVSKD 60
++LW+ +S LT+F ++ +K QL+ ++Y LA + SKD
Sbjct: 35 EKLWFQLSESLTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLSV---VKYLLASLKDSKD 91
Query: 61 VQELWYYVSSELTQFRTELVNKTPQLAGKLDR---IIAETAEHKRSLLHVLDTLKARDSF 117
E Y+ QF+ EL +K + G D I+ +E R+ L D +KARD
Sbjct: 92 FDESLKYLDDLKAQFQ-ELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLL 150
Query: 118 DDWRWKESLDLSDLVQRRL 136
DD +++LD D + R+
Sbjct: 151 DD--LEKTLDKKDSIPLRI 167
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
pdb|3FZF|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|B Chain B, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 114
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 51 ELARKRVSKDVQELWYYVSSELTQFRTELVNKTPQLAG--KLDRIIAETAEHKRSLLHVL 108
E + ++++ ++EL + ELT + + K Q KLDR + T E +L +
Sbjct: 17 EKSVEKIADQLEEL----NKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEI 72
Query: 109 DTLKARDSFDDWRWKESLDLSDLVQRRLEYLQNPPDCRTARKLVCE 154
DTL ++F D R K LV++ +L +C T + +C+
Sbjct: 73 DTLILPENFKDSRLKR----KGLVKKVQAFL---AECDTVEQNICQ 111
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 804 RIHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYPTFKSV 858
+ H A+ PRH E++L V D + V + + + N RT ++P + ++
Sbjct: 4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNXRTGARGVFPAYYAI 58
>pdb|1YVG|A Chain A, Structural Analysis Of The Catalytic Domain Of Tetanus
Neurotoxin
Length = 468
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 552 PIVGIHIRRTDKVDTEAALHPVEEYMTGVEEYYKQLALTQTVDVKRVYVATDDASVLTEI 611
PI + R +D V+ + + Y G++ YYK +T R+++ + T+
Sbjct: 1 PITINNFRYSDPVNNDTIIMMEPPYCKGLDIYYKAFKITD-----RIWIVPERYEFGTKP 55
Query: 612 REKYPQYSVLG------DPSIARTASLEHRYL----------KSSLLG------IITDLH 649
+ P S++ DP+ RT S + R+L K+++ G II +
Sbjct: 56 EDFNPPSSLIEGASEYYDPNYLRTDSDKDRFLQTMVKLFNRIKNNVAGEALLDKIINAIP 115
Query: 650 YLSNCDHLVCTFSSQICRTAYEQMNAKFPDASDRYRSLDDIYYFG 694
YL N L+ F + ++ + A+ + L ++ FG
Sbjct: 116 YLGNSYSLLDKFDTNSNSVSFNLLEQDPSGATTKSAMLTNLIIFG 160
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 804 RIHIAVLPHTPRHSSEMDLMVGDRISVAGNHWNGYSKGRNLRTDQLALYPTFKSV 858
+ H A+ PRH E++L V D + V + + + N+RT ++P + ++
Sbjct: 7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 732 GGQLSRIHIAVLPHTPRHSSEMALLVGDRISVAGNHWNGYSKGRNLRTDQLALYPTF 788
G + + H A+ PRH E+ L V D + V + + + N+RT ++P +
Sbjct: 2 GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAY 58
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 12 RVSKDVQELWYYVSSELTQF--RTELVNKTPQLAGGPNIQYELARKRVSKDVQELW 65
R +K +ELW +++ L F EL+N L G Y ++ ++++ + + W
Sbjct: 119 RTTKHQEELWSFIADSLKDFMVEQELLNTKDTLPLGFTFSYPASQNKINEGILQRW 174
>pdb|1Z7H|A Chain A, 2.3 Angstrom Crystal Structure Of Tetanus Neurotoxin Light
Chain
Length = 447
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 552 PIVGIHIRRTDKVDTEAALHPVEEYMTGVEEYYKQLALTQTVDVKRVYVATDDASVLTEI 611
PI + R +D V+ + + Y G++ YYK +T R+++ + T+
Sbjct: 6 PITINNFRYSDPVNNDTIIMMEPPYCKGLDIYYKAFKITD-----RIWIVPERYEFGTKP 60
Query: 612 REKYPQYSVLG------DPSIARTASLEHRYL----------KSSLLG------IITDLH 649
+ P S++ DP+ RT S + R+L K+++ G II +
Sbjct: 61 EDFNPPSSLIEGASEYYDPNYLRTDSDKDRFLQTMVKLFNRIKNNVAGEALLDKIINAIP 120
Query: 650 YLSNCDHLVCTFSSQICRTAYEQMNAKFPDASDRYRSLDDIYYFG 694
YL N L+ F + ++ + A+ + L ++ FG
Sbjct: 121 YLGNSYSLLDKFDTNSNSVSFNLLEQDPSGATTKSAMLTNLIIFG 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,907,181
Number of Sequences: 62578
Number of extensions: 1277111
Number of successful extensions: 2768
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2750
Number of HSP's gapped (non-prelim): 22
length of query: 905
length of database: 14,973,337
effective HSP length: 108
effective length of query: 797
effective length of database: 8,214,913
effective search space: 6547285661
effective search space used: 6547285661
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)